@weng-lab/visualization 2.4.1 → 2.4.3

package/dist/visualization.es71.js

@@ -1,11 +1,106 @@
-import e from "./visualization.es140.js";
-import a from "./visualization.es144.js";
-const n = e("domain", "range", "reverse", "unknown");
-function i(r) {
-  return n(a(), r);
-}
+import { jsxs as b, jsx as f } from "react/jsx-runtime";
+import { useRef as S, useEffect as Y } from "react";
+import { CROSSHAIR_STROKE as T, CROSSHAIR_DASH as W, CROSSHAIR_STROKE_WIDTH as P } from "./visualization.es120.js";
+import { useStableCallback as w } from "./visualization.es19.js";
+const o = 0.25, H = P / o, _ = W.map((c) => c / o).join(","), N = ({
+  miniMap: c,
+  width: C,
+  height: D,
+  pointData: E,
+  xScale: m,
+  yScale: R,
+  zoom: r,
+  crosshair: h
+}) => {
+  const a = h ? m(h.x) : null, u = h ? R(h.y) : null, l = C - 100, i = D - 100, s = S(null), d = S(null), g = S(null), M = w(() => {
+    const n = d.current;
+    d.current = null, n && r.setTransformMatrix({
+      ...r.transformMatrix,
+      translateX: r.transformMatrix.translateX - n.dx / o * r.transformMatrix.scaleX,
+      translateY: r.transformMatrix.translateY - n.dy / o * r.transformMatrix.scaleY
+    });
+  }), p = (n, t) => {
+    const e = d.current ?? {
+      dx: 0,
+      dy: 0
+    };
+    e.dx += n, e.dy += t, d.current = e;
+  }, A = () => {
+    s.current === null && (s.current = requestAnimationFrame(() => {
+      s.current = null, M();
+    }));
+  }, x = () => {
+    s.current !== null && (cancelAnimationFrame(s.current), s.current = null), M(), g.current = null, r.dragEnd();
+  };
+  return Y(() => () => {
+    s.current !== null && cancelAnimationFrame(s.current);
+  }, []), /* @__PURE__ */ b("div", { style: {
+    position: "absolute",
+    bottom: c.position ? c.position.bottom : 10,
+    right: c.position ? c.position.right : 10
+  }, children: [
+    /* @__PURE__ */ f("canvas", { width: l * o, height: i * o, ref: (n) => {
+      if (n) {
+        const t = n.getContext("2d"), e = o, I = l * e, k = i * e;
+        t && (t.clearRect(0, 0, n.width, n.height), t.fillStyle = "white", t.fillRect(0, 0, I, k), t.strokeStyle = "grey", t.lineWidth = 4, t.strokeRect(0, 0, I, k), E.forEach((y) => {
+          const O = m(y.x) * e, X = R(y.y) * e;
+          t.beginPath(), t.arc(O, X, 3 * e, 0, Math.PI * 2), t.fillStyle = y.color ?? "black", t.fill();
+        }));
+      }
+    }, style: {
+      display: "block"
+    } }),
+    /* @__PURE__ */ f("svg", { width: l * o, height: i * o, style: {
+      position: "absolute",
+      top: 0,
+      left: 0
+    }, children: /* @__PURE__ */ b("g", { transform: `scale(${o})`, children: [
+      /* @__PURE__ */ f(
+        "rect",
+        {
+          width: l,
+          height: i,
+          fill: "#0d0f98",
+          fillOpacity: 0.2,
+          stroke: "#0d0f98",
+          strokeWidth: 4,
+          rx: 8,
+          transform: r.toStringInvert(),
+          style: {
+            cursor: r.isDragging ? "grabbing" : "grab",
+            touchAction: "none"
+          },
+          onMouseDown: r.dragStart,
+          onMouseUp: x,
+          onMouseMove: (n) => {
+            r.isDragging && (p(n.movementX, n.movementY), A());
+          },
+          onMouseLeave: x,
+          onTouchStart: (n) => {
+            const t = n.touches[0];
+            t && (g.current = {
+              x: t.clientX,
+              y: t.clientY
+            }), r.dragStart(n);
+          },
+          onTouchEnd: x,
+          onTouchCancel: x,
+          onTouchMove: (n) => {
+            if (!r.isDragging || n.touches.length !== 1) return;
+            const t = n.touches[0], e = g.current;
+            g.current = {
+              x: t.clientX,
+              y: t.clientY
+            }, e && (p(t.clientX - e.x, t.clientY - e.y), A());
+          }
+        }
+      ),
+      u !== null && u >= 0 && u <= i && /* @__PURE__ */ f("line", { x1: 0, x2: l, y1: u, y2: u, stroke: T, strokeWidth: H, strokeDasharray: _, pointerEvents: "none" }),
+      a !== null && a >= 0 && a <= l && /* @__PURE__ */ f("line", { x1: a, x2: a, y1: 0, y2: i, stroke: T, strokeWidth: H, strokeDasharray: _, pointerEvents: "none" })
+    ] }) })
+  ] });
+};
 export {
-  i as default,
-  n as updateOrdinalScale
+  N as default
 };
 //# sourceMappingURL=visualization.es71.js.map

