@wlearn/ensemble 0.1.0 → 0.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +17 -0
- package/LICENSE +177 -0
- package/NOTICE +5 -0
- package/README.md +92 -0
- package/dist/ensemble.js +1 -0
- package/dist/ensemble.mjs +2 -0
- package/package.json +37 -8
- package/src/bagging.js +6 -4
- package/src/index.js +16 -6
- package/src/oof.js +4 -8
- package/src/selection.js +5 -15
- package/src/stacking.js +6 -4
- package/src/voting.js +6 -4
- package/src/weights.js +5 -15
package/CHANGELOG.md
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# Changelog
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## 0.2.0
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- Depend on the CommonJS `@wlearn/core` release and remove the unused direct `@wlearn/types` dependency
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- Add package homepage and GitHub issue metadata
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## 0.1.0
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- Initial release
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- VotingEnsemble: soft/hard voting with configurable weights
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- StackingEnsemble: K-fold stacking with customizable meta-learner
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- BaggedEstimator: bootstrap aggregating with configurable sample size
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- Caruana greedy ensemble selection
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- OOF prediction utilities
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- Weight optimization with simplex projection
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- 60 tests
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package/LICENSE
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Apache License
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Version 2.0, January 2004
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http://www.apache.org/licenses/
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END OF TERMS AND CONDITIONS
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package/NOTICE
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package/README.md
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# @wlearn/ensemble
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Ensemble methods for wlearn: voting, stacking, bagging, and Caruana greedy selection.
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Part of [wlearn](https://wlearn.org) ([GitHub](https://github.com/wlearn-org), [all packages](https://github.com/wlearn-org/wlearn#repository-structure)).
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## Install
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```bash
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npm install @wlearn/ensemble
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```
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## Voting
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Combine multiple models by averaging predictions (soft) or majority vote (hard).
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```js
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const { VotingEnsemble } = require('@wlearn/ensemble')
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const { LinearModel } = require('@wlearn/liblinear')
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const { XGBModel } = require('@wlearn/xgboost')
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const ens = await VotingEnsemble.create({
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estimators: [
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['linear', LinearModel, { task: 'classification' }],
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['xgb', XGBModel, { task: 'classification' }]
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],
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voting: 'soft',
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task: 'classification'
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})
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ens.fit(X, y)
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const preds = ens.predict(X_test)
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const acc = ens.score(X_test, y_test)
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ens.dispose()
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```
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## Stacking
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Train base models, collect out-of-fold predictions, then train a meta-learner on those predictions.
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```js
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const { StackingEnsemble } = require('@wlearn/ensemble')
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const { LinearModel } = require('@wlearn/liblinear')
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const { XGBModel } = require('@wlearn/xgboost')
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const stack = await StackingEnsemble.create({
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estimators: [
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['xgb', XGBModel, { task: 'classification' }],
