@weng-lab/visualization 2.4.0 → 2.4.1

package/dist/visualization.es122.js.map

@@ -1 +1 @@
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String(value) : value.toFixed(1);\n\nconst getTickValues = (minValue: number, maxValue: number) =>\n    Array.from({ length: NUM_TICKS }, (_, i) =>\n        minValue + (i * (maxValue - minValue)) / (NUM_TICKS - 1)\n    );\n\n// Canvas's measureText and the browser's actual SVG text layout don't agree to the sub-pixel,\n// and the gap widens with string length - pad generously so longer labels (more digits) don't\n// creep past the reserved width and get clipped by the svg's default overflow:hidden.\nconst LABEL_WIDTH_SAFETY_FACTOR = 1.15;\nconst RIGHT_PADDING = 6;\n\n// Full width needed to render the legend (color bar + ticks + tick labels) without\n// clipping, based on the widest formatted tick label for the given value range.\nexport const getHeatmapLegendWidth = (minValue: number, maxValue: number): number => {\n    const maxLabelWidth = Math.max(\n        ...getTickValues(minValue, maxValue).map((value) =>\n            measureTextWidth(formatTick(value), FONT_SIZE, FONT_FAMILY)\n        )\n    );\n    return BAR_WIDTH + TICK_WIDTH + LABEL_GAP + maxLabelWidth * LABEL_WIDTH_SAFETY_FACTOR + RIGHT_PADDING;\n};\n\nconst HeatmapLegend = ({ colors, minValue, maxValue, height }: HeatmapLegendProps) => {\n    const gradientId = \"heatmap-legend-gradient\";\n\n    const tickValues = getTickValues(minValue, maxValue);\n\n    const yScale = scaleLinear<number>({\n        domain: [maxValue, minValue],\n        range: [0, height],\n    });\n\n    return (\n        <Group>\n            <defs>\n                {/* The bar reads top (max) to bottom (min), so the gradient stops run in reverse\n                    color order to match how colors map to values in the heatmap cells. */}\n                <linearGradient id={gradientId} x1=\"0\" y1=\"0\" x2=\"0\" y2=\"1\">\n                    {colors.map((_, i) => (\n                        <stop\n                            key={i}\n                            offset={`${(i / (colors.length - 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+{"version":3,"file":"visualization.es122.js","sources":["../src/components/PhyloTree/LeafLinkExtension.tsx"],"sourcesContent":["import { motion } from \"framer-motion\";\nimport { useBranchLengthTransition } from \"./PhyloTree\";\nimport { memo } from \"react\";\nimport { TreeNode } from \"./types\";\n\n\nexport type LeafLinkExtensionProps = {\n  baseLeafLinkExtension: TreeNode[\"baseLeafLinkExtension\"]\n  scaledLeafLinkExtension: TreeNode[\"scaledLeafLinkExtension\"]\n  color: TreeNode[\"color\"];\n  strokeWidth: TreeNode[\"linkStrokeWidth\"]\n  useBranchLengths: boolean\n};\n\nexport const LeafLinkExtension = memo(function LinkExtension({\n  useBranchLengths,\n  color,\n  baseLeafLinkExtension,\n  scaledLeafLinkExtension,\n  strokeWidth\n}: LeafLinkExtensionProps) {\n\n  return (\n    <motion.line\n      strokeWidth={strokeWidth}\n      initial={false}\n      animate={useBranchLengths ? scaledLeafLinkExtension : baseLeafLinkExtension}\n      stroke={color}\n      transition={useBranchLengthTransition}\n    />\n  );\n});\n"],"names":["LeafLinkExtension","memo","useBranchLengths","color","baseLeafLinkExtension","scaledLeafLinkExtension","strokeWidth","jsx","motion","useBranchLengthTransition"],"mappings":";;;;AAcO,MAAMA,IAAoBC,EAAK,SAAuB;AAAA,EAC3DC,kBAAAA;AAAAA,EACAC,OAAAA;AAAAA,EACAC,uBAAAA;AAAAA,EACAC,yBAAAA;AAAAA,EACAC,aAAAA;AACsB,GAAG;AAEzB,SACE,gBAAAC,EAACC,EAAO,MAAP,EACC,aAAAF,GACA,SAAS,IACT,SAASJ,IAAmBG,IAA0BD,GACtD,QAAQD,GACR,YAAYM,GAA0B;AAG5C,CAAC;"}

