@wentorai/research-plugins 1.0.0 → 1.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (203) hide show
  1. package/README.md +22 -22
  2. package/curated/analysis/README.md +71 -56
  3. package/curated/domains/README.md +176 -67
  4. package/curated/literature/README.md +71 -47
  5. package/curated/research/README.md +91 -58
  6. package/curated/tools/README.md +88 -87
  7. package/curated/writing/README.md +80 -45
  8. package/mcp-configs/cloud-docs/confluence-mcp.json +37 -0
  9. package/mcp-configs/cloud-docs/google-drive-mcp.json +35 -0
  10. package/mcp-configs/cloud-docs/notion-mcp.json +29 -0
  11. package/mcp-configs/communication/discord-mcp.json +29 -0
  12. package/mcp-configs/communication/slack-mcp.json +29 -0
  13. package/mcp-configs/communication/telegram-mcp.json +28 -0
  14. package/mcp-configs/database/neo4j-mcp.json +37 -0
  15. package/mcp-configs/database/postgres-mcp.json +28 -0
  16. package/mcp-configs/database/sqlite-mcp.json +29 -0
  17. package/mcp-configs/dev-platform/github-mcp.json +31 -0
  18. package/mcp-configs/dev-platform/gitlab-mcp.json +34 -0
  19. package/mcp-configs/email/email-mcp.json +40 -0
  20. package/mcp-configs/email/gmail-mcp.json +37 -0
  21. package/mcp-configs/registry.json +178 -149
  22. package/mcp-configs/repository/dataverse-mcp.json +33 -0
  23. package/mcp-configs/repository/huggingface-mcp.json +29 -0
  24. package/openclaw.plugin.json +2 -2
  25. package/package.json +2 -2
  26. package/skills/analysis/dataviz/algorithm-visualizer-guide/SKILL.md +259 -0
  27. package/skills/analysis/dataviz/bokeh-visualization-guide/SKILL.md +270 -0
  28. package/skills/analysis/dataviz/chart-image-generator/SKILL.md +229 -0
  29. package/skills/analysis/dataviz/d3-visualization-guide/SKILL.md +281 -0
  30. package/skills/analysis/dataviz/echarts-visualization-guide/SKILL.md +250 -0
  31. package/skills/analysis/dataviz/metabase-analytics-guide/SKILL.md +242 -0
  32. package/skills/analysis/dataviz/plotly-interactive-guide/SKILL.md +266 -0
  33. package/skills/analysis/dataviz/redash-analytics-guide/SKILL.md +284 -0
  34. package/skills/analysis/econometrics/econml-causal-guide/SKILL.md +163 -0
  35. package/skills/analysis/econometrics/mostly-harmless-guide/SKILL.md +139 -0
  36. package/skills/analysis/econometrics/panel-data-analyst/SKILL.md +259 -0
  37. package/skills/analysis/econometrics/python-causality-guide/SKILL.md +134 -0
  38. package/skills/analysis/econometrics/stata-accounting-guide/SKILL.md +269 -0
  39. package/skills/analysis/econometrics/stata-analyst-guide/SKILL.md +245 -0
  40. package/skills/analysis/statistics/data-anomaly-detection/SKILL.md +157 -0
  41. package/skills/analysis/statistics/ml-experiment-tracker/SKILL.md +212 -0
  42. package/skills/analysis/statistics/pywayne-statistics-guide/SKILL.md +192 -0
  43. package/skills/analysis/statistics/quantitative-methods-guide/SKILL.md +193 -0
  44. package/skills/analysis/statistics/senior-data-scientist-guide/SKILL.md +223 -0
  45. package/skills/analysis/wrangling/csv-data-analyzer/SKILL.md +170 -0
  46. package/skills/analysis/wrangling/data-cleaning-pipeline/SKILL.md +266 -0
  47. package/skills/analysis/wrangling/data-cog-guide/SKILL.md +178 -0
  48. package/skills/analysis/wrangling/stata-data-cleaning/SKILL.md +276 -0
  49. package/skills/analysis/wrangling/survey-data-processing/SKILL.md +298 -0
  50. package/skills/domains/ai-ml/ai-model-benchmarking/SKILL.md +209 -0
  51. package/skills/domains/ai-ml/annotated-dl-papers-guide/SKILL.md +159 -0
  52. package/skills/domains/ai-ml/dl-transformer-finetune/SKILL.md +239 -0
  53. package/skills/domains/ai-ml/generative-ai-guide/SKILL.md +146 -0
  54. package/skills/domains/ai-ml/huggingface-inference-guide/SKILL.md +196 -0
  55. package/skills/domains/ai-ml/keras-deep-learning/SKILL.md +210 -0
  56. package/skills/domains/ai-ml/llm-from-scratch-guide/SKILL.md +124 -0
  57. package/skills/domains/ai-ml/ml-pipeline-guide/SKILL.md +295 -0
  58. package/skills/domains/ai-ml/nlp-toolkit-guide/SKILL.md +247 -0
  59. package/skills/domains/ai-ml/pytorch-guide/SKILL.md +281 -0
  60. package/skills/domains/ai-ml/pytorch-lightning-guide/SKILL.md +244 -0
  61. package/skills/domains/ai-ml/tensorflow-guide/SKILL.md +241 -0
  62. package/skills/domains/biomedical/bioagents-guide/SKILL.md +308 -0
  63. package/skills/domains/biomedical/medgeclaw-guide/SKILL.md +345 -0
  64. package/skills/domains/biomedical/medical-imaging-guide/SKILL.md +305 -0
  65. package/skills/domains/business/architecture-design-guide/SKILL.md +279 -0
  66. package/skills/domains/business/innovation-management-guide/SKILL.md +257 -0
  67. package/skills/domains/business/operations-research-guide/SKILL.md +258 -0
  68. package/skills/domains/chemistry/molecular-dynamics-guide/SKILL.md +237 -0
  69. package/skills/domains/chemistry/pubchem-api-guide/SKILL.md +180 -0
  70. package/skills/domains/chemistry/spectroscopy-analysis-guide/SKILL.md +290 -0
  71. package/skills/domains/cs/distributed-systems-guide/SKILL.md +268 -0
  72. package/skills/domains/cs/formal-verification-guide/SKILL.md +298 -0
  73. package/skills/domains/ecology/species-distribution-guide/SKILL.md +343 -0
  74. package/skills/domains/economics/imf-data-api-guide/SKILL.md +174 -0