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['linear', LinearModel, { task: 'classification' }]
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],
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finalEstimator: ['meta', LinearModel, { task: 'classification' }],
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cv: 5,
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task: 'classification'
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})
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stack.fit(X, y)
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const preds = stack.predict(X_test)
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stack.dispose()
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```
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## Bagging
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Bootstrap aggregating: train multiple copies of the same model on bootstrap samples.
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```js
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const { BaggedEstimator } = require('@wlearn/ensemble')
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const { LinearModel } = require('@wlearn/liblinear')
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const bag = await BaggedEstimator.create({
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estimator: ['linear', LinearModel, { task: 'classification' }],
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nEstimators: 10,
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task: 'classification'
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})
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bag.fit(X, y)
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const preds = bag.predict(X_test)
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bag.dispose()
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```
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## Utilities
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- `caruanaSelect(oofPredictions, yTrue, opts?)` -- Caruana greedy ensemble selection
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- `getOofPredictions(estimatorSpecs, X, y, opts?)` -- compute out-of-fold predictions
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- `optimizeWeights(oofPredictions, yTrue, opts?)` -- optimize ensemble weights
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- `projectSimplex(weights)` -- project weights onto probability simplex
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## License
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Apache-2.0
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package/dist/ensemble.js
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+
var ensemble=(()=>{var x=(s,t)=>()=>(t||s((t={exports:{}}).exports,t),t.exports);var k=x((Yr,kt)=>{var O=class extends Error{constructor(t,n){super(t),this.name="WlearnError",this.code=n||"ERR_WLEARN"}},rt=class extends O{constructor(t){super(t,"ERR_BUNDLE"),this.name="BundleError"}},ot=class extends O{constructor(t){super(t,"ERR_REGISTRY"),this.name="RegistryError"}},it=class extends O{constructor(t){super(t,"ERR_VALIDATION"),this.name="ValidationError"}},at=class extends O{constructor(t="Model is not fitted. 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n={typeId:this.#s==="classification"?Be:De,params:{task:this.#s,cv:this.#o,passthrough:this.#i,seed:this.#f,estimatorNames:this.#t.map(o=>o[0]),metaName:this.#e[0],classes:this.#l?[...this.#l]:null,nMetaCols:this.#c}},e=this.#r.map((o,r)=>({id:this.#t[r][0],data:o.save(),mediaType:"application/x-wlearn-bundle"}));return e.push({id:this.#e[0],data:this.#n.save(),mediaType:"application/x-wlearn-bundle"}),nr(n,e)}static async load(t){let{manifest:n,toc:e,blobs:o}=rr(t);return s._loadFromParts(n,e,o)}dispose(){if(!this.#d){if(this.#d=!0,this.#r)for(let t of this.#r)t.dispose();this.#n&&this.#n.dispose()}}getParams(){return{task:this.#s,cv:this.#o,passthrough:this.#i,seed:this.#f,estimatorNames:this.#t.map(t=>t[0]),metaName:this.#e?this.#e[0]:null}}setParams(t){return this.#p(),t.cv!==void 0&&(this.#o=t.cv),t.passthrough!==void 0&&(this.#i=t.passthrough),t.seed!==void 0&&(this.#f=t.seed),this}get capabilities(){return{classifier:this.#s==="classification",regressor:this.#s==="regression",predictProba:this.#s==="classification",decisionFunction:!1,sampleWeight:!1,csr:!1,earlyStopping:!1}}get isFitted(){return this.#h}get classes(){return this.#l}#m(t){let n=Oe(t),e=n.rows,o=this.#r.length,r=this.#s==="classification"?this.#a:1,i=o*r,a=[],f=!1;for(let c=0;c<o;c++){let l=this.#s==="classification"?this.#r[c].predictProba(n):this.#r[c].predict(n);l!=null&&typeof l.then=="function"&&(f=!0),a.push(l)}let h=c=>{let l=new Float64Array(e*this.#c);for(let d=0;d<o;d++)if(this.#s==="classification"){let u=c[d];for(let p=0;p<e;p++)for(let m=0;m<this.#a;m++)l[p*this.#c+d*r+m]=u[p*this.#a+m]}else{let u=c[d];for(let p=0;p<e;p++)l[p*this.#c+d]=u[p]}if(this.#i)for(let d=0;d<e;d++)l.set(n.data.subarray(d*n.cols,(d+1)*n.cols),d*this.#c+i);return{data:l,rows:e,cols:this.#c}};return f?Promise.all(a).then(h):h(a)}static _register(){if(ze)return;ze=!0;let t=(n,e,o)=>s._loadFromParts(n,e,o);_e(Be,t),_e(De,t)}static async _loadFromParts(t,n,e){let o=t.params,r=new s({task:o.task,cv:o.cv,passthrough:o.passthrough,seed:o.seed});r.