@weng-lab/visualization 2.2.2 → 2.3.1

package/dist/visualization.es154.js

@@ -1,64 +1,35 @@
-import l from "./visualization.es260.js";
-import f from "./visualization.es261.js";
-import s from "./visualization.es262.js";
-import c from "./visualization.es263.js";
-import d from "./visualization.es264.js";
-import y from "./visualization.es265.js";
-import u from "./visualization.es266.js";
-import g from "./visualization.es267.js";
-import w from "./visualization.es268.js";
-import O from "./visualization.es269.js";
-import R from "./visualization.es270.js";
-import v from "./visualization.es271.js";
-import x from "./visualization.es272.js";
-import A from "./visualization.es273.js";
-const h = [
-  // domain => nice => zero
-  "domain",
-  "nice",
-  "zero",
-  // interpolate before round
-  "interpolate",
-  "round",
-  // set range then reverse
-  "range",
-  "reverse",
-  // Order does not matter for these operators
-  "align",
-  "base",
-  "clamp",
-  "constant",
-  "exponent",
-  "padding",
-  "unknown"
-], E = {
-  domain: l,
-  nice: w,
-  zero: A,
-  interpolate: g,
-  round: v,
-  align: s,
-  base: c,
-  clamp: d,
-  constant: y,
-  exponent: u,
-  padding: O,
-  range: f,
-  reverse: R,
-  unknown: x
-};
-function k() {
-  for (var r = arguments.length, p = new Array(r), o = 0; o < r; o++)
-    p[o] = arguments[o];
-  const a = new Set(p), m = h.filter((n) => a.has(n));
-  return function(e, t) {
-    return typeof t < "u" && m.forEach((i) => {
-      E[i](e, t);
-    }), e;
-  };
-}
+import { jsx as u } from "react/jsx-runtime";
+import { c as p } from "react/compiler-runtime";
+import { memo as g } from "react";
+import M from "./visualization.es77.js";
+const D = g((a) => {
+  const o = p(11), {
+    dragStart: r,
+    dragMove: s,
+    dragEnd: e,
+    scale: c,
+    isDragging: l
+  } = a;
+  let t;
+  o[0] !== e || o[1] !== l ? (t = () => {
+    l && e();
+  }, o[0] = e, o[1] = l, o[2] = t) : t = o[2];
+  let n;
+  o[3] !== c ? (n = (m) => {
+    const f = M(m) || {
+      x: 0,
+      y: 0
+    };
+    c({
+      scaleX: 1.5,
+      scaleY: 1.5,
+      point: f
+    });
+  }, o[3] = c, o[4] = n) : n = o[4];
+  let i;
+  return o[5] !== e || o[6] !== s || o[7] !== r || o[8] !== t || o[9] !== n ? (i = /* @__PURE__ */ u("rect", { width: "100%", height: "100%", fill: "transparent", onTouchStart: r, onTouchMove: s, onTouchEnd: e, onMouseDown: r, onMouseMove: s, onMouseUp: e, onMouseLeave: t, onDoubleClick: n }), o[5] = e, o[6] = s, o[7] = r, o[8] = t, o[9] = n, o[10] = i) : i = o[10], i;
+});
 export {
-  h as ALL_OPERATORS,
-  k as default
+  D as ZoomSurface
 };
 //# sourceMappingURL=visualization.es154.js.map