  75. package/skills/domains/economics/post-labor-economics/SKILL.md +254 -0
  76. package/skills/domains/economics/pricing-psychology-guide/SKILL.md +273 -0
  77. package/skills/domains/economics/world-bank-data-guide/SKILL.md +179 -0
  78. package/skills/domains/education/assessment-design-guide/SKILL.md +213 -0
  79. package/skills/domains/education/educational-research-methods/SKILL.md +179 -0
  80. package/skills/domains/education/mooc-analytics-guide/SKILL.md +206 -0
  81. package/skills/domains/finance/portfolio-optimization-guide/SKILL.md +279 -0
  82. package/skills/domains/finance/risk-modeling-guide/SKILL.md +260 -0
  83. package/skills/domains/finance/stata-accounting-research/SKILL.md +372 -0
  84. package/skills/domains/geoscience/climate-modeling-guide/SKILL.md +215 -0
  85. package/skills/domains/geoscience/satellite-remote-sensing/SKILL.md +193 -0
  86. package/skills/domains/geoscience/seismology-data-guide/SKILL.md +208 -0
  87. package/skills/domains/humanities/ethical-philosophy-guide/SKILL.md +244 -0
  88. package/skills/domains/humanities/history-research-guide/SKILL.md +260 -0
  89. package/skills/domains/humanities/political-history-guide/SKILL.md +241 -0
  90. package/skills/domains/law/legal-nlp-guide/SKILL.md +236 -0
  91. package/skills/domains/law/patent-analysis-guide/SKILL.md +257 -0
  92. package/skills/domains/law/regulatory-compliance-guide/SKILL.md +267 -0
  93. package/skills/domains/math/symbolic-computation-guide/SKILL.md +263 -0
  94. package/skills/domains/math/topology-data-analysis/SKILL.md +305 -0
  95. package/skills/domains/pharma/clinical-trial-design-guide/SKILL.md +271 -0
  96. package/skills/domains/pharma/drug-target-interaction/SKILL.md +242 -0
  97. package/skills/domains/pharma/pharmacovigilance-guide/SKILL.md +216 -0
  98. package/skills/domains/physics/astrophysics-data-guide/SKILL.md +305 -0
  99. package/skills/domains/physics/particle-physics-guide/SKILL.md +287 -0
  100. package/skills/domains/social-science/network-analysis-guide/SKILL.md +310 -0
  101. package/skills/domains/social-science/psychology-research-guide/SKILL.md +270 -0
  102. package/skills/domains/social-science/sociology-research-guide/SKILL.md +238 -0
  103. package/skills/literature/discovery/paper-recommendation-guide/SKILL.md +120 -0
  104. package/skills/literature/discovery/semantic-paper-radar/SKILL.md +144 -0
  105. package/skills/literature/discovery/zotero-arxiv-daily-guide/SKILL.md +94 -0
  106. package/skills/literature/fulltext/core-api-guide/SKILL.md +144 -0
  107. package/skills/literature/fulltext/institutional-repository-guide/SKILL.md +212 -0
  108. package/skills/literature/fulltext/open-access-mining-guide/SKILL.md +341 -0
  109. package/skills/literature/metadata/academic-paper-summarizer/SKILL.md +101 -0
  110. package/skills/literature/metadata/wikidata-api-guide/SKILL.md +156 -0
  111. package/skills/literature/search/arxiv-batch-reporting/SKILL.md +133 -0
  112. package/skills/literature/search/arxiv-paper-processor/SKILL.md +141 -0
  113. package/skills/literature/search/baidu-scholar-guide/SKILL.md +110 -0
  114. package/skills/literature/search/chatpaper-guide/SKILL.md +122 -0
  115. package/skills/literature/search/deep-literature-search/SKILL.md +149 -0
  116. package/skills/literature/search/deepgit-search-guide/SKILL.md +147 -0
  117. package/skills/literature/search/pasa-paper-search-guide/SKILL.md +138 -0
  118. package/skills/research/automation/ai-scientist-v2-guide/SKILL.md +284 -0
  119. package/skills/research/automation/aim-experiment-guide/SKILL.md +234 -0
  120. package/skills/research/automation/datagen-research-guide/SKILL.md +131 -0
  121. package/skills/research/automation/kedro-pipeline-guide/SKILL.md +216 -0
  122. package/skills/research/automation/mle-agent-guide/SKILL.md +139 -0
  123. package/skills/research/automation/paper-to-agent-guide/SKILL.md +116 -0
  124. package/skills/research/automation/rd-agent-guide/SKILL.md +246 -0
  125. package/skills/research/automation/research-paper-orchestrator/SKILL.md +254 -0
  126. package/skills/research/deep-research/academic-deep-research/SKILL.md +190 -0
  127. package/skills/research/deep-research/auto-deep-research-guide/SKILL.md +141 -0
  128. package/skills/research/deep-research/deep-research-pro/SKILL.md +213 -0
  129. package/skills/research/deep-research/deep-research-work/SKILL.md +204 -0
  130. package/skills/research/deep-research/deep-searcher-guide/SKILL.md +253 -0
  131. package/skills/research/deep-research/gpt-researcher-guide/SKILL.md +191 -0
  132. package/skills/research/deep-research/khoj-research-guide/SKILL.md +200 -0
  133. package/skills/research/deep-research/local-deep-research-guide/SKILL.md +253 -0
  134. package/skills/research/deep-research/tongyi-deep-research-guide/SKILL.md +217 -0
  135. package/skills/research/funding/eu-horizon-guide/SKILL.md +244 -0
  136. package/skills/research/funding/grant-budget-guide/SKILL.md +284 -0
  137. package/skills/research/funding/nih-reporter-api-guide/SKILL.md +166 -0
  138. package/skills/research/funding/nsf-award-api-guide/SKILL.md +133 -0
  139. package/skills/research/methodology/academic-mentor-guide/SKILL.md +169 -0
