@weng-lab/visualization 2.6.0-beta.0 → 2.6.0-beta.1

package/dist/visualization.es105.js

@@ -1,40 +1,225 @@
-import { c as T } from "react/compiler-runtime";
-import { useRef as _, useEffect as v } from "react";
-import { cellKey as R } from "./visualization.es99.js";
-function w(f, e, l, t) {
-  return t - l > e || l < f ? l : t > f + e ? t - e : f;
-}
-function O(f) {
-  const e = T(12), {
-    mainPaneRef: l,
-    selectedCells: t,
-    scrollToSelection: n,
-    binWidth: o,
-    viewportWidth: c
-  } = f;
-  let i;
-  e[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (i = /* @__PURE__ */ new Set(), e[0] = i) : i = e[0];
-  const p = _(i);
-  let r;
-  e[1] !== o || e[2] !== l || e[3] !== n || e[4] !== t || e[5] !== c ? (r = () => {
-    const g = p.current, y = t ?? [], C = y.filter((s) => !g.has(R(s)));
-    p.current = new Set(y.map(R));
-    const u = l.current;
-    if (!n || !u || C.length === 0)
-      return;
-    let a = 1 / 0, h = -1 / 0;
-    for (const s of C)
-      s.column < a && (a = s.column), s.column > h && (h = s.column);
-    const K = a * o, S = (h + 1) * o, L = w(u.scrollLeft, c, K, S);
-    L !== u.scrollLeft && u.scrollTo({
-      left: L,
-      behavior: "smooth"
+import { __module as O } from "./visualization.es106.js";
+import { __require as q } from "./visualization.es107.js";
+var j = O.exports, x;
+function W() {
+  return x ? O.exports : (x = 1, (function(b, Q) {
+    (function(c, d) {
+      b.exports = d(q());
+    })(j, function(F) {
+      return (
+        /******/
+        (function(c) {
+          var d = {};
+          function o(i) {
+            if (d[i])
+              return d[i].exports;
+            var n = d[i] = {
+              /******/
+              i,
+              /******/
+              l: !1,
+              /******/
+              exports: {}
+              /******/
+            };
+            return c[i].call(n.exports, n, n.exports, o), n.l = !0, n.exports;
+          }
+          return o.m = c, o.c = d, o.i = function(i) {
+            return i;
+          }, o.d = function(i, n, s) {
+            o.o(i, n) || Object.defineProperty(i, n, {
+              /******/
+              configurable: !1,
+              /******/
+              enumerable: !0,
+              /******/
+              get: s
+              /******/
+            });
+          }, o.n = function(i) {
+            var n = i && i.__esModule ? (
+              /******/
+              function() {
+                return i.default;
+              }
+            ) : (
+              /******/
+              function() {
+                return i;
+              }
+            );
+            return o.d(n, "a", n), n;
+          }, o.o = function(i, n) {
+            return Object.prototype.hasOwnProperty.call(i, n);
+          }, o.p = "", o(o.s = 1);
+        })([
+          /* 0 */
+          /***/
+          (function(c, d) {
+            c.exports = F;
+          }),
+          /* 1 */
+          /***/
+          (function(c, d, o) {
+            var i = o(0).layoutBase.LayoutConstants, n = o(0).layoutBase.FDLayoutConstants, s = o(0).CoSEConstants, H = o(0).CoSELayout, G = o(0).CoSENode, B = o(0).layoutBase.PointD, V = o(0).layoutBase.DimensionD, Y = {
+              // Called on `layoutready`
+              ready: function() {
+              },
+              // Called on `layoutstop`
+              stop: function() {
+              },
+              // 'draft', 'default' or 'proof" 
+              // - 'draft' fast cooling rate 
+              // - 'default' moderate cooling rate 
+              // - "proof" slow cooling rate
+              quality: "default",
+              // include labels in node dimensions