#l=o.classes?new Int32Array(o.classes):null,r.#a=r.#l?r.#l.length:0,r.#c=o.nMetaCols,r.#t=o.estimatorNames.map(f=>[f,null,null]),r.#e=[o.metaName,null,null],r.#r=[];for(let f of o.estimatorNames){let h=n.find(l=>l.id===f);if(!h)throw new J(`No artifact for base estimator "${f}"`);let c=e.subarray(h.offset,h.offset+h.length);r.#r.push(await $e(c))}let i=n.find(f=>f.id===o.metaName);if(!i)throw new J(`No artifact for meta estimator "${o.metaName}"`);let a=e.subarray(i.offset,i.offset+i.length);return r.#n=await $e(a),r.#h=!0,r}};function Re(s,t){let{data:n,cols:e}=s,o=t.length,r=new Float64Array(o*e);for(let i=0;i<o;i++){let a=t[i]*e;r.set(n.subarray(a,a+e),i*e)}return{data:r,rows:o,cols:e}}function hr(s,t){let n=new s.constructor(t.length);for(let e=0;e<t.length;e++)n[e]=s[t[e]];return 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n=It(t),e=n.rows;if(this.#n==="regression")return this.#m(n,e);let o=this.predictProba(n);return Te(o,r=>{let i=this.#f,a=new Float64Array(e);for(let f=0;f<e;f++){let h=0,c=-1/0;for(let l=0;l<i;l++)r[f*i+l]>c&&(c=r[f*i+l],h=l);a[f]=this.#i[h]}return a})}predictProba(t){if(this.#u(),this.#n!=="classification")throw new Ye("predictProba is only available for classification");let n=It(t),e=n.rows,o=this.#f,r=this.#s.length,i=[],a=!1;for(let h of this.#s){let c=h.predictProba(n);c!=null&&typeof c.then=="function"&&(a=!0),i.push(c)}let f=h=>{let c=new Float64Array(e*o);for(let l of h)for(let d=0;d<e*o;d++)c[d]+=l[d];for(let l=0;l<e*o;l++)c[l]/=r;return c};return a?Promise.all(i).then(f):f(i)}score(t,n){this.#u();let e=this.predict(t),o=Xe(n),r=this.#n==="classification"?mr:wr;return Te(e,i=>r(o,i))}#m(t,n){let e=this.#s.length,o=[],r=!1;for(let a of this.#s){let f=a.predict(t);f!=null&&typeof f.then=="function"&&(r=!0),o.push(f)}let i=a=>{let f=new Float64Array(n);for(let h of a)for(let 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i=qr(t),a=_r(n),f=i.rows,h=r==="classification"?kr(a,e,{shuffle:!0,seed:o}):Mr(f,e,{shuffle:!0,seed:o}),c=null,l=0;if(r==="classification"){let u=new Set;for(let p=0;p<a.length;p++)u.add(a[p]);c=new Int32Array([...u].sort((p,m)=>p-m)),l=c.length}let d=[];for(let[u,p,m]of s){let w;r==="classification"?w=new Float64Array(f*l):w=new Float64Array(f);for(let{train:b,test:g}of h){let y=ns(i,b),F=Or(a,b),E=ns(i,g),v=await p.create(m||{});try{if(v.fit(y,F),r==="classification"){let S=await v.predictProba(E);for(let A=0;A<g.length;A++){let j=g[A];for(let _=0;_<l;_++)w[j*l+_]=S[A*l+_]}}else{let S=await v.predict(E);for(let A=0;A<g.length;A++)w[g[A]]=S[A]}}finally{v.dispose()}}d.push(w)}return{oofPreds:d,classes:c}}function ns(s,t){let{data:n,cols:e}=s,o=t.length,r=new Float64Array(o*e);for(let i=0;i<o;i++){let a=t[i]*e;r.set(n.subarray(a,a+e),i*e)}return{data:r,rows:o,cols:e}}function Or(s,t){let n=new s.constructor(t.length);for(let e=0;e<t.length;e++)n[e]=s[t[e]];return 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n={typeId:this.#s==="classification"?Be:De,params:{task:this.#s,cv:this.#o,passthrough:this.#i,seed:this.#f,estimatorNames:this.#t.map(o=>o[0]),metaName:this.#e[0],classes:this.#l?[...this.#l]:null,nMetaCols:this.#c}},e=this.#r.map((o,r)=>({id:this.#t[r][0],data:o.save(),mediaType:"application/x-wlearn-bundle"}));return e.push({id:this.#e[0],data:this.#n.save(),mediaType:"application/x-wlearn-bundle"}),nr(n,e)}static async load(t){let{manifest:n,toc:e,blobs:o}=rr(t);return s._loadFromParts(n,e,o)}dispose(){if(!this.#d){if(this.#d=!0,this.#r)for(let t of this.#r)t.dispose();this.#n&&this.#n.dispose()}}getParams(){return{task:this.#s,cv:this.#o,passthrough:this.#i,seed:this.#f,estimatorNames:this.#t.map(t=>t[0]),metaName:this.#e?this.#e[0]:null}}setParams(t){return this.#p(),t.cv!==void 0&&(this.#o=t.cv),t.passthrough!==void 0&&(this.#i=t.passthrough),t.seed!==void 0&&(this.#f=t.seed),this}get capabilities(){return{classifier:this.#s==="classification",regressor:this.#s==="regression",predictProba:this.#s==="classification",decisionFunction:!1,sampleWeight:!1,csr:!1,earlyStopping:!1}}get isFitted(){return this.#h}get classes(){return this.#l}#m(t){let n=Oe(t),e=n.rows,o=this.#r.length,r=this.#s==="classification"?this.#a:1,i=o*r,a=[],f=!1;for(let c=0;c<o;c++){let l=this.#s==="classification"?this.#r[c].predictProba(n):this.#r[c].predict(n);l!=null&&typeof l.then=="function"&&(f=!0),a.push(l)}let h=c=>{let l=new Float64Array(e*this.#c);for(let d=0;d<o;d++)if(this.#s==="classification"){let u=c[d];for(let p=0;p<e;p++)for(let m=0;m<this.#a;m++)l[p*this.#c+d*r+m]=u[p*this.#a+m]}else{let u=c[d];for(let p=0;p<e;p++)l[p*this.#c+d]=u[p]}if(this.#i)for(let d=0;d<e;d++)l.set(n.data.subarray(d*n.cols,(d+1)*n.cols),d*this.#c+i);return{data:l,rows:e,cols:this.#c}};return f?Promise.all(a).then(h):h(a)}static _register(){if(ze)return;ze=!0;let t=(n,e,o)=>s._loadFromParts(n,e,o);_e(Be,t),_e(De,t)}static async _loadFromParts(t,n,e){let o=t.params,r=new s({task:o.task,cv:o.cv,passthrough:o.passthrough,seed:o.seed});r.#l=o.classes?new Int32Array(o.classes):null,r.#a=r.#l?r.#l.length:0,r.#c=o.nMetaCols,r.#t=o.estimatorNames.map(f=>[f,null,null]),r.#e=[o.metaName,null,null],r.#r=[];for(let f of o.estimatorNames){let h=n.find(l=>l.id===f);if(!h)throw new J(`No artifact for base estimator "${f}"`);let c=e.subarray(h.offset,h.offset+h.length);r.