@weng-lab/visualization 2.4.0-beta.2 → 2.4.0-beta.3

package/dist/visualization.es109.js.map

@@ -1 +1 @@
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package/dist/visualization.es11.js

@@ -1,17 +1,17 @@
 import { jsx as n, jsxs as C, Fragment as z } from "react/jsx-runtime";
 import { useRef as E, useMemo as g, useImperativeHandle as J } from "react";
-import { getTextHeight as O } from "./visualization.es20.js";
-import K from "./visualization.es21.js";
-import { downloadSVGAsPNG as Q, downloadAsSVG as U, getAnimationProps as Z } from "./visualization.es22.js";
+import { getTextHeight as O } from "./visualization.es63.js";
+import K from "./visualization.es64.js";
+import { downloadSVGAsPNG as Q, downloadAsSVG as U, getAnimationProps as Z } from "./visualization.es40.js";
 import { useResponsiveParentSize as _ } from "./visualization.es18.js";
-import R from "./visualization.es23.js";
-import T from "./visualization.es24.js";
-import H from "./visualization.es25.js";
+import R from "./visualization.es43.js";
+import T from "./visualization.es22.js";
+import H from "./visualization.es23.js";
 import { ResponsiveContainer as p } from "./visualization.es14.js";
-import tt from "./visualization.es26.js";
-import { motion as et } from "./visualization.es27.js";
-import N from "./visualization.es28.js";
-import X from "./visualization.es29.js";
+import tt from "./visualization.es36.js";
+import { motion as et } from "./visualization.es65.js";
+import N from "./visualization.es24.js";
+import X from "./visualization.es66.js";
 const xt = (t) => {
   const {
     parentRef: F,

package/dist/visualization.es110.js

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+    for (const n of d)
+      n != null && (e < n || e === void 0 && n >= n) && (e = n);
+  else {
+    let n = -1;
+    for (let f of d)
+      (f = i(f, ++n, d)) != null && (e < f || e === void 0 && f >= f) && (e = f);
+  }
+  return e;
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 export {
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+  l as default
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package/dist/visualization.es111.js