package/dist/visualization.es123.js

@@ -1,25 +1,29 @@
-import r from "./visualization.es24.js";
-const i = "#d1d5db", c = 0.5, u = "none", L = (n) => `${n.row}-${n.column}`;
-function m(n, e) {
-  const [a, t] = e;
-  return r({
-    range: n,
-    domain: n.map((l, o) => a + o * (t - a) / (n.length - 1))
-  });
-}
-function p(n, e, a, t) {
-  const l = n == null;
-  return {
-    fill: l ? u : a ? t : e ?? t,
-    fillOpacity: l ? 0 : a ? c : 1
-  };
-}
+import { jsx as u, jsxs as k } from "react/jsx-runtime";
+import { c as g } from "react/compiler-runtime";
+import { memo as j } from "react";
+import O from "./visualization.es32.js";
+const F = j(function(L) {
+  const t = g(16), {
+    nodeX: N,
+    color: e,
+    baseNodeX: f,
+    baseNodeY: i,
+    label: a,
+    fontSize: n,
+    fontFamily: c,
+    strokeWidth: m
+  } = L, s = N * 180 / Math.PI - 90, d = s > 90 || s < -90, $ = d ? s + 180 : s, p = d ? "end" : "start", x = d ? -6 : 6, b = `rotate(${$}) translate(0, ${(n ?? 2.4) / 3})`, h = a === "Human" ? `${a} ★★★` : a;
+  let o;
+  t[0] !== e || t[1] !== c || t[2] !== n || t[3] !== m || t[4] !== b || t[5] !== h || t[6] !== p || t[7] !== x ? (o = /* @__PURE__ */ u("text", { fontSize: n, fontFamily: c, fill: e, stroke: e, strokeWidth: m, paintOrder: "stroke", transform: b, textAnchor: p, x, children: h }), t[0] = e, t[1] = c, t[2] = n, t[3] = m, t[4] = b, t[5] = h, t[6] = p, t[7] = x, t[8] = o) : o = t[8];
+  let r;
+  t[9] !== e ? (r = /* @__PURE__ */ u("circle", { r: 1.5, fill: e }), t[9] = e, t[10] = r) : r = t[10];
+  let l;
+  return t[11] !== f || t[12] !== i || t[13] !== o || t[14] !== r ? (l = /* @__PURE__ */ k(O, { top: i, left: f, children: [
+    o,
+    r
+  ] }), t[11] = f, t[12] = i, t[13] = o, t[14] = r, t[15] = l) : l = t[15], l;
+});
 export {
-  i as DEFAULT_DESELECTED_COLOR,
-  c as DESELECTED_OPACITY,
-  u as NULL_VALUE_COLOR,
-  L as cellKey,
-  m as getHeatmapColorScale,
-  p as resolveCellAppearance
+  F as LeafNodeLabel
 };
 //# sourceMappingURL=visualization.es123.js.map

