@wiki0/core 0.0.3 → 0.0.5

package/dist/schema.sql

@@ -24,6 +24,23 @@ CREATE TABLE IF NOT EXISTS page_links (
 	created_at TEXT DEFAULT (datetime('now'))
 );
 
+CREATE TABLE IF NOT EXISTS page_chunks (
+	id INTEGER PRIMARY KEY AUTOINCREMENT,
+	page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
+	path TEXT NOT NULL,
+	title TEXT NOT NULL,
+	heading TEXT,
+	body TEXT NOT NULL,
+	start_line INTEGER NOT NULL,
+	end_line INTEGER NOT NULL,
+	sequence INTEGER NOT NULL,
+	page_priority INTEGER NOT NULL DEFAULT 0,
+	page_status TEXT,
+	page_tags TEXT,
+	created_at TEXT DEFAULT (datetime('now')),
+	UNIQUE(page_id, sequence)
+);
+
 CREATE TABLE IF NOT EXISTS facts (
 	id INTEGER PRIMARY KEY AUTOINCREMENT,
 	page_id INTEGER REFERENCES pages(id) ON DELETE SET NULL,
@@ -31,6 +48,11 @@ CREATE TABLE IF NOT EXISTS facts (
 	summary TEXT NOT NULL,
 	body TEXT,
 	confidence TEXT NOT NULL DEFAULT 'unknown',
+	source_path TEXT,
+	source_heading TEXT,
+	source_start_line INTEGER,
+	source_end_line INTEGER,
+	source_quote TEXT,
 	created_at TEXT DEFAULT (datetime('now'))
 );
 
@@ -40,4 +62,14 @@ CREATE TABLE IF NOT EXISTS wiki_meta (
 	updated_at TEXT DEFAULT (datetime('now'))
 );
 
+CREATE TABLE IF NOT EXISTS wiki_events (
+	id INTEGER PRIMARY KEY AUTOINCREMENT,
+	operation TEXT NOT NULL,
+	summary TEXT NOT NULL,
+	target TEXT,
+	details TEXT,
+	created_at TEXT DEFAULT (datetime('now'))
+);
+
 CREATE VIRTUAL TABLE IF NOT EXISTS fts_pages USING fts5(path, title, body);
+CREATE VIRTUAL TABLE IF NOT EXISTS fts_page_chunks USING fts5(chunk_id UNINDEXED, path, title, heading, body);

package/dist/search.d.ts

@@ -1,7 +1,9 @@
-import type { BacklinkResult, ContextResult, SearchResult } from './types.js';
+import type { BacklinkResult, ChunkSearchResult, ContextResult, SearchResult, ShowChunkResult } from './types.js';
 export declare function search_wiki(query: string, root?: string, limit?: number): SearchResult[];
 export declare function plain_text_fts_query(query: string): string;
 export declare function relaxed_plain_text_fts_query(query: string): string;
+export declare function search_wiki_chunks(query: string, root?: string, limit?: number): ChunkSearchResult[];
+export declare function show_wiki_chunk(target: string, root?: string): ShowChunkResult | null;
 export declare function get_wiki_context(query: string, root?: string, limit?: number): ContextResult;
-export declare function format_context_markdown(query: string, results: SearchResult[]): string;
+export declare function format_context_markdown(query: string, results: ChunkSearchResult[], warnings?: string[]): string;
 export declare function backlinks_for_page(title: string, root?: string): BacklinkResult[];