package/dist/visualization.es71.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es71.js","sources":["../../../node_modules/.pnpm/@visx+scale@4.0.0/node_modules/@visx/scale/esm/scales/ordinal.js"],"sourcesContent":["import { scaleOrdinal } from '@visx/vendor/d3-scale';\nimport scaleOperator from \"../operators/scaleOperator.js\";\nexport const updateOrdinalScale = scaleOperator('domain', 'range', 'reverse', 'unknown');\nexport default function createOrdinalScale(config) {\n  return updateOrdinalScale(scaleOrdinal(), config);\n}"],"names":["updateOrdinalScale","scaleOperator","createOrdinalScale","config","scaleOrdinal"],"mappings":";;AAEY,MAACA,IAAqBC,EAAc,UAAU,SAAS,WAAW,SAAS;AACxE,SAASC,EAAmBC,GAAQ;AACjD,SAAOH,EAAmBI,EAAY,GAAID,CAAM;AAClD;","x_google_ignoreList":[0]}
+{"version":3,"file":"visualization.es71.js","sources":["../src/components/ScatterPlot/minimap.tsx"],"sourcesContent":["import { useEffect, useRef } from \"react\";\nimport { MapProps } from \"./types\";\nimport { CROSSHAIR_DASH, CROSSHAIR_STROKE, CROSSHAIR_STROKE_WIDTH } from \"./Crosshair\";\nimport { useStableCallback } from \"../../hooks\";\n\nconst MINIMAP_SCALE_FACTOR = 0.25;\n// The crosshair is drawn inside the scaled group, so its stroke and dashes shrink with it.\n// Scale them back up so it renders identically to the crosshair on the plot itself.\nconst MINIMAP_CROSSHAIR_STROKE_WIDTH = CROSSHAIR_STROKE_WIDTH / MINIMAP_SCALE_FACTOR;\nconst MINIMAP_CROSSHAIR_DASH = CROSSHAIR_DASH.map((dash) => dash / MINIMAP_SCALE_FACTOR).join(\",\");\n\nconst MiniMap = <T,>({\n    miniMap,\n    width,\n    height,\n    pointData,\n    xScale,\n    yScale,\n    zoom,\n    crosshair\n}: MapProps<T>) => {\n    // The minimap frame is the whole plot area untransformed, so a data coordinate maps onto it\n    // through the base scales - no need to undo the current zoom.\n    const crosshairX = crosshair ? xScale(crosshair.x) : null;\n    const crosshairY = crosshair ? yScale(crosshair.y) : null;\n    const frameWidth = width - 100;\n    const frameHeight = height - 100;\n\n    /**\n     * Dragging the window is coalesced to one zoom update per animation frame.\n     *\n     * This handler sets the transform matrix directly rather than going through zoom.dragMove,\n     * so it needs its own coalescing: without it a mouse reporting faster than the browser\n     * paints updates a zoom shared by every synced plot on each move, and React eventually\n     * warns that the update depth was exceeded.\n     *\n     * Movement is accumulated rather than replaced: these are deltas, so dropping the moves in\n     * between would lose the distance they covered. A pointer moving faster than the frame rate\n     * still pans exactly as far as it travelled.\n     */\n    const frameRef = useRef<number | null>(null);\n    const pendingRef = useRef<{ dx: number; dy: number } | null>(null);\n    // Touch events carry absolute positions, so a drag delta is the step from the previous one.\n    const lastTouchRef = useRef<{ x: number; y: number } | null>(null);\n\n    const flushPan = useStableCallback(() => {\n        const pending = pendingRef.current;\n        pendingRef.current = null;\n        if (!pending) return;\n\n        zoom.setTransformMatrix({\n            ...zoom.transformMatrix,\n            translateX: zoom.transformMatrix.translateX - pending.dx / MINIMAP_SCALE_FACTOR * zoom.transformMatrix.scaleX,\n            translateY: zoom.transformMatrix.translateY - pending.dy / MINIMAP_SCALE_FACTOR * zoom.transformMatrix.scaleY,\n        });\n    });\n\n    const accumulate = (dx: number, dy: number) => {\n        const pending = pendingRef.current ?? { dx: 0, dy: 0 };\n        pending.dx += dx;\n        pending.dy += dy;\n        pendingRef.current = pending;\n    };\n\n    const scheduleFrame = () => {\n        if (frameRef.current !== null) return;\n        frameRef.current = requestAnimationFrame(() => {\n            frameRef.current = null;\n            flushPan();\n        });\n    };\n\n    // Apply whatever is still queued before the gesture closes, so the window lands where the\n    // pointer left it rather than a frame behind.\n    const endPan = () => {\n        if (frameRef.current !== null) {\n            cancelAnimationFrame(frameRef.current);\n            frameRef.current = null;\n        }\n        flushPan();\n        lastTouchRef.current = null;\n        zoom.dragEnd();\n    };\n\n    useEffect(() => () => {\n        if (frameRef.current !== null) cancelAnimationFrame(frameRef.current);\n    }, []);\n\n    return (\n        <div\n            style={{\n                position: 'absolute',\n                bottom: miniMap.position ? miniMap.position.bottom : 10,\n                right: miniMap.position ? miniMap.position.right : 10,\n            }}\n        >\n            {/* Canvas for rendering points on minimap */}\n            <canvas\n                width={frameWidth * MINIMAP_SCALE_FACTOR}\n                height={frameHeight * MINIMAP_SCALE_FACTOR}\n                ref={(canvas) => {\n                    if (canvas) {\n                        const context = canvas.getContext('2d');\n                        const scaleFactor = MINIMAP_SCALE_FACTOR;\n                        const scaledWidth = frameWidth * scaleFactor;\n                        const scaledHeight = frameHeight * scaleFactor;\n                        if (context) {\n                            // Clear canvas\n                            context.clearRect(0, 0, canvas.width, canvas.height);\n\n                            // Draw background and outline\n                            context.fillStyle = 'white';\n                            context.fillRect(0, 0, scaledWidth, scaledHeight);\n                            context.strokeStyle = 'grey';\n                            context.lineWidth = 4;\n                            context.strokeRect(0, 0, scaledWidth, scaledHeight);\n\n                            // Draw points\n                            pointData.forEach(point => {\n                                const transformedX = xScale(point.x) * scaleFactor;\n                                const transformedY = yScale(point.y) * scaleFactor;\n                                context.beginPath();\n                                context.arc(transformedX, transformedY, 3 * scaleFactor, 0, Math.PI * 2);\n                                context.fillStyle = point.color ?? \"black\";\n                                context.fill();\n                            });\n                        }\n                    }\n                }}\n                style={{ display: 'block' }}\n            />\n\n            {/* SVG for rendering the zoom window */}\n            <svg\n                width={frameWidth * MINIMAP_SCALE_FACTOR}\n                height={frameHeight * MINIMAP_SCALE_FACTOR}\n                style={{ position: 'absolute', top: 0, left: 0 }}\n            >\n                <g transform={`scale(${MINIMAP_SCALE_FACTOR})`}>\n                    <rect\n                        width={frameWidth}\n                        height={frameHeight}\n                        fill=\"#0d0f98\"\n                        fillOpacity={0.2}\n                        stroke=\"#0d0f98\"\n                        strokeWidth={4}\n                        rx={8}\n                        transform={zoom.toStringInvert()}\n                        //drag functionality for window, must invert zoom and take the scale into account\n                        style={{ cursor: zoom.isDragging ? \"grabbing\" : \"grab\", touchAction: \"none\" }}\n                        onMouseDown={zoom.dragStart}\n                        onMouseUp={endPan}\n                        onMouseMove={(event) => {\n                            if (zoom.isDragging) {\n                                accumulate(event.movementX, event.movementY);\n                                scheduleFrame();\n                            }\n                        }}\n                        onMouseLeave={endPan}\n                        onTouchStart={(event) => {\n                            const touch = event.touches[0];\n                            // Seed the previous position so the first move measures a step from\n                            // where the finger landed, not from the origin.\n                            if (touch) lastTouchRef.current = { x: touch.clientX, y: touch.clientY };\n                            zoom.dragStart(event);\n                        }}\n                        onTouchEnd={endPan}\n                        onTouchCancel={endPan}\n                        onTouchMove={(event) => {\n                            // Only a single finger pans; a second one is a pinch, which belongs\n                            // to the plot's own zoom rather than to this window.\n                            if (!zoom.isDragging || event.touches.length !== 1) return;\n                            const touch = event.touches[0];\n                            const last = lastTouchRef.current;\n                            lastTouchRef.current = { x: touch.clientX, y: touch.clientY };\n                            if (!last) return;\n                            accumulate(touch.clientX - last.x, touch.clientY - last.y);\n                            scheduleFrame();\n                        }}\n                    />\n                    {crosshairY !== null && crosshairY >= 0 && crosshairY <= frameHeight && (\n                        <line\n                            x1={0}\n                            x2={frameWidth}\n                            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package/dist/visualization.es72.js