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-    ref: s,
-    className: a("visx-bar", e),
-    ...t
-  });
+import { __module as O } from "./visualization.es112.js";
+import { __require as q } from "./visualization.es113.js";
+var j = O.exports, x;
+function W() {
+  return x ? O.exports : (x = 1, (function(b, Q) {
+    (function(c, d) {
+      b.exports = d(q());
+    })(j, function(F) {
+      return (
+        /******/
+        (function(c) {
+          var d = {};
+          function o(i) {
+            if (d[i])
+              return d[i].exports;
+            var n = d[i] = {
+              /******/
+              i,
+              /******/
+              l: !1,
+              /******/
+              exports: {}
+              /******/
+            };
+            return c[i].call(n.exports, n, n.exports, o), n.l = !0, n.exports;
+          }
+          return o.m = c, o.c = d, o.i = function(i) {
+            return i;
+          }, o.d = function(i, n, s) {
+            o.o(i, n) || Object.defineProperty(i, n, {
+              /******/
+              configurable: !1,
+              /******/
+              enumerable: !0,
+              /******/
+              get: s
+              /******/
+            });
+          }, o.n = function(i) {
+            var n = i && i.__esModule ? (
+              /******/
+              function() {
+                return i.default;
+              }
+            ) : (
+              /******/
+              function() {
+                return i;
+              }
+            );
+            return o.d(n, "a", n), n;
+          }, o.o = function(i, n) {
+            return Object.prototype.hasOwnProperty.call(i, n);
+          }, o.p = "", o(o.s = 1);
+        })([
+          /* 0 */
+          /***/
+          (function(c, d) {
+            c.exports = F;
+          }),
+          /* 1 */
+          /***/
+          (function(c, d, o) {
+            var i = o(0).layoutBase.LayoutConstants, n = o(0).layoutBase.FDLayoutConstants, s = o(0).CoSEConstants, H = o(0).CoSELayout, G = o(0).CoSENode, B = o(0).layoutBase.PointD, V = o(0).layoutBase.DimensionD, Y = {
+              // Called on `layoutready`
+              ready: function() {
+              },
+              // Called on `layoutstop`
+              stop: function() {
+              },
+              // 'draft', 'default' or 'proof" 
+              // - 'draft' fast cooling rate 
+              // - 'default' moderate cooling rate 
+              // - "proof" slow cooling rate
+              quality: "default",
+              // include labels in node dimensions
+              nodeDimensionsIncludeLabels: !1,
+              // number of ticks per frame; higher is faster but more jerky
+              refresh: 30,
+              // Whether to fit the network view after when done
+              fit: !0,
+              // Padding on fit
+              padding: 10,
+              // Whether to enable incremental mode
+              randomize: !0,
+              // Node repulsion (non overlapping) multiplier
+              nodeRepulsion: 4500,
+              // Ideal edge (non nested) length
+              idealEdgeLength: 50,
+              // Divisor to compute edge forces
+              edgeElasticity: 0.45,
+              // Nesting factor (multiplier) to compute ideal edge length for nested edges
+              nestingFactor: 0.1,
+              // Gravity force (constant)
+              gravity: 0.25,
+              // Maximum number of iterations to perform
+              numIter: 2500,
+              // For enabling tiling
+              tile: !0,
+              // Type of layout animation. The option set is {'during', 'end', false}
+              animate: "end",
+              // Duration for animate:end
+              animationDuration: 500,
+              // Represents the amount of the vertical space to put between the zero degree members during the tiling operation(can also be a function)
+              tilingPaddingVertical: 10,
+              // Represents the amount of the horizontal space to put between the zero degree members during the tiling operation(can also be a function)
+              tilingPaddingHorizontal: 10,
+              // Gravity range (constant) for compounds
+              gravityRangeCompound: 1.5,
+              // Gravity force (constant) for compounds
+              gravityCompound: 1,
+              // Gravity range (constant)
+              gravityRange: 3.8,
+              // Initial cooling factor for incremental layout
+              initialEnergyOnIncremental: 0.5
+            };
+            function h(u, t) {
+              var l = {};
+              for (var r in u)
+                l[r] = u[r];
+              for (var r in t)
+                l[r] = t[r];
+              return l;
+            }
+            function p(u) {
+              this.options = h(Y, u), w(this.options);
+            }
+            var w = function(t) {
+              t.nodeRepulsion != null && (s.DEFAULT_REPULSION_STRENGTH = n.DEFAULT_REPULSION_STRENGTH = t.nodeRepulsion), t.idealEdgeLength != null && (s.DEFAULT_EDGE_LENGTH = n.DEFAULT_EDGE_LENGTH = t.idealEdgeLength), t.edgeElasticity != null && (s.DEFAULT_SPRING_STRENGTH = n.DEFAULT_SPRING_STRENGTH = t.edgeElasticity), t.nestingFactor != null && (s.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = n.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = t.nestingFactor), t.gravity != null && (s.DEFAULT_GRAVITY_STRENGTH = n.DEFAULT_GRAVITY_STRENGTH = t.gravity), t.numIter != null && (s.MAX_ITERATIONS = n.MAX_ITERATIONS = t.numIter), t.gravityRange != null && (s.DEFAULT_GRAVITY_RANGE_FACTOR = n.DEFAULT_GRAVITY_RANGE_FACTOR = t.gravityRange), t.gravityCompound != null && (s.DEFAULT_COMPOUND_GRAVITY_STRENGTH = n.DEFAULT_COMPOUND_GRAVITY_STRENGTH = t.gravityCompound), t.gravityRangeCompound != null && (s.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = n.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = t.gravityRangeCompound), t.initialEnergyOnIncremental != null && (s.DEFAULT_COOLING_FACTOR_INCREMENTAL = n.DEFAULT_COOLING_FACTOR_INCREMENTAL = t.initialEnergyOnIncremental), t.quality == "draft" ? i.QUALITY = 0 : t.quality == "proof" ? i.QUALITY = 2 : i.QUALITY = 1, s.NODE_DIMENSIONS_INCLUDE_LABELS = n.NODE_DIMENSIONS_INCLUDE_LABELS = i.NODE_DIMENSIONS_INCLUDE_LABELS = t.nodeDimensionsIncludeLabels, s.DEFAULT_INCREMENTAL = n.DEFAULT_INCREMENTAL = i.DEFAULT_INCREMENTAL = !t.randomize, s.ANIMATE = n.ANIMATE = i.ANIMATE = t.animate, s.TILE = t.tile, s.TILING_PADDING_VERTICAL = typeof t.tilingPaddingVertical == "function" ? t.tilingPaddingVertical.call() : t.tilingPaddingVertical, s.TILING_PADDING_HORIZONTAL = typeof t.tilingPaddingHorizontal == "function" ? t.tilingPaddingHorizontal.call() : t.tilingPaddingHorizontal;
