@weng-lab/visualization 2.4.0-beta.4 → 2.4.0-beta.5

package/dist/src/components/ScatterPlot/ScatterPlotViewport.d.ts

@@ -2,7 +2,8 @@ import { default as React } from 'react';
 import { ScaleLinear } from '@visx/vendor/d3-scale';
 import { BackgroundGradient, ChartProps, CrosshairPosition, Point, SelectionMode, ZoomType } from './types';
 type ScatterPlotViewportProps<T extends object> = {
-    size: number;
+    width: number;
+    height: number;
     margin: {
         top: number;
         left: number;
@@ -37,6 +38,6 @@ type ScatterPlotViewportProps<T extends object> = {
     crosshair?: CrosshairPosition | null;
     divRef: React.RefObject<HTMLDivElement | null>;
 };
-declare const ScatterPlotViewport: <T extends object>({ size, margin, boundedWidth, boundedHeight, loading, pointData, animation, animationGroupSize, animationBuffer, xScale, yScale, zoom, selectMode, selectable, disableZoom, groupPointsAnchor, hoveredPoint, hoveredPoints, handleMouseMove, handleMouseLeave, onDisplayedPointsChange, onSelectionChange, onPointClicked, leftAxisLabel, bottomAxisLabel, border, originLine, backgroundGradient, crosshair, divRef, }: ScatterPlotViewportProps<T>) => import("react/jsx-runtime").JSX.Element;
+declare const ScatterPlotViewport: <T extends object>({ width, height, margin, boundedWidth, boundedHeight, loading, pointData, animation, animationGroupSize, animationBuffer, xScale, yScale, zoom, selectMode, selectable, disableZoom, groupPointsAnchor, hoveredPoint, hoveredPoints, handleMouseMove, handleMouseLeave, onDisplayedPointsChange, onSelectionChange, onPointClicked, leftAxisLabel, bottomAxisLabel, border, originLine, backgroundGradient, crosshair, divRef, }: ScatterPlotViewportProps<T>) => import("react/jsx-runtime").JSX.Element;
 export default ScatterPlotViewport;
 //# sourceMappingURL=ScatterPlotViewport.d.ts.map

package/dist/src/components/ScatterPlot/ScatterPlotViewport.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"ScatterPlotViewport.d.ts","sourceRoot":"","sources":["../../../../src/components/ScatterPlot/ScatterPlotViewport.tsx"],"names":[],"mappings":"AAAA,OAAO,KAA4D,MAAM,OAAO,CAAC;AASjF,OAAO,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AACpD,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,iBAAiB,EAAE,KAAK,EAAE,aAAa,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AAQ5G,KAAK,wBAAwB,CAAC,CAAC,SAAS,MAAM,IAAI;IAC9C,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE;QAAE,GAAG,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC;IACtC,YAAY,EAAE,MAAM,CAAC;IACrB,aAAa,EAAE,MAAM,CAAC;IACtB,OAAO,EAAE,OAAO,CAAC;IACjB,SAAS,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;IACtB,SAAS,CAAC,EAAE,UAAU,CAAC,CAAC,EAAE,OAAO,GAAG,SAAS,EAAE,OAAO,GAAG,SAAS,CAAC,CAAC,WAAW,CAAC,CAAC;IACjF,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,MAAM,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;IAC3C,MAAM,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;IAC3C,IAAI,EAAE,QAAQ,CAAC;IACf,UAAU,EAAE,aAAa,CAAC;IAC1B,UAAU,EAAE,OAAO,CAAC;IACpB,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,iBAAiB,CAAC,EAAE,MAAM,KAAK,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC;IAC7C,YAAY,EAAE,KAAK,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC;IAC9B,aAAa,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;IAC3B,eAAe,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,IAAI,EAAE,QAAQ,KAAK,IAAI,CAAC;IAC/E,gBAAgB,EAAE,MAAM,IAAI,CAAC;IAC7B,uBAAuB,CAAC,EAAE,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,KAAK,IAAI,CAAC;IACvD,iBAAiB,CAAC,EAAE,CAAC,cAAc,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,KAAK,IAAI,CAAC;IACzD,cAAc,CAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC;IAC3C,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,MAAM,EAAE,OAAO,CAAC;IAChB,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,kBAAkB,CAAC,EAAE,kBAAkB,CAAC;IACxC,wEAAwE;IACxE,SAAS,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAC;IACrC,MAAM,EAAE,KAAK,CAAC,SAAS,CAAC,cAAc,GAAG,IAAI,CAAC,CAAC;CAClD,CAAC;AAWF,QAAA,MAAM,mBAAmB,GAAI,CAAC,SAAS,MAAM,EAAE,kaAgC5C,wBAAwB,CAAC,CAAC,CAAC,4CAkc7B,CAAC;AAEF,eAAe,mBAAmB,CAAC"}

