@weng-lab/visualization 2.4.0-beta.8 → 2.4.0

package/dist/visualization.es21.js.map

@@ -1 +1 @@
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+{"version":3,"file":"visualization.es21.js","sources":["../src/components/ViolinPlot/singleViolin.tsx"],"sourcesContent":["import { scaleLinear } from '@visx/scale';\nimport { max as d3max } from '@visx/vendor/d3-array';\nimport { curveBasis } from '@visx/curve';\nimport { line } from '@visx/shape';\nimport { range } from '@visx/vendor/d3-array';\nimport React, { useCallback, useMemo } from \"react\";\nimport CrossPlot from \"./crossPlot\";\nimport { calculateBoxStats, scottRule, silvermanRule, kernelDensityEstimator, gaussian, seededRandom } from \"./helpers\";\nimport { ViolinPoint, SingleViolinProps, TooltipData } from \"./types\";\nimport ViolinTooltip from \"./violinTooltip\";\nimport { Portal, useTooltip } from \"@visx/tooltip\";\n\nconst SingleViolin = <T,>({\n    distribution,\n    distIndex,\n    violinProps,\n    crossProps,\n    valueScale,\n    labelScale,\n    offset,\n    labels,\n    disableCrossPlot,\n    disableViolinPlot,\n    horizontal,\n    pointTooltipBody,\n    onViolinClicked,\n    onPointClicked\n}: SingleViolinProps<T>) => {\n\n    const {\n        tooltipData,\n        tooltipLeft,\n        tooltipTop,\n        tooltipOpen,\n        showTooltip,\n        hideTooltip,\n    } = useTooltip<TooltipData<T>>();\n\n    const data = distribution.data.flatMap(d => d.value)\n\n    //get all the stats for the box plot\n    const { min, max, firstQuartile, thirdQuartile, median, outliers } = calculateBoxStats(data, crossProps?.outliers ?? \"all\");\n\n    const outlierPoints: ViolinPoint<T>[] = distribution.data\n        .filter(d => outliers.includes(d.value))\n        .map(d => ({\n            ...d,\n            outlier: true\n        }));\n    const pointsNoOutliers: ViolinPoint<T>[] = distribution.data.filter(d => !outliers.includes(d.value))\n\n    const violinData = useMemo(() => {\n        const step = (max - min) / Math.max(100, data.length);\n        const ticks = range(min, max, step);\n\n        //bandwidth / binwidth for smoothing, based on user input\n        const bandwidth = typeof violinProps?.bandwidth === \"number\"\n            ? violinProps.bandwidth\n            : typeof violinProps?.bandwidth === \"function\"\n                ? violinProps.bandwidth(data)\n                : violinProps?.bandwidth === \"scott\"\n                    ? scottRule(data)\n                    : silvermanRule(data);\n\n        const kde = kernelDensityEstimator(gaussian(bandwidth), ticks);\n\n        const densityData = kde(data);\n\n        return [...densityData].sort((a, b) => a.value - b.value)\n    }, [data, max, min, violinProps])\n\n    const violinWidth = Math.min(labelScale.bandwidth(), 50);\n    const boxWidth = crossProps?.medianWidth ?? violinWidth * .25;\n\n    const violinTooltip: TooltipData<T> = useMemo(() => ({\n        label: distribution.label,\n        sampleSize: distribution.data.length,\n        median: median.toFixed(2),\n        firstQuartile: firstQuartile.toFixed(2),\n        thirdQuartile: thirdQuartile.toFixed(2)\n    }), [distribution.label, distribution.data.length, median, firstQuartile, thirdQuartile]);\n\n    const handleMouseMove = useCallback((event: React.MouseEvent<SVGPathElement>, data: TooltipData<T>, point?: ViolinPoint<T>) => {\n        showTooltip({\n            tooltipData: point && pointTooltipBody ? { point: point } : data,\n            tooltipLeft: event.pageX,\n            tooltipTop: event.pageY,\n        });\n    }, [pointTooltipBody, showTooltip]);\n\n    const handleViolinClick = () => {\n        if (!onViolinClicked || !tooltipData) return;\n\n        if (tooltipData) {\n            onViolinClicked(distribution);\n        }\n    };\n\n    const handlePointClick = (point: ViolinPoint<T>) => {\n        if (!onPointClicked || !tooltipData) return;\n\n        if (tooltipData) {\n            onPointClicked(point);\n        }\n    };\n\n    //center of each Violin\n    const violinCenter = horizontal ? (labelScale(labels[distIndex]) ?? 0) + violinWidth / 2 : (labelScale(labels[distIndex]) ?? 0) + offset + labelScale.bandwidth() / 2;\n    const widthScale = scaleLinear()\n        .domain([0, d3max(violinData, d => Math.abs(d.count)) || 1])\n        .range([0, violinWidth / 2]);\n\n    //filter out nan values if any\n    const filteredData = violinData.filter(d => d && d.count != null && d.value != null);\n\n    //mirror the data so that both sides are drawn\n    let points = [\n        ...filteredData.map(d => ({\n            x: violinCenter + (widthScale(d.count) as number),\n            y: valueScale(d.value),\n        })),\n        ...filteredData.slice().reverse().map(d => ({\n            x: violinCenter - (widthScale(d.count) as number),\n            y: valueScale(d.value),\n        }))\n    ];\n\n    // close the path at the second point instead of the first since points 0,1 are closer together\n    if (points.length > 2) {\n        const modifiedPoints = points.slice(1);\n        