@weng-lab/visualization 2.4.1 → 2.4.2

package/dist/visualization.es121.js

@@ -1,21 +1,28 @@
-import { jsx as e } from "react/jsx-runtime";
-import { useBranchLengthTransition as m } from "./visualization.es7.js";
-import { memo as a } from "react";
-import { motion as s } from "./visualization.es27.js";
-const c = a(function({
-  scaledLinkPath: o,
-  baseLinkPath: n,
-  color: r,
-  strokeWidth: i,
-  useBranchLengths: t
-}) {
-  return /* @__PURE__ */ e(s.path, { stroke: r, strokeWidth: i, fill: "none", initial: !1, strokeLinecap: "round", strokeLinejoin: "round", animate: {
-    d: t ? o : n
-  }, transition: {
-    d: m
-  } });
+import { popperGenerator as r } from "./visualization.es512.js";
+import o from "./visualization.es521.js";
+import e from "./visualization.es522.js";
+import p from "./visualization.es523.js";
+import t from "./visualization.es122.js";
+import m from "./visualization.es524.js";
+import f from "./visualization.es525.js";
+import i from "./visualization.es526.js";
+import s from "./visualization.es527.js";
+import a from "./visualization.es528.js";
+var l = [o, e, p, t, m, f, i, s, a], h = /* @__PURE__ */ r({
+  defaultModifiers: l
 });
 export {
-  c as TreeLink
+  t as applyStyles,
+  s as arrow,
+  p as computeStyles,
+  h as createPopper,
+  l as defaultModifiers,
+  o as eventListeners,
+  f as flip,
+  a as hide,
+  m as offset,
+  r as popperGenerator,
+  e as popperOffsets,
+  i as preventOverflow
 };
 //# sourceMappingURL=visualization.es121.js.map

package/dist/visualization.es121.js.map

@@ -1 +1 @@
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+{"version":3,"file":"visualization.es121.js","sources":["../../../node_modules/.pnpm/@popperjs+core@2.11.8/node_modules/@popperjs/core/lib/popper.js"],"sourcesContent":["import { popperGenerator, detectOverflow } from \"./createPopper.js\";\nimport eventListeners from \"./modifiers/eventListeners.js\";\nimport popperOffsets from \"./modifiers/popperOffsets.js\";\nimport computeStyles from \"./modifiers/computeStyles.js\";\nimport applyStyles from \"./modifiers/applyStyles.js\";\nimport offset from \"./modifiers/offset.js\";\nimport flip from \"./modifiers/flip.js\";\nimport preventOverflow from \"./modifiers/preventOverflow.js\";\nimport arrow from \"./modifiers/arrow.js\";\nimport hide from \"./modifiers/hide.js\";\nvar defaultModifiers = [eventListeners, popperOffsets, computeStyles, applyStyles, offset, flip, preventOverflow, arrow, hide];\nvar createPopper = /*#__PURE__*/popperGenerator({\n  defaultModifiers: defaultModifiers\n}); // eslint-disable-next-line import/no-unused-modules\n\nexport { createPopper, popperGenerator, defaultModifiers, detectOverflow }; // eslint-disable-next-line import/no-unused-modules\n\nexport { createPopper as createPopperLite } from \"./popper-lite.js\"; // eslint-disable-next-line import/no-unused-modules\n\nexport * from \"./modifiers/index.js\";"],"names":["defaultModifiers","eventListeners","popperOffsets","computeStyles","applyStyles","offset","flip","preventOverflow","arrow","hide","createPopper","popperGenerator"],"mappings":";;;;;;;;;;AAUG,IAACA,IAAmB,CAACC,GAAgBC,GAAeC,GAAeC,GAAaC,GAAQC,GAAMC,GAAiBC,GAAOC,CAAI,GACzHC,IAA4B,gBAAAC,EAAgB;AAAA,EAC9C,kBAAkBX;AACpB,CAAC;","x_google_ignoreList":[0]}

