@weng-lab/visualization 2.5.1 → 2.6.0-beta.1

package/dist/visualization.es115.js

@@ -1,127 +1,61 @@
-import { cellKey as D, resolveCellAppearance as H } from "./visualization.es114.js";
-const w = (t, o, n) => Math.min(Math.max(t, o), n);
-function x(t, o, n) {
-  const {
-    xScale: a,
-    cellYScale: r,
-    gap: i,
-    isRect: l,
-    binWidth: c,
-    binHeight: u
-  } = t;
-  if (l)
-    return {
-      isRect: !0,
-      x: a(o),
-      y: r(n) + i,
-      width: c - i,
-      height: u - i
-    };
-  const e = Math.min(c, u) / 2;
-  return {
-    isRect: !1,
-    cx: o * c + c / 2,
-    cy: r(n) + i + e,
-    r: e - i,
-    radius: e
-  };
-}
-function W(t, o, n, a, r, i) {
-  const {
-    data: l,
-    numRows: c,
-    binWidth: u,
-    binHeight: e,
-    yMax: s
-  } = t;
-  return {
-    colStart: w(Math.floor(o / u) - i, 0, Math.max(0, l.length - 1)),
-    colEnd: w(Math.ceil((o + a) / u) + i, 0, Math.max(0, l.length - 1)),
-    rowStart: w(Math.floor((s - (n + r)) / e) - i, 0, Math.max(0, c - 1)),
-    rowEnd: w(Math.floor((s - n) / e) + i, 0, Math.max(0, c - 1))
-  };
-}
-function C(t, o, n, a) {
-  const {
-    data: r,
-    colorScale: i,
-    selectedKeys: l,
-    deselectedColor: c
-  } = o;
-  let u = null, e = -1;
-  for (let s = n.colStart; s <= n.colEnd; s++) {
-    const y = r[s];
-    if (y)
-      for (let f = n.rowStart; f <= n.rowEnd; f++) {
-        const M = y.rows[f];
-        if (!M) continue;
-        const g = M.count, R = g == null ? void 0 : i(g), A = !!l && !l.has(D({
-          row: f,
-          column: s
-        })), {
-          fill: d,
-          fillOpacity: m
-        } = H(g, R, A, c);
-        if (m <= 0) continue;
-        const h = x(o, s, f);
-        m !== e && (t.globalAlpha = m, e = m), d !== u && (t.fillStyle = d, u = d);
-        const b = a !== null && a.row === f && a.column === s;
-        if (h.isRect) {
-          const p = Math.max(h.width, 0), S = Math.max(h.height, 0);
-          t.fillRect(h.x, h.y, p, S), b && (t.beginPath(), t.rect(h.x, h.y, p, S));
-        } else
-          t.beginPath(), t.arc(h.cx, h.cy, Math.max(h.r, 0), 0, Math.PI * 2), t.fill();
-        b && (t.globalAlpha = 1, e = 1, t.lineWidth = 2, t.strokeStyle = d, t.stroke());
-      }
-  }
-  t.globalAlpha = 1;
-}
-function P(t, o, n) {
-  const {
-    data: a,
-    numRows: r,
-    binWidth: i,
-    binHeight: l,
-    yMax: c
-  } = t;
-  if (o < 0 || n < 0) return null;
-  const u = Math.floor(o / i), e = Math.floor((c - n) / l);
-  return u < 0 || u >= a.length || e < 0 || e >= r || !a[u]?.rows[e] ? null : {
-    row: e,
-    column: u
-  };
-}
-function k(t, o) {
-  const n = t.data[o.column], a = n?.rows[o.row];
-  if (!n || !a) return null;
-  const r = a.count, i = r == null ? void 0 : t.colorScale(r), l = x(t, o.column, o.row), c = {
-    bin: a,
-    row: o.row,
-    column: o.column,
-    datum: n,
-    gap: t.gap,
-    count: r,
-    color: i,
-    opacity: r == null ? void 0 : 1
-  };
-  return l.isRect ? {
-    ...c,
-    x: l.x,
-    y: l.y,
-    width: l.width,
-    height: l.height
-  } : {
-    ...c,
-    cx: l.cx,
-    cy: l.cy,
-    r: l.r,
-    radius: l.radius
-  };
-}
+import { jsx as l, jsxs as _ } from "react/jsx-runtime";
+import { c as k } from "react/compiler-runtime";
+import { Add as y, Remove as C, SettingsBackupRestore as Z, Timeline as z } from "@mui/icons-material";
+import { Tooltip as b, IconButton as g } from "@mui/material";
+const T = (u) => {
+  const e = k(22), {
+    scaleZoom: t,
+    resetZoom: x,
+    toggleBranchLength: S
+  } = u;
+  let m;
+  e[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (m = {
+    position: "absolute",
+    margin: "4px",
+    display: "flex",