package/dist/src/components/ScatterPlot/scatterplot.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"scatterplot.d.ts","sourceRoot":"","sources":["../../../../src/components/ScatterPlot/scatterplot.tsx"],"names":[],"mappings":"AACA,OAAO,EAAE,UAAU,EAAY,MAAM,SAAS,CAAC;AAoC/C,QAAA,MAAM,WAAW,GAAI,CAAC,SAAS,MAAM,EAAE,CAAC,SAAS,OAAO,GAAG,SAAS,GAAG,SAAS,EAAE,CAAC,SAAS,OAAO,GAAG,SAAS,GAAG,SAAS,EACvH,OAAO,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,4CA4N7B,CAAA;AAED,eAAe,WAAW,CAAC"}
+{"version":3,"file":"scatterplot.d.ts","sourceRoot":"","sources":["../../../../src/components/ScatterPlot/scatterplot.tsx"],"names":[],"mappings":"AACA,OAAO,EAAE,UAAU,EAAY,MAAM,SAAS,CAAC;AAoC/C,QAAA,MAAM,WAAW,GAAI,CAAC,SAAS,MAAM,EAAE,CAAC,SAAS,OAAO,GAAG,SAAS,GAAG,SAAS,EAAE,CAAC,SAAS,OAAO,GAAG,SAAS,GAAG,SAAS,EACvH,OAAO,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,4CAuO7B,CAAA;AAED,eAAe,WAAW,CAAC"}

package/dist/src/components/ScatterPlot/types.d.ts

@@ -307,6 +307,18 @@ export type ChartProps<T, S extends boolean | undefined, Z extends boolean | und
      * "left"
      */
     controlsPosition?: "left" | "right";
+    /**
+     * Lock the plot to a square, sized to the shorter side of its container and centred in it.
+     *
+     * Off by default, in which case the plot fills the container and its aspect ratio follows
+     * whatever shape that is. Turn it on when the two axes are in the same units and a circle
+     * of points has to stay a circle - a PCA or UMAP embedding, say - rather than being
+     * stretched by the shape of the box it happens to sit in.
+     *
+     * @default
+     * false
+     */
+    square?: boolean;
 };
 export type BackgroundGradient = {
     /** Three-stop color scale [low, mid, high]. Defaults to ["red", "white", "blue"]. */

package/dist/src/components/ScatterPlot/types.d.ts.map

@@ -1 +1 @@
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package/dist/visualization.es10.js