+              nodeDimensionsIncludeLabels: !1,
+              // number of ticks per frame; higher is faster but more jerky
+              refresh: 30,
+              // Whether to fit the network view after when done
+              fit: !0,
+              // Padding on fit
+              padding: 10,
+              // Whether to enable incremental mode
+              randomize: !0,
+              // Node repulsion (non overlapping) multiplier
+              nodeRepulsion: 4500,
+              // Ideal edge (non nested) length
+              idealEdgeLength: 50,
+              // Divisor to compute edge forces
+              edgeElasticity: 0.45,
+              // Nesting factor (multiplier) to compute ideal edge length for nested edges
+              nestingFactor: 0.1,
+              // Gravity force (constant)
+              gravity: 0.25,
+              // Maximum number of iterations to perform
+              numIter: 2500,
+              // For enabling tiling
+              tile: !0,
+              // Type of layout animation. The option set is {'during', 'end', false}
+              animate: "end",
+              // Duration for animate:end
+              animationDuration: 500,
+              // Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)
+              tilingPaddingVertical: 10,
+              // Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)
+              tilingPaddingHorizontal: 10,
+              // Gravity range (constant) for compounds
+              gravityRangeCompound: 1.5,
+              // Gravity force (constant) for compounds
+              gravityCompound: 1,
+              // Gravity range (constant)
+              gravityRange: 3.8,
+              // Initial cooling factor for incremental layout
+              initialEnergyOnIncremental: 0.5
+            };
+            function h(u, t) {
+              var l = {};
+              for (var r in u)
+                l[r] = u[r];
+              for (var r in t)
+                l[r] = t[r];
+              return l;
+            }
+            function p(u) {
+              this.options = h(Y, u), w(this.options);
+            }
+            var w = function(t) {
+              t.nodeRepulsion != null && (s.DEFAULT_REPULSION_STRENGTH = n.DEFAULT_REPULSION_STRENGTH = t.nodeRepulsion), t.idealEdgeLength != null && (s.DEFAULT_EDGE_LENGTH = n.DEFAULT_EDGE_LENGTH = t.idealEdgeLength), t.edgeElasticity != null && (s.DEFAULT_SPRING_STRENGTH = n.DEFAULT_SPRING_STRENGTH = t.edgeElasticity), t.nestingFactor != null && (s.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = n.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = t.nestingFactor), t.gravity != null && (s.DEFAULT_GRAVITY_STRENGTH = n.DEFAULT_GRAVITY_STRENGTH = t.gravity), t.numIter != null && (s.MAX_ITERATIONS = n.MAX_ITERATIONS = t.numIter), t.gravityRange != null && (s.DEFAULT_GRAVITY_RANGE_FACTOR = n.DEFAULT_GRAVITY_RANGE_FACTOR = t.gravityRange), t.gravityCompound != null && (s.DEFAULT_COMPOUND_GRAVITY_STRENGTH = n.DEFAULT_COMPOUND_GRAVITY_STRENGTH = t.gravityCompound), t.gravityRangeCompound != null && (s.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = n.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = t.gravityRangeCompound), t.initialEnergyOnIncremental != null && (s.DEFAULT_COOLING_FACTOR_INCREMENTAL = n.DEFAULT_COOLING_FACTOR_INCREMENTAL = t.initialEnergyOnIncremental), t.quality == "draft" ? i.QUALITY = 0 : t.quality == "proof" ? i.QUALITY = 2 : i.QUALITY = 1, s.NODE_DIMENSIONS_INCLUDE_LABELS = n.NODE_DIMENSIONS_INCLUDE_LABELS = i.NODE_DIMENSIONS_INCLUDE_LABELS = t.nodeDimensionsIncludeLabels, s.DEFAULT_INCREMENTAL = n.DEFAULT_INCREMENTAL = i.DEFAULT_INCREMENTAL = !t.randomize, s.ANIMATE = n.ANIMATE = i.ANIMATE = t.animate, s.TILE = t.tile, s.TILING_PADDING_VERTICAL = typeof t.tilingPaddingVertical == "function" ? t.tilingPaddingVertical.call() : t.tilingPaddingVertical, s.TILING_PADDING_HORIZONTAL = typeof t.tilingPaddingHorizontal == "function" ? t.tilingPaddingHorizontal.call() : t.tilingPaddingHorizontal;