  140. package/skills/research/methodology/claude-scientific-guide/SKILL.md +122 -0
  141. package/skills/research/methodology/deep-innovator-guide/SKILL.md +242 -0
  142. package/skills/research/methodology/osf-api-guide/SKILL.md +165 -0
  143. package/skills/research/methodology/research-paper-kb/SKILL.md +263 -0
  144. package/skills/research/methodology/research-town-guide/SKILL.md +263 -0
  145. package/skills/research/paper-review/automated-review-guide/SKILL.md +281 -0
  146. package/skills/research/paper-review/paper-compare-guide/SKILL.md +238 -0
  147. package/skills/research/paper-review/paper-digest-guide/SKILL.md +240 -0
  148. package/skills/research/paper-review/paper-research-assistant/SKILL.md +231 -0
  149. package/skills/research/paper-review/research-quality-filter/SKILL.md +261 -0
  150. package/skills/research/paper-review/review-response-guide/SKILL.md +275 -0
  151. package/skills/tools/code-exec/google-colab-guide/SKILL.md +276 -0
  152. package/skills/tools/code-exec/kaggle-api-guide/SKILL.md +216 -0
  153. package/skills/tools/code-exec/overleaf-cli-guide/SKILL.md +279 -0
  154. package/skills/tools/diagram/code-flow-visualizer/SKILL.md +197 -0
  155. package/skills/tools/diagram/excalidraw-diagram-guide/SKILL.md +170 -0
  156. package/skills/tools/diagram/json-data-visualizer/SKILL.md +270 -0
  157. package/skills/tools/diagram/mermaid-architect-guide/SKILL.md +219 -0
  158. package/skills/tools/diagram/tldraw-whiteboard-guide/SKILL.md +397 -0
  159. package/skills/tools/document/docsgpt-guide/SKILL.md +130 -0
  160. package/skills/tools/document/large-document-reader/SKILL.md +202 -0
  161. package/skills/tools/document/paper-parse-guide/SKILL.md +243 -0
  162. package/skills/tools/knowledge-graph/citation-network-builder/SKILL.md +244 -0
  163. package/skills/tools/knowledge-graph/concept-map-generator/SKILL.md +284 -0
  164. package/skills/tools/knowledge-graph/graphiti-guide/SKILL.md +219 -0
  165. package/skills/tools/ocr-translate/pdf-math-translate-guide/SKILL.md +141 -0
  166. package/skills/tools/ocr-translate/zotero-pdf-translate-guide/SKILL.md +95 -0
  167. package/skills/tools/ocr-translate/zotero-pdf2zh-guide/SKILL.md +143 -0
  168. package/skills/tools/scraping/dataset-finder-guide/SKILL.md +253 -0
  169. package/skills/tools/scraping/easy-spider-guide/SKILL.md +250 -0
  170. package/skills/tools/scraping/google-scholar-scraper/SKILL.md +255 -0
  171. package/skills/tools/scraping/repository-harvesting-guide/SKILL.md +310 -0
  172. package/skills/writing/citation/academic-citation-manager/SKILL.md +314 -0
  173. package/skills/writing/citation/jabref-reference-guide/SKILL.md +127 -0
  174. package/skills/writing/citation/jasminum-zotero-guide/SKILL.md +103 -0
  175. package/skills/writing/citation/obsidian-citation-guide/SKILL.md +164 -0
  176. package/skills/writing/citation/obsidian-zotero-guide/SKILL.md +137 -0
  177. package/skills/writing/citation/papersgpt-zotero-guide/SKILL.md +132 -0
  178. package/skills/writing/citation/papis-cli-guide/SKILL.md +213 -0
  179. package/skills/writing/citation/zotero-better-bibtex-guide/SKILL.md +107 -0
  180. package/skills/writing/citation/zotero-better-notes-guide/SKILL.md +121 -0
  181. package/skills/writing/citation/zotero-gpt-guide/SKILL.md +111 -0
  182. package/skills/writing/citation/zotero-mcp-guide/SKILL.md +164 -0
  183. package/skills/writing/citation/zotero-mdnotes-guide/SKILL.md +162 -0
  184. package/skills/writing/citation/zotero-reference-guide/SKILL.md +139 -0
  185. package/skills/writing/citation/zotero-scholar-guide/SKILL.md +294 -0
  186. package/skills/writing/citation/zotfile-attachment-guide/SKILL.md +140 -0
  187. package/skills/writing/composition/ml-paper-writing/SKILL.md +163 -0
  188. package/skills/writing/composition/paper-debugger-guide/SKILL.md +143 -0
  189. package/skills/writing/composition/scientific-writing-resources/SKILL.md +151 -0
  190. package/skills/writing/composition/scientific-writing-wrapper/SKILL.md +153 -0
  191. package/skills/writing/latex/latex-drawing-collection/SKILL.md +154 -0
  192. package/skills/writing/latex/latex-templates-collection/SKILL.md +159 -0
  193. package/skills/writing/latex/md-to-pdf-academic/SKILL.md +230 -0
  194. package/skills/writing/latex/tex-render-guide/SKILL.md +243 -0
  195. package/skills/writing/polish/academic-tone-guide/SKILL.md +209 -0
  196. package/skills/writing/polish/conciseness-editing-guide/SKILL.md +225 -0
  197. package/skills/writing/polish/paper-polish-guide/SKILL.md +160 -0
  198. package/skills/writing/templates/graphical-abstract-guide/SKILL.md +183 -0
  199. package/skills/writing/templates/novathesis-guide/SKILL.md +152 -0
  200. package/skills/writing/templates/scientific-article-pdf/SKILL.md +261 -0
  201. package/skills/writing/templates/sjtuthesis-guide/SKILL.md +197 -0
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  203. package/skills/literature/fulltext/repository-harvesting-guide/SKILL.md +0 -207
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- # Curated Writing Resources
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+ # Writing — Curated Skills
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+ > 57 recommended skills for academic writing, citation management, and document preparation.