package/dist/visualization.es154.js.map

@@ -1 +1 @@
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+{"version":3,"file":"visualization.es154.js","sources":["../src/components/PhyloTree/ZoomSurface.tsx"],"sourcesContent":["import { localPoint } from \"@visx/event\";\nimport { memo } from \"react\";\n\ntype ZoomSurfaceProps = {\n  dragStart: (event: React.TouchEvent | React.MouseEvent) => void;\n  dragMove: (event: React.TouchEvent | React.MouseEvent) => void;\n  dragEnd: () => void;\n  scale: (args: { scaleX: number; scaleY: number; point?: { x: number; y: number } }) => void;\n  isDragging: boolean;\n};\n\n\n/**\n * rect which catches and handles zoom events\n */\n\nexport const ZoomSurface = memo(\n  ({ dragStart, dragMove, dragEnd, scale, isDragging }: ZoomSurfaceProps) => {\n    return (\n      <rect\n        width=\"100%\"\n        height=\"100%\"\n        fill=\"transparent\"\n        onTouchStart={dragStart}\n        onTouchMove={dragMove}\n        onTouchEnd={dragEnd}\n        onMouseDown={dragStart}\n        onMouseMove={dragMove}\n        onMouseUp={dragEnd}\n        onMouseLeave={() => {\n          if (isDragging) dragEnd();\n        }}\n        onDoubleClick={(event) => {\n          const point = localPoint(event) || { x: 0, y: 0 };\n          scale({ scaleX: 1.5, scaleY: 1.5, point });\n        }}\n      />\n    );\n  }\n);"],"names":["ZoomSurface","memo","t0","$","_c","dragStart","dragMove","dragEnd","scale","isDragging","t1","t2","event","point","localPoint","x","y","scaleX","scaleY","t3","jsx"],"mappings":";;;;AAgBO,MAAMA,IAAcC,EACzBC,CAAAA,MAAA;AAAA,QAAAC,IAAAC,EAAA,EAAA,GAAC;AAAA,IAAAC,WAAAA;AAAAA,IAAAC,UAAAA;AAAAA,IAAAC,SAAAA;AAAAA,IAAAC,OAAAA;AAAAA,IAAAC,YAAAA;AAAAA,EAAAA,IAAAP;AAAqE,MAAAQ;AAAA,EAAAP,EAAA,CAAA,MAAAI,KAAAJ,SAAAM,KAYlDC,IAAAA,MAAA;AACZ,IAAID,KAAYF,EAAAA;AAAAA,EAAU,GAC3BJ,OAAAI,GAAAJ,OAAAM,GAAAN,OAAAO,KAAAA,IAAAP,EAAA,CAAA;AAAA,MAAAQ;AAAA,EAAAR,SAAAK,KACcG,IAAAC,CAAAA,MAAA;AACb,UAAAC,IAAcC,EAAWF,CAAuB,KAAlC;AAAA,MAAAG,GAA0B;AAAA,MAACC,GAAK;AAAA,IAAA;AAC9CR,IAAAA,EAAM;AAAA,MAAAS,QAAU;AAAA,MAAGC,QAAU;AAAA,MAAGL,OAAAA;AAAAA,IAAAA,CAAS;AAAA,EAAC,GAC3CV,OAAAK,GAAAL,OAAAQ,KAAAA,IAAAR,EAAA,CAAA;AAAA,MAAAgB;AAAA,SAAAhB,EAAA,CAAA,MAAAI,KAAAJ,EAAA,CAAA,MAAAG,KAAAH,EAAA,CAAA,MAAAE,KAAAF,EAAA,CAAA,MAAAO,KAAAP,SAAAQ,KAhBHQ,IAAA,gBAAAC,EAAA,UACQ,OAAA,QACC,QAAA,QACF,MAAA,eACSf,cAAAA,GACDC,aAAAA,GACDC,YAAAA,GACCF,aAAAA,GACAC,aAAAA,GACFC,WAAAA,GACG,cAAAG,GAGC,eAAAC,EAAAA,CAGd,GACDR,OAAAI,GAAAJ,OAAAG,GAAAH,OAAAE,GAAAF,OAAAO,GAAAP,OAAAQ,GAAAR,QAAAgB,KAAAA,IAAAhB,EAAA,EAAA,GAjBFgB;AAiBE,CAGR;"}

