@wentorai/research-plugins 1.2.2 → 1.3.0

package/skills/domains/finance/akshare-finance-data/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "domains"
     subcategory: "finance"
     keywords: ["akshare", "financial data", "chinese stocks", "market data", "economic indicators", "quantitative finance"]
-    source: "https://clawhub.ai/akshare/akshare-finance"
+    source: "https://github.com/akfamily/akshare"
 ---
 
 # AkShare Financial Data Guide

package/skills/domains/finance/options-analytics-agent-guide/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "domains"
     subcategory: "finance"
     keywords: ["options analytics", "derivatives", "Greeks", "Black-Scholes", "strategy analysis", "financial agent"]
-    source: "https://github.com/options-analytics/options-agent"
+    source: "wentor-research-plugins"
 ---
 
 # Options Analytics Agent Guide

package/skills/domains/finance/stata-accounting-research/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "domains"
     subcategory: "finance"
     keywords: ["STATA", "accounting", "empirical finance", "panel data", "earnings management", "audit"]
-    source: "https://github.com/stata-accounting/resources"
+    source: "wentor-research-plugins"
 ---
 
 # STATA Accounting Research Guide

package/skills/domains/geoscience/SKILL.md

@@ -0,0 +1,17 @@
+---
+name: geoscience-skills
+description: "6 geoscience & climate skills (climate-modeling, climate-science, gis-remote-sensing, pangaea-data...). Trigger: earth science data, GIS, remote sensing, climate modeling. Design: geospatial tools, satellite data processing, and environmental models."
+---
+
+# Geoscience & Climate — 6 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [climate-modeling-guide](./climate-modeling-guide/SKILL.md) | Climate simulation, modeling tools, and climate data analysis methods |
+| [climate-science-guide](./climate-science-guide/SKILL.md) | Climate data analysis, modeling workflows, and carbon neutrality research met... |
+| [gis-remote-sensing-guide](./gis-remote-sensing-guide/SKILL.md) | GIS analysis and remote sensing workflows for geospatial research applications |
+| [pangaea-data-api](./pangaea-data-api/SKILL.md) | Access earth and environmental science datasets via PANGAEA API |
+| [satellite-remote-sensing](./satellite-remote-sensing/SKILL.md) | Satellite imagery analysis and remote sensing for earth science research |
+| [seismology-data-guide](./seismology-data-guide/SKILL.md) | Earthquake data analysis, seismogram processing, and seismic research |

package/skills/domains/humanities/SKILL.md

@@ -0,0 +1,16 @@
+---
+name: humanities-skills
+description: "5 humanities skills (digital-humanities, ethical-philosophy, history-research, philosophy-research...). Trigger: textual analysis, archival research, digital humanities, philosophy. Design: digital tools and qualitative methods for humanities scholarship."
+---
+
+# Humanities — 5 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [digital-humanities-guide](./digital-humanities-guide/SKILL.md) | Computational methods for humanities research including text mining and netwo... |
+| [ethical-philosophy-guide](./ethical-philosophy-guide/SKILL.md) | Applied ethics research methods and major ethical frameworks |
+| [history-research-guide](./history-research-guide/SKILL.md) | Historical research from primary sources to scholarly analysis |
+| [philosophy-research-guide](./philosophy-research-guide/SKILL.md) | Research methods and analytical frameworks for philosophical inquiry and scho... |
+| [political-history-guide](./political-history-guide/SKILL.md) | Chinese and European political struggle history and comparative analysis |

package/skills/domains/humanities/history-research-guide/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "domains"
     subcategory: "humanities"
     keywords: ["history", "primary sources", "archives", "historiography", "digital humanities", "periodization"]
-    source: "https://github.com/historicalsources"
+    source: "wentor-research-plugins"
 ---
 
 # History Research Guide

package/skills/domains/humanities/political-history-guide/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "domains"
     subcategory: "humanities"
     keywords: ["political history", "comparative politics", "Chinese history", "European history", "state formation", "revolution"]
-    source: "https://plato.stanford.edu/entries/political-history/"
+    source: "wentor-research-plugins"
 ---
 
 # Political History Guide

package/skills/domains/law/SKILL.md

@@ -0,0 +1,19 @@
+---
+name: law-skills
+description: "8 legal research skills (caselaw-access, courtlistener, legal-agent-skills, legal-nlp...). Trigger: legal research, case law analysis, regulatory compliance. Design: legal databases, citation networks, and judicial analytics tools."
+---
+
+# Legal Research — 8 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [caselaw-access-api](./caselaw-access-api/SKILL.md) | Query 360+ years of US case law via the Harvard Caselaw Access Project |
+| [courtlistener-api](./courtlistener-api/SKILL.md) | Legal case law database with PACER data and judge profiles |
+| [legal-agent-skills-guide](./legal-agent-skills-guide/SKILL.md) | Agent skills collection for legal research and automation |
+| [legal-nlp-guide](./legal-nlp-guide/SKILL.md) | NLP techniques for legal text analysis, case law mining, and contracts |
+| [legal-research-guide](./legal-research-guide/SKILL.md) | Legal research methods, case law analysis, and compliance tools |
+| [opencontracts-guide](./opencontracts-guide/SKILL.md) | Legal document annotation, versioning, and analysis platform |
+| [patent-analysis-guide](./patent-analysis-guide/SKILL.md) | Patent search, classification, landscape analysis, and prior art mining |
+| [regulatory-compliance-guide](./regulatory-compliance-guide/SKILL.md) | Regulatory text mining, compliance research, and policy analysis tools |