+    flexDirection: "column",
+    alignItems: "flex-start",
+    background: "rgba(255, 255, 255, 0.6)",
+    backdropFilter: "blur(2px)",
+    WebkitBackdropFilter: "blur(2px)",
+    border: "1px solid rgba(255, 255, 255, 0.3)",
+    boxShadow: "0 2px 8px rgba(0, 0, 0, 0.1)"
+  }, e[0] = m) : m = e[0];
+  let o;
+  e[1] !== t ? (o = () => t({
+    scaleX: 1.2,
+    scaleY: 1.2
+  }), e[1] = t, e[2] = o) : o = e[2];
+  let a;
+  e[3] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (a = /* @__PURE__ */ l(y, { fontSize: "small" }), e[3] = a) : a = e[3];
+  let i;
+  e[4] !== o ? (i = /* @__PURE__ */ l(b, { title: "Zoom In", placement: "right", children: /* @__PURE__ */ l(g, { onClick: o, children: a }) }), e[4] = o, e[5] = i) : i = e[5];
+  let r;
+  e[6] !== t ? (r = () => t({
+    scaleX: 0.8333333333333334,
+    scaleY: 0.8333333333333334
+  }), e[6] = t, e[7] = r) : r = e[7];
+  let f;
+  e[8] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (f = /* @__PURE__ */ l(C, { fontSize: "small" }), e[8] = f) : f = e[8];
+  let n;
+  e[9] !== r ? (n = /* @__PURE__ */ l(b, { title: "Zoom Out", placement: "right", children: /* @__PURE__ */ l(g, { onClick: r, children: f }) }), e[9] = r, e[10] = n) : n = e[10];
+  let h;
+  e[11] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (h = /* @__PURE__ */ l(Z, { fontSize: "small" }), e[11] = h) : h = e[11];
+  let c;
+  e[12] !== x ? (c = /* @__PURE__ */ l(b, { title: "Reset Zoom", placement: "right", children: /* @__PURE__ */ l(g, { onClick: x, children: h }) }), e[12] = x, e[13] = c) : c = e[13];
+  let p;
+  e[14] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (p = /* @__PURE__ */ l(z, { fontSize: "small" }), e[14] = p) : p = e[14];
+  let s;
+  e[15] !== S ? (s = /* @__PURE__ */ l(b, { title: "Toggle Evolutionary Distance", placement: "right", children: /* @__PURE__ */ l(g, { onClick: S, children: p }) }), e[15] = S, e[16] = s) : s = e[16];
+  let d;
+  return e[17] !== s || e[18] !== i || e[19] !== n || e[20] !== c ? (d = /* @__PURE__ */ _("div", { style: m, children: [
+    i,
+    n,
+    c,
+    s
+  ] }), e[17] = s, e[18] = i, e[19] = n, e[20] = c, e[21] = d) : d = e[21], d;
+};
 export {
-  k as buildBin,
-  C as drawHeatmapCells,
-  W as getVisibleRange,
-  P as hitTestCell
+  T as ControlPanel
 };
 //# sourceMappingURL=visualization.es115.js.map

package/dist/visualization.es115.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es115.js","sources":["../src/components/Heatmap/HeatmapCanvasCells.ts"],"sourcesContent":["import type { ColumnDatum, HeatmapCellId } from \"./types\";\nimport type { AnyBin } from \"./HeatmapCells\";\nimport { cellKey, resolveCellAppearance } from \"./heatmapCellAppearance\";\n\n/**\n * Everything the canvas draw loop and hit-testing need to place a cell exactly where the SVG\n * path (HeatmapCells.tsx, via @visx/heatmap's HeatmapRect/HeatmapCircle) would. xScale/cellYScale\n * are the same functions Heatmap.tsx already builds and passes to HeatmapCells.\n */\nexport interface CanvasCellParams {\n  data: ColumnDatum[];\n  numRows: number;\n  xScale: (column: number) => number;\n  cellYScale: (row: number) => number;\n  colorScale: (count: number) => string | undefined;\n  gap: number;\n  isRect: boolean;\n  binWidth: number;\n  binHeight: number;\n  yMax: number;\n  selectedKeys: Set<string> | null;\n  deselectedColor: string;\n}\n\nexport interface CanvasDrawRange {\n  colStart: number;\n  colEnd: number;\n  rowStart: number;\n  rowEnd: number;\n}\n\nconst clamp = (value: number, min: number, max: number) => Math.min(Math.max(value, min), max);\n\n// Mirrors @visx/heatmap's HeatmapRect/HeatmapCircle bin geometry exactly (see their source:\n// node_modules/@visx/heatmap/lib/heatmaps/{HeatmapRect,HeatmapCircle}.js) so canvas-drawn cells\n// land on the same pixels the SVG path (export, non-scrollable mode) would draw them at. The\n// circle center's x mirrors HeatmapCell.tsx's own recomputation (col*binWidth + binWidth/2)\n// rather than @visx/heatmap's raw cx, for the same reason that file does it: keeps circles\n// centered in their cell regardless of the configured radius.