@weng-lab/visualization 2.5.0 → 2.5.1-beta.0

package/dist/visualization.es81.js

@@ -1,61 +1,32 @@
-function s(i, t, n) {
-  i._context.bezierCurveTo(
-    (2 * i._x0 + i._x1) / 3,
-    (2 * i._y0 + i._y1) / 3,
-    (i._x0 + 2 * i._x1) / 3,
-    (i._y0 + 2 * i._y1) / 3,
-    (i._x0 + 4 * i._x1 + t) / 6,
-    (i._y0 + 4 * i._y1 + n) / 6
-  );
-}
-function _(i) {
-  this._context = i;
-}
-_.prototype = {
-  areaStart: function() {
-    this._line = 0;
-  },
-  areaEnd: function() {
-    this._line = NaN;
-  },
-  lineStart: function() {
-    this._x0 = this._x1 = this._y0 = this._y1 = NaN, this._point = 0;
-  },
-  lineEnd: function() {
-    switch (this._point) {
-      case 3:
-        s(this, this._x1, this._y1);
-      // falls through
-      case 2:
-        this._context.lineTo(this._x1, this._y1);
-        break;
-    }
-    (this._line || this._line !== 0 && this._point === 1) && this._context.closePath(), this._line = 1 - this._line;
-  },
-  point: function(i, t) {
-    switch (i = +i, t = +t, this._point) {
-      case 0:
-        this._point = 1, this._line ? this._context.lineTo(i, t) : this._context.moveTo(i, t);
-        break;
-      case 1:
-        this._point = 2;
-        break;
-      case 2:
-        this._point = 3, this._context.lineTo((5 * this._x0 + this._x1) / 6, (5 * this._y0 + this._y1) / 6);
-      // falls through
-      default:
-        s(this, i, t);
-        break;
-    }
-    this._x0 = this._x1, this._x1 = i, this._y0 = this._y1, this._y1 = t;
-  }
-};
-function e(i) {
-  return new _(i);
-}
+import { jsxs as a, jsx as e } from "react/jsx-runtime";
+import { memo as o } from "react";
+import { ControlPanel as c } from "./visualization.es128.js";
+import { ZoomSurface as d } from "./visualization.es129.js";
+import { TOTAL_INNER_DIAMETER as n } from "./visualization.es7.js";
+import m from "./visualization.es27.js";
+const x = o(function({
+  zoom: r,
+  totalWidth: i,
+  totalHeight: t,
+  children: g,
+  toggleBranchLength: s
+}) {
+  return /* @__PURE__ */ a("div", { style: {
+    position: "relative",
+    width: i,
+    height: t
+  }, children: [
+    /* @__PURE__ */ e(c, { scaleZoom: r.scale, resetZoom: r.reset, toggleBranchLength: s }),
+    /* @__PURE__ */ a("svg", { width: i, height: t, style: {
+      cursor: r.isDragging ? "grabbing" : "grab",
+      touchAction: "none"
+    }, viewBox: `0 0 ${n} ${n}`, preserveAspectRatio: "xMidYMid meet", ref: r.containerRef, children: [
+      /* @__PURE__ */ e(d, { dragStart: r.dragStart, dragEnd: r.dragEnd, dragMove: r.dragMove, scale: r.scale, isDragging: r.isDragging }),
+      /* @__PURE__ */ e(m, { transform: r.toString(), children: g })
+    ] })
+  ] });
+});
 export {
-  _ as Basis,
-  e as default,
-  s as point
+  x as ZoomFrame
 };
 //# sourceMappingURL=visualization.es81.js.map

package/dist/visualization.es81.js.map

@@ -1 +1 @@
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package/dist/visualization.es82.js