package/skills/domains/math/SKILL.md

@@ -0,0 +1,17 @@
+---
+name: math-skills
+description: "6 mathematics skills (lean-theorem-proving, linear-algebra-applications, numerical-methods, oeis...). Trigger: mathematical proofs, theorem proving, numerical methods, linear algebra. Design: formal verification tools and computational mathematics guides."
+---
+
+# Mathematics — 6 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [lean-theorem-proving-guide](./lean-theorem-proving-guide/SKILL.md) | LLM agent for formal theorem proving in Lean 4 |
+| [linear-algebra-applications](./linear-algebra-applications/SKILL.md) | Apply linear algebra concepts to research computing and data analysis |
+| [numerical-methods-guide](./numerical-methods-guide/SKILL.md) | Apply numerical methods and scientific computing techniques |
+| [oeis-api](./oeis-api/SKILL.md) | On-Line Encyclopedia of Integer Sequences API |
+| [symbolic-computation-guide](./symbolic-computation-guide/SKILL.md) | Computer algebra systems: SymPy, SageMath, and Mathematica for research |
+| [topology-data-analysis](./topology-data-analysis/SKILL.md) | Topological data analysis: persistent homology, Mapper, and TDA tools |

package/skills/domains/pharma/SKILL.md

@@ -0,0 +1,17 @@
+---
+name: pharma-skills
+description: "6 pharmaceutical research skills (clinical-pharmacology, clinical-trial-design, drug-development, drug-target-interaction...). Trigger: drug discovery, pharmacology, clinical trial design, regulatory filing. Design: end-to-end pipeline from target identification to clinical trials."
+---
+
+# Pharmaceutical Research — 6 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [clinical-pharmacology-guide](./clinical-pharmacology-guide/SKILL.md) | Clinical pharmacology principles for dosing, drug interactions, and patient s... |
+| [clinical-trial-design-guide](./clinical-trial-design-guide/SKILL.md) | Clinical trial methodology, biostatistics, and study design guidance |
+| [drug-development-guide](./drug-development-guide/SKILL.md) | End-to-end drug development pipeline from target identification to regulatory... |
+| [drug-target-interaction](./drug-target-interaction/SKILL.md) | Computational drug-target interaction prediction and virtual screening |
+| [madd-drug-discovery-guide](./madd-drug-discovery-guide/SKILL.md) | Multi-agent system for automated drug discovery pipelines |
+| [pharmacovigilance-guide](./pharmacovigilance-guide/SKILL.md) | Adverse drug event detection, safety signal mining, and drug monitoring |

package/skills/domains/physics/SKILL.md

@@ -0,0 +1,16 @@
+---
+name: physics-skills
+description: "5 physics & astrophysics skills (astrophysics-data, computational-physics, nasa-ads, particle-physics...). Trigger: physics simulations, astronomical data, computational physics. Design: domain databases (NASA ADS, arXiv) and simulation tool guides."
+---
+
+# Physics & Astrophysics — 5 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [astrophysics-data-guide](./astrophysics-data-guide/SKILL.md) | Astronomical data processing with Astropy, FITS files, and sky surveys |
+| [computational-physics-guide](./computational-physics-guide/SKILL.md) | Computational physics methods, simulations, and research tools |
+| [nasa-ads-api](./nasa-ads-api/SKILL.md) | Search astrophysics and physics literature via NASA ADS bibliographic database |
+| [particle-physics-guide](./particle-physics-guide/SKILL.md) | Particle physics data analysis with ROOT, HEPData, and event processing |
+| [quantum-computing-guide](./quantum-computing-guide/SKILL.md) | Explore quantum computing research with Qiskit and Cirq frameworks |

package/skills/domains/social-science/SKILL.md

@@ -0,0 +1,17 @@
+---
+name: social-science-skills
+description: "6 social science skills (ipums-microdata, network-analysis, psychology-research, social-research-methods...). Trigger: survey research, social networks, psychology, behavioral studies. Design: quantitative and qualitative methods for social science research."
+---
+
+# Social Science — 6 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [ipums-microdata-api](./ipums-microdata-api/SKILL.md) | Access harmonized census and survey microdata via the IPUMS API |
+| [network-analysis-guide](./network-analysis-guide/SKILL.md) | Social network analysis methods, metrics, and visualization tools |
+| [psychology-research-guide](./psychology-research-guide/SKILL.md) | Psychological research methods, experimental design, and analysis |
+| [social-research-methods](./social-research-methods/SKILL.md) | Core methods for empirical social science research including surveys and expe... |
+| [sociology-research-methods](./sociology-research-methods/SKILL.md) | Sociological research methods from observation to quantitative analysis |
+| [survey-research-guide](./survey-research-guide/SKILL.md) | Design, deploy, and analyze surveys for social science and organizational res... |

package/skills/domains/social-science/sociology-research-methods/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "domains"
     subcategory: "social-science"
     keywords: ["sociology", "social research", "qualitative methods", "survey research", "ethnography", "social theory"]
-    source: "https://clawhub.ai/ivangdavila/sociology"
+    source: "wentor-research-plugins"
 ---
 