\ntype CellGeometry =\n  | { isRect: true; x: number; y: number; width: number; height: number }\n  | { isRect: false; cx: number; cy: number; r: number; radius: number };\n\nfunction getCellGeometry(params: CanvasCellParams, col: number, row: number): CellGeometry {\n  const { xScale, cellYScale, gap, isRect, binWidth, binHeight } = params;\n  if (isRect) {\n    return { isRect: true, x: xScale(col), y: cellYScale(row) + gap, width: binWidth - gap, height: binHeight - gap };\n  }\n  const radius = Math.min(binWidth, binHeight) / 2;\n  return { isRect: false, cx: col * binWidth + binWidth / 2, cy: cellYScale(row) + gap + radius, r: radius - gap, radius };\n}\n\n/**\n * Column/row index bounds (inclusive) that intersect the given scroll viewport, plus a small\n * overscan so a cell is already drawn just before it scrolls into view rather than popping in a\n * frame late. Row bounds are derived from cellYScale's own convention (row 0 at the bottom of\n * the grid, row numRows-1 at the top): a cell at row r occupies content-y band\n * [yMax-(r+1)*binHeight, yMax-r*binHeight), so the row under a given y is\n * floor((yMax-y)/binHeight).\n */\nexport function getVisibleRange(\n  params: CanvasCellParams,\n  scrollLeft: number,\n  scrollTop: number,\n  viewportWidth: number,\n  viewportHeight: number,\n  overscan: number\n): CanvasDrawRange {\n  const { data, numRows, binWidth, binHeight, yMax } = params;\n  return {\n    colStart: clamp(Math.floor(scrollLeft / binWidth) - overscan, 0, Math.max(0, data.length - 1)),\n    colEnd: clamp(Math.ceil((scrollLeft + viewportWidth) / binWidth) + overscan, 0, Math.max(0, data.length - 1)),\n    rowStart: clamp(Math.floor((yMax - (scrollTop + viewportHeight)) / binHeight) - overscan, 0, Math.max(0, numRows - 1)),\n    rowEnd: clamp(Math.floor((yMax - scrollTop) / binHeight) + overscan, 0, Math.max(0, numRows - 1)),\n  };\n}\n\n/** Paints the cells in `range` onto `ctx`, whose origin is already at content-space (0,0). */\nexport function drawHeatmapCells(\n  ctx: CanvasRenderingContext2D,\n  params: CanvasCellParams,\n  range: CanvasDrawRange,\n  hoveredCell: HeatmapCellId | null\n) {\n  const { data, colorScale, selectedKeys, deselectedColor } = params;\n  // fillStyle/globalAlpha assignment forces the browser to re-parse the CSS color string even\n  // when it's unchanged from the previous cell - skipping redundant writes matters at this scale\n  // (this loop runs per-cell, up to hundreds of thousands of times for the minimap's full-dataset\n  // draw). Rects also use fillRect directly (no beginPath/rect/fill trio) since it's a faster\n  // native path for solid fills; a path is only built for a cell when it's the hovered one, so\n  // its outline can still be stroked.\n  let lastFill: string | null = null;\n  let lastAlpha = -1;\n  for (let col = range.colStart; col <= range.colEnd; col++) {\n    const columnDatum = data[col];\n    if (!columnDatum) continue;\n    for (let row = range.rowStart; row <= range.rowEnd; row++) {\n      const rowDatum = columnDatum.rows[row];\n      if (!rowDatum) continue;\n      const count = rowDatum.count;\n      const color = count == null ? undefined : colorScale(count);\n      const isDeselected = !!selectedKeys && !selectedKeys.has(cellKey({ row, column: col }));\n      const { fill, fillOpacity } = resolveCellAppearance(count, color, isDeselected, deselectedColor);\n      if (fillOpacity <= 0) continue;\n\n      const geometry = getCellGeometry(params, col, row);\n      if (fillOpacity !