@weng-lab/visualization 2.3.0 → 2.3.1

package/dist/visualization.es152.js.map

@@ -1 +1 @@
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+{"version":3,"file":"visualization.es152.js","sources":["../src/components/Heatmap/HeatmapCell.tsx"],"sourcesContent":["import { memo, MouseEvent } from \"react\";\nimport { motion } from \"framer-motion\";\nimport { getAnimationProps } from \"../../utility\";\nimport type { AnimationType } from \"../../utility\";\nimport type { AnyBin } from \"./HeatmapCells\";\nimport type { PlotTooltipRef } from \"../../tooltip\";\n\n/** Class on the <g> wrapping each cell. The hover rule keys off this. */\nexport const CELL_CLASS = \"visx-heatmap-cell\";\n/** Class on the <rect>/<circle> inside each cell. */\nexport const CELL_SHAPE_CLASS = \"visx-heatmap-cell-shape\";\n\n/**\n * Hover styling is plain CSS rather than React state: `:hover` costs no render at all, while\n * tracking hover in state re-renders on every cell the pointer crosses. Rendered once per chart\n * by Heatmap, inside the <svg> so it survives the SVG/PNG download serialization.\n *\n * The stroke is always painted in the cell's own fill color, so hovering only has to give it a\n * width. `strokeWidth={0}` below is a presentation attribute, which loses to any CSS rule - so\n * the hover rule wins without needing !important.\n *\n * `pointer-events: all` because cells with a null count render with fill=\"none\", and SVG's\n * default (visiblePainted) only treats painted area as a hit target - without this the pointer\n * falls through such a cell to the <svg> and it can never show its \"no data\" tooltip.\n */\nexport const heatmapCellStyles = `\n.${CELL_CLASS} { cursor: pointer; }\n.${CELL_SHAPE_CLASS} { transition: stroke-width 0.2s; pointer-events: all; }\n.${CELL_CLASS}:hover .${CELL_SHAPE_CLASS} { stroke-width: 2; }\n`;\n\nexport interface HeatmapCellProps {\n  bin: AnyBin;\n  isRect: boolean;\n  binWidth: number;\n  fill: string;\n  fillOpacity: number;\n  colIndex: number;\n  animationType?: AnimationType;\n  /** Stable for the life of the plot, so it never invalidates this cell's memoization. */\n  tooltipRef: PlotTooltipRef<AnyBin>;\n  onClick?: (bin: AnyBin) => void;\n}\n\n/**\n * visx rebuilds every bin object inside its own render, so `bin` always arrives with a fresh\n * identity and memo's default shallow compare can never bail out. Comparing the bin's fields\n * instead lets untouched cells skip re-rendering, which is what makes selection changes cheap:\n * only the cells whose appearance actually changed re-render, rather than the whole grid.\n *\n * `bin.bin` and `bin.datum` are the caller's own row/column data, which do keep identity, so a\n * reference check on those covers data and metadata changes.\n */\nconst binsEqual = (a: AnyBin, b: AnyBin): boolean => {\n  if (\n    a.row !== b.row ||\n    a.column !== b.column ||\n    a.count !== b.count ||\n    a.gap !== b.gap ||\n    a.color !== b.color ||\n    a.opacity !== b.opacity ||\n    a.bin !== b.bin ||\n    a.datum !== b.datum\n  ) {\n    return false;\n  }\n  // Rect and circle cells carry different geometry fields\n  if (\"x\" in a) {\n    return \"x\" in b && a.x === b.x && a.y === b.y && a.width === b.width && a.height === b.height;\n  }\n  return \"cy\" in b && a.cy === b.cy && a.r === b.r && a.radius === b.radius;\n};\n\n/**\n * Must compare every prop in HeatmapCellProps - one left out here would silently stop updating.\n */\nconst cellPropsEqual = (prev: HeatmapCellProps, next: HeatmapCellProps): boolean =>\n  prev.fill === next.fill &&\n  prev.fillOpacity === next.fillOpacity &&\n  prev.isRect === next.isRect &&\n  prev.binWidth === next.binWidth &&\n  prev.colIndex === next.colIndex &&\n  prev.animationType === next.animationType &&\n  prev.tooltipRef === next.tooltipRef &&\n  prev.onClick === next.onClick &&\n  binsEqual(prev.bin, next.bin);\n\nconst HeatmapCell = memo(function HeatmapCell({\n  bin, isRect, binWidth, fill, fillOpacity, colIndex,\n  animationType, tooltipRef, onClick,\n}: HeatmapCellProps) {\n  const isRectCell = isRect && \"width\" in bin && \"height\" in bin && \"x\" in bin && \"y\" in bin;\n  const isCircleCell = !isRect && \"cy\" in bin && \"r\" in bin;\n\n  const sharedProps = { fill, fillOpacity, stroke: fill, strokeWidth: 0 };\n\n  const Wrapper = animationType ? motion.g : \"g\";\n  const animProps = getAnimationProps(animationType as AnimationType, colIndex);\n\n  return (\n    <Wrapper\n      {...animProps}\n      className={CELL_CLASS}\n      onMouseMove={(event: MouseEvent<SVGElement>) => tooltipRef.current?.show(bin, event)}\n      onMouseLeave={() => tooltipRef.current?.hide()}\n      onClick={() => onClick?.(bin)}\n    >\n      {isRectCell ? 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package/dist/visualization.es153.js