@@ -1,55 +1,68 @@
-import { jsxs as m, jsx as o } from "react/jsx-runtime";
-import Y from "./visualization.es131.js";
-import { truncateTextToWidth as j, getLabelPlacement as A } from "./visualization.es132.js";
-import D, { useCallback as R } from "react";
-import E from "./visualization.es24.js";
-import F from "./visualization.es29.js";
-import $ from "./visualization.es30.js";
-const Z = (t) => {
-  function i(e) {
-    return e.children && e.children.length > 0 ? e.children.reduce((d, X) => d + i(X), 0) : e.data.value ?? 0;
-  }
-  const c = t.node.children !== void 0 && t.node.children.length > 0, r = c ? t.node.data.displayValue ?? i(t.node) : t.node.data.value ?? 0, k = t.fontSize, n = t.node.data.style?.color || t.node.parent?.data.style?.color || "black", h = t.node.data.style?.labelColor || n, x = t.node.data.style?.strokeColor || n, u = t.node.data.style?.strokeWidth === 0 ? 0 : t.node.data.style?.strokeWidth || t.strokeWidth, v = t.isHovered ? u + 2 : u, l = t.node.x1 - t.node.x0, a = t.node.y1 - t.node.y0, b = t.node.data.label, C = j(b, l - 8, k, "sans-serif"), f = a > 55 && l > 50 && r > 0, g = a > 20, {
-    textX: T,
-    textY: S,
-    textAnchor: W,
-    valueAnchor: B,
-    baseline: L,
-    valueY: M,
-    valueX: w
-  } = A(t.node, t.labelPlacement, f, c), {
-    tooltipData: s,
-    tooltipLeft: N,
-    tooltipTop: z,
-    tooltipOpen: V,
-    showTooltip: y,
-    hideTooltip: H
-  } = E(), O = R((e) => {
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-    const d = t.tooltipBody(t.node.data);
-    y({
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-      tooltipTop: e.clientY + 10,
-      tooltipData: d
-    });
-  }, [t.tooltipBody, t.node.data, y]), P = () => {
-    t.onNodeClicked && t.onNodeClicked(t.node.data);
-  };
-  return /* @__PURE__ */ m(D.Fragment, { children: [
-    /* @__PURE__ */ m("g", { onMouseEnter: () => t.onHover(!0), onMouseLeave: () => {
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-    }, onMouseMove: O, onClick: P, style: {
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-      transition: "stroke-width 0.2s"
-    }, children: [
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-};
+import { jsx as b, jsxs as p, Fragment as W } from "react/jsx-runtime";
+import { c as S } from "react/compiler-runtime";
+import { TreeLink as g } from "./visualization.es130.js";
+import { memo as E } from "react";
+import { LeafLinkExtension as M } from "./visualization.es131.js";
+import { LeafNodeLabel as v } from "./visualization.es132.js";
+const F = E((x) => {
+  const e = S(39), {
+    node: o,
+    dimmed: m,
+    useBranchLengths: n,
+    leafFontFamily: d,
+    leafFontSize: c,
+    onNodeMouseMove: k,
+    onNodeMouseLeave: h,
+    onBranchClick: L
+  } = x;
+  let a;
+  e[0] !== o || e[1] !== k ? (a = (N) => k(N, o), e[0] = o, e[1] = k, e[2] = a) : a = e[2];
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+  e[6] !== o || e[7] !== L ? (i = () => L(o.leaves().map(P)), e[6] = o, e[7] = L, e[8] = i) : i = e[8];
+  const s = m ? 0.2 : 1;
+  let f;
+  e[9] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (f = {
+    transition: "opacity 0.2s ease-in"
+  }, e[9] = f) : f = e[9];
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+  let l;
+  e[16] !== d || e[17] !== c || e[18] !== o.baseLeafLinkExtension || e[19] !== o.baseNodeX || e[20] !== o.baseNodeY || e[21] !== o.children || e[22] !== o.color || e[23] !== o.label || e[24] !== o.labelStrokeWidth || e[25] !== o.lightenedLinkExtColor || e[26] !== o.linkStrokeWidth || e[27] !== o.scaledLeafLinkExtension || e[28] !== o.x || e[29] !== n ? (l = !o.children && /* @__PURE__ */ p(W, { children: [
+    /* @__PURE__ */ b(M, { useBranchLengths: n, color: o.lightenedLinkExtColor, baseLeafLinkExtension: o.baseLeafLinkExtension, scaledLeafLinkExtension: o.scaledLeafLinkExtension, strokeWidth: o.linkStrokeWidth }),
+    /* @__PURE__ */ b(v, { nodeX: o.x, strokeWidth: o.labelStrokeWidth, baseNodeX: o.baseNodeX, baseNodeY: o.baseNodeY, label: o.label, color: o.color, fontSize: c, fontFamily: d })
+  ] }), e[16] = d, e[17] = c, e[18] = o.baseLeafLinkExtension, e[19] = o.baseNodeX, e[20] = o.baseNodeY, e[21] = o.children, e[22] = o.color, e[23] = o.label, e[24] = o.labelStrokeWidth, e[25] = o.lightenedLinkExtColor, e[26] = o.linkStrokeWidth, e[27] = o.scaledLeafLinkExtension, e[28] = o.x, e[29] = n, e[30] = l) : l = e[30];
+  let u;
+  return e[31] !== o.data.id || e[32] !== a || e[33] !== t || e[34] !== i || e[35] !== s || e[36] !== r || e[37] !== l ? (u = /* @__PURE__ */ p("g", { onMouseMove: a, onMouseLeave: t, onClick: i, id: o.data.id, opacity: s, style: f, children: [
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+}), T = E(function(e) {
+  const o = S(11), {
+    node: m,
+    hovered: n,
+    useBranchLengths: d,
+    onNodeMouseMove: c,
+    onNodeMouseLeave: k,
+    onBranchClick: h,
+    leafFontSize: L,
+    leafFontFamily: a
+  } = e;
+  let t;
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+    if (!s.parent)
+      return;
+    const r = !!n.length && !n.some((l) => s.descendantIds?.has(l) || s.ancestorIds?.has(l));
+    return /* @__PURE__ */ b(F, { node: s, dimmed: r, useBranchLengths: d, leafFontSize: L, leafFontFamily: a, onBranchClick: h, onNodeMouseMove: c, onNodeMouseLeave: k }, f);
+  }), o[0] = n, o[1] = a, o[2] = L, o[3] = m, o[4] = h, o[5] = k, o[6] = c, o[7] = d, o[8] = t) : t = o[8];
+  let i;
+  return o[9] !== t ? (i = /* @__PURE__ */ b("g", { id: "tree-root", children: t }), o[9] = t, o[10] = i) : i = o[10], i;
+});
+function P(x) {
+  return x.data.id;
+}
 export {
-  Z as default
+  T as RenderTree
 };
 //# sourceMappingURL=visualization.es82.js.map