== lastAlpha) {\n        ctx.globalAlpha = fillOpacity;\n        lastAlpha = fillOpacity;\n      }\n      if (fill !== lastFill) {\n        ctx.fillStyle = fill;\n        lastFill = fill;\n      }\n\n      const isHovered = hoveredCell !== null && hoveredCell.row === row && hoveredCell.column === col;\n      if (geometry.isRect) {\n        const width = Math.max(geometry.width, 0);\n        const height = Math.max(geometry.height, 0);\n        ctx.fillRect(geometry.x, geometry.y, width, height);\n        if (isHovered) {\n          ctx.beginPath();\n          ctx.rect(geometry.x, geometry.y, width, height);\n        }\n      } else {\n        ctx.beginPath();\n        ctx.arc(geometry.cx, geometry.cy, Math.max(geometry.r, 0), 0, Math.PI * 2);\n        ctx.fill();\n      }\n\n      if (isHovered) {\n        ctx.globalAlpha = 1;\n        lastAlpha = 1;\n        ctx.lineWidth = 2;\n        ctx.strokeStyle = fill;\n        ctx.stroke();\n      }\n    }\n  }\n  ctx.globalAlpha = 1;\n}\n\n/** Content-space (post-scroll-offset) coordinates -> the cell under them, or null if none. */\nexport function hitTestCell(params: CanvasCellParams, contentX: number, contentY: number): HeatmapCellId | null {\n  const { data, numRows, binWidth, binHeight, yMax } = params;\n  if (contentX < 0 || contentY < 0) return null;\n  const column = Math.floor(contentX / binWidth);\n  const row = Math.floor((yMax - contentY) / binHeight);\n  if (column < 0 || column >= data.length || row < 0 || row >= numRows) return null;\n  if (!data[column]?.rows[row]) return null;\n  return { row, column };\n}\n\n/** Builds the same bin shape @visx/heatmap's RectCell/CircleCell provide, for onClick/tooltipBody. */\nexport function buildBin(params: CanvasCellParams, cell: HeatmapCellId): AnyBin | null {\n  const columnDatum = params.data[cell.column];\n  const rowDatum = columnDatum?.rows[cell.row];\n  if (!columnDatum || !rowDatum) return null;\n\n  const count = rowDatum.count;\n  const color = count == null ? undefined : params.colorScale(count);\n  const geometry = getCellGeometry(params, cell.column, cell.row);\n  const shared = { bin: rowDatum, row: cell.row, column: cell.column, datum: columnDatum, gap: params.gap, count, color, opacity: count == null ? undefined : 1 };\n\n  return geometry.isRect\n    ? ({ ...shared, x: geometry.x, y: geometry.y, width: geometry.width, height: geometry.height } as AnyBin)\n    : ({ ...shared, cx: geometry.cx, cy: geometry.cy, r: geometry.r, radius: geometry.radius } as 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package/dist/visualization.es116.js

@@ -1,83 +1,35 @@
-import { jsxs as U, jsx as X } from "react/jsx-runtime";
-import { useRef as Y, useEffect as k, useCallback as l } from "react";
-import { drawHeatmapCells as q } from "./visualization.es115.js";
-const m = (c, o, e) => Math.min(Math.max(c, o), e), J = ({
-  canvasCellParams: c,
-  xMax: o,
-  yMax: e,
-  viewportWidth: a,
-  viewportHeight: s,
-  scrollLeft: b,
-  scrollTop: P,
-  width: i,
-  height: d,
-  onNavigate: f,
-  onCanvasClick: R,
-  onReady: g
-}) => {
-  const D = Y(null), n = o > 0 ? i / o : 0, r = e > 0 ? d / e : 0, S = Y(g);
-  S.current = g, k(() => {
-    const t = D.current;
-    if (!t || n <= 0 || r <= 0) return;
-    const u = requestAnimationFrame(() => {
-      const p = t.getContext("2d");
-      if (!p) return;
-      const I = window.devicePixelRatio || 1;
-      p.setTransform(I * n, 0, 0, I * r, 0, 0), p.clearRect(0, 0, o, e);