@@ -1,14 +1,61 @@
-import l from "./visualization.es151.js";
-function u(t, r) {
-  if ((n = t.length) > 0) {
-    for (var f, n, o = 0, c = t[0].length, a; o < c; ++o) {
-      for (a = f = 0; f < n; ++f) a += t[f][o][1] || 0;
-      if (a) for (f = 0; f < n; ++f) t[f][o][1] /= a;
-    }
-    l(t, r);
-  }
-}
+import { jsx as l, jsxs as _ } from "react/jsx-runtime";
+import { c as k } from "react/compiler-runtime";
+import { Add as y, Remove as C, SettingsBackupRestore as Z, Timeline as z } from "@mui/icons-material";
+import { Tooltip as b, IconButton as g } from "@mui/material";
+const T = (u) => {
+  const e = k(22), {
+    scaleZoom: t,
+    resetZoom: x,
+    toggleBranchLength: S
+  } = u;
+  let m;
+  e[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (m = {
+    position: "absolute",
+    margin: "4px",
+    display: "flex",
+    flexDirection: "column",
+    alignItems: "flex-start",
+    background: "rgba(255, 255, 255, 0.6)",
+    backdropFilter: "blur(2px)",
+    WebkitBackdropFilter: "blur(2px)",
+    border: "1px solid rgba(255, 255, 255, 0.3)",
+    boxShadow: "0 2px 8px rgba(0, 0, 0, 0.1)"
+  }, e[0] = m) : m = e[0];
+  let o;
+  e[1] !== t ? (o = () => t({
+    scaleX: 1.2,
+    scaleY: 1.2
+  }), e[1] = t, e[2] = o) : o = e[2];
+  let a;
+  e[3] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (a = /* @__PURE__ */ l(y, { fontSize: "small" }), e[3] = a) : a = e[3];
+  let i;
+  e[4] !== o ? (i = /* @__PURE__ */ l(b, { title: "Zoom In", placement: "right", children: /* @__PURE__ */ l(g, { onClick: o, children: a }) }), e[4] = o, e[5] = i) : i = e[5];
+  let r;
+  e[6] !== t ? (r = () => t({
+    scaleX: 0.8333333333333334,
+    scaleY: 0.8333333333333334
+  }), e[6] = t, e[7] = r) : r = e[7];
+  let f;
+  e[8] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (f = /* @__PURE__ */ l(C, { fontSize: "small" }), e[8] = f) : f = e[8];
+  let n;
+  e[9] !== r ? (n = /* @__PURE__ */ l(b, { title: "Zoom Out", placement: "right", children: /* @__PURE__ */ l(g, { onClick: r, children: f }) }), e[9] = r, e[10] = n) : n = e[10];
+  let h;
+  e[11] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (h = /* @__PURE__ */ l(Z, { fontSize: "small" }), e[11] = h) : h = e[11];
+  let c;
+  e[12] !== x ? (c = /* @__PURE__ */ l(b, { title: "Reset Zoom", placement: "right", children: /* @__PURE__ */ l(g, { onClick: x, children: h }) }), e[12] = x, e[13] = c) : c = e[13];
+  let p;
+  e[14] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (p = /* @__PURE__ */ l(z, { fontSize: "small" }), e[14] = p) : p = e[14];
+  let s;
+  e[15] !== S ? (s = /* @__PURE__ */ l(b, { title: "Toggle Evolutionary Distance", placement: "right", children: /* @__PURE__ */ l(g, { onClick: S, children: p }) }), e[15] = S, e[16] = s) : s = e[16];
+  let d;
+  return e[17] !== s || e[18] !== i || e[19] !== n || e[20] !== c ? (d = /* @__PURE__ */ _("div", { style: m, children: [
+    i,
+    n,
+    c,
+    s
+  ] }), e[17] = s, e[18] = i, e[19] = n, e[20] = c, e[21] = d) : d = e[21], d;
+};
 export {
-  u as default
+  T as ControlPanel
 };
 //# sourceMappingURL=visualization.es153.js.map

package/dist/visualization.es153.js.map

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package/dist/visualization.es154.js