package/dist/visualization.es82.js.map

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+{"version":3,"file":"visualization.es82.js","sources":["../src/components/PhyloTree/RenderTree.tsx"],"sourcesContent":["import { PhyloTreeProps, TreeNode } from \"./types\";\nimport { TreeLink } from \"./TreeLink\";\nimport { memo } from \"react\";\nimport { LeafLinkExtension } from \"./LeafLinkExtension\";\nimport { LeafNodeLabel } from \"./LeafNodeLabel\";\n\ntype Shared = {\n  node: TreeNode;\n  useBranchLengths: boolean;\n  leafFontSize: PhyloTreeProps[\"leafFontSize\"];\n  leafFontFamily: PhyloTreeProps[\"leafFontFamily\"];\n  onNodeMouseMove: (event: React.MouseEvent, node: TreeNode) => void;\n  onNodeMouseLeave: (event: React.MouseEvent, node: TreeNode) => void;\n  onBranchClick: (leafIds: string[]) => void;\n};\n\nexport type RenderTreeProps = Shared & {\n  hovered: string[];\n};\n\nexport type RenderChildProps = Shared & {\n  dimmed: boolean;\n};\n\nconst ChildNode = memo(\n  ({ node, dimmed, useBranchLengths, leafFontFamily, leafFontSize, onNodeMouseMove, onNodeMouseLeave, 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strokeWidth={node.linkStrokeWidth}\n            />\n            <LeafNodeLabel\n              nodeX={node.x}\n              strokeWidth={node.labelStrokeWidth}\n              baseNodeX={node.baseNodeX}\n              baseNodeY={node.baseNodeY}\n              label={node.label}\n              color={node.color}\n              fontSize={leafFontSize}\n              fontFamily={leafFontFamily}\n            />\n          </>\n        )}\n      </g>\n    );\n  }\n);\n\nexport const RenderTree = memo(function RenderTree({\n  node,\n  hovered,\n  useBranchLengths,\n  onNodeMouseMove,\n  onNodeMouseLeave,\n  onBranchClick,\n  leafFontSize,\n  leafFontFamily,\n}: RenderTreeProps) {\n  return (\n    <g id={\"tree-root\"}>\n      {/* no root node rendered (since root does not need to display link to parent) */}\n      {node.descendants()?.map((child, i) => {\n        if (!child.parent) return;\n        //This is done to elimate a .ancestors() and .descendants() traversal on every rerender\n        const dimmed = !!hovered.length && !(hovered.some(id => child.descendantIds?.has(id) || child.ancestorIds?.has(id)));\n\n        return (\n          <ChildNode\n            key={i}\n            node={child}\n            dimmed={dimmed}\n            useBranchLengths={useBranchLengths}\n            leafFontSize={leafFontSize}\n            leafFontFamily={leafFontFamily}\n            onBranchClick={onBranchClick}\n            onNodeMouseMove={onNodeMouseMove}\n            onNodeMouseLeave={onNodeMouseLeave}\n          />\n        );\n      })}\n    </g>\n  );\n}, 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package/dist/visualization.es83.js