package/dist/visualization.es122.js

@@ -1,17 +1,48 @@
-import { jsx as e } from "react/jsx-runtime";
-import { useBranchLengthTransition as m } from "./visualization.es7.js";
-import { memo as s } from "react";
-import { motion as a } from "./visualization.es27.js";
-const k = s(function({
-  useBranchLengths: n,
-  color: i,
-  baseLeafLinkExtension: o,
-  scaledLeafLinkExtension: t,
-  strokeWidth: r
-}) {
-  return /* @__PURE__ */ e(a.line, { strokeWidth: r, initial: !1, animate: n ? t : o, stroke: i, transition: m });
-});
+import c from "./visualization.es554.js";
+import { isHTMLElement as f } from "./visualization.es520.js";
+function p(l) {
+  var e = l.state;
+  Object.keys(e.elements).forEach(function(t) {
+    var r = e.styles[t] || {}, s = e.attributes[t] || {}, a = e.elements[t];
+    !f(a) || !c(a) || (Object.assign(a.style, r), Object.keys(s).forEach(function(o) {
+      var i = s[o];
+      i === !1 ? a.removeAttribute(o) : a.setAttribute(o, i === !0 ? "" : i);
+    }));
+  });
+}
+function y(l) {
+  var e = l.state, t = {
+    popper: {
+      position: e.options.strategy,
+      left: "0",
+      top: "0",
+      margin: "0"
+    },
+    arrow: {
+      position: "absolute"
+    },
+    reference: {}
+  };
+  return Object.assign(e.elements.popper.style, t.popper), e.styles = t, e.elements.arrow && Object.assign(e.elements.arrow.style, t.arrow), function() {
+    Object.keys(e.elements).forEach(function(r) {
+      var s = e.elements[r], a = e.attributes[r] || {}, o = Object.keys(e.styles.hasOwnProperty(r) ? e.styles[r] : t[r]), i = o.reduce(function(n, u) {
+        return n[u] = "", n;
+      }, {});
+      !f(s) || !c(s) || (Object.assign(s.style, i), Object.keys(a).forEach(function(n) {
+        s.removeAttribute(n);
+      }));
+    });
+  };
+}
+const m = {
+  name: "applyStyles",
+  enabled: !0,
+  phase: "write",
+  fn: p,
+  effect: y,
+  requires: ["computeStyles"]
+};
 export {
-  k as LeafLinkExtension
+  m as default
 };
 //# sourceMappingURL=visualization.es122.js.map