 # Sociological Research Methods

package/skills/literature/discovery/SKILL.md

@@ -0,0 +1,20 @@
+---
+name: discovery-skills
+description: "9 paper discovery skills (citation-alert, conference-proceedings, literature-mapping, paper-recommendation...). Trigger: finding new relevant papers, tracking citations, staying current. Design: automated monitoring, recommendation engines, and alert setup guides."
+---
+
+# Paper Discovery — 9 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [citation-alert-guide](./citation-alert-guide/SKILL.md) | Set up citation alerts and track new papers citing key references |
+| [conference-proceedings-guide](./conference-proceedings-guide/SKILL.md) | Find, access, and cite conference papers and proceedings effectively |
+| [literature-mapping-guide](./literature-mapping-guide/SKILL.md) | Visual literature mapping and connected papers exploration |
+| [paper-recommendation-guide](./paper-recommendation-guide/SKILL.md) | Systematic paper recommendation and discovery using multiple methods |
+| [papers-we-love-guide](./papers-we-love-guide/SKILL.md) | Community-curated directory of influential CS research papers |
+| [rss-paper-feeds](./rss-paper-feeds/SKILL.md) | Set up RSS feeds and alerts to track new publications in your research area |
+| [semantic-paper-radar](./semantic-paper-radar/SKILL.md) | Semantic literature discovery and synthesis using embeddings |
+| [semantic-scholar-recs-guide](./semantic-scholar-recs-guide/SKILL.md) | Using Semantic Scholar recommendations API for paper discovery |
+| [zotero-arxiv-daily-guide](./zotero-arxiv-daily-guide/SKILL.md) | Guide to Zotero arXiv Daily for personalized daily paper recommendations |

package/skills/literature/discovery/paper-recommendation-guide/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "literature"
     subcategory: "discovery"
     keywords: ["paper recommendation", "literature discovery", "related papers", "reading list", "citation-based", "algorithmic discovery"]
-    source: "https://github.com/pengzhenghao/paper-recommendation"
+    source: "wentor-research-plugins"
 ---
 
 # Paper Recommendation Guide

package/skills/literature/discovery/semantic-paper-radar/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "literature"
     subcategory: "discovery"
     keywords: ["semantic search", "embeddings", "literature synthesis", "paper discovery", "vector search", "knowledge mapping"]
-    source: "https://github.com/mukulpatnaik/researchgpt"
+    source: "wentor-research-plugins"
 ---
 
 # Semantic Paper Radar

package/skills/literature/fulltext/SKILL.md

@@ -0,0 +1,26 @@
+---
+name: fulltext-skills
+description: "15 full-text access skills (bioc-pmc, core, dataverse, doaj...). Trigger: accessing paper PDFs, bulk downloading, open access, text mining. Design: legal full-text retrieval from open repositories, archives, and preprint servers."
+---
+
+# Full-Text Access — 15 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [bioc-pmc-api](./bioc-pmc-api/SKILL.md) | Access PMC Open Access articles in BioC format for text mining |
+| [core-api-guide](./core-api-guide/SKILL.md) | Search and retrieve open access research papers via CORE aggregator |
+| [dataverse-api](./dataverse-api/SKILL.md) | Deposit and discover research datasets via Harvard Dataverse API |
+| [doaj-api](./doaj-api/SKILL.md) | Search open access journals and articles in the DOAJ directory |
+| [hal-archive-api](./hal-archive-api/SKILL.md) | Access French and European research via the HAL open archive API |
+| [institutional-repository-guide](./institutional-repository-guide/SKILL.md) | Access papers from institutional and subject repositories at scale |
+| [interlibrary-loan-guide](./interlibrary-loan-guide/SKILL.md) | Access papers through interlibrary loan and document delivery services |
+| [open-access-guide](./open-access-guide/SKILL.md) | Navigate open access policies, repositories, and legal full-text retrieval me... |
+| [open-access-mining-guide](./open-access-mining-guide/SKILL.md) | Mine open access full-text repositories for research data extraction |
+| [osf-api](./osf-api/SKILL.md) | Manage open science projects and preprints via the OSF REST API |
+| [pmc-ftp-bulk-download](./pmc-ftp-bulk-download/SKILL.md) | Bulk download PMC Open Access articles via FTP for large-scale mining |
+| [pmc-oai-api](./pmc-oai-api/SKILL.md) | PubMed Central OAI-PMH metadata harvesting |
+| [preprint-servers-guide](./preprint-servers-guide/SKILL.md) | Guide to preprint servers across scientific disciplines |
+| [unpaywall-api](./unpaywall-api/SKILL.md) | Find free legal full-text versions of scholarly articles via Unpaywall |
+| [zotero-ai-butler-guide](./zotero-ai-butler-guide/SKILL.md) | AI-powered paper summarization plugin for Zotero |