modifiedPoints.push(points[0]);\n        modifiedPoints.push(points[1]);\n        points = modifiedPoints;\n    }\n\n    const violinPath = line<{ x: number; y: number }>()\n        .x(d => horizontal ? d.y : d.x)\n        .y(d => horizontal ? d.x : d.y)\n        .curve(curveBasis)(points) ?? null;\n\n    return (\n        <React.Fragment key={`frag-${distIndex}`}>\n            {\n                //display plots if enough data provided\n                <g\n                    key={`group-${distIndex}`}\n                    onMouseLeave={hideTooltip}\n                    transform={horizontal ? `translate(${offset}, 0)` : `translate(0, 0)`}\n                >\n                    {distribution.data.length >= (violinProps?.pointDisplayThreshold ?? 3) && !disableViolinPlot && violinPath && (\n                        <>\n                            <path\n                                d={violinPath}\n                                fill={distribution.violinColor ?? 'none'}\n                                fillOpacity={distribution.opacity ?? 0.3}\n                                stroke={distribution.violinColor ?? 'black'}\n                                strokeOpacity={distribution.opacity ?? 1}\n                                strokeWidth={\n                                    tooltipData === violinTooltip\n                                        ? (violinProps?.stroke ?? 1) + 1\n                                        : violinProps?.stroke ?? 1\n                                }\n                                pointerEvents=\"all\"\n                                onMouseMove={(e) => handleMouseMove(e, violinTooltip)}\n                                onClick={handleViolinClick}\n                            />\n                        </>\n                    )\n                    }\n                    {distribution.data.length >= (violinProps?.pointDisplayThreshold ?? 3) && !disableCrossPlot &&\n                        <CrossPlot\n                            crossProps={crossProps}\n                            left={horizontal ? 0 : violinCenter}\n                            top={horizontal ? violinCenter : 0}\n                            median={median}\n                            firstQuartile={firstQuartile}\n                            thirdQuartile={thirdQuartile}\n                            valueScale={valueScale}\n                            medianWidth={boxWidth}\n                            tooltipData={tooltipData ?? {}}\n                            handleMouseMove={handleMouseMove}\n                            handleCrossClick={handleViolinClick}\n                            disableViolinPlot={disableViolinPlot}\n                            tooltip={violinTooltip}\n                            horizontal={horizontal}\n                        />\n                    }\n                    {/* Outliers */}\n                    {outlierPoints.map((outlier, index) => {\n                        const vertcy = valueScale(outlier.value);\n                        const horizoncx = valueScale(outlier.value)\n                        const cx = horizontal ? horizoncx : violinCenter\n                        const cy = horizontal ? violinCenter : vertcy\n\n                        const pointTooltip = {\n                            outlier: true,\n                            label: distribution.label,\n                            value: outlier.value.toFixed(2),\n                        };\n\n                        const isHighlighted = pointTooltipBody\n                            ? tooltipData?.point === outlier :\n                            tooltipData?.label === pointTooltip.label &&\n                            tooltipData?.value === pointTooltip.value;\n\n                        const radius = outlier.radius ?? 4\n\n                        return (\n                            <circle\n                                key={`outlier-${index}`}\n                                cx={cx}\n                                cy={cy}\n                                r={isHighlighted ? radius + 1 : radius}\n                                stroke={isHighlighted ? \"#000000\" : (outlier.stroke ?? \"none\")}\n                                fill={outlier.color ?? distribution.violinColor ?? \"#000000\"}\n                                opacity={outlier.opacity ?? distribution.opacity ?? 1}\n                                pointerEvents=\"all\"\n                                onMouseMove={(e) => handleMouseMove(e, pointTooltip, outlier)}\n                                onClick={() => handlePointClick(outlier)}\n                            />\n                        )\n                    })}\n                    {/* show all poionts for each distribution */}\n                    {distribution.data.length >= (violinProps?.pointDisplayThreshold ?? 3) && violinProps?.showAllPoints &&\n                        pointsNoOutliers.map((point: ViolinPoint<T>, index: number) => {\n\n                            const vertcy = valueScale(point.value);\n                            const horizoncx = valueScale(point.value)\n\n                            const jitterAmount = violinProps?.jitter ?? 