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+
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+ ## Citation
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+ | Skill | Description |
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+ |-------|-------------|
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+ | [academic-citation-manager](../../skills/writing/citation/academic-citation-manager/) | Manage academic citations across BibTeX, APA, MLA, and Chicago formats |
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+ | [bibtex-management-guide](../../skills/writing/citation/bibtex-management-guide/) | Clean, format, deduplicate, and manage BibTeX bibliography files for LaTeX |
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+ | [citation-style-guide](../../skills/writing/citation/citation-style-guide/) | APA, MLA, Chicago citation format guide with CSL configuration |
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+ | [jabref-reference-guide](../../skills/writing/citation/jabref-reference-guide/) | Guide to JabRef open-source BibTeX and BibLaTeX reference manager |
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+ | [jasminum-zotero-guide](../../skills/writing/citation/jasminum-zotero-guide/) | Guide to Jasminum for retrieving CNKI Chinese academic metadata in Zotero |
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+ | [obsidian-citation-guide](../../skills/writing/citation/obsidian-citation-guide/) | Citation plugin for Obsidian note-taking with BibTeX support |
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+ | [obsidian-zotero-guide](../../skills/writing/citation/obsidian-zotero-guide/) | Insert citations and notes from Zotero into Obsidian knowledge bases |
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+ | [papersgpt-zotero-guide](../../skills/writing/citation/papersgpt-zotero-guide/) | AI plugin for Zotero with ChatGPT, Claude, and DeepSeek support |
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+ | [papis-cli-guide](../../skills/writing/citation/papis-cli-guide/) | Guide to Papis command-line document and bibliography manager for researchers |
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+ | [reference-manager-comparison](../../skills/writing/citation/reference-manager-comparison/) | Compare Zotero, Mendeley, EndNote, and Paperpile for research use |
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+ | [zotero-api](../../skills/writing/citation/zotero-api/) | Reference management library and collections API |
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+ | [zotero-better-bibtex-guide](../../skills/writing/citation/zotero-better-bibtex-guide/) | Guide to Better BibTeX for Zotero for LaTeX and BibTeX workflows |
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+ | [zotero-better-notes-guide](../../skills/writing/citation/zotero-better-notes-guide/) | Guide to Zotero Better Notes for comprehensive note-taking in research |
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+ | [zotero-gpt-guide](../../skills/writing/citation/zotero-gpt-guide/) | Guide to Zotero GPT for AI-powered research assistance within Zotero |
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+ | [zotero-mcp-guide](../../skills/writing/citation/zotero-mcp-guide/) | Guide to Zotero MCP for connecting Zotero library with AI assistants |
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+ | [zotero-mdnotes-guide](../../skills/writing/citation/zotero-mdnotes-guide/) | Export Zotero items and annotations to Markdown note files |
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+ | [zotero-reference-guide](../../skills/writing/citation/zotero-reference-guide/) | PDF references add-on for enriching Zotero library metadata |
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+ | [zotero-scholar-guide](../../skills/writing/citation/zotero-scholar-guide/) | Save papers with metadata to Zotero via its API programmatically |
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+ | [zotfile-attachment-guide](../../skills/writing/citation/zotfile-attachment-guide/) | Guide to ZotFile for Zotero attachment management, renaming, and syncing |
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- > Hand-picked resources for academic researchers working on composition, polishing, formatting, and citation management.
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  ## Composition
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- ### Writing Guides
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- - **[Writing Your Journal Article in Twelve Weeks (Belcher)](https://www.uchicago.edu/research/)** — Step-by-step workbook for turning a draft into a publishable paper; widely used in writing groups.
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- - **[The Craft of Research (Booth, Colomb, Williams)](https://press.uchicago.edu/ucp/books/book/chicago/C/bo23521678.html)** — Classic guide to planning, drafting, and revising research writing.
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- - **[How to Write a Great Research Paper (Simon Peyton Jones)](https://www.microsoft.com/en-us/research/academic-program/write-great-research-paper/)** — Concise advice from an experienced CS researcher; accompanying video talk is essential viewing.
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- - **[Explorations of Style (blog)](https://explorationsofstyle.com/)** — Rachael Cayley's blog on graduate-level academic writing; practical and discipline-agnostic.
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- ### Structure Templates
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- - **[IMRaD Structure Guide (NCBI)](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC442179/)** — Standard Introduction-Methods-Results-Discussion structure explained for biomedical papers.
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- - **[Heilmeier Catechism](https://www.darpa.mil/about/heilmeier-catechism)** DARPA's framework for articulating research goals; excellent for proposal introductions.
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+ | Skill | Description |
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+ |-------|-------------|
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+ | [abstract-writing-guide](../../skills/writing/composition/abstract-writing-guide/) | Craft structured research abstracts that maximize clarity and journal acceptance |
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+ | [discussion-writing-guide](../../skills/writing/composition/discussion-writing-guide/) | Write effective discussion sections that interpret results and impact |
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+ | [introduction-writing-guide](../../skills/writing/composition/introduction-writing-guide/) | Guide to writing effective research paper introductions |
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+ | [literature-review-writing](../../skills/writing/composition/literature-review-writing/) | Structure and write comprehensive literature reviews for any field |
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+ | [methods-section-guide](../../skills/writing/composition/methods-section-guide/) | Guide to writing clear and reproducible methodology sections |
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+ | [ml-paper-writing](../../skills/writing/composition/ml-paper-writing/) | Write ML/AI research papers targeting NeurIPS, ICML, and ICLR venues |
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+ | [paper-debugger-guide](../../skills/writing/composition/paper-debugger-guide/) | Multi-agent system for academic writing review and improvement |
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+ | [response-to-reviewers](../../skills/writing/composition/response-to-reviewers/) | Write effective point-by-point responses to peer reviewer comments for revisions |
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+ | [scientific-writing-guide](../../skills/writing/composition/scientific-writing-guide/) | Curated tools and techniques for scientific writing beyond LaTeX |
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+ | [scientific-writing-resources](../../skills/writing/composition/scientific-writing-resources/) | Curated tools and resources for effective scientific writing |
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+ | [scientific-writing-wrapper](../../skills/writing/composition/scientific-writing-wrapper/) | AI-powered scientific writing workflow from outline to polished draft |
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- ## Polish
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- ### Tools & Software
20
- - **[Grammarly](https://www.grammarly.com/)** — AI writing assistant for grammar, clarity, tone, and plagiarism detection.