package/skills/literature/metadata/SKILL.md

@@ -0,0 +1,35 @@
+---
+name: metadata-skills
+description: "24 metadata & bibliometrics skills (academic-paper-summarizer, altmetrics, bibliometrix, citation-network...). Trigger: DOI resolution, citation metrics, author disambiguation, bibliometrics. Design: metadata APIs and bibliometric analysis tools for scholarly records."
+---
+
+# Metadata & Bibliometrics — 24 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [academic-paper-summarizer](./academic-paper-summarizer/SKILL.md) | Summarize academic papers with structured extraction of key elements |
+| [altmetrics-guide](./altmetrics-guide/SKILL.md) | Guide to altmetrics and research impact beyond traditional citations |
+| [bibliometrix-guide](./bibliometrix-guide/SKILL.md) | Perform science mapping and bibliometric analysis with R bibliometrix |
+| [citation-network-guide](./citation-network-guide/SKILL.md) | Analyze citation networks, impact metrics, and bibliometric patterns |
+| [crossref-api](./crossref-api/SKILL.md) | Resolve DOIs and retrieve publication metadata from CrossRef registry |
+| [crossref-event-data-api](./crossref-event-data-api/SKILL.md) | Track scholarly mentions across the web via Crossref Event Data |
+| [datacite-api](./datacite-api/SKILL.md) | Resolve dataset DOIs and query research data metadata via DataCite |
+| [doi-content-negotiation](./doi-content-negotiation/SKILL.md) | Retrieve structured metadata from any DOI via HTTP content negotiation |
+| [doi-resolution-guide](./doi-resolution-guide/SKILL.md) | DOI content negotiation and metadata retrieval techniques |
+| [h-index-guide](./h-index-guide/SKILL.md) | Understanding and calculating research impact metrics |
+| [journal-metrics-guide](./journal-metrics-guide/SKILL.md) | Understand journal impact factors, h5-index, CiteScore, and SJR |
+| [opencitations-api](./opencitations-api/SKILL.md) | Query open citation data and reference networks via OpenCitations |
+| [orcid-api](./orcid-api/SKILL.md) | Look up researcher profiles and academic identities via the ORCID registry |
+| [orcid-integration-guide](./orcid-integration-guide/SKILL.md) | Set up and leverage ORCID for researcher identification and profiles |
+| [orkg-api](./orkg-api/SKILL.md) | Query the Open Research Knowledge Graph for structured research data |
+| [plumx-metrics-api](./plumx-metrics-api/SKILL.md) | Track research impact beyond citations via PlumX altmetrics API |
+| [ror-organization-api](./ror-organization-api/SKILL.md) | Identify and link research organizations via the ROR registry API |
+| [sophosia-reference-guide](./sophosia-reference-guide/SKILL.md) | Reference manager with PDF viewer and Markdown note support |
+| [viaf-authority-api](./viaf-authority-api/SKILL.md) | Disambiguate author identities via the VIAF authority file API |
+| [wikidata-api-guide](./wikidata-api-guide/SKILL.md) | Query Wikidata SPARQL for scholarly metadata, authors, and entities |
+| [zoplicate-dedup-guide](./zoplicate-dedup-guide/SKILL.md) | Detect and manage duplicate items in Zotero libraries |
+| [zotero-actions-tags-guide](./zotero-actions-tags-guide/SKILL.md) | Zotero workflow automation with custom actions and tags |
+| [zotmoov-guide](./zotmoov-guide/SKILL.md) | Zotero plugin for automatic attachment file organization |
+| [zutilo-guide](./zutilo-guide/SKILL.md) | Zotero utility plugin for keyboard shortcuts and batch editing |

package/skills/literature/metadata/doi-content-negotiation/SKILL.md

@@ -200,3 +200,7 @@ with open("references.bib", "w") as f:
 - [DOI Content Negotiation](https://citation.crosscite.org/docs.html)
 - [Crossref Content Negotiation](https://www.crossref.org/documentation/retrieve-metadata/content-negotiation/)
 - [CSL Style Repository](https://github.com/citation-style-language/styles)
+
+## See Also
+
+- [doi-resolution-guide](../doi-resolution-guide/SKILL.md) -- Conceptual overview of DOI resolution, validation, normalization, and CrossRef API usage.

package/skills/literature/metadata/doi-resolution-guide/SKILL.md

@@ -166,3 +166,7 @@ normalize_doi("See paper at doi.org/10.1038/s41586-021-03819-2 for details")  #
 - **Handle redirects**: Always use `allow_redirects=True` (or `-L` in curl) as DOIs redirect through the resolver.
 - **Caching**: DOI metadata rarely changes. Cache resolved metadata locally to avoid redundant API calls.
 - **Rate limits**: CrossRef allows 50 requests/second in the polite pool. For bulk operations, use their data dumps instead.
+
+## See Also
+
+- [doi-content-negotiation](../doi-content-negotiation/SKILL.md) -- Detailed API reference for retrieving metadata in multiple formats via HTTP content negotiation.

package/skills/literature/metadata/orcid-api/SKILL.md

@@ -134,3 +134,7 @@ curl -H "Authorization: Bearer YOUR_TOKEN" \
 - Official documentation: https://info.orcid.org/documentation/api-tutorial/
 - API reference: https://pub.orcid.org/v3.0/
 - ORCID integration guide: https://info.orcid.org/documentation/integration-guide/
+
+## See Also
+
+- [orcid-integration-guide](../orcid-integration-guide/SKILL.md) -- Setting up your ORCID profile, publisher/funder integrations, and best practices for maintaining your record.