package/dist/visualization.es155.js

@@ -1,42 +1,21 @@
-import { initRange as v } from "./visualization.es712.js";
-import w from "./visualization.es158.js";
-import b from "./visualization.es57.js";
-function x() {
-  var r = w().unknown(void 0), f = r.domain, c = r.range, t = 0, e = 1, i, m, o = !1, u = 0, g = 0, l = 0.5;
-  delete r.unknown;
-  function a() {
-    var n = f().length, s = e < t, d = s ? e : t, h = s ? t : e;
-    i = (h - d) / Math.max(1, n - u + g * 2), o && (i = Math.floor(i)), d += (h - d - i * (n - u)) * l, m = i * (1 - u), o && (d = Math.round(d), m = Math.round(m));
-    var p = b(n).map(function(M) {
-      return d + i * M;
-    });
-    return c(s ? p.reverse() : p);
-  }
-  return r.domain = function(n) {
-    return arguments.length ? (f(n), a()) : f();
-  }, r.range = function(n) {
-    return arguments.length ? ([t, e] = n, t = +t, e = +e, a()) : [t, e];
-  }, r.rangeRound = function(n) {
-    return [t, e] = n, t = +t, e = +e, o = !0, a();
-  }, r.bandwidth = function() {
-    return m;
-  }, r.step = function() {
-    return i;
-  }, r.round = function(n) {
-    return arguments.length ? (o = !!n, a()) : o;
-  }, r.padding = function(n) {
-    return arguments.length ? (u = Math.min(1, g = +n), a()) : u;
-  }, r.paddingInner = function(n) {
-    return arguments.length ? (u = Math.min(1, n), a()) : u;
-  }, r.paddingOuter = function(n) {
-    return arguments.length ? (g = +n, a()) : g;
-  }, r.align = function(n) {
-    return arguments.length ? (l = Math.max(0, Math.min(1, n)), a()) : l;
-  }, r.copy = function() {
-    return x(f(), [t, e]).round(o).paddingInner(u).paddingOuter(g).align(l);
-  }, v.apply(a(), arguments);
-}
+import { jsx as e } from "react/jsx-runtime";
+import { useBranchLengthTransition as m } from "./visualization.es7.js";
+import { memo as a } from "react";
+import { motion as s } from "./visualization.es25.js";
+const c = a(function({
+  scaledLinkPath: o,
+  baseLinkPath: n,
+  color: r,
+  strokeWidth: i,
+  useBranchLengths: t
+}) {
+  return /* @__PURE__ */ e(s.path, { stroke: r, strokeWidth: i, fill: "none", initial: !1, strokeLinecap: "round", strokeLinejoin: "round", animate: {
+    d: t ? o : n
+  }, transition: {
+    d: m
+  } });
+});
 export {
-  x as default
+  c as TreeLink
 };
 //# sourceMappingURL=visualization.es155.js.map

package/dist/visualization.es155.js.map

@@ -1 +1 @@
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(domain(_), rescale()) : domain();\n  };\n\n  scale.range = function(_) {\n    return arguments.length ? ([r0, r1] = _, r0 = +r0, r1 = +r1, rescale()) : [r0, r1];\n  };\n\n  scale.rangeRound = function(_) {\n    return [r0, r1] = _, r0 = +r0, r1 = +r1, round = true, rescale();\n  };\n\n  scale.bandwidth = function() {\n    return bandwidth;\n  };\n\n  scale.step = function() {\n    return step;\n  };\n\n  scale.round = function(_) {\n    return arguments.length ? (round = !!_, rescale()) : round;\n  };\n\n  scale.padding = function(_) {\n    return arguments.length ? (paddingInner = Math.min(1, paddingOuter = +_), rescale()) : paddingInner;\n  };\n\n  scale.paddingInner = function(_) {\n    return arguments.length ? (paddingInner = Math.min(1, _), rescale()) : paddingInner;\n  };\n\n  scale.paddingOuter = function(_) {\n    return arguments.length ? (paddingOuter = +_, rescale()) : paddingOuter;\n  };\n\n  scale.align = function(_) {\n    return arguments.length ? 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+{"version":3,"file":"visualization.es155.js","sources":["../src/components/PhyloTree/TreeLink.tsx"],"sourcesContent":["import { TreeNode } from \"./types\";\nimport { motion } from \"framer-motion\";\nimport { useBranchLengthTransition } from \"./PhyloTree\";\nimport { memo } from \"react\";\n\nexport type TreeLinkProps = {\n  scaledLinkPath: TreeNode[\"scaledLinkPath\"]\n  baseLinkPath: TreeNode[\"baseLinkPath\"]\n  color: TreeNode[\"color\"]\n  strokeWidth: TreeNode[\"linkStrokeWidth\"]\n  useBranchLengths: boolean;\n};\n\n/**\n * Link from node to its parent\n */\nexport const TreeLink = memo(function TreeLink({\n  scaledLinkPath,\n  baseLinkPath,\n  color,\n  strokeWidth,\n  useBranchLengths,\n}: TreeLinkProps) {\n  return (\n    <motion.path\n      stroke={color}\n      strokeWidth={strokeWidth}\n      fill=\"none\"\n      initial={false}\n      strokeLinecap={\"round\"}\n      strokeLinejoin={\"round\"}\n      animate={{\n        d: useBranchLengths ? scaledLinkPath : baseLinkPath,\n      }}\n      transition={{\n        d: useBranchLengthTransition,\n      }}\n    />\n  );\n})\n"],"names":["TreeLink","memo","scaledLinkPath","baseLinkPath","color","strokeWidth","useBranchLengths","jsx","motion","d","useBranchLengthTransition"],"mappings":";;;;AAgBO,MAAMA,IAAWC,EAAK,SAAkB;AAAA,EAC7CC,gBAAAA;AAAAA,EACAC,cAAAA;AAAAA,EACAC,OAAAA;AAAAA,EACAC,aAAAA;AAAAA,EACAC,kBAAAA;AACa,GAAG;AAChB,SACE,gBAAAC,EAACC,EAAO,MAAP,EACC,QAAQJ,GACR,aAAAC,GACA,MAAK,QACL,SAAS,IACT,eAAe,SACf,gBAAgB,SAChB,SAAS;AAAA,IACPI,GAAGH,IAAmBJ,IAAiBC;AAAAA,EAAAA,GAEzC,YAAY;AAAA,IACVM,GAAGC;AAAAA,EAAAA,GACH;AAGR,CAAC;"}