21
- - **[Writefull](https://www.writefull.com/)** — Language feedback tool trained specifically on published academic text; integrates with Overleaf and Word.
22
- - **[LanguageTool](https://languagetool.org/)** — Open-source grammar checker supporting 30+ languages; self-hostable.
23
- - **[Hemingway Editor](https://hemingwayapp.com/)** — Highlights complex sentences, passive voice, and readability issues; forces concision.
51
+ ## Latex
24
52
 
25
- ### Style Guides
26
- - **[APA Style (7th ed.)](https://apastyle.apa.org/)** — Official APA manual; standard for social sciences, education, and psychology.
27
- - **[Chicago Manual of Style](https://www.chicagomanualofstyle.org/)** — Comprehensive guide for humanities writing and publishing.
28
- - **[IEEE Editorial Style Manual](https://journals.ieeeauthorcenter.ieee.org/your-role-in-article-production/ieee-editorial-style-manual/)** — Required style reference for all IEEE publications.
29
53
 
30
- ## LaTeX
54
+ | Skill | Description |
55
+ |-------|-------------|
56
+ | [bibliography-management-guide](../../skills/writing/latex/bibliography-management-guide/) | Manage references with BibLaTeX, natbib, and LaTeX bibliography styles |
57
+ | [latex-drawing-collection](../../skills/writing/latex/latex-drawing-collection/) | LaTeX drawing examples for Bayesian networks, tensors, and diagrams |
58
+ | [latex-drawing-guide](../../skills/writing/latex/latex-drawing-guide/) | TikZ and PGFPlots techniques for publication-quality scientific figures |
59
+ | [latex-ecosystem-guide](../../skills/writing/latex/latex-ecosystem-guide/) | Comprehensive guide to LaTeX editors, packages, and typesetting workflows |
60
+ | [latex-templates-collection](../../skills/writing/latex/latex-templates-collection/) | Collection of LaTeX templates for papers, presentations, and CVs |
61
+ | [math-typesetting-guide](../../skills/writing/latex/math-typesetting-guide/) | LaTeX math typesetting, equation formatting, and cross-referencing |
62
+ | [md-to-pdf-academic](../../skills/writing/latex/md-to-pdf-academic/) | Convert Markdown to publication-quality PDF with LaTeX math rendering |
63
+ | [overleaf-collaboration-guide](../../skills/writing/latex/overleaf-collaboration-guide/) | Guide to collaborative LaTeX editing with Overleaf |
64
+ | [tex-render-guide](../../skills/writing/latex/tex-render-guide/) | Render LaTeX math expressions to images in PNG, JPEG, and SVG |
65
+ | [tikz-diagrams-guide](../../skills/writing/latex/tikz-diagrams-guide/) | Create publication-quality scientific diagrams with TikZ in LaTeX |
31
66
 
32
- ### Editors & Environments
33
- - **[Overleaf](https://www.overleaf.com/)** — Collaborative online LaTeX editor; 1-click submission to journals; free tier available.
34
- - **[TeXstudio](https://www.texstudio.org/)** — Feature-rich open-source desktop LaTeX editor with inline preview.
35
- - **[Typst](https://typst.app/)** — Modern typesetting system designed as a simpler alternative to LaTeX; growing fast.
36
67
 
37
- ### Packages & References
38
- - **[CTAN](https://ctan.org/)** — Comprehensive TeX Archive Network; the canonical package repository.
39
- - **[LaTeX Wikibook](https://en.wikibooks.org/wiki/LaTeX)** — Community-maintained, beginner-friendly LaTeX reference.
40
- - **[TikZ/PGF Manual](https://tikz.dev/)** — The standard for programmatic figure drawing in LaTeX.
68
+ ## Polish
41
69
 
42
- ## Templates
43
70
 
44
- ### Journal & Conference Templates
45
- - **[Overleaf Templates Gallery](https://www.overleaf.com/latex/templates)** — Thousands of publisher-official and community LaTeX templates.
46
- - **[IEEE Template Selector](https://template-selector.ieee.org/)** Official tool to find the correct IEEE template for your target publication.
47
- - **[Springer LaTeX Templates](https://www.springer.com/gp/authors-editors/book-authors-editors/your-publication-journey/manuscript-preparation)** Official Springer Nature templates for books and journals.
48
- - **[Elsevier LaTeX Templates](https://www.elsevier.com/researcher/author/policies-and-guidelines/latex-instructions)** elsarticle class and documentation for all Elsevier journals.