package/dist/visualization.es123.js.map

@@ -1 +1 @@
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+{"version":3,"file":"visualization.es123.js","sources":["../src/components/PhyloTree/LeafNodeLabel.tsx"],"sourcesContent":["import { PhyloTreeProps, TreeNode } from \"./types\";\nimport { Group } from \"@visx/group\";\nimport { memo } from \"react\";\n\n\nexport type LeafNodeLabelProps = {\n  // node.x is the angle the node is at in radial layout while base/scaled are true x/y position in svg\n  nodeX: number;\n  baseNodeX: TreeNode[\"baseNodeX\"];\n  baseNodeY: TreeNode[\"baseNodeY\"];\n  label: TreeNode[\"label\"];\n  color: TreeNode[\"color\"];\n  fontSize: PhyloTreeProps[\"leafFontSize\"];\n  fontFamily: PhyloTreeProps[\"leafFontFamily\"];\n  strokeWidth: TreeNode[\"labelStrokeWidth\"]\n};\n\nexport const LeafNodeLabel = memo(function LeafNodeLabel({\n  nodeX,\n  color,\n  baseNodeX,\n  baseNodeY,\n  label,\n  fontSize,\n  fontFamily,\n  strokeWidth\n}: LeafNodeLabelProps) {\n  const angleDeg = (nodeX * 180) / Math.PI - 90;\n  const flip = angleDeg > 90 || angleDeg < -90;\n  const rotation = flip ? angleDeg + 180 : angleDeg;\n  const textAnchor: \"start\" | \"end\" = flip ? \"end\" : \"start\";\n  const xOffset = flip ? -6 : 6;\n\n  return (\n    <Group\n      top={baseNodeY}\n      left={baseNodeX}\n    >\n      <text\n        fontSize={fontSize}\n        fontFamily={fontFamily}\n        fill={color}\n        stroke={color}\n        strokeWidth={strokeWidth}\n        paintOrder=\"stroke\"\n        transform={`rotate(${rotation}) translate(0, ${(fontSize ?? 2.4) / 3})`}\n        textAnchor={textAnchor}\n        x={xOffset}\n      >\n        {label === \"Human\" ? `${label} \\u2605\\u2605\\u2605` : label}\n      </text>\n      <circle\n        r={1.5}\n        fill={color}\n      />\n    </Group>\n  );\n});\n"],"names":["LeafNodeLabel","memo","t0","$","_c","nodeX","color","baseNodeX","baseNodeY","label","fontSize","fontFamily","strokeWidth","angleDeg","Math","PI","flip","rotation","textAnchor","xOffset","t1","t2","t3","t4","jsx","t5","jsxs","Group"],"mappings":";;;;AAiBO,MAAMA,IAAgBC,EAAK,SAAAC,GAAA;AAAA,QAAAC,IAAAC,EAAA,EAAA,GAAuB;AAAA,IAAAC,OAAAA;AAAAA,IAAAC,OAAAA;AAAAA,IAAAC,WAAAA;AAAAA,IAAAC,WAAAA;AAAAA,IAAAC,OAAAA;AAAAA,IAAAC,UAAAA;AAAAA,IAAAC,YAAAA;AAAAA,IAAAC,aAAAA;AAAAA,EAAAA,IAAAV,GAUvDW,IAAkBR,IAAQ,MAAOS,KAAIC,KAAM,IAC3CC,IAAaH,IAAW,MAAMA,IAAW,KACzCI,IAAiBD,IAAOH,IAAW,MAAlBA,GACjBK,IAAoCF,IAAA,QAAA,SACpCG,IAAgBH,IAAA,KAAA,GAcCI,IAAA,UAAUH,CAAQ,mBAAmBP,KAAA,OAAmB,CAAC,KAInEW,IAAAZ,MAAU,UAAV,GAAuBA,CAAK,SAA5BA;AAAyD,MAAAa;AAAA,EAAAnB,EAAA,CAAA,MAAAG,KAAAH,EAAA,CAAA,MAAAQ,KAAAR,EAAA,CAAA,MAAAO,KAAAP,EAAA,CAAA,MAAAS,KAAAT,EAAA,CAAA,MAAAiB,KAAAjB,EAAA,CAAA,MAAAkB,KAAAlB,EAAA,CAAA,MAAAe,KAAAf,SAAAgB,KAX5DG,sBAAA,QAAA,EACYZ,UAAAA,GACEC,YAAAA,GACNL,MAAAA,GACEA,QAAAA,GACKM,aAAAA,GACF,YAAA,UACA,WAAAQ,GACCF,YAAAA,GACTC,GAEFE,UAAAA,GACH,GAAOlB,OAAAG,GAAAH,OAAAQ,GAAAR,OAAAO,GAAAP,OAAAS,GAAAT,OAAAiB,GAAAjB,OAAAkB,GAAAlB,OAAAe,GAAAf,OAAAgB,GAAAhB,OAAAmB,KAAAA,IAAAnB,EAAA,CAAA;AAAA,MAAAoB;AAAA,EAAApB,SAAAG,KACPiB,IAAA,gBAAAC,EAAA,UAAA,EACK,GAAA,KACGlB,MAAAA,GAAK,GACXH,OAAAG,GAAAH,QAAAoB,KAAAA,IAAApB,EAAA,EAAA;AAAA,MAAAsB;AAAA,SAAAtB,EAAA,EAAA,MAAAI,KAAAJ,EAAA,EAAA,MAAAK,KAAAL,EAAA,EAAA,MAAAmB,KAAAnB,UAAAoB,KApBJE,IAAA,gBAAAC,EAACC,GAAA,EACMnB,KAAAA,GACCD,SAENe,UAAAA;AAAAA,IAAAA;AAAAA,IAaAC;AAAAA,EAAAA,GAIF,GAAQpB,QAAAI,GAAAJ,QAAAK,GAAAL,QAAAmB,GAAAnB,QAAAoB,GAAApB,QAAAsB,KAAAA,IAAAtB,EAAA,EAAA,GArBRsB;AAqBQ,CAEX;"}