@@ -1,18 +1,18 @@
 import { jsx as m } from "react/jsx-runtime";
 import { useState as N, useRef as P, useImperativeHandle as b } from "react";
-import H from "./visualization.es67.js";
-import { downloadSVGAsPNG as G, downloadAsSVG as I, getAnimationProps as k } from "./visualization.es43.js";
+import H from "./visualization.es43.js";
+import { downloadSVGAsPNG as G, downloadAsSVG as I, getAnimationProps as k } from "./visualization.es24.js";
 import { useResponsiveParentSize as B } from "./visualization.es18.js";
-import W from "./visualization.es68.js";
+import W from "./visualization.es44.js";
 import { ResponsiveContainer as A } from "./visualization.es14.js";
-import C from "./visualization.es69.js";
-import E from "./visualization.es70.js";
-import O from "./visualization.es71.js";
-import T from "./visualization.es72.js";
-import V from "./visualization.es73.js";
-import Y from "./visualization.es74.js";
-import j from "./visualization.es75.js";
-import { motion as q } from "./visualization.es49.js";
+import C from "./visualization.es45.js";
+import E from "./visualization.es46.js";
+import O from "./visualization.es47.js";
+import T from "./visualization.es48.js";
+import V from "./visualization.es49.js";
+import Y from "./visualization.es50.js";
+import j from "./visualization.es51.js";
+import { motion as q } from "./visualization.es42.js";
 const re = (t) => {
   const {
     parentRef: u,

package/dist/visualization.es100.js

@@ -1,18 +1,36 @@
-import a from "./visualization.es127.js";
-import { jsx as o } from "react/jsx-runtime";
-function c(r) {
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-  return /* @__PURE__ */ o("rect", {
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+import { jsx as s, jsxs as f } from "react/jsx-runtime";
+import { c as d } from "react/compiler-runtime";
+import u from "./visualization.es22.js";
+const $ = (i) => {
+  const t = d(7), {
+    left: e,
+    top: o,
+    data: r,
+    open: a,
+    pointTooltipBody: l
+  } = i;
+  if (!a || !r)
+    return null;
+  const c = e + 10;
+  let n;
+  t[0] !== r || t[1] !== l ? (n = l && r.point ? l(r.point) : Object.entries(r).map(g), t[0] = r, t[1] = l, t[2] = n) : n = t[2];
+  let p;
+  return t[3] !== c || t[4] !== n || t[5] !== o ? (p = /* @__PURE__ */ s(u, { left: c, top: o, children: n }), t[3] = c, t[4] = n, t[5] = o, t[6] = p) : p = t[6], p;
+};
+function m(i) {
+  return i.toUpperCase();
+}
+function g(i) {
+  const [t, e] = i, o = t.replace(/([a-z])([A-Z])/g, "$1 $2").replace(/^./, m);
+  return t === "outlier" ? /* @__PURE__ */ s("div", { children: /* @__PURE__ */ s("strong", { children: o }) }, t) : /* @__PURE__ */ f("div", { children: [
+    /* @__PURE__ */ f("strong", { children: [
+      o,
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+    ] }),
+    typeof e == "string" ? e.length > 45 ? `${e.replace(/_/g, " ").slice(0, 45)}...` : e.replace(/_/g, " ") : String(e)
+  ] }, t);
 }
 export {
-  c as default
+  $ as default
 };
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   }
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 }
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package/dist/visualization.es102.js

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-import { c as H } from "react/compiler-runtime";
-import B from "./visualization.es129.js";
-import I from "./visualization.es36.js";
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+import { jsx as h, jsxs as g, Fragment as p } from "react/jsx-runtime";
+import { c as v } from "react/compiler-runtime";
+import { measureTextWidth as y } from "./visualization.es103.js";
+const A = (m) => {
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+    color: r,
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+  const c = e - i / 2, d = x - 10.8;
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 };
 export {
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 };
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package/dist/visualization.es102.js.map

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package/dist/visualization.es103.js