#r.push(await $e(c))}let i=n.find(f=>f.id===o.metaName);if(!i)throw new J(`No artifact for meta estimator "${o.metaName}"`);let a=e.subarray(i.offset,i.offset+i.length);return r.#n=await $e(a),r.#h=!0,r}};function Re(s,t){let{data:n,cols:e}=s,o=t.length,r=new Float64Array(o*e);for(let i=0;i<o;i++){let a=t[i]*e;r.set(n.subarray(a,a+e),i*e)}return{data:r,rows:o,cols:e}}function hr(s,t){let n=new s.constructor(t.length);for(let e=0;e<t.length;e++)n[e]=s[t[e]];return n}je.exports={StackingEnsemble:Et}});var He=x((lo,Ke)=>{var{encodeBundle:ur,decodeBundle:dr,register:Ve,load:pr,normalizeX:It,normalizeY:Xe,accuracy:mr,r2Score:wr,stratifiedKFold:gr,kFold:br,ValidationError:Ye,NotFittedError:yr,DisposedError:xr,lift:Te}=R(),Ce="wlearn.ensemble.bagged.classifier@1",We="wlearn.ensemble.bagged.regressor@1",Je=!1,Pt=class s{#t;#e;#r;#n;#o;#s;#i;#f=0;#l=0;#a;#c;#h=!1;#d=!1;constructor(t={}){this.#t=t.estimator||null,this.#e=t.kFold||5,this.#r=t.nRepeats||1,this.#n=t.task||"classification",this.#o=t.seed??42,this.#s=null,this.#i=null,this.#a=null,this.#c=null,s._register()}static async create(t={}){return new s(t)}#p(){if(this.#d)throw new xr("BaggedEstimator has been disposed.")}#u(){if(this.#p(),!this.#h)throw new yr("BaggedEstimator is not fitted. Call fit() first.")}async fit(t,n){this.#p();let e=It(t),o=Xe(n),r=e.rows;if(this.#l=r,this.#n==="classification"){let f=new Set;for(let h=0;h<o.length;h++)f.add(o[h]);this.#i=new Int32Array([...f].sort((h,c)=>h-c)),this.#f=this.#i.length}this.#n==="classification"?this.#a=new Float64Array(r*this.#f):this.#a=new Float64Array(r),this.#c=new Uint8Array(r);let[,i,a]=this.#t;this.#s=[];for(let f=0;f<this.#r;f++){let h=this.#o+f,c=this.#n==="classification"?gr(o,this.#e,{shuffle:!0,seed:h}):br(r,this.#e,{shuffle:!0,seed:h});for(let{train:l,test:d}of c){let u=Ge(e,l),p=Ar(o,l),m=Ge(e,d),w=await i.create(a||{});if(w.fit(u,p),this.#n==="classification"){let b=await w.predictProba(m),g=this.#f;for(let y=0;y<d.length;y++){let F=d[y];for(let E=0;E<g;E++)this.#a[F*g+E]+=b[y*g+E]}}else{let b=await w.predict(m);for(let g=0;g<d.length;g++)this.#a[d[g]]+=b[g]}for(let b=0;b<d.length;b++)this.#c[d[b]]+=1;this.#s.push(w)}}return this.#h=!0,this}predict(t){this.#u();let n=It(t),e=n.rows;if(this.#n==="regression")return this.#m(n,e);let o=this.predictProba(n);return Te(o,r=>{let i=this.#f,a=new Float64Array(e);for(let f=0;f<e;f++){let h=0,c=-1/0;for(let l=0;l<i;l++)r[f*i+l]>c&&(c=r[f*i+l],h=l);a[f]=this.#i[h]}return a})}predictProba(t){if(this.#u(),this.#n!=="classification")throw new Ye("predictProba is only available for classification");let n=It(t),e=n.rows,o=this.#f,r=this.#s.length,i=[],a=!1;for(let h of this.#s){let c=h.predictProba(n);c!=null&&typeof c.then=="function"&&(a=!0),i.push(c)}let f=h=>{let c=new Float64Array(e*o);for(let l of h)for(let d=0;d<e*o;d++)c[d]+=l[d];for(let l=0;l<e*o;l++)c[l]/=r;return c};return a?Promise.all(i).then(f):f(i)}score(t,n){this.#u();let e=this.predict(t),o=Xe(n),r=this.#n==="classification"?mr:wr;return Te(e,i=>r(o,i))}#m(t,n){let e=this.#s.length,o=[],r=!1;for(let a of this.#s){let f=a.predict(t);f!=null&&typeof f.then=="function"&&(r=!0),o.push(f)}let i=a=>{let f=new Float64Array(n);for(let h of a)for(let c=0;c<n;c++)f[c]+=h[c];for(let h=0;h<n;h++)f[h]/=e;return f};return r?Promise.all(o).then(i):i(o)}get oofPredictions(){this.#u();let t=new Uint8Array(this.#c);for(let e=0;e<t.length;e++)t[e]===0&&(t[e]=1);if(this.#n==="classification"){let e=this.#f,o=new Float64Array(this.#a);for(let r=0;r<this.#l;r++){let i=t[r];for(let a=0;a<e;a++)o[r*e+a]/=i}return o}let n=new Float64Array(this.#a);for(let e=0;e<this.#l;e++)n[e]/=t[e];return n}save(){this.#u();let n={typeId:this.#n==="classification"?Ce:We,params:{task:this.#n,kFold:this.#e,nRepeats:this.#r,seed:this.#o,estimatorName:this.#t[0],classes:this.#i?[...this.#i]:null,nClasses:this.#f,nSamples:this.#l}},e=this.#s.map((i,a)=>({id:`fold_${a}`,data:i.save(),mediaType:"application/x-wlearn-bundle"})),o=this.oofPredictions,r=new Uint8Array(o.buffer,o.byteOffset,o.byteLength);return e.push({id:"oof",data:r,mediaType:"application/octet-stream"}),ur(n,e)}static async load(t){let{manifest:n,toc:e,blobs:o}=dr(t);return s._loadFromParts(n,e,o)}dispose(){if(!this.#d){if(this.#d=!0,this.#s)for(let t of this.#s)t.dispose();this.#s=null,this.#a=null,this.#c=null}}getParams(){return{task:this.#n,kFold:this.#e,nRepeats:this.#r,seed:this.#o,estimatorName:this.#t?this.#t[0]:null}}setParams(t){return this.#p(),t.kFold!==void 0&&(this.#e=t.kFold),t.nRepeats!==void 0&&(this.#r=t.nRepeats),t.seed!==void 0&&(this.#o=t.seed),this}get capabilities(){return{classifier:this.#n==="classification",regressor:this.#n==="regression",predictProba:this.#n==="classification",decisionFunction:!1,sampleWeight:!1,csr:!1,earlyStopping:!1}}get isFitted(){return this.#h&&!this.#d}get classes(){return this.#i}static _register(){if(Je)return;Je=!0;let t=(n,e,o)=>s._loadFromParts(n,e,o);Ve(Ce,t),Ve(We,t)}static async _loadFromParts(t,n,e){let o=t.params,r=new s({task:o.task,kFold:o.kFold||5,nRepeats:o.nRepeats||1,seed:o.seed??42});r.#i=o.classes?new Int32Array(o.classes):null,r.#f=o.nClasses||0,r.#l=o.nSamples||0,r.#t=[o.estimatorName||"base",null,null];let i=r.#e*r.#r;r.#s=[];for(let f=0;f<i;f++){let h=`fold_${f}`,c=n.find(d=>d.id===h);if(!c)throw new Ye(`No artifact for "${h}"`);let l=e.subarray(c.offset,c.offset+c.length);r.