package/dist/visualization.es124.js

@@ -1,63 +1,35 @@
-import { jsx as L, jsxs as U, Fragment as W } from "react/jsx-runtime";
-import { c as b } from "react/compiler-runtime";
-import { memo as q, useRef as z } from "react";
-import G from "./visualization.es129.js";
-import { getHeatmapColorScale as I, cellKey as j, DEFAULT_DESELECTED_COLOR as J, resolveCellAppearance as N } from "./visualization.es123.js";
-import { getBins as Q } from "./visualization.es84.js";
-import { useStableCallback as X } from "./visualization.es19.js";
-import Y from "./visualization.es231.js";
-import Z from "./visualization.es232.js";
-import ee from "./visualization.es12.js";
-const fe = q(function(w) {
-  const e = b(32), {
-    data: u,
-    xScale: h,
-    yScale: H,
-    colors: S,
-    minValue: O,
-    maxValue: g,
-    gap: y,
-    isRect: t,
-    binWidth: l,
-    binHeight: m,
-    animationType: x,
-    tooltipBody: r,
-    onClick: A,
-    selectedCells: n,
-    deselectedColor: V
-  } = w, E = O === void 0 ? 0 : O, R = V === void 0 ? J : V;
-  let p;
-  e[0] !== S || e[1] !== g || e[2] !== E ? (p = I(S, [E, g]), e[0] = S, e[1] = g, e[2] = E, e[3] = p) : p = e[3];
-  const k = p, D = Math.min(l, m) / 2;
-  let f;
-  e[4] !== n ? (f = n?.length ? new Set(n.map(j)) : null, e[4] = n, e[5] = f) : f = e[5];
-  const d = f, $ = z(null), T = X(A), v = t ? Y : Z;
-  let o;
-  e[6] !== m || e[7] !== l || e[8] !== t || e[9] !== D ? (o = t ? {
-    binWidth: l,
-    binHeight: m
-  } : {
-    radius: D
-  }, e[6] = m, e[7] = l, e[8] = t, e[9] = D, e[10] = o) : o = e[10];
-  let a;
-  e[11] !== x || e[12] !== l || e[13] !== R || e[14] !== T || e[15] !== t || e[16] !== d ? (a = (B) => B.map((F, K) => F.map((i) => {
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-    return /* @__PURE__ */ L(G, { bin: i, isRect: t, binWidth: l, fill: M, fillOpacity: P, colIndex: K, animationType: x, tooltipRef: $, onClick: T }, `heatmap-cell-${i.row}-${i.column}`);
-  })), e[11] = x, e[12] = l, e[13] = R, e[14] = T, e[15] = t, e[16] = d, e[17] = a) : a = e[17];
-  let c;
-  e[18] !== v || e[19] !== k || e[20] !== u || e[21] !== y || e[22] !== o || e[23] !== a || e[24] !== h || e[25] !== H ? (c = /* @__PURE__ */ L(v, { data: u, xScale: h, yScale: H, colorScale: k, bins: Q, gap: y, ...o, children: a }), e[18] = v, e[19] = k, e[20] = u, e[21] = y, e[22] = o, e[23] = a, e[24] = h, e[25] = H, e[26] = c) : c = e[26];
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-  e[27] !== r ? (s = r && /* @__PURE__ */ L(ee, { ref: $, children: r }), e[27] = r, e[28] = s) : s = e[28];
-  let C;
-  return e[29] !== c || e[30] !== s ? (C = /* @__PURE__ */ U(W, { children: [
-    c,
-    s
-  ] }), e[29] = c, e[30] = s, e[31] = C) : C = e[31], C;
-});
+import { jsx as u } from "react/jsx-runtime";
+import { c as S } from "react/compiler-runtime";
+import { getAnimationProps as T } from "./visualization.es20.js";
+import { getTrianglePoints as A } from "./visualization.es17.js";
+import { motion as W } from "./visualization.es27.js";
+const G = (k) => {
+  const o = S(19), {
+    pointData: g,
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package/dist/visualization.es124.js.map

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+import { jsxs as E, jsx as b } from "react/jsx-runtime";
+import { c as $ } from "react/compiler-runtime";
+import v from "./visualization.es32.js";
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+    }, t[6] = l, t[7] = n, t[8] = a, t[9] = f, t[10] = m) : m = t[10], s = x.map(m), t[0] = l, t[1] = n, t[2] = x, t[3] = a, t[4] = f, t[5] = s;
+  } else
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+function z(u) {
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+  H as default
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package/dist/visualization.es125.js.map

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