+            };
+            p.prototype.run = function() {
+              var u, t, l = this.options;
+              this.idToLNode = {};
+              var r = this.layout = new H(), a = this;
+              a.stopped = !1, this.cy = this.options.cy, this.cy.trigger({ type: "layoutstart", layout: this });
+              var e = r.newGraphManager();
+              this.gm = e;
+              var g = this.options.eles.nodes(), f = this.options.eles.edges();
+              this.root = e.addRoot(), this.processChildrenList(this.root, this.getTopMostNodes(g), r);
+              for (var E = 0; E < f.length; E++) {
+                var A = f[E], v = this.idToLNode[A.data("source")], D = this.idToLNode[A.data("target")];
+                if (v !== D && v.getEdgesBetween(D).length == 0) {
+                  var N = e.add(r.newEdge(), v, D);
+                  N.id = A.id();
+                }
+              }
+              var U = function(L, m) {
+                typeof L == "number" && (L = m);
+                var I = L.data("id"), R = a.idToLNode[I];
+                return {
+                  x: R.getRect().getCenterX(),
+                  y: R.getRect().getCenterY()
+                };
+              }, z = function S() {
+                for (var L = function() {
+                  l.fit && l.cy.fit(l.eles, l.padding), u || (u = !0, a.cy.one("layoutready", l.ready), a.cy.trigger({ type: "layoutready", layout: a }));
+                }, m = a.options.refresh, I, R = 0; R < m && !I; R++)
+                  I = a.stopped || a.layout.tick();
+                if (I) {
+                  r.checkLayoutSuccess() && !r.isSubLayout && r.doPostLayout(), r.tilingPostLayout && r.tilingPostLayout(), r.isLayoutFinished = !0, a.options.eles.nodes().positions(U), L(), a.cy.one("layoutstop", a.options.stop), a.cy.trigger({ type: "layoutstop", layout: a }), t && cancelAnimationFrame(t), u = !1;
+                  return;
+                }
+                var C = a.layout.getPositionsData();
+                l.eles.nodes().positions(function(y, k) {
+                  if (typeof y == "number" && (y = k), !y.isParent()) {
+                    for (var M = y.id(), T = C[M], _ = y; T == null && (T = C[_.data("parent")] || C["DummyCompound_" + _.data("parent")], C[M] = T, _ = _.parent()[0], _ != null); )
+                      ;
+                    return T != null ? {
+                      x: T.x,
+                      y: T.y
+                    } : {
+                      x: y.position("x"),
+                      y: y.position("y")
+                    };
+                  }
+                }), L(), t = requestAnimationFrame(S);
+              };
+              return r.addListener("layoutstarted", function() {
+                a.options.animate === "during" && (t = requestAnimationFrame(z));
+              }), r.runLayout(), this.options.animate !== "during" && (a.options.eles.nodes().not(":parent").layoutPositions(a, a.options, U), u = !1), this;
+            }, p.prototype.getTopMostNodes = function(u) {
+              for (var t = {}, l = 0; l < u.length; l++)
+                t[u[l].id()] = !0;
+              var r = u.filter(function(a, e) {
+                typeof a == "number" && (a = e);
+                for (var g = a.parent()[0]; g != null; ) {
+                  if (t[g.id()])
+                    return !1;
+                  g = g.parent()[0];
+                }
+                return !0;
+              });
+              return r;
+            }, p.prototype.processChildrenList = function(u, t, l) {
+              for (var r = t.length, a = 0; a < r; a++) {
+                var e = t[a], g = e.children(), f, E = e.layoutDimensions({
+                  nodeDimensionsIncludeLabels: this.options.nodeDimensionsIncludeLabels
+                });
+                if (e.outerWidth() != null && e.outerHeight() != null ? f = u.add(new G(l.graphManager, new B(e.position("x") - E.w / 2, e.position("y") - E.h / 2), new V(parseFloat(E.w), parseFloat(E.h)))) : f = u.add(new G(this.graphManager)), f.id = e.data("id"), f.paddingLeft = parseInt(e.css("padding")), f.paddingTop = parseInt(e.css("padding")), f.paddingRight = parseInt(e.css("padding")), f.paddingBottom = parseInt(e.css("padding")), this.options.nodeDimensionsIncludeLabels && e.isParent()) {
+                  var A = e.boundingBox({ includeLabels: !0, includeNodes: !1 }).w, v = e.boundingBox({ includeLabels: !0, includeNodes: !1 }).h, D = e.css("text-halign");
+                  f.labelWidth = A, f.labelHeight = v, f.labelPos = D;
+                }
+                if (this.idToLNode[e.data("id")] = f, isNaN(f.rect.x) && (f.rect.x = 0), isNaN(f.rect.y) && (f.rect.y = 0), g != null && g.length > 0) {
+                  var N;
+                  N = l.getGraphManager().add(l.newGraph(), f), this.processChildrenList(N, g, l);
+                }
+              }
+            }, p.prototype.stop = function() {
+              return this.stopped = !0, this;
+            };
+            var P = function(t) {
+              t("layout", "cose-bilkent", p);
+            };
+            typeof cytoscape < "u" && P(cytoscape), c.exports = P;
+          })
+          /******/
+        ])
+      );
+    });
+  })(O), O.exports);
 }
 export {
-  c as default
+  W as __require
 };
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package/dist/visualization.es112.js