package/skills/literature/metadata/orcid-integration-guide/SKILL.md

@@ -176,3 +176,7 @@ def get_orcid_works(orcid_id: str) -> list:
 - Include peer review activity (via Publons/Web of Science integration)
 - Use your ORCID iD in email signatures, CVs, and personal websites
 - Format as a full URL: https://orcid.org/0000-0002-1825-0097
+
+## See Also
+
+- [orcid-api](../orcid-api/SKILL.md) -- Detailed ORCID Public API reference with endpoints, authentication, rate limits, and query examples.

package/skills/literature/search/SKILL.md

@@ -0,0 +1,43 @@
+---
+name: search-skills
+description: "32 database search skills (arxiv, arxiv-batch-reporting, arxiv-cli-tools, arxiv-paper-processor...). Trigger: finding papers, search strategies, querying academic databases. Design: one skill per database/tool with API details, query syntax, and rate limits."
+---
+
+# Database Search — 32 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [arxiv-api](./arxiv-api/SKILL.md) | Search and retrieve preprints from the arXiv open-access repository |
+| [arxiv-batch-reporting](./arxiv-batch-reporting/SKILL.md) | Batch search and report generation from arXiv preprint repository |
+| [arxiv-cli-tools](./arxiv-cli-tools/SKILL.md) | Command-line tools for searching and batch-downloading arXiv papers |
+| [arxiv-paper-processor](./arxiv-paper-processor/SKILL.md) | Process and analyze arXiv papers systematically for research workflows |
+| [baidu-scholar-guide](./baidu-scholar-guide/SKILL.md) | Using Baidu Scholar for Chinese and English academic literature search |
+| [base-academic-search](./base-academic-search/SKILL.md) | Search 400M+ open access documents via the BASE search engine API |
+| [biorxiv-api](./biorxiv-api/SKILL.md) | Preprint server API for biology and medicine papers |
+| [boolean-search-guide](./boolean-search-guide/SKILL.md) | Master Boolean operators and advanced search syntax for academic databases |
+| [chatpaper-guide](./chatpaper-guide/SKILL.md) | Use ChatPaper to summarize and search arXiv papers with LLM assistance |
+| [citation-chaining-guide](./citation-chaining-guide/SKILL.md) | Forward and backward citation chaining techniques for literature search |
+| [citeseerx-api](./citeseerx-api/SKILL.md) | Search computer science literature via the CiteSeerX digital library |
+| [database-comparison-guide](./database-comparison-guide/SKILL.md) | Compare major academic databases and when to use each for research |
+| [deep-literature-search](./deep-literature-search/SKILL.md) | Multi-source exhaustive literature search across academic databases |
+| [eric-education-api](./eric-education-api/SKILL.md) | Search 2M+ education research records via the ERIC database API |
+| [europe-pmc-api](./europe-pmc-api/SKILL.md) | Search biomedical and life sciences literature via Europe PMC |
+| [findpapers-guide](./findpapers-guide/SKILL.md) | Search multiple academic databases simultaneously with Findpapers |
+| [google-scholar-guide](./google-scholar-guide/SKILL.md) | Advanced Google Scholar search techniques for comprehensive literature discovery |
+| [ieee-xplore-api](./ieee-xplore-api/SKILL.md) | Search IEEE's 6M+ engineering and CS publications via the Xplore API |
+| [lens-scholarly-api](./lens-scholarly-api/SKILL.md) | Search 300M+ scholarly and patent records via the Lens.org API |
+| [mesh-terms-guide](./mesh-terms-guide/SKILL.md) | Navigate MeSH vocabulary for precise PubMed and MEDLINE searches |
+| [open-library-api](./open-library-api/SKILL.md) | Search and access book metadata via the Open Library API |
+| [open-semantic-search-guide](./open-semantic-search-guide/SKILL.md) | Self-hosted semantic search and text mining platform |
+| [openaire-api](./openaire-api/SKILL.md) | Search EU-funded research outputs via the OpenAIRE Graph API |
+| [openalex-api](./openalex-api/SKILL.md) | Query the OpenAlex catalog of scholarly works, authors, and institutions |
+| [paper-search-mcp-guide](./paper-search-mcp-guide/SKILL.md) | MCP server for searching papers across arXiv, PubMed, bioRxiv |
+| [plos-open-access-api](./plos-open-access-api/SKILL.md) | Search PLOS open access journals with full-text Solr-powered API |
+| [pubmed-api](./pubmed-api/SKILL.md) | Search biomedical literature and retrieve records via PubMed E-utilities |
+| [scielo-api](./scielo-api/SKILL.md) | Access Latin American and developing world research via SciELO API |
+| [semantic-scholar-api](./semantic-scholar-api/SKILL.md) | Search papers and analyze citation graphs via Semantic Scholar |
+| [share-research-api](./share-research-api/SKILL.md) | Discover open access research outputs via the SHARE notification API |
+| [systematic-search-strategy](./systematic-search-strategy/SKILL.md) | Construct rigorous systematic search strategies for literature reviews |
+| [worldcat-search-api](./worldcat-search-api/SKILL.md) | Search the world's largest library catalog via OCLC WorldCat API |

package/skills/literature/search/paper-search-mcp-guide/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "literature"
     subcategory: "search"
     keywords: ["paper search", "MCP", "arXiv", "PubMed", "bioRxiv", "multi-database"]
-    source: "https://github.com/openags/paper-search-mcp"
+    source: "wentor-research-plugins"
 ---
 