package/dist/search.js

@@ -1,5 +1,9 @@
+import { existsSync } from 'node:fs';
+import { join } from 'node:path';
 import { open_wiki_database } from './database.js';
+import { index_status } from './indexer.js';
 import { resolve_page_path } from './pages.js';
+import { resolve_wiki_root } from './paths.js';
 export function search_wiki(query, root = '.', limit = 10) {
     const db = open_wiki_database(root);
     const statement = db.prepare(`SELECT path, title,
@@ -84,22 +88,165 @@ function plain_text_terms(query) {
 function quote_fts_term(term) {
     return `"${term.replace(/"/gu, '""')}"`;
 }
+export function search_wiki_chunks(query, root = '.', limit = 10) {
+    const db = open_wiki_database(root);
+    const statement = db.prepare(`SELECT fts_page_chunks.chunk_id AS chunk_id,
+			fts_page_chunks.path,
+			fts_page_chunks.title,
+			page_chunks.heading,
+			page_chunks.body,
+			page_chunks.start_line AS start_line,
+			page_chunks.end_line AS end_line,
+			page_chunks.page_priority,
+			page_chunks.page_status,
+			page_chunks.page_tags,
+			snippet(fts_page_chunks, 4, '[', ']', '…', 12) AS snippet,
+			bm25(fts_page_chunks) AS rank
+		FROM fts_page_chunks
+		JOIN page_chunks ON page_chunks.id = fts_page_chunks.chunk_id
+		WHERE fts_page_chunks MATCH ?
+		ORDER BY rank
+		LIMIT ?`);
+    const fts_query = plain_text_fts_query(query);
+    if (!fts_query) {
+        db.close();
+        return [];
+    }
+    try {
+        const rows = boosted_chunk_rows(statement.all(fts_query, limit * 5).map(chunk_row_from_sql), limit);
+        if (rows.length > 0)
+            return rows;
+        const relaxed_query = relaxed_plain_text_fts_query(query);
+        if (!relaxed_query || relaxed_query === fts_query)
+            return rows;
+        return boosted_chunk_rows(statement.all(relaxed_query, limit * 5).map(chunk_row_from_sql), limit);
+    }
+    catch (error) {
+        throw new Error(`Invalid wiki chunk search query: ${query}`, {
+            cause: error,
+        });
+    }
+    finally {
+        db.close();
+    }
+}
+function chunk_row_from_sql(row) {
+    return {
+        chunk_id: Number(row.chunk_id),
+        path: String(row.path),
+        title: String(row.title),
+        heading: row.heading === null ? null : String(row.heading),
+        body: String(row.body),
+        start_line: Number(row.start_line),
+        end_line: Number(row.end_line),
+        page_priority: Number(row.page_priority ?? 0),
+        page_status: row.page_status === null ? null : String(row.page_status),
+        page_tags: parse_page_tags(row.page_tags),
+        snippet: String(row.snippet),
+        rank: Number(row.rank),
+    };
+}
+function boosted_chunk_rows(rows, limit) {
+    return rows
+        .map(normalize_chunk_row)
+        .map((row) => ({ ...row, rank: boosted_rank(row) }))
+        .sort((left, right) => left.rank - right.rank)
+        .slice(0, limit);
+}
+function normalize_chunk_row(row) {
+    return {
+        ...row,
+        page_tags: parse_page_tags(row.page_tags),
+    };
+}
+function boosted_rank(row) {
+    const priority = row.page_priority ?? 0;
+    const status = (row.page_status ?? '').toLowerCase();
+    const tags = row.page_tags ?? [];
+    let rank = row.rank - priority * 0.1;
+    if (status === 'verified' || status === 'accepted')
+        rank -= 0.5;
+    if (status === 'draft' || status === 'review')
+        rank += 0.5;
+    if (status === 'stale' ||
+        status === 'superseded' ||
+        status === 'archived') {
+        rank += 2;
+    }
+    if (tags.includes('canonical') || tags.includes('source'))
+        rank -= 0.25;
+    if (tags.includes('archive') || tags.includes('superseded'))
+        rank += 2;
+    return rank;
+}
+function parse_page_tags(value) {
+    if (Array.isArray(value))
+        return value.filter((item) => typeof item === 'string');
+    if (typeof value !== 'string')