71
+ | Skill | Description |
72
+ |-------|-------------|
73
+ | [academic-tone-guide](../../skills/writing/polish/academic-tone-guide/) | Adjust writing tone and register for academic audiences and venues |
74
+ | [academic-translation-guide](../../skills/writing/polish/academic-translation-guide/) | Academic translation, post-editing, and Chinglish correction guide |
75
+ | [academic-writing-refiner](../../skills/writing/polish/academic-writing-refiner/) | Checklist-driven academic English polishing and Chinglish correction |
76
+ | [ai-writing-humanizer](../../skills/writing/polish/ai-writing-humanizer/) | Remove AI-generated patterns to produce natural, authentic academic writing |
77
+ | [conciseness-editing-guide](../../skills/writing/polish/conciseness-editing-guide/) | Eliminate wordiness and redundancy in academic prose for clarity |
78
+ | [grammar-checker-guide](../../skills/writing/polish/grammar-checker-guide/) | Use grammar and style checking tools to polish academic manuscripts |
79
+ | [paper-polish-guide](../../skills/writing/polish/paper-polish-guide/) | Review and polish LaTeX research papers for clarity and style |
80
+ | [plagiarism-detection-guide](../../skills/writing/polish/plagiarism-detection-guide/) | Use plagiarism detection tools and ensure manuscript originality |
49
81
 
50
- ## Citation Management
51
82
 
52
- ### Reference Managers
53
- - **[Zotero](https://www.zotero.org/)** — Free, open-source reference manager with browser connector, PDF annotation, and Word/LibreOffice plugins.
54
- - **[Paperpile](https://paperpile.com/)** — Fast, clean reference manager with tight Google Docs and Overleaf integration.
55
- - **[Mendeley](https://www.mendeley.com/)** — Free reference manager and academic social network by Elsevier; good PDF reader.
56
- - **[JabRef](https://www.jabref.org/)** — Open-source BibTeX/BibLaTeX manager; ideal for LaTeX-centric workflows.
83
+ ## Templates
84
+
57
85
 
58
- ### Format & Conversion Tools
59
- - **[Citation Style Language (CSL)](https://citationstyles.org/)** — Open repository of 10,000+ citation styles used by Zotero, Mendeley, and Pandoc.
60
- - **[doi2bib](https://www.doi2bib.org/)** Paste a DOI, get a BibTeX entry instantly.
61
- - **[AnyStyle](https://anystyle.io/)** AI-powered parser that extracts structured references from plain-text bibliographies.
86
+ | Skill | Description |
87
+ |-------|-------------|
88
+ | [beamer-presentation-guide](../../skills/writing/templates/beamer-presentation-guide/) | Guide to creating academic presentations with LaTeX Beamer |
89
+ | [conference-paper-template](../../skills/writing/templates/conference-paper-template/) | Templates and formatting guides for major academic conference submissions |
90
+ | [graphical-abstract-guide](../../skills/writing/templates/graphical-abstract-guide/) | Create SVG graphical abstracts for journal paper submissions |
91
+ | [novathesis-guide](../../skills/writing/templates/novathesis-guide/) | LaTeX thesis template supporting multiple universities and formats |
92
+ | [scientific-article-pdf](../../skills/writing/templates/scientific-article-pdf/) | Generate publication-ready scientific article PDFs from templates |
93
+ | [sjtuthesis-guide](../../skills/writing/templates/sjtuthesis-guide/) | Write SJTU theses using the SJTUThesis LaTeX template with full compliance |
94
+ | [thesis-template-guide](../../skills/writing/templates/thesis-template-guide/) | Set up LaTeX templates for PhD and Master's thesis documents |
95
+ | [thesis-writing-guide](../../skills/writing/templates/thesis-writing-guide/) | Templates, formatting rules, and strategies for thesis and dissertation writing |
96
+ | [thuthesis-guide](../../skills/writing/templates/thuthesis-guide/) | Write Tsinghua University theses using the ThuThesis LaTeX template |
@@ -0,0 +1,37 @@
1
+ {
2
+ "id": "confluence-mcp",
3
+ "name": "Confluence MCP",
4
+ "description": "Atlassian Confluence Cloud integration — search, read, and manage wiki pages and spaces for team-based research documentation.",
5
+ "category": "cloud-docs",
6
+ "install": {
7
+ "runtime": "node",
8
+ "package": "@anthropic/mcp-server-atlassian-confluence",
9
+ "command": "npm install @anthropic/mcp-server-atlassian-confluence"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "CONFLUENCE_URL": {
14
+ "description": "Confluence Cloud instance URL (e.g. https://yoursite.atlassian.net)",
15
+ "required": true
16
+ },
17
+ "CONFLUENCE_USERNAME": {
18
+ "description": "Atlassian account email address",
19
+ "required": true
20
+ },
21
+ "CONFLUENCE_API_TOKEN": {
22
+ "description": "Atlassian API token (generate at id.atlassian.com)",
23
+ "required": true
24
+ }
25
+ }
26
+ },
27
+ "tools": [
28
+ "search_content",
29
+ "get_page",
30
+ "create_page",
31
+ "update_page",
32
+ "list_spaces",
33
+ "get_space"
34
+ ],
35
+ "verified": false,
36
+ "source": "https://github.com/aashari/mcp-server-atlassian-confluence"
37
+ }
@@ -0,0 +1,35 @@
1
+ {
2
+ "id": "google-drive-mcp",
3
+ "name": "Google Drive MCP",
4
+ "description": "Google Drive document access for AI — search, read, and list files across Google Docs, Sheets, Slides, and PDFs stored in Drive.",
5
+ "category": "cloud-docs",
6
+ "install": {
7
+ "runtime": "node",
8
+ "package": "@anthropic/mcp-server-google-drive",