 # Paper Search MCP Guide

package/skills/research/automation/SKILL.md

@@ -0,0 +1,21 @@
+---
+name: automation-skills
+description: "10 research automation skills (ai-scientist-v2, aim-experiment, claude-academic-workflow, data-collection-automation...). Trigger: automating experiments, tracking results, reproducible pipelines. Design: ML experiment management, workflow orchestration, and lab automation tools."
+---
+
+# Research Automation — 10 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [ai-scientist-v2-guide](./ai-scientist-v2-guide/SKILL.md) | Automated scientific discovery via agentic tree search by Sakana AI |
+| [aim-experiment-guide](./aim-experiment-guide/SKILL.md) | Track and compare research experiments with Aim experiment tracker |
+| [claude-academic-workflow-guide](./claude-academic-workflow-guide/SKILL.md) | Claude Code template for LaTeX, Beamer, and R research workflows |
+| [data-collection-automation](./data-collection-automation/SKILL.md) | Automate survey deployment, data collection, and pipeline management |
+| [datagen-research-guide](./datagen-research-guide/SKILL.md) | AI-driven multi-agent research assistant for end-to-end studies |
+| [kedro-pipeline-guide](./kedro-pipeline-guide/SKILL.md) | Build reproducible data science pipelines with Kedro for research projects |
+| [mle-agent-guide](./mle-agent-guide/SKILL.md) | Intelligent companion for ML engineering with arXiv integration |
+| [paper-to-agent-guide](./paper-to-agent-guide/SKILL.md) | Transform research papers into interactive AI agents for exploration |
+| [rd-agent-guide](./rd-agent-guide/SKILL.md) | Microsoft AI-driven R&D agent for automated data and model development |
+| [research-workflow-automation](./research-workflow-automation/SKILL.md) | Automate repetitive research tasks with pipelines, schedulers, and scripting |

package/skills/research/deep-research/SKILL.md

@@ -0,0 +1,24 @@
+---
+name: deep-research-skills
+description: "13 deep research & systematic reviews skills (auto-deep-research, deep-searcher, gpt-researcher, in-depth-research...). Trigger: systematic reviews, multi-source synthesis, comprehensive literature surveys. Design: multi-step research protocols with quality assessment and evidence grading."
+---
+
+# Deep Research & Systematic Reviews — 13 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [auto-deep-research-guide](./auto-deep-research-guide/SKILL.md) | Automated deep research tool for thorough topic investigation |
+| [deep-searcher-guide](./deep-searcher-guide/SKILL.md) | Open deep research alternative for private data with vector search |
+| [gpt-researcher-guide](./gpt-researcher-guide/SKILL.md) | Autonomous agent for comprehensive deep research on any topic |
+| [in-depth-research-guide](./in-depth-research-guide/SKILL.md) | Structured methodology for conducting exhaustive multi-source investigations |
+| [khoj-research-guide](./khoj-research-guide/SKILL.md) | AI second brain for deep research and personal knowledge management |
+| [kosmos-scientist-guide](./kosmos-scientist-guide/SKILL.md) | Claude Code-driven autonomous AI Scientist for discovery |
+| [llm-scientific-discovery-guide](./llm-scientific-discovery-guide/SKILL.md) | Survey of LLM agents for biomedical scientific discovery |
+| [local-deep-research-guide](./local-deep-research-guide/SKILL.md) | Deep research agent searching 10+ sources with local or cloud LLMs |
+| [meta-synthesis-guide](./meta-synthesis-guide/SKILL.md) | Conduct qualitative meta-synthesis and evidence synthesis methods |
+| [open-researcher-guide](./open-researcher-guide/SKILL.md) | Open pipeline for generating deep research trajectories with LLMs |
+| [scoping-review-guide](./scoping-review-guide/SKILL.md) | Scoping review methodology for broad evidence mapping |
+| [systematic-review-guide](./systematic-review-guide/SKILL.md) | Systematic review methodology with PRISMA and evidence synthesis |
+| [tongyi-deep-research-guide](./tongyi-deep-research-guide/SKILL.md) | Open-source deep research agent by Alibaba for scholarly research |

package/skills/research/deep-research/auto-deep-research-guide/SKILL.md

@@ -3,7 +3,7 @@ name: auto-deep-research-guide
 description: "Automated deep research tool for thorough topic investigation"
 version: 1.0.0
 author: wentor-community
-source: https://github.com/Auto-Deep-Research/Auto-Deep-Research
+source: "wentor-research-plugins"
 metadata:
   openclaw:
     category: "research"

package/skills/research/deep-research/in-depth-research-guide/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "research"
     subcategory: "deep-research"
     keywords: ["deep research", "systematic investigation", "multi-source research", "evidence synthesis", "research methodology", "source evaluation"]
-    source: "https://clawhub.ai/ivangdavila/in-depth-research"
+    source: "wentor-research-plugins"
 ---
 