@@ -1,32 +1,30 @@
-import { jsxs as a, jsx as e } from "react/jsx-runtime";
-import { memo as o } from "react";
-import { ControlPanel as c } from "./visualization.es119.js";
-import { ZoomSurface as d } from "./visualization.es120.js";
-import { TOTAL_INNER_DIAMETER as n } from "./visualization.es7.js";
-import m from "./visualization.es32.js";
-const x = o(function({
-  zoom: r,
-  totalWidth: i,
-  totalHeight: t,
-  children: g,
-  toggleBranchLength: s
-}) {
-  return /* @__PURE__ */ a("div", { style: {
-    position: "relative",
-    width: i,
-    height: t
-  }, children: [
-    /* @__PURE__ */ e(c, { scaleZoom: r.scale, resetZoom: r.reset, toggleBranchLength: s }),
-    /* @__PURE__ */ a("svg", { width: i, height: t, style: {
-      cursor: r.isDragging ? "grabbing" : "grab",
-      touchAction: "none"
-    }, viewBox: `0 0 ${n} ${n}`, preserveAspectRatio: "xMidYMid meet", ref: r.containerRef, children: [
-      /* @__PURE__ */ e(d, { dragStart: r.dragStart, dragEnd: r.dragEnd, dragMove: r.dragMove, scale: r.scale, isDragging: r.isDragging }),
-      /* @__PURE__ */ e(m, { transform: r.toString(), children: g })
-    ] })
-  ] });
-});
+import { jsx as i } from "react/jsx-runtime";
+import { c as n } from "react/compiler-runtime";
+import m from "./visualization.es62.js";
+const f = {
+  scaleX: 1,
+  scaleY: 1,
+  translateX: 0,
+  translateY: 0,
+  skewX: 0,
+  skewY: 0
+}, M = {
+  scaleXMin: 1 / 2,
+  scaleXMax: 10,
+  scaleYMin: 1 / 2,
+  scaleYMax: 10
+}, h = m, d = (r) => {
+  const t = n(6), {
+    width: s,
+    height: a,
+    children: l
+  } = r;
+  let e;
+  t[0] !== l ? (e = (c) => l(c), t[0] = l, t[1] = e) : e = t[1];
+  let o;
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 export {
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+  d as default
 };
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package/dist/visualization.es72.js.map