#s.push(await pr(l))}let a=n.find(f=>f.id==="oof");if(a){let f=e.subarray(a.offset,a.offset+a.length),h=new Float64Array(f.buffer.slice(f.byteOffset,f.byteOffset+f.byteLength));r.#a=h,r.#c=new Uint8Array(r.#l).fill(1)}else r.#n==="classification"?r.#a=new Float64Array(r.#l*r.#f):r.#a=new Float64Array(r.#l),r.#c=new Uint8Array(r.#l);return r.#h=!0,r}};function Ge(s,t){let{data:n,cols:e}=s,o=t.length,r=new Float64Array(o*e);for(let i=0;i<o;i++){let a=t[i]*e;r.set(n.subarray(a,a+e),i*e)}return{data:r,rows:o,cols:e}}function Ar(s,t){let n=new s.constructor(t.length);for(let e=0;e<t.length;e++)n[e]=s[t[e]];return n}Ke.exports={BaggedEstimator:Pt}});var Nt=x((fo,Qe)=>{var{ValidationError:Ze}=R();function vt(s){let t=s.length;if(t===0)return new Float64Array(0);if(t===1)return new Float64Array([1]);let n=new Float64Array(s);n.sort(),n.reverse();let e=new Float64Array(t);e[0]=n[0];for(let a=1;a<t;a++)e[a]=e[a-1]+n[a];let o=-1;for(let a=0;a<t;a++)n[a]*(a+1)>e[a]-1&&(o=a);if(o<0){let a=new Float64Array(t);return a.fill(1/t),a}let r=(e[o]-1)/(o+1),i=new Float64Array(t);for(let a=0;a<t;a++)i[a]=Math.max(s[a]-r,0);return i}function Fr(s,t,n,{task:e="classification",lr:o=.05,nIter:r=100}={}){let i=s.length,a=t.length;if(i===0)throw new Ze("optimizeWeights: need at least 1 model");if(i===1)return new Float64Array([1]);let f=new Float64Array(n),h=1e-15;if(e==="classification"){let l=s[0].length/a;if(l!==Math.floor(l))throw new Ze("optimizeWeights: prediction length must be divisible by n");for(let d=0;d<r;d++){let u=new Float64Array(i);for(let m=0;m<a;m++){let w=t[m]|0,b=0;for(let g=0;g<i;g++)b+=f[g]*s[g][m*l+w];b=Math.max(b,h);for(let g=0;g<i;g++)u[g]-=s[g][m*l+w]/b}for(let m=0;m<i;m++)u[m]/=a;for(let m=0;m<i;m++)f[m]-=o*u[m];let p=vt(f);for(let m=0;m<i;m++)f[m]=p[m]}}else for(let c=0;c<r;c++){let l=new Float64Array(i);for(let u=0;u<a;u++){let p=0;for(let w=0;w<i;w++)p+=f[w]*s[w][u];let m=t[u]-p;for(let w=0;w<i;w++)l[w]-=2*m*s[w][u]}for(let u=0;u<i;u++)l[u]/=a;for(let u=0;u<i;u++)f[u]-=o*l[u];let d=vt(f);for(let u=0;u<i;u++)f[u]=d[u]}return f}Qe.exports={optimizeWeights:Fr,projectSimplex:vt}});var ss=x((ho,es)=>{var{getScorer:Sr,normalizeY:Er,ValidationError:ts}=R(),{optimizeWeights:Ir}=Nt();function Pr(s,t,{maxSize:n=20,scoring:e="accuracy",task:o="classification",nClasses:r=0,refineWeights:i=!0}={}){let a=Er(t),f=a.length,h=s.length;if(h===0)throw new ts("caruanaSelect: need at least 1 candidate");let c=Sr(e),l=s[0].length/f;if(l!==Math.floor(l))throw new ts("caruanaSelect: oofPredictions[0].length must be divisible by n");o==="classification"&&r===0&&(r=l);let d=new Float64Array(s[0].length),u=[],p=[];for(let y=0;y<n;y++){let F=-1,E=-1/0;for(let S=0;S<h;S++){let A=vr(d,s[S],y,y+1),j=Nr(A,a,c,o,r,f);j>E&&(E=j,F=S)}u.push(F),p.push(E);let v=s[F];for(let S=0;S<d.length;S++)d[S]=(y*d[S]+v[S])/(y+1)}let m=new Map;for(let y of u)m.set(y,(m.get(y)||0)+1);let w=new Int32Array([...m.keys()].sort((y,F)=>y-F)),b=new Float64Array(w.length);for(let y=0;y<w.length;y++)b[y]=m.get(w[y])/n;let g={indices:w,weights:b,scores:new Float64Array(p)};if(i&&w.length>1){let y=Array.from(w,F=>s[F]);g.weights=Ir(y,a,b,{task:o})}return g}function vr(s,t,n,e){let o=new Float64Array(s.length);for(let r=0;r<s.length;r++)o[r]=(n*s[r]+t[r])/e;return o}function Nr(s,t,n,e,o,r){if(e==="regression")return n(t,s);let i=new Float64Array(r);for(let a=0;a<r;a++){let f=0,h=-1/0;for(let c=0;c<o;c++)s[a*o+c]>h&&(h=s[a*o+c],f=c);i[a]=f}return n(t,i)}es.exports={caruanaSelect:Pr}});var os=x((po,rs)=>{var{stratifiedKFold:kr,kFold:Mr,normalizeX:qr,normalizeY:_r,ValidationError:uo}=R();async function $r(s,t,n,{cv:e=5,seed:o=42,task:r="classification"}={}){let i=qr(t),a=_r(n),f=i.rows,h=r==="classification"?kr(a,e,{shuffle:!0,seed:o}):Mr(f,e,{shuffle:!0,seed:o}),c=null,l=0;if(r==="classification"){let u=new Set;for(let p=0;p<a.length;p++)u.add(a[p]);c=new Int32Array([...u].sort((p,m)=>p-m)),l=c.length}let d=[];for(let[u,p,m]of s){let w;r==="classification"?w=new Float64Array(f*l):w=new Float64Array(f);for(let{train:b,test:g}of h){let y=ns(i,b),F=Or(a,b),E=ns(i,g),v=await p.create(m||{});try{if(v.fit(y,F),r==="classification"){let S=await v.predictProba(E);for(let A=0;A<g.length;A++){let j=g[A];for(let _=0;_<l;_++)w[j*l+_]=S[A*l+_]}}else{let S=await v.predict(E);for(let A=0;A<g.length;A++)w[g[A]]=S[A]}}finally{v.dispose()}}d.push(w)}return{oofPreds:d,classes:c}}function ns(s,t){let{data:n,cols:e}=s,o=t.length,r=new Float64Array(o*e);for(let i=0;i<o;i++){let a=t[i]*e;r.set(n.subarray(a,a+e),i*e)}return{data:r,rows:o,cols:e}}function Or(s,t){let n=new s.constructor(t.length);for(let e=0;e<t.length;e++)n[e]=s[t[e]];return n}rs.exports={getOofPredictions:$r}});var Vr=x((mo,is)=>{var{VotingEnsemble:Lr}=qe(),{StackingEnsemble:Br}=Ue(),{BaggedEstimator:Dr}=He(),{caruanaSelect:zr}=ss(),{getOofPredictions:Rr}=os(),{optimizeWeights:jr,projectSimplex:Ur}=Nt();is.exports={VotingEnsemble:Lr,StackingEnsemble:Br,BaggedEstimator:Dr,caruanaSelect:zr,getOofPredictions:Rr,optimizeWeights:jr,projectSimplex:Ur}});return Vr();})();
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+
var {VotingEnsemble,StackingEnsemble,BaggedEstimator,caruanaSelect,getOofPredictions,optimizeWeights,projectSimplex}=__ensemble;export{VotingEnsemble,StackingEnsemble,BaggedEstimator,caruanaSelect,getOofPredictions,optimizeWeights,projectSimplex};