-      const M = {
-        colStart: 0,
-        colEnd: Math.max(0, c.data.length - 1),
-        rowStart: 0,
-        rowEnd: Math.max(0, c.numRows - 1)
-      };
-      q(p, c, M, null), S.current?.();
+import { jsx as u } from "react/jsx-runtime";
+import { c as p } from "react/compiler-runtime";
+import { memo as g } from "react";
+import M from "./visualization.es78.js";
+const D = g((a) => {
+  const o = p(11), {
+    dragStart: r,
+    dragMove: s,
+    dragEnd: e,
+    scale: c,
+    isDragging: l
+  } = a;
+  let t;
+  o[0] !== e || o[1] !== l ? (t = () => {
+    l && e();
+  }, o[0] = e, o[1] = l, o[2] = t) : t = o[2];
+  let n;
+  o[3] !== c ? (n = (m) => {
+    const f = M(m) || {
+      x: 0,
+      y: 0
+    };
+    c({
+      scaleX: 1.5,
+      scaleY: 1.5,
+      point: f
     });
-    return () => cancelAnimationFrame(u);
-  }, [c, o, e, n, r]);
-  const T = l((t, u) => {
-    f(m(t - a / 2, 0, Math.max(0, o - a)), m(u - s / 2, 0, Math.max(0, e - s)));
-  }, [f, a, s, o, e]), h = l((t) => {
-    if (R) {
-      R();
-      return;
-    }
-    if (n <= 0 || r <= 0) return;
-    const u = t.currentTarget.getBoundingClientRect();
-    T((t.clientX - u.left) / n, (t.clientY - u.top) / r);
-  }, [R, T, n, r]), j = l((t) => {
-    t.stopPropagation(), t.currentTarget.setPointerCapture(t.pointerId);
-  }, []), x = l((t) => {
-    n <= 0 || r <= 0 || !t.currentTarget.hasPointerCapture(t.pointerId) || f(m(b + t.movementX / n, 0, Math.max(0, o - a)), m(P + t.movementY / r, 0, Math.max(0, e - s)));
-  }, [b, P, n, r, o, e, a, s, f]), z = l((t) => {
-    t.currentTarget.releasePointerCapture(t.pointerId);
-  }, []), C = m(b * n, 0, i), E = m(P * r, 0, d), A = Math.max(0, Math.min(a * n, i - C)), F = Math.max(0, Math.min(s * r, d - E));
-  return /* @__PURE__ */ U("div", { style: {
-    position: "relative",
-    width: i,
-    height: d
-  }, children: [
-    /* @__PURE__ */ X("canvas", { ref: D, width: i * (window.devicePixelRatio || 1), height: d * (window.devicePixelRatio || 1), style: {
-      width: i,
-      height: d,
-      display: "block",
-      cursor: "pointer",
-      border: "1px solid #d5d5d5",
-      boxSizing: "border-box"
-    }, onPointerDown: h }),
-    /* @__PURE__ */ X("div", { onPointerDown: j, onPointerMove: x, onPointerUp: z, style: {
-      position: "absolute",
-      left: C,
-      top: E,
-      width: A,
-      height: F,
-      border: "2px solid #0d0f98",
-      backgroundColor: "rgba(13, 15, 152, 0.15)",
-      cursor: "grab",
-      boxSizing: "border-box"
-    } })
-  ] });
-};
+  }, o[3] = c, o[4] = n) : n = o[4];
+  let i;
+  return o[5] !== e || o[6] !== s || o[7] !== r || o[8] !== t || o[9] !== n ? (i = /* @__PURE__ */ u("rect", { width: "100%", height: "100%", fill: "transparent", onTouchStart: r, onTouchMove: s, onTouchEnd: e, onMouseDown: r, onMouseMove: s, onMouseUp: e, onMouseLeave: t, onDoubleClick: n }), o[5] = e, o[6] = s, o[7] = r, o[8] = t, o[9] = n, o[10] = i) : i = o[10], i;
+});
 export {
-  J as default
+  D as ZoomSurface
 };
 //# sourceMappingURL=visualization.es116.js.map

package/dist/visualization.es116.js.map

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+import { jsx as e } from "react/jsx-runtime";
+import { useBranchLengthTransition as m } from "./visualization.es7.js";
+import { memo as a } from "react";
+import { motion as s } from "./visualization.es29.js";
+const c = a(function({
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 export {
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+  c as TreeLink
 };
 //# sourceMappingURL=visualization.es117.js.map

package/dist/visualization.es117.js.map

@@ -1 +1 @@
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