+        return [];
+    try {
+        const parsed = JSON.parse(value);
+        return Array.isArray(parsed)
+            ? parsed.filter((item) => typeof item === 'string')
+            : [];
+    }
+    catch {
+        return [];
+    }
+}
+export function show_wiki_chunk(target, root = '.') {
+    const { path, line } = parse_chunk_target(target, root);
+    const db = open_wiki_database(root);
+    const row = db
+        .prepare(`SELECT id AS chunk_id, path, title, heading, body,
+				start_line AS start_line, end_line AS end_line,
+				body AS snippet, 0 AS rank
+			FROM page_chunks
+			WHERE path = ? AND (? IS NULL OR (start_line <= ? AND end_line >= ?))
+			ORDER BY sequence
+			LIMIT 1`)
+        .get(path, line, line, line);
+    db.close();
+    return row ?? null;
+}
+function parse_chunk_target(target, root) {
+    const match = target.match(/^(.*?)(?::(\d+))?$/u);
+    const title = match?.[1]?.trim() ?? target;
+    const line = match?.[2] ? Number(match[2]) : null;
+    const wiki_root = resolve_wiki_root(root);
+    const direct_path = title.endsWith('.md') ? title : `${title}.md`;
+    if (existsSync(join(wiki_root, 'wiki', direct_path))) {
+        return { path: direct_path, line };
+    }
+    return { path: resolve_page_path(title, root), line };
+}
 export function get_wiki_context(query, root = '.', limit = 5) {
-    const results = search_wiki(query, root, limit);
+    const status = index_status(root);
+    const warnings = status.stale
+        ? [
+            `Index is stale (${status.reasons.join(', ')}); run index_wiki before relying on these results.`,
+        ]
+        : [];
+    const results = search_wiki_chunks(query, root, limit);
     return {
         query,
         results,
-        markdown: format_context_markdown(query, results),
+        warnings,
+        markdown: format_context_markdown(query, results, warnings),
     };
 }
-export function format_context_markdown(query, results) {
+export function format_context_markdown(query, results, warnings = []) {
     const lines = [`# wiki0 context: ${query}`, ''];
+    if (warnings.length > 0) {
+        lines.push('## Warnings', '', ...warnings.map((warning) => `- ${warning}`), '');
+    }
     if (results.length === 0) {
         lines.push('No indexed wiki context found.');
         return `${lines.join('\n')}\n`;
     }
     for (const [index, result] of results.entries()) {
-        lines.push(`## ${index + 1}. ${result.title}`, `Source: \`wiki/${result.path}\``, '', result.snippet.replace(/\s+/gu, ' ').trim(), '');
+        const line_range = `${result.start_line}-${result.end_line}`;
+        lines.push(`## ${index + 1}. ${result.title}`, `Source: \`wiki/${result.path}:${line_range}\``, result.heading ? `Heading: ${result.heading}` : '', '', result.body.trim(), '');
     }
     return `${lines.join('\n').trimEnd()}\n`;
 }
@@ -107,7 +254,7 @@ export function backlinks_for_page(title, root = '.') {
     const db = open_wiki_database(root);
     const page_path = resolve_page_path(title, root);
     const rows = db
-        .prepare(`SELECT pages.path, pages.title, page_links.raw_text AS rawText,
+        .prepare(`SELECT pages.path, pages.title, page_links.raw_text AS raw_text,
 				page_links.alias, page_links.embed
 			FROM page_links
 			JOIN pages ON pages.id = page_links.from_page_id
@@ -115,6 +262,15 @@ export function backlinks_for_page(title, root = '.') {
 			ORDER BY pages.path`)
         .all(page_path);
     db.close();
-    return rows.map((row) => ({ ...row, embed: Boolean(row.embed) }));
+    return rows.map(backlink_from_row);
+}
+function backlink_from_row(row) {
+    return {
+        path: String(row.path),
+        title: String(row.title),
+        raw_text: String(row.raw_text),
+        alias: row.alias === null ? null : String(row.alias),
+        embed: Boolean(row.embed),
+    };
 }
 //# sourceMappingURL=search.js.map