 # In-Depth Research Methodology

package/skills/research/funding/SKILL.md

@@ -0,0 +1,20 @@
+---
+name: funding-skills
+description: "9 grants & funding skills (eu-horizon, figshare, grant-budget, grant-writing...). Trigger: grant applications, funding search, budget planning, data repositories. Design: funder-specific guides with eligibility, submission requirements, and timelines."
+---
+
+# Grants & Funding — 9 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [eu-horizon-guide](./eu-horizon-guide/SKILL.md) | Navigate EU Horizon Europe funding programs and proposal writing |
+| [figshare-api](./figshare-api/SKILL.md) | Research data sharing and repository |
+| [grant-budget-guide](./grant-budget-guide/SKILL.md) | Prepare and justify research grant budgets across funding agencies |
+| [grant-writing-guide](./grant-writing-guide/SKILL.md) | Write competitive research proposals with clear objectives and budgets |
+| [nih-reporter-api-guide](./nih-reporter-api-guide/SKILL.md) | Search NIH-funded grants and research projects via RePORTER API |
+| [nsf-award-api-guide](./nsf-award-api-guide/SKILL.md) | Search NSF awards and grants with free public API, no auth required |
+| [nsf-grant-guide](./nsf-grant-guide/SKILL.md) | Navigate NSF grant applications, program selection, and strategies |
+| [open-science-guide](./open-science-guide/SKILL.md) | Pre-registration, open data, and FAIR principles for research |
+| [zenodo-api](./zenodo-api/SKILL.md) | Open research repository for all disciplines |

package/skills/research/methodology/SKILL.md

@@ -0,0 +1,24 @@
+---
+name: methodology-skills
+description: "13 research methodology skills (action-research, claude-scientific, experimental-design, grad-school...). Trigger: study design, methodology selection, scientific reasoning, mentoring. Design: rigorous methods frameworks covering qualitative, quantitative, and mixed approaches."
+---
+
+# Research Methodology — 13 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [action-research-guide](./action-research-guide/SKILL.md) | Design and conduct action research and participatory studies |
+| [claude-scientific-guide](./claude-scientific-guide/SKILL.md) | Ready-to-use agent skills for scientific research and engineering |
+| [experimental-design-guide](./experimental-design-guide/SKILL.md) | Design rigorous experiments using DOE, factorial designs, and response surfaces |
+| [grad-school-guide](./grad-school-guide/SKILL.md) | Practical advice for thriving in PhD programs and academic research |
+| [grounded-theory-guide](./grounded-theory-guide/SKILL.md) | Apply grounded theory methodology to develop theory from data |
+| [mixed-methods-guide](./mixed-methods-guide/SKILL.md) | Guide to designing and conducting mixed methods research |
+| [osf-api-guide](./osf-api-guide/SKILL.md) | Access Open Science Framework for preregistrations, preprints, and data |
+| [parsifal-slr-guide](./parsifal-slr-guide/SKILL.md) | Plan and manage systematic literature reviews with Parsifal platform |
+| [qualitative-research-guide](./qualitative-research-guide/SKILL.md) | Design and conduct qualitative research using grounded theory, case studies, ... |
+| [research-paper-kb](./research-paper-kb/SKILL.md) | Build a persistent cross-session knowledge base from academic papers |
+| [research-town-guide](./research-town-guide/SKILL.md) | Simulate human research communities with multi-agent AI collaboration |
+| [scientify-idea-generation](./scientify-idea-generation/SKILL.md) | Generate research ideas from collected papers with gap analysis |
+| [slr-automation-guide](./slr-automation-guide/SKILL.md) | Tools and pipelines for automating systematic literature reviews |

package/skills/research/paper-review/SKILL.md

@@ -0,0 +1,19 @@
+---
+name: paper-review-skills
+description: "8 peer review skills (automated-review, latte-review, paper-critique-framework, paper-reading-assistant...). Trigger: reviewing manuscripts, comparing papers, quality assessment. Design: systematic review criteria, evaluation rubrics, and automated review tools."
+---
+
+# Peer Review — 8 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [automated-review-guide](./automated-review-guide/SKILL.md) | AI-assisted peer review tools, workflows, and quality standards |
+| [latte-review-guide](./latte-review-guide/SKILL.md) | Automate systematic literature reviews with LatteReview AI agents |
+| [paper-critique-framework](./paper-critique-framework/SKILL.md) | Structured framework for writing peer review reports and paper critiques |
+| [paper-reading-assistant](./paper-reading-assistant/SKILL.md) | AI-assisted paper reading, PDF Q&A, and summarization workflows |
+| [peer-review-guide](./peer-review-guide/SKILL.md) | Conduct thorough, constructive peer reviews and evaluate research papers crit... |
+| [rebuttal-writing-guide](./rebuttal-writing-guide/SKILL.md) | Write effective rebuttals to reviewer comments for journal submissions |
+| [review-response-guide](./review-response-guide/SKILL.md) | Craft effective point-by-point reviewer response letters |
+| [scientify-write-review-paper](./scientify-write-review-paper/SKILL.md) | Write literature reviews and survey papers from collected papers |

package/skills/research/paper-review/paper-critique-framework/SKILL.md

@@ -7,7 +7,7 @@ metadata:
     category: "research"
     subcategory: "paper-review"
     keywords: ["peer review", "paper critique", "referee report", "academic review", "manuscript evaluation", "constructive feedback"]
-    source: "https://clawhub.ai/peer-reviewer"
+    source: "wentor-research-plugins"
 ---
 