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package/dist/visualization.es73.js

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-import { LeafNodeLabel as v } from "./visualization.es123.js";
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+import { jsx as a, jsxs as c } from "react/jsx-runtime";
+import { c as n } from "react/compiler-runtime";
+const m = (l) => {
+  const t = n(5), {
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+  return t[3] !== r ? (o = /* @__PURE__ */ a("div", { children: r }), t[3] = r, t[4] = o) : o = t[4], o;
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+  return /* @__PURE__ */ c("div", { children: [
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 }
 export {
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 };
 //# sourceMappingURL=visualization.es73.js.map

package/dist/visualization.es73.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es73.js","sources":["../src/components/PhyloTree/RenderTree.tsx"],"sourcesContent":["import { PhyloTreeProps, TreeNode } from \"./types\";\nimport { TreeLink } from \"./TreeLink\";\nimport { memo } from \"react\";\nimport { LeafLinkExtension } from \"./LeafLinkExtension\";\nimport { LeafNodeLabel } from \"./LeafNodeLabel\";\n\ntype Shared = {\n  node: TreeNode;\n  useBranchLengths: boolean;\n  leafFontSize: PhyloTreeProps[\"leafFontSize\"];\n  leafFontFamily: PhyloTreeProps[\"leafFontFamily\"];\n  onNodeMouseMove: (event: React.MouseEvent, node: TreeNode) => void;\n  onNodeMouseLeave: (event: React.MouseEvent, node: TreeNode) => void;\n  onBranchClick: (leafIds: string[]) => void;\n};\n\nexport type RenderTreeProps = Shared & {\n  hovered: string[];\n};\n\nexport type RenderChildProps = Shared & {\n  dimmed: boolean;\n};\n\nconst ChildNode = memo(\n  ({ node, dimmed, useBranchLengths, leafFontFamily, leafFontSize, onNodeMouseMove, onNodeMouseLeave, 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