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package/package.json
CHANGED
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@@ -1,26 +1,55 @@
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{
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"name": "@wlearn/ensemble",
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"version": "0.
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"version": "0.2.0",
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"description": "Ensemble methods for wlearn: voting, stacking, Caruana selection",
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"type": "
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"type": "commonjs",
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".": {
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"require": "./src/index.js",
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"default": "./src/index.js"
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}
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},
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"files": [
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"src/"
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"src/",
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"dist/",
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"LICENSE",
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"NOTICE",
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"README.md",
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"CHANGELOG.md"
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],
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"sideEffects": false,
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"dependencies": {
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"@wlearn/core": "0.
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"@wlearn/types": "0.1.0"
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"@wlearn/core": "0.2.0"
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},
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"scripts": {
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"test": "node --test test/*.js"
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"test": "node --test test/*.js",
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"build:browser": "bash scripts/build-browser.sh",
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"prepack": "node scripts/prepack.js"
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"keywords": [
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"wlearn",
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"ensemble",
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"machine-learning",
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"stacking",
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"voting"
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],
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"author": "Anton Zemlyansky",
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"
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"repository": {
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"type": "git",
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"url": "https://github.com/wlearn-org/wlearn.git",
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"directory": "packages/ensemble"
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},
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"license": "Apache-2.0",
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"devDependencies": {
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"esbuild": "^0.27.3",
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"playwright": "^1.58.2"
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},
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"bugs": {
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"url": "https://github.com/wlearn-org/wlearn/issues"
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},
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"homepage": "https://wlearn.org"
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}
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package/src/bagging.js
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encodeBundle, decodeBundle, register, load
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const {
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encodeBundle, decodeBundle, register, load: registryLoad,
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normalizeX, normalizeY, accuracy, r2Score,
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stratifiedKFold, kFold,
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5
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ValidationError, NotFittedError, DisposedError,
|
|
6
6
|
lift
|
|
7
|
-
}
|
|
7
|
+
} = require('@wlearn/core')
|
|
8
8
|
|
|
9
9
|
const TYPE_ID_CLS = 'wlearn.ensemble.bagged.classifier@1'
|
|
10
10
|
const TYPE_ID_REG = 'wlearn.ensemble.bagged.regressor@1'
|
|
@@ -17,7 +17,7 @@ let _registered = false
|
|
|
17
17
|
* seed for fold assignment. OOF predictions are accumulated (sum + count)
|
|
18
18
|
* and averaged, matching AutoGluon's BaggedEnsembleModel pattern.