package/dist/visualization.es122.js.map

@@ -1 +1 @@
-{"version":3,"file":"visualization.es122.js","sources":["../src/components/PhyloTree/LeafLinkExtension.tsx"],"sourcesContent":["import { motion } from \"framer-motion\";\nimport { useBranchLengthTransition } from \"./PhyloTree\";\nimport { memo } from \"react\";\nimport { TreeNode } from \"./types\";\n\n\nexport type LeafLinkExtensionProps = {\n  baseLeafLinkExtension: TreeNode[\"baseLeafLinkExtension\"]\n  scaledLeafLinkExtension: TreeNode[\"scaledLeafLinkExtension\"]\n  color: TreeNode[\"color\"];\n  strokeWidth: TreeNode[\"linkStrokeWidth\"]\n  useBranchLengths: boolean\n};\n\nexport const LeafLinkExtension = memo(function LinkExtension({\n  useBranchLengths,\n  color,\n  baseLeafLinkExtension,\n  scaledLeafLinkExtension,\n  strokeWidth\n}: LeafLinkExtensionProps) {\n\n  return (\n    <motion.line\n      strokeWidth={strokeWidth}\n      initial={false}\n      animate={useBranchLengths ? scaledLeafLinkExtension : baseLeafLinkExtension}\n      stroke={color}\n      transition={useBranchLengthTransition}\n    />\n  );\n});\n"],"names":["LeafLinkExtension","memo","useBranchLengths","color","baseLeafLinkExtension","scaledLeafLinkExtension","strokeWidth","jsx","motion","useBranchLengthTransition"],"mappings":";;;;AAcO,MAAMA,IAAoBC,EAAK,SAAuB;AAAA,EAC3DC,kBAAAA;AAAAA,EACAC,OAAAA;AAAAA,EACAC,uBAAAA;AAAAA,EACAC,yBAAAA;AAAAA,EACAC,aAAAA;AACsB,GAAG;AAEzB,SACE,gBAAAC,EAACC,EAAO,MAAP,EACC,aAAAF,GACA,SAAS,IACT,SAASJ,IAAmBG,IAA0BD,GACtD,QAAQD,GACR,YAAYM,GAA0B;AAG5C,CAAC;"}
+{"version":3,"file":"visualization.es122.js","sources":["../../../node_modules/.pnpm/@popperjs+core@2.11.8/node_modules/@popperjs/core/lib/modifiers/applyStyles.js"],"sourcesContent":["import getNodeName from \"../dom-utils/getNodeName.js\";\nimport { isHTMLElement } from \"../dom-utils/instanceOf.js\"; // This modifier takes the styles prepared by the `computeStyles` modifier\n// and applies them to the HTMLElements such as popper and arrow\n\nfunction applyStyles(_ref) {\n  var state = _ref.state;\n  Object.keys(state.elements).forEach(function (name) {\n    var style = state.styles[name] || {};\n    var attributes = state.attributes[name] || {};\n    var element = state.elements[name]; // arrow is optional + virtual elements\n\n    if (!isHTMLElement(element) || !getNodeName(element)) {\n      return;\n    } // Flow doesn't support to extend this property, but it's the most\n    // effective way to apply styles to an HTMLElement\n    // $FlowFixMe[cannot-write]\n\n\n    Object.assign(element.style, style);\n    Object.keys(attributes).forEach(function (name) {\n      var value = attributes[name];\n\n      if (value === false) {\n        element.removeAttribute(name);\n      } else {\n        element.setAttribute(name, value === true ? '' : value);\n      }\n    });\n  });\n}\n\nfunction effect(_ref2) {\n  var state = _ref2.state;\n  var initialStyles = {\n    popper: {\n      position: state.options.strategy,\n      left: '0',\n      top: '0',\n      margin: '0'\n    },\n    arrow: {\n      position: 'absolute'\n    },\n    reference: {}\n  };\n  Object.assign(state.elements.popper.style, initialStyles.popper);\n  state.styles = initialStyles;\n\n  if (state.elements.arrow) {\n    Object.assign(state.elements.arrow.style, initialStyles.arrow);\n  }\n\n  return function () {\n    Object.keys(state.elements).forEach(function (name) {\n      var element = state.elements[name];\n      var attributes = state.attributes[name] || {};\n      var styleProperties = Object.keys(state.styles.hasOwnProperty(name) ? state.styles[name] : initialStyles[name]); // Set all values to an empty string to unset them\n\n      var style = styleProperties.reduce(function (style, property) {\n        style[property] = '';\n        return style;\n      }, {}); // arrow is optional + virtual elements\n\n      if (!isHTMLElement(element) || !getNodeName(element)) {\n        return;\n      }\n\n      Object.assign(element.style, style);\n      Object.keys(attributes).forEach(function (attribute) {\n        element.removeAttribute(attribute);\n      });\n    });\n  };\n} // eslint-disable-next-line import/no-unused-modules\n\n\nexport default {\n  name: 'applyStyles',\n  enabled: true,\n  phase: 'write',\n  fn: applyStyles,\n  effect: effect,\n  requires: ['computeStyles']\n};"],"names":["applyStyles","_ref","state","name","style","attributes","element","isHTMLElement","getNodeName","value","effect","_ref2","initialStyles","styleProperties","property","attribute","applyStyles$1"],"mappings":";;AAIA,SAASA,EAAYC,GAAM;AACzB,MAAIC,IAAQD,EAAK;AACjB,SAAO,KAAKC,EAAM,QAAQ,EAAE,QAAQ,SAAUC,GAAM;AAClD,QAAIC,IAAQF,EAAM,OAAOC,CAAI,KAAK,CAAA,GAC9BE,IAAaH,EAAM,WAAWC,CAAI,KAAK,CAAA,GACvCG,IAAUJ,EAAM,SAASC,CAAI;AAEjC,IAAI,CAACI,EAAcD,CAAO,KAAK,CAACE,EAAYF,CAAO,MAOnD,OAAO,OAAOA,EAAQ,OAAOF,CAAK,GAClC,OAAO,KAAKC,CAAU,EAAE,QAAQ,SAAUF,GAAM;AAC9C,UAAIM,IAAQJ,EAAWF,CAAI;AAE3B,MAAIM,MAAU,KACZH,EAAQ,gBAAgBH,CAAI,IAE5BG,EAAQ,aAAaH,GAAMM,MAAU,KAAO,KAAKA,CAAK;AAAA,IAE1D,CAAC;AAAA,EACH,CAAC;AACH;AAEA,SAASC,EAAOC,GAAO;AACrB,MAAIT,IAAQS,EAAM,OACdC,IAAgB;AAAA,IAClB,QAAQ;AAAA,MACN,UAAUV,EAAM,QAAQ;AAAA,MACxB,MAAM;AAAA,MACN,KAAK;AAAA,MACL,QAAQ;AAAA,IACd;AAAA,IACI,OAAO;AAAA,MACL,UAAU;AAAA,IAChB;AAAA,IACI,WAAW,CAAA;AAAA,EACf;AACE,gBAAO,OAAOA,EAAM,SAAS,OAAO,OAAOU,EAAc,MAAM,GAC/DV,EAAM,SAASU,GAEXV,EAAM,SAAS,SACjB,OAAO,OAAOA,EAAM,SAAS,MAAM,OAAOU,EAAc,KAAK,GAGxD,WAAY;AACjB,WAAO,KAAKV,EAAM,QAAQ,EAAE,QAAQ,SAAUC,GAAM;AAClD,UAAIG,IAAUJ,EAAM,SAASC,CAAI,GAC7BE,IAAaH,EAAM,WAAWC,CAAI,KAAK,CAAA,GACvCU,IAAkB,OAAO,KAAKX,EAAM,OAAO,eAAeC,CAAI,IAAID,EAAM,OAAOC,CAAI,IAAIS,EAAcT,CAAI,CAAC,GAE1GC,IAAQS,EAAgB,OAAO,SAAUT,GAAOU,GAAU;AAC5D,eAAAV,EAAMU,CAAQ,IAAI,IACXV;AAAA,MACT,GAAG,CAAA,CAAE;AAEL,MAAI,CAACG,EAAcD,CAAO,KAAK,CAACE,EAAYF,CAAO,MAInD,OAAO,OAAOA,EAAQ,OAAOF,CAAK,GAClC,OAAO,KAAKC,CAAU,EAAE,QAAQ,SAAUU,GAAW;AACnD,QAAAT,EAAQ,gBAAgBS,CAAS;AAAA,MACnC,CAAC;AAAA,IACH,CAAC;AAAA,EACH;AACF;AAGA,MAAAC,IAAe;AAAA,EACb,MAAM;AAAA,EACN,SAAS;AAAA,EACT,OAAO;AAAA,EACP,IAAIhB;AAAA,EACJ,QAAQU;AAAA,EACR,UAAU,CAAC,eAAe;AAC5B;","x_google_ignoreList":[0]}