0;\n                            const seed = `${distribution.label}-${point}-${index}`;\n                            const jitterX = jitterAmount > 0\n                                ? (seededRandom(seed) - 0.5) * 2 * jitterAmount\n                                : 0;\n\n                            const cx = horizontal ? horizoncx : violinCenter + jitterX;\n                            const cy = horizontal ? violinCenter + jitterX : vertcy\n\n                            const pointTooltip = {\n                                label: distribution.label,\n                                value: point.value.toFixed(2),\n                            };\n\n                            const isHighlighted = pointTooltipBody\n                                ? tooltipData?.point === point :\n                                tooltipData?.label === pointTooltip.label &&\n                                tooltipData?.value === pointTooltip.value;\n\n                            const r = point.radius ?? 2\n                            const radius = isHighlighted ? r + 1 : r;\n\n                            return (\n                                <path\n                                    key={`${distIndex}-point-${index}`}\n                                    d={`M ${cx},${cy} m -${radius},0 a ${radius},${radius} 0 1,0 ${2 * radius},0 a ${radius},${radius} 0 1,0 -${2 * radius},0`}\n                                    stroke={isHighlighted ? \"black\" : (point.stroke ?? \"none\")}\n                                    fill={point.color ?? distribution.violinColor ?? \"black\"}\n                                    opacity={point.opacity ?? distribution.opacity ?? 1}\n                                    pointerEvents=\"all\"\n                                    onMouseMove={(e) => handleMouseMove(e, pointTooltip, point)}\n                                    onClick={() => handlePointClick(point)}\n                                />\n                            );\n                        })\n                    }\n                    {/* display points if data points are less than threshold (3) */}\n                    {distribution.data.length < (violinProps?.pointDisplayThreshold ?? 3) &&\n                        distribution.data.map((point: ViolinPoint<T>, index: number) => {\n                            const vertcy = valueScale(point.value);\n                            const horizoncx = valueScale(point.value)\n                            const cx = horizontal ? horizoncx : violinCenter\n                            const cy = horizontal ? violinCenter : vertcy\n                            const radius = point.radius ?? 2;\n\n                            const pointTooltip = {\n                                label: distribution.label,\n                                value: point.value.toFixed(2),\n                            };\n\n                            const isHighlighted = pointTooltipBody\n                                ? tooltipData?.point === point :\n                                tooltipData?.label === pointTooltip.label &&\n                                tooltipData?.value === pointTooltip.value;\n\n                            return (\n                                <circle\n                                    key={`thresh-${index}`}\n                                    cx={cx}\n                                    cy={cy}\n                                    r={isHighlighted ? radius + 1 : radius}\n                                    stroke={isHighlighted ? \"black\" : (point.stroke ?? \"none\")}\n                                    fill={point.color ?? distribution.violinColor ?? \"black\"}\n                                    opacity={point.opacity ?? distribution.opacity ?? 1}\n                                    pointerEvents=\"all\"\n                                    onMouseMove={(e) => handleMouseMove(e, pointTooltip, point)}\n                                    onClick={() => handlePointClick(point)}\n                                />\n                            );\n                        })}\n\n                </g>\n            }\n            {tooltipOpen && tooltipData 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-    width: o,
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-      })
-    })
-  });
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+  var r = this, n = [];
+  return r.each(function(t) {
+    t !== r && n.push({ source: t.parent, target: t });
+  }), n;
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+  a as default
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-    startDy: N,
-    transform: X
-  };
+function* l() {
+  var e = this, t, n = [e], i, r, h;
+  do
+    for (t = n.reverse(), n = []; e = t.pop(); )
+      if (yield e, i = e.children)
+        for (r = 0, h = i.length; r < h; ++r)
+          n.push(i[r]);
+  while (n.length);
 }
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package/dist/visualization.es214.js