@@ -1,8 +1,35 @@
-import r from "./visualization.es155.js";
-function o(e) {
-  return r(e).reverse();
-}
+import { jsx as u } from "react/jsx-runtime";
+import { c as p } from "react/compiler-runtime";
+import { memo as g } from "react";
+import M from "./visualization.es77.js";
+const D = g((a) => {
+  const o = p(11), {
+    dragStart: r,
+    dragMove: s,
+    dragEnd: e,
+    scale: c,
+    isDragging: l
+  } = a;
+  let t;
+  o[0] !== e || o[1] !== l ? (t = () => {
+    l && e();
+  }, o[0] = e, o[1] = l, o[2] = t) : t = o[2];
+  let n;
+  o[3] !== c ? (n = (m) => {
+    const f = M(m) || {
+      x: 0,
+      y: 0
+    };
+    c({
+      scaleX: 1.5,
+      scaleY: 1.5,
+      point: f
+    });
+  }, o[3] = c, o[4] = n) : n = o[4];
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+});
 export {
-  o as default
+  D as ZoomSurface
 };
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package/dist/visualization.es154.js.map

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package/dist/visualization.es155.js

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-function t(n) {
-  for (var e = n.length, r = new Array(e); --e >= 0; ) r[e] = e;
-  return r;
-}
+import { jsx as e } from "react/jsx-runtime";
+import { useBranchLengthTransition as m } from "./visualization.es7.js";
+import { memo as a } from "react";
+import { motion as s } from "./visualization.es25.js";
+const c = a(function({
+  scaledLinkPath: o,
+  baseLinkPath: n,
+  color: r,
+  strokeWidth: i,
+  useBranchLengths: t
+}) {
+  return /* @__PURE__ */ e(s.path, { stroke: r, strokeWidth: i, fill: "none", initial: !1, strokeLinecap: "round", strokeLinejoin: "round", animate: {
+    d: t ? o : n
+  }, transition: {
+    d: m
+  } });
+});
 export {
-  t as default
+  c as TreeLink
 };
 //# sourceMappingURL=visualization.es155.js.map

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package/dist/visualization.es156.js

@@ -1,12 +1,17 @@
-import f from "./visualization.es253.js";
-import { sum as c } from "./visualization.es158.js";
-function h(r) {
-  var s = r.length, o, t, e = r.map(c), u = f(r), p = 0, a = 0, m = [], n = [];
-  for (o = 0; o < s; ++o)
-    t = u[o], p < a ? (p += e[t], m.push(t)) : (a += e[t], n.push(t));
-  return n.reverse().concat(m);
-}
+import { jsx as e } from "react/jsx-runtime";
+import { useBranchLengthTransition as m } from "./visualization.es7.js";
+import { memo as s } from "react";
+import { motion as a } from "./visualization.es25.js";
+const k = s(function({
+  useBranchLengths: n,
+  color: i,
+  baseLeafLinkExtension: o,
+  scaledLeafLinkExtension: t,
+  strokeWidth: r
+}) {
+  return /* @__PURE__ */ e(a.line, { strokeWidth: r, initial: !1, animate: n ? t : o, stroke: i, transition: m });
+});
 export {
-  h as default
+  k as LeafLinkExtension
 };
 //# sourceMappingURL=visualization.es156.js.map

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+{"version":3,"file":"visualization.es156.js","sources":["../src/components/PhyloTree/LeafLinkExtension.tsx"],"sourcesContent":["import { motion } from \"framer-motion\";\nimport { useBranchLengthTransition } from \"./PhyloTree\";\nimport { memo } from \"react\";\nimport { TreeNode } from \"./types\";\n\n\nexport type LeafLinkExtensionProps = {\n  baseLeafLinkExtension: TreeNode[\"baseLeafLinkExtension\"]\n  scaledLeafLinkExtension: TreeNode[\"scaledLeafLinkExtension\"]\n  color: TreeNode[\"color\"];\n  strokeWidth: TreeNode[\"linkStrokeWidth\"]\n  useBranchLengths: boolean\n};\n\nexport const LeafLinkExtension = memo(function LinkExtension({\n  useBranchLengths,\n  color,\n  baseLeafLinkExtension,\n  scaledLeafLinkExtension,\n  strokeWidth\n}: LeafLinkExtensionProps) {\n\n  return (\n    <motion.line\n      strokeWidth={strokeWidth}\n      initial={false}\n      animate={useBranchLengths ? scaledLeafLinkExtension : baseLeafLinkExtension}\n      stroke={color}\n      transition={useBranchLengthTransition}\n    />\n  );\n});\n"],"names":["LeafLinkExtension","memo","useBranchLengths","color","baseLeafLinkExtension","scaledLeafLinkExtension","strokeWidth","jsx","motion","useBranchLengthTransition"],"mappings":";;;;AAcO,MAAMA,IAAoBC,EAAK,SAAuB;AAAA,EAC3DC,kBAAAA;AAAAA,EACAC,OAAAA;AAAAA,EACAC,uBAAAA;AAAAA,EACAC,yBAAAA;AAAAA,EACAC,aAAAA;AACsB,GAAG;AAEzB,SACE,gBAAAC,EAACC,EAAO,MAAP,EACC,aAAAF,GACA,SAAS,IACT,SAASJ,IAAmBG,IAA0BD,GACtD,QAAQD,GACR,YAAYM,GAA0B;AAG5C,CAAC;"}