package/dist/search.js.map

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package/dist/sync.d.ts

@@ -0,0 +1,2 @@
+import type { WikiDocumentSyncOptions, WikiDocumentSyncResult } from './types.js';
+export declare function sync_documents(options: WikiDocumentSyncOptions): Promise<WikiDocumentSyncResult>;

package/dist/sync.js

@@ -0,0 +1,340 @@
+import { createHash } from 'node:crypto';
+import { existsSync, readFileSync, readdirSync, statSync, } from 'node:fs';
+import { join, relative, resolve } from 'node:path';
+import { parse_document } from './documents.js';
+import { log_wiki_event } from './events.js';
+import { add_fact, derive_facts_from_markdown } from './facts.js';
+import { index_wiki } from './indexer.js';
+import { parse_markdown, serialize_frontmatter } from './markdown.js';
+import { create_page } from './pages.js';
+import { page_file_path, resolve_wiki_root, slugify_title, } from './paths.js';
+const supported_extensions = new Set([
+    '.md',
+    '.markdown',
+    '.txt',
+    '.pdf',
+    '.docx',
+]);
+export async function sync_documents(options) {
+    const root = resolve_wiki_root(options.root);
+    const sources = discover_sources(root, options.sources, {
+        include: options.include,
+        ignore: options.ignore,
+    });
+    const display_sources = sources.map((source) => source_display_path(root, source));
+    const created = [];
+    const skipped = [];
+    const proposed_pages = [];
+    const fact_inputs = [];
+    const synced_sources = [];
+    for (const source of sources) {
+        const display_source = source_display_path(root, source);
+        const page = source_page_path(display_source);
+        const file_path = page_file_path(page, root);
+        const page_exists = existsSync(file_path);
+        const fingerprint = source_fingerprint(source);
+        const existing_fingerprint = page_exists
+            ? existing_source_fingerprint(file_path)
+            : null;
+        const existing_kind = page_exists
+            ? existing_source_kind(file_path)
+            : 'unsupported';
+        if (page_exists &&
+            fingerprint !== null &&
+            existing_fingerprint === fingerprint) {
+            skipped.push(page);
+            synced_sources.push({
+                source: display_source,
+                page: `${page}.md`,
+                kind: existing_kind,
+                status: 'unchanged',
+                warnings: [],
+            });
+            continue;
+        }
+        if (page_exists && !options.overwrite) {
+            skipped.push(page);
+            synced_sources.push({
+                source: display_source,
+                page: `${page}.md`,
+                kind: existing_kind,
+                status: 'changed',
+                warnings: [
+                    'Source page exists and source fingerprint changed; rerun with overwrite to refresh generated content.',
+                ],
+            });
+            continue;
+        }
+        const parsed = await parse_document(source);
+        create_page(page, source_page_template(parsed, display_source, fingerprint), {
+            root,
+            overwrite: options.overwrite,
+        });
+        created.push(page);
+        if (options.derive_facts !== false && options.index !== false) {
+            for (const fact of derive_facts_from_markdown(parsed.text)) {
+                fact_inputs.push({ page, fact });
+            }
+        }
+        if (options.propose_pages) {
+            proposed_pages.push(...create_proposed_pages(parsed, display_source, root));
+        }
+        synced_sources.push({
+            source: display_source,
+            page: `${page}.md`,
+            kind: parsed.kind,
+            status: parsed.kind === 'unsupported'
+                ? 'warning'
+                : page_exists
+                    ? 'updated'
+                    : 'created',
+            warnings: parsed.warnings,
+        });
+    }
+    const indexed = options.index === false ? null : index_wiki(root);
+    const derived_facts = fact_inputs.map(({ page, fact }) => add_fact({
+        root,
+        page,
+        source: `${page}.md:${fact.line}`,