@@ -1,57 +1,64 @@
-import s from "./visualization.es516.js";
-import u from "./visualization.es517.js";
-import m from "./visualization.es518.js";
-import l from "./visualization.es519.js";
-import _ from "./visualization.es520.js";
-import v from "./visualization.es521.js";
-import y from "./visualization.es522.js";
-import g from "./visualization.es523.js";
-import w from "./visualization.es524.js";
-import B from "./visualization.es525.js";
-import A from "./visualization.es526.js";
-function d(e, t) {
-  var a = new n(e), f = +e.value && (a.value = e.value), o, c = [a], i, h, r, p;
-  for (t == null && (t = x); o = c.pop(); )
-    if (f && (o.value = +o.data.value), (h = t(o.data)) && (p = h.length))
-      for (o.children = new Array(p), r = p - 1; r >= 0; --r)
-        c.push(i = o.children[r] = new n(h[r])), i.parent = o, i.depth = o.depth + 1;
-  return a.eachBefore(D);
+import m from "./visualization.es233.js";
+import c from "./visualization.es234.js";
+import s from "./visualization.es235.js";
+import u from "./visualization.es236.js";
+import l from "./visualization.es237.js";
+import _ from "./visualization.es238.js";
+import y from "./visualization.es239.js";
+import v from "./visualization.es240.js";
+import g from "./visualization.es241.js";
+import A from "./visualization.es242.js";
+import w from "./visualization.es243.js";
+import B from "./visualization.es244.js";
+import b from "./visualization.es245.js";
+function d(e, o) {
+  e instanceof Map ? (e = [void 0, e], o === void 0 && (o = j)) : o === void 0 && (o = C);
+  for (var f = new i(e), r, h = [f], a, t, n, p; r = h.pop(); )
+    if ((t = o(r.data)) && (p = (t = Array.from(t)).length))
+      for (r.children = t, n = p - 1; n >= 0; --n)
+        h.push(a = t[n] = new i(t[n])), a.parent = r, a.depth = r.depth + 1;
+  return f.eachBefore(D);
 }
 function k() {
-  return d(this).eachBefore(C);
+  return d(this).eachBefore(x);
 }
-function x(e) {
+function C(e) {
   return e.children;
 }
-function C(e) {
-  e.data = e.data.data;
+function j(e) {
+  return Array.isArray(e) ? e[1] : null;
+}
+function x(e) {
+  e.data.value !== void 0 && (e.value = e.data.value), e.data = e.data.data;
 }
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package/dist/visualization.es86.js

@@ -1,8 +1,7 @@
-function h(l, u, a, d, o) {
-  for (var i = l.children, e, n = -1, v = i.length, c = l.value && (o - a) / l.value; ++n < v; )
-    e = i[n], e.x0 = u, e.x1 = d, e.y0 = a, e.y1 = a += e.value * c;
+function n(a, t) {
+  return [(t = +t) * Math.cos(a -= Math.PI / 2), t * Math.sin(a)];
 }
 export {
-  h as default
+  n as default
 };
 //# sourceMappingURL=visualization.es86.js.map