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-  if (typeof document > "u") return null;
-  try {
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-    }
-    return Object.assign(e.style, i), e.textContent = n, e.getComputedTextLength();
-  } catch {
-    return null;
-  }
+import s from "react";
+import { parseMergedHandlers as a, Controller as f } from "./visualization.es493.js";
+import { r as u, e as d, f as l, s as p, w as m, m as g, h } from "./visualization.es494.js";
+import { C as H, E as R } from "./visualization.es494.js";
+function A(n, r = {}, t, o) {
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+  if (e.applyHandlers(n, o), e.applyConfig(r, t), s.useEffect(e.effect.bind(e)), s.useEffect(() => e.clean.bind(e), []), r.target === void 0)
+    return e.bind.bind(e);
+}
+function E(n) {
+  return n.forEach(u), function(t, o) {
+    const {
+      handlers: e,
+      nativeHandlers: i,
+      config: c
+    } = a(t, o || {});
+    return A(e, c, void 0, i);
+  };
+}
+function M(n, r) {
+  return E([d, l, p, m, g, h])(n, r || {});
 }
-const l = r(s, (n, i) => `${n}_${JSON.stringify(i)}`);
 export {
-  l as default
+  H as ConfigResolverMap,
+  R as EngineMap,
+  E as createUseGesture,
+  d as dragAction,
+  h as hoverAction,
+  g as moveAction,
+  l as pinchAction,
+  u as registerAction,
+  p as scrollAction,
+  M as useGesture,
+  m as wheelAction
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package/dist/visualization.es215.js

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-    if (e.has(r)) return e.get(r);
-    const u = a.apply(this, n);
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+  return {
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+    scaleY: 1,
+    translateX: 0,
+    translateY: 0,
+    skewX: 0,
+    skewY: 0
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+function u(e) {
+  let {
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+    scaleY: n = 1,
+    translateX: t = 0,
+    translateY: c = 0,
+    skewX: a = 0,
+    skewY: l = 0
+  } = e;
+  return {
+    scaleX: s,
+    scaleY: n,
+    translateX: t,
+    translateY: c,
+    skewX: a,
+    skewY: l
+  };
+}
+function X(e) {
+  let {
+    scaleX: s,
+    scaleY: n,
+    translateX: t,
+    translateY: c,
+    skewX: a,
+    skewY: l
+  } = e;
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+    translateX: (n * t - a * c) / -r,
+    translateY: (l * t - s * c) / r,
+    skewX: a / -r,
+    skewY: l / -r
+  };
+}
+function o(e, s) {
+  let {
+    x: n,
+    y: t
+  } = s;
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+    y: e.skewY * n + e.scaleY * t + e.translateY
+  };
+}
+function f(e, s) {
+  let {
+    x: n,
+    y: t
+  } = s;
+  return o(X(e), {
+    x: n,
+    y: t
+  });
+}
+function M(e) {
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+  });
+}
+function g(e, s) {
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+    translateY: s
+  });
+}
+function Y(e, s) {
+  return {
+    scaleX: e.scaleX * s.scaleX + e.skewX * s.skewY,
+    scaleY: e.skewY * s.skewX + e.scaleY * s.scaleY,
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+    skewY: e.skewY * s.scaleX + e.scaleY * s.skewY
+  };
+}
+function w() {
+  for (var e = arguments.length, s = new Array(e), n = 0; n < e; n++)
+    s[n] = arguments[n];
+  switch (s.length) {
+    case 0:
+      throw new Error("composeMatrices() requires arguments: was called with no args");
+    case 1:
+      return s[0];
+    case 2:
+      return Y(s[0], s[1]);
+    default: {
+      const [t, c, ...a] = s, l = Y(t, c);
+      return w(l, ...a);
+    }
+  }
+}
 export {
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+  f as applyInverseMatrixToPoint,
+  o as applyMatrixToPoint,
+  w as composeMatrices,
+  u as createMatrix,
+  k as identityMatrix,
+  X as inverseMatrix,
+  Y as multiplyMatrices,
+  M as scaleMatrix,
+  g as translateMatrix
 };
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package/dist/visualization.es216.js

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-import { __require as e } from "./visualization.es491.js";
-var o = e();
-const a = /* @__PURE__ */ r(o);
+import { isSVGElement as s, isSVGGraphicsElement as m, isSVGSVGElement as f } from "./visualization.es217.js";
+import p from "./visualization.es495.js";
+import c from "./visualization.es267.js";
+function G(t, i) {
+  if (!t || !i) return null;
+  const n = p(i), r = s(t) ? t.ownerSVGElement : t, o = m(r) ? r.getScreenCTM() : null;
+  if (f(r) && o) {
+    let e = r.createSVGPoint();
+    return e.x = n.x, e.y = n.y, e = e.matrixTransform(o.inverse()), new c({
+      x: e.x,
+      y: e.y
+    });
+  }
+  const l = t.getBoundingClientRect();
+  return new c({
+    x: n.x - l.left - t.clientLeft,
+    y: n.y - l.top - t.clientTop
+  });
+}
 export {
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+  G as default
 };
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package/dist/visualization.es216.js.map

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