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-import { jsx as s, jsxs as f } from "react/jsx-runtime";
-import { c as d } from "react/compiler-runtime";
-import u from "./visualization.es21.js";
-const $ = (i) => {
-  const t = d(7), {
-    left: e,
-    top: o,
-    data: r,
-    open: a,
-    pointTooltipBody: l
-  } = i;
-  if (!a || !r)
-    return null;
-  const c = e + 10;
-  let n;
-  t[0] !== r || t[1] !== l ? (n = l && r.point ? l(r.point) : Object.entries(r).map(g), t[0] = r, t[1] = l, t[2] = n) : n = t[2];
-  let p;
-  return t[3] !== c || t[4] !== n || t[5] !== o ? (p = /* @__PURE__ */ s(u, { left: c, top: o, children: n }), t[3] = c, t[4] = n, t[5] = o, t[6] = p) : p = t[6], p;
-};
-function m(i) {
-  return i.toUpperCase();
+function x(t, c, a, r) {
+  const n = (t.x0 + t.x1) / 2, e = (t.y0 + t.y1) / 2;
+  switch (c) {
+    case "topLeft":
+      return {
+        textX: t.x0 + 6,
+        textY: t.y0 + 10,
+        valueY: r ? t.y0 + 17 : t.y0 + 40,
+        valueX: r ? t.x1 - 6 : t.x0 + 6,
+        textAnchor: "start",
+        valueAnchor: r ? "end" : "start",
+        baseline: "hanging"
+      };
+    case "topRight":
+      return {
+        textX: t.x1 - 6,
+        textY: t.y0 + 10,
+        valueY: t.y0 + 40,
+        valueX: t.x1 - 6,
+        textAnchor: "end",
+        valueAnchor: "end",
+        baseline: "hanging"
+      };
+    case "bottomLeft":
+      return {
+        textX: t.x0 + 6,
+        textY: a ? t.y1 - 35 : t.y1 - 15,
+        valueY: t.y1 - 15,
+        valueX: t.x0 + 6,
+        textAnchor: "start",
+        valueAnchor: "start",
+        baseline: "alphabetic"
+      };
+    case "bottomRight":
+      return {
+        textX: t.x1 - 6,
+        textY: a ? t.y1 - 35 : t.y1 - 15,
+        valueY: t.y1 - 15,
+        valueX: t.x1 - 6,
+        textAnchor: "end",
+        valueAnchor: "end",
+        baseline: "alphabetic"
+      };
+    default:
+      return {
+        textX: n,
+        textY: a ? e - 5 : e + 5,
+        valueY: e + 15,
+        valueX: n,
+        textAnchor: "middle",
+        valueAnchor: "middle",
+        baseline: "middle"
+      };
+  }
+}
+function l(t, c, a) {
+  const u = document.createElement("canvas").getContext("2d");
+  return u ? (u.font = `${c}px ${a}`, u.measureText(t).width) : 0;
 }
-function g(i) {
-  const [t, e] = i, o = t.replace(/([a-z])([A-Z])/g, "$1 $2").replace(/^./, m);
-  return t === "outlier" ? /* @__PURE__ */ s("div", { children: /* @__PURE__ */ s("strong", { children: o }) }, t) : /* @__PURE__ */ f("div", { children: [
-    /* @__PURE__ */ f("strong", { children: [
-      o,
-      ": "
-    ] }),
-    typeof e == "string" ? e.length > 45 ? `${e.replace(/_/g, " ").slice(0, 45)}...` : e.replace(/_/g, " ") : String(e)
-  ] }, t);
+function s(t, c, a, r) {
+  const n = document.createElement("canvas").getContext("2d");
+  if (!n || (n.font = `${a}px ${r}`, n.measureText(t).width <= c)) return t;
+  let e = t;
+  for (; e.length > 0 && n.measureText(e + "…").width > c; )
+    e = e.slice(0, -1);
+  return e === "" ? "" : e + "...";
 }
 export {
-  $ as default
+  x as getLabelPlacement,
+  l as measureTextWidth,
+  s as truncateTextToWidth
 };
 //# sourceMappingURL=visualization.es103.js.map

package/dist/visualization.es103.js.map

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package/dist/visualization.es104.js