+            };
+            p.prototype.run = function() {
+              var u, t, l = this.options;
+              this.idToLNode = {};
+              var r = this.layout = new H(), a = this;
+              a.stopped = !1, this.cy = this.options.cy, this.cy.trigger({ type: "layoutstart", layout: this });
+              var e = r.newGraphManager();
+              this.gm = e;
+              var g = this.options.eles.nodes(), f = this.options.eles.edges();
+              this.root = e.addRoot(), this.processChildrenList(this.root, this.getTopMostNodes(g), r);
+              for (var E = 0; E < f.length; E++) {
+                var A = f[E], v = this.idToLNode[A.data("source")], D = this.idToLNode[A.data("target")];
+                if (v !== D && v.getEdgesBetween(D).length == 0) {
+                  var N = e.add(r.newEdge(), v, D);
+                  N.id = A.id();
+                }
+              }
+              var U = function(L, m) {
+                typeof L == "number" && (L = m);
+                var I = L.data("id"), R = a.idToLNode[I];
+                return {
+                  x: R.getRect().getCenterX(),
+                  y: R.getRect().getCenterY()
+                };
+              }, z = function S() {
+                for (var L = function() {
+                  l.fit && l.cy.fit(l.eles, l.padding), u || (u = !0, a.cy.one("layoutready", l.ready), a.cy.trigger({ type: "layoutready", layout: a }));
+                }, m = a.options.refresh, I, R = 0; R < m && !I; R++)
+                  I = a.stopped || a.layout.tick();
+                if (I) {
+                  r.checkLayoutSuccess() && !r.isSubLayout && r.doPostLayout(), r.tilingPostLayout && r.tilingPostLayout(), r.isLayoutFinished = !0, a.options.eles.nodes().positions(U), L(), a.cy.one("layoutstop", a.options.stop), a.cy.trigger({ type: "layoutstop", layout: a }), t && cancelAnimationFrame(t), u = !1;
+                  return;
+                }
+                var C = a.layout.getPositionsData();
+                l.eles.nodes().positions(function(y, k) {
+                  if (typeof y == "number" && (y = k), !y.isParent()) {
+                    for (var M = y.id(), T = C[M], _ = y; T == null && (T = C[_.data("parent")] || C["DummyCompound_" + _.data("parent")], C[M] = T, _ = _.parent()[0], _ != null); )
+                      ;
+                    return T != null ? {
+                      x: T.x,
+                      y: T.y
+                    } : {
+                      x: y.position("x"),
+                      y: y.position("y")
+                    };
+                  }
+                }), L(), t = requestAnimationFrame(S);
+              };
+              return r.addListener("layoutstarted", function() {
+                a.options.animate === "during" && (t = requestAnimationFrame(z));
+              }), r.runLayout(), this.options.animate !== "during" && (a.options.eles.nodes().not(":parent").layoutPositions(a, a.options, U), u = !1), this;
+            }, p.prototype.getTopMostNodes = function(u) {
+              for (var t = {}, l = 0; l < u.length; l++)
+                t[u[l].id()] = !0;
+              var r = u.filter(function(a, e) {
+                typeof a == "number" && (a = e);
+                for (var g = a.parent()[0]; g != null; ) {
+                  if (t[g.id()])
+                    return !1;