@@ -1,61 +1,5 @@
-import { jsx as l, jsxs as _ } from "react/jsx-runtime";
-import { c as k } from "react/compiler-runtime";
-import { Add as y, Remove as C, SettingsBackupRestore as Z, Timeline as z } from "@mui/icons-material";
-import { Tooltip as b, IconButton as g } from "@mui/material";
-const T = (u) => {
-  const e = k(22), {
-    scaleZoom: t,
-    resetZoom: x,
-    toggleBranchLength: S
-  } = u;
-  let m;
-  e[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (m = {
-    position: "absolute",
-    margin: "4px",
-    display: "flex",
-    flexDirection: "column",
-    alignItems: "flex-start",
-    background: "rgba(255, 255, 255, 0.6)",
-    backdropFilter: "blur(2px)",
-    WebkitBackdropFilter: "blur(2px)",
-    border: "1px solid rgba(255, 255, 255, 0.3)",
-    boxShadow: "0 2px 8px rgba(0, 0, 0, 0.1)"
-  }, e[0] = m) : m = e[0];
-  let o;
-  e[1] !== t ? (o = () => t({
-    scaleX: 1.2,
-    scaleY: 1.2
-  }), e[1] = t, e[2] = o) : o = e[2];
-  let a;
-  e[3] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (a = /* @__PURE__ */ l(y, { fontSize: "small" }), e[3] = a) : a = e[3];
-  let i;
-  e[4] !== o ? (i = /* @__PURE__ */ l(b, { title: "Zoom In", placement: "right", children: /* @__PURE__ */ l(g, { onClick: o, children: a }) }), e[4] = o, e[5] = i) : i = e[5];
-  let r;
-  e[6] !== t ? (r = () => t({
-    scaleX: 0.8333333333333334,
-    scaleY: 0.8333333333333334
-  }), e[6] = t, e[7] = r) : r = e[7];
-  let f;
-  e[8] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (f = /* @__PURE__ */ l(C, { fontSize: "small" }), e[8] = f) : f = e[8];
-  let n;
-  e[9] !== r ? (n = /* @__PURE__ */ l(b, { title: "Zoom Out", placement: "right", children: /* @__PURE__ */ l(g, { onClick: r, children: f }) }), e[9] = r, e[10] = n) : n = e[10];
-  let h;
-  e[11] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (h = /* @__PURE__ */ l(Z, { fontSize: "small" }), e[11] = h) : h = e[11];
-  let c;
-  e[12] !== x ? (c = /* @__PURE__ */ l(b, { title: "Reset Zoom", placement: "right", children: /* @__PURE__ */ l(g, { onClick: x, children: h }) }), e[12] = x, e[13] = c) : c = e[13];
-  let p;
-  e[14] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (p = /* @__PURE__ */ l(z, { fontSize: "small" }), e[14] = p) : p = e[14];
-  let s;
-  e[15] !== S ? (s = /* @__PURE__ */ l(b, { title: "Toggle Evolutionary Distance", placement: "right", children: /* @__PURE__ */ l(g, { onClick: S, children: p }) }), e[15] = S, e[16] = s) : s = e[16];
-  let d;
-  return e[17] !== s || e[18] !== i || e[19] !== n || e[20] !== c ? (d = /* @__PURE__ */ _("div", { style: m, children: [
-    i,
-    n,
-    c,
-    s
-  ] }), e[17] = s, e[18] = i, e[19] = n, e[20] = c, e[21] = d) : d = e[21], d;
-};
+var e = { exports: {} };
 export {
-  T as ControlPanel
+  e as __module
 };
 //# sourceMappingURL=visualization.es112.js.map

package/dist/visualization.es112.js.map

@@ -1 +1 @@
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