9
+ "command": "npm install @anthropic/mcp-server-google-drive"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "GOOGLE_CLIENT_ID": {
14
+ "description": "Google OAuth 2.0 client ID",
15
+ "required": true
16
+ },
17
+ "GOOGLE_CLIENT_SECRET": {
18
+ "description": "Google OAuth 2.0 client secret",
19
+ "required": true
20
+ },
21
+ "GOOGLE_REFRESH_TOKEN": {
22
+ "description": "Google OAuth 2.0 refresh token",
23
+ "required": true
24
+ }
25
+ }
26
+ },
27
+ "tools": [
28
+ "search_files",
29
+ "read_file",
30
+ "list_files",
31
+ "get_file_metadata"
32
+ ],
33
+ "verified": false,
34
+ "source": "https://github.com/anthropics/mcp-server-google-drive"
35
+ }
@@ -0,0 +1,29 @@
1
+ {
2
+ "id": "notion-mcp",
3
+ "name": "Notion MCP",
4
+ "description": "Notion integration for AI assistants — search, read, create, and update Notion pages, databases, and blocks directly from your research workflow.",
5
+ "category": "cloud-docs",
6
+ "install": {
7
+ "runtime": "node",
8
+ "package": "notion-mcp",
9
+ "command": "npm install notion-mcp"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "NOTION_TOKEN": {
14
+ "description": "Notion internal integration token (starts with ntn_)",
15
+ "required": true
16
+ }
17
+ }
18
+ },
19
+ "tools": [
20
+ "search_pages",
21
+ "read_page",
22
+ "create_page",
23
+ "update_page",
24
+ "query_database",
25
+ "list_databases"
26
+ ],
27
+ "verified": false,
28
+ "source": "https://github.com/Badhansen/notion-mcp"
29
+ }
@@ -0,0 +1,29 @@
1
+ {
2
+ "id": "discord-mcp",
3
+ "name": "Discord MCP",
4
+ "description": "Discord server integration for research teams — send messages, read channels, manage threads, and interact with server members.",
5
+ "category": "communication",
6
+ "install": {
7
+ "runtime": "node",
8
+ "package": "mcp-discord",
9
+ "command": "npm install mcp-discord"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "DISCORD_BOT_TOKEN": {
14
+ "description": "Discord bot token from the Developer Portal",
15
+ "required": true
16
+ }
17
+ }
18
+ },
19
+ "tools": [
20
+ "send_message",
21
+ "read_messages",
22
+ "list_channels",
23
+ "list_guilds",
24
+ "create_thread",
25
+ "add_reaction"
26
+ ],
27
+ "verified": false,
28
+ "source": "https://github.com/v-3/mcp-discord"
29
+ }
@@ -0,0 +1,29 @@
1
+ {
2
+ "id": "slack-mcp",
3
+ "name": "Slack MCP",
4
+ "description": "Slack workspace integration — send messages, search conversations, list channels, and manage threads for research team communication.",
5
+ "category": "communication",
6
+ "install": {
7
+ "runtime": "node",
8
+ "package": "@anthropic/mcp-server-slack",
9
+ "command": "npm install @anthropic/mcp-server-slack"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "SLACK_BOT_TOKEN": {
14
+ "description": "Slack Bot User OAuth token (starts with xoxb-)",
15
+ "required": true
16
+ }
17
+ }
18
+ },
19
+ "tools": [
20
+ "send_message",
21
+ "search_messages",
22
+ "list_channels",
23
+ "read_channel_history",
24
+ "reply_to_thread",
25
+ "list_users"
26
+ ],
27
+ "verified": false,
28
+ "source": "https://github.com/anthropics/mcp-server-slack"
29
+ }
@@ -0,0 +1,28 @@
1
+ {
2
+ "id": "telegram-mcp",
3
+ "name": "Telegram MCP",
4
+ "description": "Telegram bot integration — send and receive messages, manage groups, and share files through Telegram for research collaboration.",
5
+ "category": "communication",
6
+ "install": {
7
+ "runtime": "node",
8
+ "package": "mcp-telegram",
9
+ "command": "npm install mcp-telegram"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "TELEGRAM_BOT_TOKEN": {
14
+ "description": "Telegram bot token from @BotFather",
15
+ "required": true
16
+ }
17
+ }
18
+ },
19
+ "tools": [
20
+ "send_message",
21
+ "read_updates",
22
+ "send_document",
23
+ "get_chat_info",
24
+ "list_chat_members"
25
+ ],
26
+ "verified": false,
27
+ "source": "https://github.com/nicekid1/mcp-telegram"
28
+ }
@@ -0,0 +1,37 @@
1
+ {
2
+ "id": "neo4j-mcp",
3
+ "name": "Neo4j MCP",
4
+ "description": "Neo4j graph database for knowledge graphs — run Cypher queries, traverse relationships, and build citation or concept graphs for research.",
5
+ "category": "database",
6
+ "install": {
7
+ "runtime": "python",
8
+ "package": "mcp-neo4j",
9
+ "command": "pip install mcp-neo4j"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "NEO4J_URI": {
14
+ "description": "Neo4j connection URI (e.g. bolt://localhost:7687)",
15
+ "required": true
16
+ },
17
+ "NEO4J_USERNAME": {
18
+ "description": "Neo4j database username",
19
+ "required": true
20
+ },
21
+ "NEO4J_PASSWORD": {
22
+ "description": "Neo4j database password",
23
+ "required": true
24
+ }
25
+ }
26
+ },
27
+ "tools": [
28
+ "run_cypher_query",
29
+ "get_node",
30
+ "get_relationships",
31
+ "create_node",
32
+ "create_relationship",
33
+ "get_schema"
34
+ ],
35
+ "verified": false,
36
+ "source": "https://github.com/neo4j-contrib/mcp-neo4j"
37
+ }
@@ -0,0 +1,28 @@
1
+ {
2
+ "id": "postgres-mcp",
3
+ "name": "PostgreSQL MCP",
4
+ "description": "PostgreSQL database integration — run SQL queries, inspect schemas, and manage tables in PostgreSQL databases for structured research data.",
5
+ "category": "database",
6
+ "install": {
7
+ "runtime": "node",
8
+ "package": "@anthropic/mcp-server-postgres",
9