package/dist/visualization.es123.js

@@ -1,29 +1,147 @@
-import { jsx as u, jsxs as k } from "react/jsx-runtime";
-import { c as g } from "react/compiler-runtime";
-import { memo as j } from "react";
-import O from "./visualization.es32.js";
-const F = j(function(L) {
-  const t = g(16), {
-    nodeX: N,
-    color: e,
-    baseNodeX: f,
-    baseNodeY: i,
-    label: a,
-    fontSize: n,
-    fontFamily: c,
-    strokeWidth: m
-  } = L, s = N * 180 / Math.PI - 90, d = s > 90 || s < -90, $ = d ? s + 180 : s, p = d ? "end" : "start", x = d ? -6 : 6, b = `rotate(${$}) translate(0, ${(n ?? 2.4) / 3})`, h = a === "Human" ? `${a} ★★★` : a;
-  let o;
-  t[0] !== e || t[1] !== c || t[2] !== n || t[3] !== m || t[4] !== b || t[5] !== h || t[6] !== p || t[7] !== x ? (o = /* @__PURE__ */ u("text", { fontSize: n, fontFamily: c, fill: e, stroke: e, strokeWidth: m, paintOrder: "stroke", transform: b, textAnchor: p, x, children: h }), t[0] = e, t[1] = c, t[2] = n, t[3] = m, t[4] = b, t[5] = h, t[6] = p, t[7] = x, t[8] = o) : o = t[8];
-  let r;
-  t[9] !== e ? (r = /* @__PURE__ */ u("circle", { r: 1.5, fill: e }), t[9] = e, t[10] = r) : r = t[10];
-  let l;
-  return t[11] !== f || t[12] !== i || t[13] !== o || t[14] !== r ? (l = /* @__PURE__ */ k(O, { top: i, left: f, children: [
-    o,
-    r
-  ] }), t[11] = f, t[12] = i, t[13] = o, t[14] = r, t[15] = l) : l = t[15], l;
-});
+import { jsxs as m, jsx as u } from "react/jsx-runtime";
+import { c as B } from "react/compiler-runtime";
+import w from "@mui/material/Checkbox";
+import { Typography as y } from "@mui/material";
+const G = (q) => {
+  const e = B(33), {
+    toggles: s,
+    onToggle: o,
+    simpleCategories: E,
+    edgeType: F,
+    colorFunc: n,
+    elements: h,
+    edges: p,
+    legendToggle: i,
+    legendNodeLabel: I,
+    legendEdgeLabel: g,
+    order: x,
+    uniqueCat: C
+  } = q;
+  let b;
+  if (e[0] !== p || e[1] !== i) {
+    let l;
+    e[3] !== i ? (l = (r) => i ? i(r) : r.category ? r.category : void 0, e[3] = i, e[4] = l) : l = e[4], b = Array.from(new Set(p.map(l))), e[0] = p, e[1] = i, e[2] = b;
+  } else
+    b = e[2];
+  const v = b;
+  let z;
+  e[5] !== x || e[6] !== E ? (z = x || Array.from(new Set(E)), e[5] = x, e[6] = E, e[7] = z) : z = e[7];
+  const S = z;
+  let k;
+  e[8] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (k = {
+    bottom: "10px",
+    zIndex: 1e3,
+    backgroundColor: "white",
+    borderRadius: "5px",
+    width: "225px",
+    padding: "5px"
+  }, e[8] = k) : k = e[8];
+  let A;
+  e[9] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (A = {
+    fontSize: "18px",
+    margin: "3px",
+    fontFamily: "Arial"
+  }, e[9] = A) : A = e[9];
+  const L = I || "Node Type";
+  let f;
+  e[10] !== L ? (f = /* @__PURE__ */ u(y, { style: A, children: L }), e[10] = L, e[11] = f) : f = e[11];
+  let d;
+  e[12] !== n || e[13] !== h || e[14] !== i || e[15] !== o || e[16] !== s || e[17] !== C || e[18] !== S ? (d = C ? C.map((l) => {
+    let r = "grey", t = "";
+    return h.forEach((a) => {
+      S.forEach((j) => {
+        if (n && i && i(a) === j && a.category === l) {
+          r = n(a), t = j;
+          return;
+        }
+      });
+    }), /* @__PURE__ */ m("div", { style: {
+      display: "flex",
+      alignItems: "center",
+      marginBottom: "4px"
+    }, children: [