 # Paper Critique and Peer Review Framework

package/skills/tools/code-exec/SKILL.md

@@ -0,0 +1,18 @@
+---
+name: code-exec-skills
+description: "7 code execution skills (google-colab, jupyter-notebook, kaggle, overleaf-cli...). Trigger: running code, interactive notebooks, Jupyter, Colab, sandboxed execution. Design: execution environment guides with setup instructions and best practices."
+---
+
+# Code Execution — 7 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [google-colab-guide](./google-colab-guide/SKILL.md) | Run and manage Google Colab notebooks for Python and ML research |
+| [jupyter-notebook-guide](./jupyter-notebook-guide/SKILL.md) | Best practices for computational research notebooks with reproducible workflows |
+| [kaggle-api-guide](./kaggle-api-guide/SKILL.md) | Download datasets, manage competitions and notebooks via Kaggle API |
+| [overleaf-cli-guide](./overleaf-cli-guide/SKILL.md) | Sync and manage Overleaf LaTeX projects from the command line |
+| [python-reproducibility-guide](./python-reproducibility-guide/SKILL.md) | Reproducible Python environments, notebooks, and literate programming |
+| [r-reproducibility-guide](./r-reproducibility-guide/SKILL.md) | Create reproducible research workflows with R and RMarkdown/Quarto |
+| [sandbox-execution-guide](./sandbox-execution-guide/SKILL.md) | Secure sandboxed code execution environments for reproducible research computing |

package/skills/tools/diagram/SKILL.md

@@ -0,0 +1,20 @@
+---
+name: diagram-skills
+description: "9 diagrams & visuals skills (code-flow-visualizer, excalidraw-diagram, json-data-visualizer, kroki-diagram...). Trigger: creating diagrams, flowcharts, architecture visuals, LaTeX drawings. Design: tool-specific guides (Mermaid, Excalidraw, TikZ) with academic conventions."
+---
+
+# Diagrams & Visuals — 9 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [code-flow-visualizer](./code-flow-visualizer/SKILL.md) | Convert Python, JavaScript, and TypeScript functions into Mermaid flowcharts |
+| [excalidraw-diagram-guide](./excalidraw-diagram-guide/SKILL.md) | Generate hand-drawn style Excalidraw diagrams from text descriptions |
+| [json-data-visualizer](./json-data-visualizer/SKILL.md) | Guide to JSON Crack for visualizing complex JSON data structures |
+| [kroki-diagram-api](./kroki-diagram-api/SKILL.md) | Generate diagrams from text via Kroki's multi-format rendering API |
+| [mermaid-architect-guide](./mermaid-architect-guide/SKILL.md) | Design complex multi-diagram architectures using advanced Mermaid syntax |
+| [mermaid-diagram-guide](./mermaid-diagram-guide/SKILL.md) | Create flowcharts, sequence diagrams, and architecture diagrams with Mermaid |
+| [plantuml-guide](./plantuml-guide/SKILL.md) | Create UML diagrams and architecture visualizations with PlantUML |
+| [scientific-illustration-guide](./scientific-illustration-guide/SKILL.md) | Create graphical abstracts, schematic diagrams, and scientific illustrations |
+| [tldraw-whiteboard-guide](./tldraw-whiteboard-guide/SKILL.md) | Guide to tldraw for infinite canvas whiteboarding and diagram creation |

package/skills/tools/document/SKILL.md

@@ -0,0 +1,21 @@
+---
+name: document-skills
+description: "10 document processing skills (anystyle, docsgpt, grobid-pdf-parsing, large-document-reader...). Trigger: extracting text from PDFs, parsing references, document Q&A. Design: parsing pipelines (GROBID, marker) and structured extraction tools."
+---
+
+# Document Processing — 10 Skills
+
+Select the skill matching the user's need, then `read` its SKILL.md.
+
+| Skill | Description |
+|-------|-------------|
+| [anystyle-api](./anystyle-api/SKILL.md) | Citation reference parser using machine learning |
+| [docsgpt-guide](./docsgpt-guide/SKILL.md) | Deploy DocsGPT for private document analysis and research knowledge bases |
+| [grobid-pdf-parsing](./grobid-pdf-parsing/SKILL.md) | Extract structured text, metadata, and references from academic PDFs |
+| [large-document-reader](./large-document-reader/SKILL.md) | Split and read long documents chapter-by-chapter for structured analysis |
+| [markdown-academic-guide](./markdown-academic-guide/SKILL.md) | Write academic papers in Markdown with Pandoc for multi-format output |
+| [paper-parse-guide](./paper-parse-guide/SKILL.md) | Deep dual-mode reading of academic papers from PDF or URL sources |
+| [pdf-extraction-guide](./pdf-extraction-guide/SKILL.md) | PDF parsing, text extraction, and document format conversion |
+| [zotero-addon-market-guide](./zotero-addon-market-guide/SKILL.md) | Plugin marketplace and discovery platform for Zotero |
+| [zotero-night-theme-guide](./zotero-night-theme-guide/SKILL.md) | Dark mode theme plugin for Zotero reference manager |
+| [zotero-style-guide](./zotero-style-guide/SKILL.md) | Feature-rich Zotero plugin for UI customization and styling |