+ "command": "npm install @anthropic/mcp-server-postgres"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "POSTGRES_CONNECTION_STRING": {
14
+ "description": "PostgreSQL connection string (e.g. postgresql://user:pass@host:5432/dbname)",
15
+ "required": true
16
+ }
17
+ }
18
+ },
19
+ "tools": [
20
+ "execute_query",
21
+ "list_tables",
22
+ "describe_table",
23
+ "list_schemas",
24
+ "read_query"
25
+ ],
26
+ "verified": false,
27
+ "source": "https://github.com/anthropics/mcp-server-postgres"
28
+ }
@@ -0,0 +1,29 @@
1
+ {
2
+ "id": "sqlite-mcp",
3
+ "name": "SQLite MCP",
4
+ "description": "SQLite database operations — execute queries, inspect schemas, create tables, and manage local SQLite databases for research data storage.",
5
+ "category": "database",
6
+ "install": {
7
+ "runtime": "python",
8
+ "package": "mcp-server-sqlite",
9
+ "command": "pip install mcp-server-sqlite"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "SQLITE_DB_PATH": {
14
+ "description": "Path to the SQLite database file",
15
+ "required": true
16
+ }
17
+ }
18
+ },
19
+ "tools": [
20
+ "execute_query",
21
+ "list_tables",
22
+ "describe_table",
23
+ "create_table",
24
+ "insert_data",
25
+ "read_query"
26
+ ],
27
+ "verified": false,
28
+ "source": "https://github.com/anthropics/mcp-server-sqlite"
29
+ }
@@ -0,0 +1,31 @@
1
+ {
2
+ "id": "github-mcp",
3
+ "name": "GitHub MCP",
4
+ "description": "GitHub repository and issue management — create issues, manage pull requests, search repositories, and access code for open-source research projects.",
5
+ "category": "dev-platform",
6
+ "install": {
7
+ "runtime": "node",
8
+ "package": "@anthropic/mcp-server-github",
9
+ "command": "npm install @anthropic/mcp-server-github"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "GITHUB_TOKEN": {
14
+ "description": "GitHub personal access token (classic or fine-grained)",
15
+ "required": true
16
+ }
17
+ }
18
+ },
19
+ "tools": [
20
+ "search_repositories",
21
+ "get_repository",
22
+ "list_issues",
23
+ "create_issue",
24
+ "get_pull_request",
25
+ "create_pull_request",
26
+ "get_file_contents",
27
+ "search_code"
28
+ ],
29
+ "verified": false,
30
+ "source": "https://github.com/anthropics/mcp-server-github"
31
+ }
@@ -0,0 +1,34 @@
1
+ {
2
+ "id": "gitlab-mcp",
3
+ "name": "GitLab MCP",
4
+ "description": "GitLab project management — manage repositories, issues, merge requests, and CI/CD pipelines for research software development.",
5
+ "category": "dev-platform",
6
+ "install": {
7
+ "runtime": "node",
8
+ "package": "mcp-server-gitlab",
9
+ "command": "npm install mcp-server-gitlab"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "GITLAB_TOKEN": {
14
+ "description": "GitLab personal access token",
15
+ "required": true
16
+ },
17
+ "GITLAB_URL": {
18
+ "description": "GitLab instance URL (defaults to https://gitlab.com)",
19
+ "required": false
20
+ }
21
+ }
22
+ },
23
+ "tools": [
24
+ "list_projects",
25
+ "get_project",
26
+ "list_issues",
27
+ "create_issue",
28
+ "list_merge_requests",
29
+ "get_file_contents",
30
+ "search_projects"
31
+ ],
32
+ "verified": false,
33
+ "source": "https://github.com/theailanguage/mcp-server-gitlab"
34
+ }
@@ -0,0 +1,40 @@
1
+ {
2
+ "id": "imap-smtp-mcp",
3
+ "name": "IMAP/SMTP Email MCP",
4
+ "description": "Universal IMAP/SMTP email server — connect to any email provider via standard protocols for reading, searching, and sending emails.",
5
+ "category": "email",
6
+ "install": {
7
+ "runtime": "python",
8
+ "package": "email-mcp",
9
+ "command": "pip install email-mcp"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "IMAP_HOST": {
14
+ "description": "IMAP server hostname (e.g. imap.gmail.com)",
15
+ "required": true
16
+ },
17
+ "SMTP_HOST": {
18
+ "description": "SMTP server hostname (e.g. smtp.gmail.com)",
19
+ "required": true
20
+ },
21
+ "EMAIL_USERNAME": {
22
+ "description": "Email account username or address",
23
+ "required": true
24
+ },
25
+ "EMAIL_PASSWORD": {
26
+ "description": "Email account password or app-specific password",
27
+ "required": true
28
+ }
29
+ }
30
+ },
31
+ "tools": [
32
+ "search_emails",
33
+ "read_email",
34
+ "send_email",
35
+ "list_folders",
36
+ "move_email"
37
+ ],
38
+ "verified": false,
39
+ "source": "https://github.com/codefuturist/email-mcp"
40
+ }
@@ -0,0 +1,37 @@
1
+ {
2
+ "id": "gmail-mcp",
3
+ "name": "Gmail MCP",
4
+ "description": "Gmail email integration — search, read, send, and manage emails through Gmail for academic correspondence and collaboration.",
5
+ "category": "email",
6
+ "install": {
7
+ "runtime": "node",
8
+ "package": "@anthropic/mcp-server-gmail",
9
+ "command": "npm install @anthropic/mcp-server-gmail"
10
+ },
11
+ "config": {
12
+ "env": {
13
+ "GOOGLE_CLIENT_ID": {
14
+ "description": "Google OAuth 2.0 client ID",
15
+ "required": true
16
+ },
17
+ "GOOGLE_CLIENT_SECRET": {
18
+ "description": "Google OAuth 2.0 client secret",
19
+ "required": true
20
+ },
21
+ "GOOGLE_REFRESH_TOKEN": {
22
+ "description": "Google OAuth 2.0 refresh token with Gmail scope",
23
+ "required": true
24
+ }
25
+ }
26
+ },
27
+ "tools": [
28
+ "search_emails",
29
+ "read_email",
30
+ "send_email",
31
+ "reply_to_email",
32
+ "list_labels",
33
+ "list_threads"
34
+ ],
35
+ "verified": false,
36
+ "source": "https://github.com/anthropics/mcp-server-gmail"
37
+ }