@@ -1,16 +1,61 @@
-function l(d, i) {
-  let e;
-  if (i === void 0)
-    for (const n of d)
-      n != null && (e < n || e === void 0 && n >= n) && (e = n);
-  else {
-    let n = -1;
-    for (let f of d)
-      (f = i(f, ++n, d)) != null && (e < f || e === void 0 && f >= f) && (e = f);
-  }
-  return e;
-}
+import { jsx as l, jsxs as _ } from "react/jsx-runtime";
+import { c as k } from "react/compiler-runtime";
+import { Add as y, Remove as C, SettingsBackupRestore as Z, Timeline as z } from "@mui/icons-material";
+import { Tooltip as b, IconButton as g } from "@mui/material";
+const T = (u) => {
+  const e = k(22), {
+    scaleZoom: t,
+    resetZoom: x,
+    toggleBranchLength: S
+  } = u;
+  let m;
+  e[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (m = {
+    position: "absolute",
+    margin: "4px",
+    display: "flex",
+    flexDirection: "column",
+    alignItems: "flex-start",
+    background: "rgba(255, 255, 255, 0.6)",
+    backdropFilter: "blur(2px)",
+    WebkitBackdropFilter: "blur(2px)",
+    border: "1px solid rgba(255, 255, 255, 0.3)",
+    boxShadow: "0 2px 8px rgba(0, 0, 0, 0.1)"
+  }, e[0] = m) : m = e[0];
+  let o;
+  e[1] !== t ? (o = () => t({
+    scaleX: 1.2,
+    scaleY: 1.2
+  }), e[1] = t, e[2] = o) : o = e[2];
+  let a;
+  e[3] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (a = /* @__PURE__ */ l(y, { fontSize: "small" }), e[3] = a) : a = e[3];
+  let i;
+  e[4] !== o ? (i = /* @__PURE__ */ l(b, { title: "Zoom In", placement: "right", children: /* @__PURE__ */ l(g, { onClick: o, children: a }) }), e[4] = o, e[5] = i) : i = e[5];
+  let r;
+  e[6] !== t ? (r = () => t({
+    scaleX: 0.8333333333333334,
+    scaleY: 0.8333333333333334
+  }), e[6] = t, e[7] = r) : r = e[7];
+  let f;
+  e[8] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (f = /* @__PURE__ */ l(C, { fontSize: "small" }), e[8] = f) : f = e[8];
+  let n;
+  e[9] !== r ? (n = /* @__PURE__ */ l(b, { title: "Zoom Out", placement: "right", children: /* @__PURE__ */ l(g, { onClick: r, children: f }) }), e[9] = r, e[10] = n) : n = e[10];
+  let h;
+  e[11] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (h = /* @__PURE__ */ l(Z, { fontSize: "small" }), e[11] = h) : h = e[11];
+  let c;
+  e[12] !== x ? (c = /* @__PURE__ */ l(b, { title: "Reset Zoom", placement: "right", children: /* @__PURE__ */ l(g, { onClick: x, children: h }) }), e[12] = x, e[13] = c) : c = e[13];
+  let p;
+  e[14] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (p = /* @__PURE__ */ l(z, { fontSize: "small" }), e[14] = p) : p = e[14];
+  let s;
+  e[15] !== S ? (s = /* @__PURE__ */ l(b, { title: "Toggle Evolutionary Distance", placement: "right", children: /* @__PURE__ */ l(g, { onClick: S, children: p }) }), e[15] = S, e[16] = s) : s = e[16];
+  let d;
+  return e[17] !== s || e[18] !== i || e[19] !== n || e[20] !== c ? (d = /* @__PURE__ */ _("div", { style: m, children: [
+    i,
+    n,
+    c,
+    s
+  ] }), e[17] = s, e[18] = i, e[19] = n, e[20] = c, e[21] = d) : d = e[21], d;
+};
 export {
-  l as default
+  T as ControlPanel
 };
 //# sourceMappingURL=visualization.es104.js.map