|
|
19
19
|
*/
|
|
20
|
-
|
|
20
|
+
class BaggedEstimator {
|
|
21
21
|
#spec // [name, Class, params]
|
|
22
22
|
#kFold
|
|
23
23
|
#nRepeats
|
|
@@ -408,3 +408,5 @@ function _subsetY(y, indices) {
|
|
|
408
408
|
}
|
|
409
409
|
return out
|
|
410
410
|
}
|
|
411
|
+
|
|
412
|
+
module.exports = { BaggedEstimator }
|
package/src/index.js
CHANGED
|
@@ -1,6 +1,16 @@
|
|
|
1
|
-
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
1
|
+
const { VotingEnsemble } = require('./voting.js')
|
|
2
|
+
const { StackingEnsemble } = require('./stacking.js')
|
|
3
|
+
const { BaggedEstimator } = require('./bagging.js')
|
|
4
|
+
const { caruanaSelect } = require('./selection.js')
|
|
5
|
+
const { getOofPredictions } = require('./oof.js')
|
|
6
|
+
const { optimizeWeights, projectSimplex } = require('./weights.js')
|
|
7
|
+
|
|
8
|
+
module.exports = {
|
|
9
|
+
VotingEnsemble,
|
|
10
|
+
StackingEnsemble,
|
|
11
|
+
BaggedEstimator,
|
|
12
|
+
caruanaSelect,
|
|
13
|
+
getOofPredictions,
|
|
14
|
+
optimizeWeights,
|
|
15
|
+
projectSimplex,
|
|
16
|
+
}
|
package/src/oof.js
CHANGED
|
@@ -1,15 +1,9 @@
|
|
|
1
|
-
|
|
1
|
+
const { stratifiedKFold, kFold, normalizeX, normalizeY, ValidationError } = require('@wlearn/core')
|
|
2
2
|
|
|
3
3
|
/**
|
|
4
4
|
* Generate out-of-fold predictions for a list of estimator specs.
|
|
5
|
-
*
|
|
6
|
-
* @param {Array<[string, Function, Object]>} estimatorSpecs - [name, EstimatorClass, params]
|
|
7
|
-
* @param {Object|number[][]} X - feature matrix
|
|
8
|
-
* @param {TypedArray|number[]} y - labels
|
|
9
|
-
* @param {Object} opts
|
|
10
|
-
* @returns {{ oofPreds: Float64Array[], classes: Int32Array|null }}
|
|
11
5
|
*/
|
|
12
|
-
|
|
6
|
+
async function getOofPredictions(estimatorSpecs, X, y, {
|
|
13
7
|
cv = 5,
|
|
14
8
|
seed = 42,
|
|
15
9
|
task = 'classification',
|
|
@@ -94,3 +88,5 @@ function _subsetY(y, indices) {
|
|
|
94
88
|
}
|
|
95
89
|
return out
|
|
96
90
|
}
|
|
91
|
+
|
|
92
|
+
module.exports = { getOofPredictions }
|
package/src/selection.js
CHANGED
|
@@ -1,22 +1,10 @@
|
|
|
1
|
-
|
|
2
|
-
|
|
1
|
+
const { getScorer, normalizeY, ValidationError } = require('@wlearn/core')
|
|
2
|
+
const { optimizeWeights } = require('./weights.js')
|
|
3
3
|
|
|
4
4
|
/**
|
|
5
5
|
* Caruana greedy ensemble selection (Caruana et al., 2004).
|
|
6
|
-
*
|
|
7
|
-
* Selects a weighted subset from a pool of OOF predictions by greedily
|
|
8
|
-
* adding the candidate that most improves the ensemble score at each step.
|
|
9
|
-
* Candidates can be selected multiple times (with replacement).