+                  g = g.parent()[0];
+                }
+                return !0;
+              });
+              return r;
+            }, p.prototype.processChildrenList = function(u, t, l) {
+              for (var r = t.length, a = 0; a < r; a++) {
+                var e = t[a], g = e.children(), f, E = e.layoutDimensions({
+                  nodeDimensionsIncludeLabels: this.options.nodeDimensionsIncludeLabels
+                });
+                if (e.outerWidth() != null && e.outerHeight() != null ? f = u.add(new G(l.graphManager, new B(e.position("x") - E.w / 2, e.position("y") - E.h / 2), new V(parseFloat(E.w), parseFloat(E.h)))) : f = u.add(new G(this.graphManager)), f.id = e.data("id"), f.paddingLeft = parseInt(e.css("padding")), f.paddingTop = parseInt(e.css("padding")), f.paddingRight = parseInt(e.css("padding")), f.paddingBottom = parseInt(e.css("padding")), this.options.nodeDimensionsIncludeLabels && e.isParent()) {
+                  var A = e.boundingBox({ includeLabels: !0, includeNodes: !1 }).w, v = e.boundingBox({ includeLabels: !0, includeNodes: !1 }).h, D = e.css("text-halign");
+                  f.labelWidth = A, f.labelHeight = v, f.labelPos = D;
+                }
+                if (this.idToLNode[e.data("id")] = f, isNaN(f.rect.x) && (f.rect.x = 0), isNaN(f.rect.y) && (f.rect.y = 0), g != null && g.length > 0) {
+                  var N;
+                  N = l.getGraphManager().add(l.newGraph(), f), this.processChildrenList(N, g, l);
+                }
+              }
+            }, p.prototype.stop = function() {
+              return this.stopped = !0, this;
+            };
+            var P = function(t) {
+              t("layout", "cose-bilkent", p);
+            };
+            typeof cytoscape < "u" && P(cytoscape), c.exports = P;
+          })
+          /******/
+        ])
+      );
     });
-  }, e[1] = o, e[2] = l, e[3] = n, e[4] = t, e[5] = c, e[6] = r) : r = e[6];
-  let m;
-  e[7] !== o || e[8] !== n || e[9] !== t || e[10] !== c ? (m = [t, n, o, c], e[7] = o, e[8] = n, e[9] = t, e[10] = c, e[11] = m) : m = e[11], v(r, m);
+  })(O), O.exports);
 }
 export {
-  O as useScrollToSelection
+  W as __require
 };
 //# sourceMappingURL=visualization.es105.js.map

package/dist/visualization.es105.js.map

@@ -1 +1 @@
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higher is faster but more jerky\n  refresh: 30,\n  // Whether to fit the network view after when done\n  fit: true,\n  // Padding on fit\n  padding: 10,\n  // Whether to enable incremental mode\n  randomize: true,\n  // Node repulsion (non overlapping) multiplier\n  nodeRepulsion: 4500,\n  // Ideal edge (non nested) length\n  idealEdgeLength: 50,\n  // Divisor to compute edge forces\n  edgeElasticity: 0.45,\n  // Nesting factor (multiplier) to compute ideal edge length for nested edges\n  nestingFactor: 0.1,\n  // Gravity force (constant)\n  gravity: 0.25,\n  // Maximum number of iterations to perform\n  numIter: 2500,\n  // For enabling tiling\n  tile: true,\n  // Type of layout animation. The option set is {'during', 'end', false}\n  animate: 'end',\n  // Duration for animate:end\n  animationDuration: 500,\n  // Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)\n  tilingPaddingVertical: 10,\n  // Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)\n  tilingPaddingHorizontal: 10,\n  // Gravity range (constant) for compounds\n  gravityRangeCompound: 1.5,\n  // Gravity force (constant) for compounds\n  gravityCompound: 1.0,\n  // Gravity range (constant)\n  gravityRange: 3.8,\n  // Initial cooling factor for incremental layout\n  initialEnergyOnIncremental: 0.5\n};\n\nfunction extend(defaults, options) {\n  var obj = {};\n\n  for (var i in defaults) {\n    obj[i] = defaults[i];\n  }\n\n  for (var i in options) {\n    obj[i] = options[i];\n  }\n\n  return obj;\n};\n\nfunction _CoSELayout(_options) {\n  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(options.gravityRange != null) CoSEConstants.DEFAULT_GRAVITY_RANGE_FACTOR = FDLayoutConstants.DEFAULT_GRAVITY_RANGE_FACTOR = options.gravityRange;\n  if (options.gravityCompound != null) CoSEConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH = FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH = options.gravityCompound;\n  if (options.gravityRangeCompound != null) CoSEConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = options.gravityRangeCompound;\n  if (options.initialEnergyOnIncremental != null) CoSEConstants.DEFAULT_COOLING_FACTOR_INCREMENTAL = FDLayoutConstants.DEFAULT_COOLING_FACTOR_INCREMENTAL = options.initialEnergyOnIncremental;\n\n  if (options.quality == 'draft') LayoutConstants.QUALITY = 0;else if (options.quality == 'proof') LayoutConstants.QUALITY = 2;else LayoutConstants.QUALITY = 1;\n\n  CoSEConstants.NODE_DIMENSIONS_INCLUDE_LABELS = FDLayoutConstants.NODE_DIMENSIONS_INCLUDE_LABELS = LayoutConstants.NODE_DIMENSIONS_INCLUDE_LABELS = options.nodeDimensionsIncludeLabels;\n  CoSEConstants.DEFAULT_INCREMENTAL = FDLayoutConstants.DEFAULT_INCREMENTAL = LayoutConstants.DEFAULT_INCREMENTAL = !options.randomize;\n  CoSEConstants.ANIMATE = FDLayoutConstants.ANIMATE = LayoutConstants.ANIMATE = options.animate;\n  CoSEConstants.TILE = options.tile;\n  CoSEConstants.TILING_PADDING_VERTICAL = typeof options.tilingPaddingVertical === 'function' ? options.tilingPaddingVertical.call() : options.tilingPaddingVertical;\n  CoSEConstants.TILING_PADDING_HORIZONTAL = typeof options.tilingPaddingHorizontal === 'function' ? options.tilingPaddingHorizontal.call() : options.tilingPaddingHorizontal;\n};\n\n_CoSELayout.prototype.run = function () {\n  var ready;\n  var frameId;\n  var options = this.options;\n  var idToLNode = this.idToLNode = {};\n  var layout = this.layout = new CoSELayout();\n  var self = this;\n\n  self.stopped = false;\n\n  this.cy = this.options.cy;\n\n  this.cy.trigger({ 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package/dist/visualization.es106.js

@@ -1,59 +1,5 @@
-import { jsx as $, jsxs as P, Fragment as W } from "react/jsx-runtime";
-import { c as b } from "react/compiler-runtime";
-import { memo as q, useRef as z } from "react";
-import E from "./visualization.es107.js";
-import { getHeatmapColorScale as G, isOutsideRange as I, resolveCellAppearance as J } from "./visualization.es98.js";
-import { getBins as K } from "./visualization.es45.js";
-import { useStableCallback as L } from "./visualization.es20.js";
-import N from "./visualization.es227.js";
-import Q from "./visualization.es228.js";
-import U from "./visualization.es13.js";
-const re = q(function(B) {
-  const e = b(29), {
-    data: f,
-    xScale: u,
-    yScale: d,
-    colors: h,
-    minValue: j,
-    maxValue: C,
-    gap: g,
-    isRect: t,
-    binWidth: o,
-    binHeight: c,
-    animationType: H,
-    tooltipBody: n,
-    onClick: O,
-    highlightRange: R
-  } = B, x = j === void 0 ? 0 : j;
-  let s;
-  e[0] !== h || e[1] !== C || e[2] !== x ? (s = G(h, [x, C]), e[0] = h, e[1] = C, e[2] = x, e[3] = s) : s = e[3];
-  const S = s, k = Math.min(o, c) / 2, v = z(null), y = L(O), V = t ? N : Q;
-  let l;
-  e[4] !== c || e[5] !== o || e[6] !== t || e[7] !== k ? (l = t ? {
-    binWidth: o,
-    binHeight: c
-  } : {
-    radius: k
-  }, e[4] = c, e[5] = o, e[6] = t, e[7] = k, e[8] = l) : l = e[8];
-  let a;
-  e[9] !== H || e[10] !== o || e[11] !== y || e[12] !== R || e[13] !== t ? (a = (T) => T.map((w, A) => w.map((r) => {