+        ...fact,
+    }));
+    log_wiki_event({
+        root,
+        operation: 'sync_documents',
+        summary: `Synced ${created.length} document sources`,
+        target: root,
+        details: {
+            sources: display_sources,
+            created,
+            skipped,
+            proposed_pages,
+            derived_fact_count: derived_facts.length,
+            synced_sources,
+        },
+    });
+    return {
+        root,
+        sources: display_sources,
+        created,
+        skipped,
+        proposed_pages,
+        derived_facts,
+        synced_sources,
+        indexed,
+    };
+}
+function discover_sources(root, sources, filters = {}) {
+    const discovered = [];
+    for (const source of sources) {
+        const absolute_source = resolve(root, source);
+        if (!existsSync(absolute_source)) {
+            discovered.push(absolute_source);
+            continue;
+        }
+        const stats = statSync(absolute_source);
+        if (stats.isDirectory()) {
+            discovered.push(...discover_directory(absolute_source, root, filters));
+            continue;
+        }
+        if (matches_source_filters(root, absolute_source, filters)) {
+            discovered.push(absolute_source);
+        }
+    }
+    return [...new Set(discovered)].sort();
+}
+function discover_directory(directory, root, filters) {
+    const sources = [];
+    for (const entry of readdirSync(directory, {
+        withFileTypes: true,
+    })) {
+        if (entry.name.startsWith('.'))
+            continue;
+        const entry_path = join(directory, entry.name);
+        if (entry.isDirectory()) {
+            sources.push(...discover_directory(entry_path, root, filters));
+            continue;
+        }
+        if (supported_extensions.has(extension(entry.name)) &&
+            matches_source_filters(root, entry_path, filters)) {
+            sources.push(entry_path);
+        }
+    }
+    return sources;
+}
+function matches_source_filters(root, source, filters) {
+    const display = source_display_path(root, source);
+    const included = !filters.include ||
+        filters.include.length === 0 ||
+        filters.include.some((pattern) => glob_match(pattern, display));
+    const ignored = (filters.ignore ?? []).some((pattern) => glob_match(pattern, display));
+    return included && !ignored;
+}
+function glob_match(pattern, value) {
+    let regex = '';
+    for (let index = 0; index < pattern.length; index += 1) {
+        const character = pattern[index];
+        const next = pattern[index + 1];
+        if (character === '*' && next === '*') {
+            regex += '.*';
+            index += 1;
+            continue;
+        }
+        if (character === '*') {
+            regex += '[^/]*';
+            continue;
+        }
+        regex += character?.replace(/[.*+?^${}()|[\]\\]/gu, '\\$&') ?? '';
+    }
+    return new RegExp(`^${regex}$`, 'u').test(value);
+}
+function source_page_path(source) {
+    return `sources/synced/${slugify_title(source)}`;
+}
+function source_page_template(parsed, display_source, fingerprint) {
+    const frontmatter = serialize_frontmatter({
+        title: `Source: ${parsed.title ?? display_source}`,
+        tags: ['source', parsed.kind],
+        status: parsed.kind === 'unsupported' ? 'review' : 'draft',
+        source_path: display_source,
+        source_kind: parsed.kind,
+        source_fingerprint: fingerprint,
+    });
+    return `${frontmatter}# Source: ${parsed.title ?? display_source}
+
+Source path: \`${display_source}\`
+Source kind: \`${parsed.kind}\`
+
+## Extracted text
+
+${format_extracted_text(parsed)}
+
+## Parser metadata
+
+${format_metadata(parsed)}
+
+## Parser warnings
+
+${format_list(parsed.warnings, '- None.')}
+
+## Candidate facts
+
+${format_candidate_facts(parsed.text)}
+
+## Open questions
+
+- What claims from this source should become stable wiki pages?
+- What needs citation, owner confirmation, or freshness review?
+`;
+}
+function format_extracted_text(parsed) {
+    if (parsed.text.length === 0)
+        return '- No text extracted.';
+    const fence = markdown_code_fence(parsed.text);
+    return `${fence}\n${parsed.text}\n${fence}`;