|
|
10
|
-
*
|
|
11
|
-
* @param {Float64Array[]} oofPredictions - per-candidate OOF predictions
|
|
12
|
-
* Classification: each is n_samples * n_classes (flat row-major proba)
|
|
13
|
-
* Regression: each is n_samples
|
|
14
|
-
* @param {TypedArray|number[]} yTrue - true labels
|
|
15
|
-
* @param {Object} opts
|
|
16
|
-
* @param {boolean} opts.refineWeights - if true, optimize weights after selection
|
|
17
|
-
* @returns {{ indices: Int32Array, weights: Float64Array, scores: Float64Array }}
|
|
18
6
|
*/
|
|
19
|
-
|
|
7
|
+
function caruanaSelect(oofPredictions, yTrue, {
|
|
20
8
|
maxSize = 20,
|
|
21
9
|
scoring = 'accuracy',
|
|
22
10
|
task = 'classification',
|
|
@@ -125,3 +113,5 @@ function _score(preds, yTrue, scorerFn, task, nClasses, n) {
|
|
|
125
113
|
}
|
|
126
114
|
return scorerFn(yTrue, hardPreds)
|
|
127
115
|
}
|
|
116
|
+
|
|
117
|
+
module.exports = { caruanaSelect }
|
package/src/stacking.js
CHANGED
|
@@ -1,16 +1,16 @@
|
|
|
1
|
-
|
|
2
|
-
encodeBundle, decodeBundle, register, load
|
|
1
|
+
const {
|
|
2
|
+
encodeBundle, decodeBundle, register, load: registryLoad,
|
|
3
3
|
normalizeX, normalizeY, accuracy, r2Score,
|
|
4
4
|
stratifiedKFold, kFold,
|
|
5
5
|
ValidationError, NotFittedError, DisposedError,
|
|
6
6
|
lift
|
|
7
|
-
}
|
|
7
|
+
} = require('@wlearn/core')
|
|
8
8
|
|
|
9
9
|
const TYPE_ID_CLS = 'wlearn.ensemble.stacking.classifier@1'
|
|
10
10
|
const TYPE_ID_REG = 'wlearn.ensemble.stacking.regressor@1'
|
|
11
11
|
let _registered = false
|
|
12
12
|
|
|
13
|
-
|
|
13
|
+
class StackingEnsemble {
|
|
14
14
|
#baseSpecs // [name, Class, params][]
|
|
15
15
|
#metaSpec // [name, Class, params]
|
|
16
16
|
#baseModels // fitted base model instances (on full data)
|
|
@@ -370,3 +370,5 @@ function _subsetY(y, indices) {
|
|
|
370
370
|
}
|
|
371
371
|
return out
|
|
372
372
|
}
|
|
373
|
+
|
|
374
|
+
module.exports = { StackingEnsemble }
|
package/src/voting.js
CHANGED
|
@@ -1,15 +1,15 @@
|
|
|
1
|
-
|
|
2
|
-
encodeBundle, decodeBundle, register, load
|
|
1
|
+
const {
|
|
2
|
+
encodeBundle, decodeBundle, register, load: registryLoad,
|
|
3
3
|
normalizeX, normalizeY, accuracy, r2Score,
|
|
4
4
|
ValidationError, NotFittedError, DisposedError,
|
|
5
5
|
lift
|
|
6
|
-
}
|
|
6
|
+
} = require('@wlearn/core')
|
|
7
7
|
|
|
8
8
|
const TYPE_ID_CLS = 'wlearn.ensemble.voting.classifier@1'
|
|
9
9
|
const TYPE_ID_REG = 'wlearn.ensemble.voting.regressor@1'
|
|
10
10
|
let _registered = false
|
|
11
11
|
|
|
12
|
-
|
|
12
|
+
class VotingEnsemble {
|
|
13
13
|
#specs // [name, Class, params][]
|
|
14
14
|
#models // fitted instances
|
|
15
15
|
#weights
|
|
@@ -309,3 +309,5 @@ export class VotingEnsemble {
|
|
|
309
309
|
return ens
|
|
310
310
|
}
|
|
311
311
|
}
|
|
312
|
+
|
|
313
|
+
module.exports = { VotingEnsemble }
|
package/src/weights.js
CHANGED
|
@@ -1,13 +1,10 @@
|
|
|
1
|
-
|
|
1
|
+
const { ValidationError } = require('@wlearn/core')
|
|
2
2
|
|
|
3
3
|
/**
|
|
4
4
|
* Project vector onto the probability simplex {w: w >= 0, sum(w) = 1}.
|
|
5
5
|
* O(n log n) algorithm from Duchi et al. 2008.
|
|
6
|
-
*
|
|
7
|
-
* @param {Float64Array} v - input vector
|
|
8
|
-
* @returns {Float64Array} - projected vector
|
|
9
6
|
*/
|
|
10
|
-
|
|
7
|
+
function projectSimplex(v) {
|
|
11
8
|
const n = v.length
|
|
12
9
|
if (n === 0) return new Float64Array(0)
|
|
13
10
|
if (n === 1) return new Float64Array([1.0])
|
|
@@ -47,17 +44,8 @@ export function projectSimplex(v) {
|
|
|
47
44
|
|
|
48
45
|
/**
|
|
49
46
|
* Optimize ensemble weights via projected gradient descent on the simplex.
|
|
50
|
-
*
|
|
51
|
-
* Classification: minimizes negative log-loss.
|
|
52
|
-
* Regression: minimizes MSE.
|
|
53
|
-
*
|
|
54
|
-
* @param {Float64Array[]} oofPredictions - per-model OOF predictions
|
|
55
|
-
* @param {TypedArray} yTrue - true labels
|
|
56
|
-
* @param {Float64Array} initWeights - initial weights (e.g. from Caruana)
|
|
57
|
-
* @param {object} opts
|
|
58
|
-
* @returns {Float64Array} - optimized weights (>= 0, sum = 1)
|
|
59
47
|
*/
|
|
60
|
-
|
|
48
|
+
function optimizeWeights(oofPredictions, yTrue, initWeights, {
|
|
61
49
|
task = 'classification',
|
|
62
50
|
lr = 0.05,
|
|
63
51
|
nIter = 100,
|
|
@@ -141,3 +129,5 @@ export function optimizeWeights(oofPredictions, yTrue, initWeights, {
|
|
|
141
129
|
|
|
142
130
|
return w
|
|
143
131
|
}
|
|
132
|
+
|
|
133
|
+
module.exports = { optimizeWeights, projectSimplex }
|