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@@ -1,8 +1,29 @@
-import r from "./visualization.es158.js";
-function t(e) {
-  return r(e).reverse();
-}
+import { jsx as u, jsxs as k } from "react/jsx-runtime";
+import { c as g } from "react/compiler-runtime";
+import { memo as j } from "react";
+import O from "./visualization.es24.js";
+const F = j(function(L) {
+  const t = g(16), {
+    nodeX: N,
+    color: e,
+    baseNodeX: f,
+    baseNodeY: i,
+    label: a,
+    fontSize: n,
+    fontFamily: c,
+    strokeWidth: m
+  } = L, s = N * 180 / Math.PI - 90, d = s > 90 || s < -90, $ = d ? s + 180 : s, p = d ? "end" : "start", x = d ? -6 : 6, b = `rotate(${$}) translate(0, ${(n ?? 2.4) / 3})`, h = a === "Human" ? `${a} ★★★` : a;
+  let o;
+  t[0] !== e || t[1] !== c || t[2] !== n || t[3] !== m || t[4] !== b || t[5] !== h || t[6] !== p || t[7] !== x ? (o = /* @__PURE__ */ u("text", { fontSize: n, fontFamily: c, fill: e, stroke: e, strokeWidth: m, paintOrder: "stroke", transform: b, textAnchor: p, x, children: h }), t[0] = e, t[1] = c, t[2] = n, t[3] = m, t[4] = b, t[5] = h, t[6] = p, t[7] = x, t[8] = o) : o = t[8];
+  let r;
+  t[9] !== e ? (r = /* @__PURE__ */ u("circle", { r: 1.5, fill: e }), t[9] = e, t[10] = r) : r = t[10];
+  let l;
+  return t[11] !== f || t[12] !== i || t[13] !== o || t[14] !== r ? (l = /* @__PURE__ */ k(O, { top: i, left: f, children: [
+    o,
+    r
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+});
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+import { c as S } from "react/compiler-runtime";
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+import { getTrianglePoints as A } from "./visualization.es42.js";
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-  }, t.context = function(n) {
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+import { jsxs as E, jsx as b } from "react/jsx-runtime";
+import { c as $ } from "react/compiler-runtime";
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+const H = (u) => {
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+  return u.label;
 }
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package/dist/visualization.es159.js.map

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3);\n                const angle = Math.atan2(cy - boundedHeight / 2, cx - boundedWidth / 2);\n                let cosA = Math.cos(angle);\n                let sinA = Math.sin(angle);\n\n                // Flip horizontal if text would overflow left/right\n                const lxRaw = cx + cosA * lineLen;\n                const textEndX = cosA >= 0 ? lxRaw + 4 + estTextWidth : lxRaw - 4 - estTextWidth;\n                if (textEndX > boundedWidth || textEndX < 0) cosA = -cosA;\n\n                // Flip vertical if line endpoint would overflow top/bottom\n                const lyRaw = cy + sinA * lineLen;\n                if (lyRaw < 0 || lyRaw > boundedHeight) sinA = -sinA;\n\n                const lx = cx + cosA * lineLen;\n                const ly = cy + sinA * lineLen;\n                const anchor = cosA >= 0 ? \"start\" : \"end\";\n\n                return (\n                    <g key={`lbl-${i}`} pointerEvents=\"none\">\n                        <line x1={cx + cosA * circleR} y1={cy + sinA * circleR} x2={lx} y2={ly} stroke=\"#555\" strokeWidth={1} />\n                        <text x={lx + (cosA >= 0 ? 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package/dist/visualization.es16.js

@@ -1,5 +1,5 @@
 import { c as u } from "react/compiler-runtime";
-import p from "./visualization.es18.js";
+import p from "./visualization.es52.js";
 function S(s, m) {
   const t = u(14);
   let o;