+      /* @__PURE__ */ u(w, { checked: s[l], onChange: () => o(l), color: "primary", size: "small", style: {
+        padding: 0
+      } }),
+      /* @__PURE__ */ m(y, { variant: "body2", style: {
+        color: r,
+        marginLeft: "4px",
+        cursor: "pointer",
+        fontSize: "14px",
+        fontFamily: "Arial"
+      }, onClick: () => o(l), children: [
+        t,
+        " ",
+        i ? "(" : null,
+        i ? l : null,
+        i ? ")" : null
+      ] })
+    ] }, l);
+  }) : S.map((l) => {
+    let r = "grey", t = "";
+    return h.forEach((a) => {
+      n && i && i(a) === l && (r = n(a), t = a.category);
+    }), /* @__PURE__ */ m("div", { style: {
+      display: "flex",
+      alignItems: "center",
+      marginBottom: "4px"
+    }, children: [
+      /* @__PURE__ */ u(w, { checked: s[l], onChange: () => o(l), color: "primary", size: "small", style: {
+        padding: 0
+      } }),
+      /* @__PURE__ */ m(y, { variant: "body2", style: {
+        color: r,
+        marginLeft: "4px",
+        cursor: "pointer",
+        fontSize: "14px",
+        fontFamily: "Arial"
+      }, onClick: () => o(l), children: [
+        l,
+        " ",
+        i ? "(" : null,
+        i ? t : null,
+        i ? ")" : null
+      ] })
+    ] }, l);
+  }), e[12] = n, e[13] = h, e[14] = i, e[15] = o, e[16] = s, e[17] = C, e[18] = S, e[19] = d) : d = e[19];
+  let c;
+  e[20] !== n || e[21] !== F || e[22] !== v || e[23] !== p || e[24] !== g || e[25] !== i || e[26] !== o || e[27] !== s ? (c = F && v !== null ? /* @__PURE__ */ m("div", { children: [
+    /* @__PURE__ */ u(y, { style: {
+      fontSize: "18px",
+      margin: "3px",
+      fontFamily: "Arial"
+    }, children: g || "Edge Type" }),
+    v.map((l) => {
+      if (l === void 0)
+        return null;
+      let r = "grey";
+      return p.forEach((t) => {
+        (n && i && i(t) === l || n && t.category && t.category === l) && (r = n(t));
+      }), /* @__PURE__ */ m("div", { style: {
+        display: "flex",
+        alignItems: "center"
+      }, children: [
+        /* @__PURE__ */ u(w, { checked: s[l], onChange: () => o(l), color: "primary", size: "small", style: {
+          padding: 0
+        } }),
+        /* @__PURE__ */ u(y, { variant: "body2", style: {
+          color: r,
+          marginLeft: "4px",
+          cursor: "pointer",
+          fontSize: "14px",
+          fontFamily: "Arial"
+        }, onClick: () => o(l), children: l })
+      ] }, l);
+    })
+  ] }) : null, e[20] = n, e[21] = F, e[22] = v, e[23] = p, e[24] = g, e[25] = i, e[26] = o, e[27] = s, e[28] = c) : c = e[28];
+  let T;
+  return e[29] !== f || e[30] !== d || e[31] !== c ? (T = /* @__PURE__ */ m("div", { style: k, children: [
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+    d,
+    c
+  ] }), e[29] = f, e[30] = d, e[31] = c, e[32] = T) : T = e[32], T;
+};
 export {
-  F as LeafNodeLabel
+  G as default
 };
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package/dist/visualization.es123.js.map

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package/dist/visualization.es124.js

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+import { jsxs as a, jsx as t, Fragment as J } from "react/jsx-runtime";
+import { c as K } from "react/compiler-runtime";
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+import O from "@mui/material/Tooltip";
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