+}
+function markdown_code_fence(text) {
+    const longest_backtick_run = Math.max(0, ...Array.from(text.matchAll(/`+/gu), (match) => match[0]?.length ?? 0));
+    return '`'.repeat(Math.max(3, longest_backtick_run + 1));
+}
+function format_metadata(parsed) {
+    const entries = Object.entries(parsed.metadata);
+    if (entries.length === 0)
+        return '- None.';
+    return entries
+        .map(([key, value]) => `- ${key}: ${value ?? 'null'}`)
+        .join('\n');
+}
+function format_list(items, empty) {
+    return items.length > 0
+        ? items.map((item) => `- ${item}`).join('\n')
+        : empty;
+}
+function format_candidate_facts(text) {
+    const facts = derive_facts_from_markdown(text).map((fact) => `- Candidate from extracted line ${fact.line}: ${fact.summary}`);
+    return facts.length > 0
+        ? facts.join('\n')
+        : '- Review this source and promote durable claims into wiki pages.';
+}
+function create_proposed_pages(parsed, display_source, root) {
+    const pages = [];
+    for (const proposal of propose_pages(parsed, display_source)) {
+        if (existsSync(page_file_path(proposal.path, root)))
+            continue;
+        create_page(proposal.path, proposal.body, {
+            root,
+            overwrite: false,
+        });
+        pages.push(proposal.path);
+    }
+    return pages;
+}
+function propose_pages(parsed, display_source) {
+    const headings = parsed.text
+        .split(/\n/u)
+        .map((line) => line.match(/^#{1,3}\s+(.+)$/u)?.[1]?.trim())
+        .filter((heading) => Boolean(heading))
+        .slice(0, 5);
+    const workflow_lines = parsed.text
+        .split(/\n/u)
+        .filter((line) => /\b(workflow|process|step|how to)\b/iu.test(line))
+        .slice(0, 3);
+    return [
+        ...headings.map((heading) => proposed_page('concepts', heading, display_source)),
+        ...workflow_lines.map((line) => proposed_page('workflows', line.replace(/^[-*]\s*/u, '').slice(0, 80), display_source)),
+    ];
+}
+function proposed_page(section, title, display_source) {
+    const clean_title = title.replace(/[#:]/gu, '').trim();
+    const path = `${section}/proposed/${slugify_title(clean_title)}`;
+    const frontmatter = serialize_frontmatter({
+        title: clean_title,
+        tags: [section.slice(0, -1), 'proposed', 'needs-review'],
+        status: 'review',
+        source_path: display_source,
+    });
+    return {
+        path,
+        body: `${frontmatter}# ${clean_title}\n\nProposed from [[${source_page_path(display_source)}|${display_source}]].\n\n## Notes\n\n- Needs human review before becoming a stable wiki page.\n`,
+    };
+}
+function extension(path) {
+    return path.slice(path.lastIndexOf('.')).toLowerCase();
+}
+function source_display_path(root, source) {
+    const relative_source = relative(root, source);
+    return relative_source.startsWith('..') || relative_source === ''
+        ? source
+        : relative_source;
+}
+function source_fingerprint(source) {
+    try {
+        const stats = statSync(source);
+        if (!stats.isFile())
+            return null;
+        return createHash('sha256')
+            .update(readFileSync(source))
+            .digest('hex');
+    }
+    catch {
+        return null;
+    }
+}
+function existing_source_fingerprint(file_path) {
+    const fingerprint = parse_markdown(readFileSync(file_path, 'utf-8'))
+        .frontmatter.source_fingerprint;
+    return typeof fingerprint === 'string' && fingerprint.length > 0
+        ? fingerprint
+        : null;
+}
+function existing_source_kind(file_path) {
+    const kind = parse_markdown(readFileSync(file_path, 'utf-8'))
+        .frontmatter.source_kind;
+    return kind === 'markdown' ||
+        kind === 'text' ||
+        kind === 'pdf' ||
+        kind === 'docx' ||
+        kind === 'unsupported'
+        ? kind
+        : 'unsupported';
+}
+//# sourceMappingURL=sync.js.map

package/dist/sync.js.map

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package/dist/topics.d.ts

@@ -0,0 +1,2 @@
+import type { TopicThreadResult } from './types.js';
+export declare function list_topic_threads(root?: string, limit?: number): TopicThreadResult[];