-    const D = I(r.count, R), {
-      fill: F,
-      fillOpacity: M
-    } = J(r.count, r.color, D);
-    return /* @__PURE__ */ $(E, { bin: r, isRect: t, binWidth: o, fill: F, fillOpacity: M, colIndex: A, animationType: H, tooltipRef: v, onClick: y }, `heatmap-cell-${r.row}-${r.column}`);
-  })), e[9] = H, e[10] = o, e[11] = y, e[12] = R, e[13] = t, e[14] = a) : a = e[14];
-  let i;
-  e[15] !== V || e[16] !== S || e[17] !== f || e[18] !== g || e[19] !== l || e[20] !== a || e[21] !== u || e[22] !== d ? (i = /* @__PURE__ */ $(V, { data: f, xScale: u, yScale: d, colorScale: S, bins: K, gap: g, ...l, children: a }), e[15] = V, e[16] = S, e[17] = f, e[18] = g, e[19] = l, e[20] = a, e[21] = u, e[22] = d, e[23] = i) : i = e[23];
-  let m;
-  e[24] !== n ? (m = n && /* @__PURE__ */ $(U, { ref: v, children: n }), e[24] = n, e[25] = m) : m = e[25];
-  let p;
-  return e[26] !== i || e[27] !== m ? (p = /* @__PURE__ */ P(W, { children: [
-    i,
-    m
-  ] }), e[26] = i, e[27] = m, e[28] = p) : p = e[28], p;
-});
+var e = { exports: {} };
 export {
-  re as default
+  e as __module
 };
 //# sourceMappingURL=visualization.es106.js.map

package/dist/visualization.es106.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es106.js","sources":["../src/components/Heatmap/HeatmapCells.tsx"],"sourcesContent":["import { HeatmapRect, HeatmapCircle, RectCell, CircleCell } from \"@visx/heatmap\";\nimport { useMemo, useRef, memo, ReactElement } from \"react\";\nimport type { AnimationType } from \"../../utility\";\nimport type { ColumnDatum, RowDatum } from \"./types\";\nimport HeatmapCell from \"./HeatmapCell\";\nimport { PlotTooltip, type PlotTooltipHandle } from \"../../tooltip\";\nimport { useStableCallback } from \"../../hooks\";\nimport { getHeatmapColorScale, isOutsideRange, resolveCellAppearance } from \"./heatmapCellAppearance\";\nimport { getBins } from \"./heatmapLayout\";\n\nexport type AnyBin = RectCell<ColumnDatum, RowDatum> | CircleCell<ColumnDatum, RowDatum>;\n\nexport interface HeatmapCellsProps {\n  data: ColumnDatum[];\n  xScale: (d: number) => number;\n  yScale: (d: number) => number;\n  colors: [string, string, ...string[]];\n  /**\n   * Value mapped to the first color. Defaults to 0. Pass a negative value (e.g. paired with a\n   * positive maxValue) for a diverging scale centered away from zero.\n   */\n  minValue?: number;\n  maxValue: number;\n  gap: number;\n  isRect: boolean;\n  binWidth: number;\n  binHeight: number;\n  animationType?: AnimationType;\n  tooltipBody?: (bin: AnyBin) => ReactElement;\n  onClick?: (bin: AnyBin) => void;\n  /** See HeatmapProps.highlightRange. */\n  highlightRange?: [number, number] | null;\n}\n\nconst HeatmapCells = memo(function HeatmapCells({\n  data, xScale, yScale, colors, minValue = 0, maxValue, gap,\n  isRect, binWidth, binHeight, animationType,\n  tooltipBody, onClick, highlightRange,\n}: HeatmapCellsProps) {\n  const colorScale = useMemo(\n    () => getHeatmapColorScale(colors, [minValue, maxValue]),\n    [colors, minValue, maxValue]\n  );\n  const radius = Math.min(binWidth, binHeight) / 2;\n\n  // The tooltip is a sibling of the grid and owns its own state, so moving the pointer around\n  // never re-renders a cell. Cells reach it through this ref, which never changes identity.\n  const tooltipRef = useRef<PlotTooltipHandle<AnyBin>>(null);\n\n  // Consumers commonly pass an inline arrow for onClick. Cells are memoized on prop identity,\n  // so forwarding that directly would invalidate every cell on each render of the consumer.\n  const handleClick = useStableCallback(onClick);\n\n  const HeatmapComponent = isRect ? 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