package/dist/visualization.es156.js

@@ -1,40 +1,17 @@
-import p, { copy as v } from "./visualization.es713.js";
-import { initRange as c } from "./visualization.es712.js";
-import h from "./visualization.es714.js";
-import s, { tickIncrement as d } from "./visualization.es590.js";
-function k(i) {
-  var f = i.domain;
-  return i.ticks = function(n) {
-    var t = f();
-    return s(t[0], t[t.length - 1], n ?? 10);
-  }, i.tickFormat = function(n, t) {
-    var o = f();
-    return h(o[0], o[o.length - 1], n ?? 10, t);
-  }, i.nice = function(n) {
-    n == null && (n = 10);
-    var t = f(), o = 0, l = t.length - 1, e = t[o], a = t[l], u, r, m = 10;
-    for (a < e && (r = e, e = a, a = r, r = o, o = l, l = r); m-- > 0; ) {
-      if (r = d(e, a, n), r === u)
-        return t[o] = e, t[l] = a, f(t);
-      if (r > 0)
-        e = Math.floor(e / r) * r, a = Math.ceil(a / r) * r;
-      else if (r < 0)
-        e = Math.ceil(e * r) / r, a = Math.floor(a * r) / r;
-      else
-        break;
-      u = r;
-    }
-    return i;
-  }, i;
-}
-function g() {
-  var i = p();
-  return i.copy = function() {
-    return v(i, g());
-  }, c.apply(i, arguments), k(i);
-}
+import { jsx as e } from "react/jsx-runtime";
+import { useBranchLengthTransition as m } from "./visualization.es7.js";
+import { memo as s } from "react";
+import { motion as a } from "./visualization.es25.js";
+const k = s(function({
+  useBranchLengths: n,
+  color: i,
+  baseLeafLinkExtension: o,
+  scaledLeafLinkExtension: t,
+  strokeWidth: r
+}) {
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+});
 export {
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-  k as linearish
+  k as LeafLinkExtension
 };
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package/dist/visualization.es156.js.map

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-import { transformer as v, copy as F } from "./visualization.es713.js";
-import { initRange as L } from "./visualization.es712.js";
-import d from "./visualization.es590.js";
-import j from "./visualization.es716.js";
-import { format as z } from "./visualization.es717.js";
-function y(t) {
-  return Math.log(t);
-}
-function w(t) {
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-}
-function I(t) {
-  return -Math.log(-t);
-}
-function R(t) {
-  return -Math.exp(-t);
-}
-function S(t) {
-  return isFinite(t) ? +("1e" + t) : t < 0 ? 0 : t;
-}
-function q(t) {
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-}
-function A(t) {
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-}
-function x(t) {
-  return (n, m) => -t(-n, m);
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-function B(t) {
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-  function k() {
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-  }
-  return n.base = function(o) {
-    return arguments.length ? (l = +o, k()) : l;
-  }, n.domain = function(o) {
-    return arguments.length ? (m(o), k()) : m();
-  }, n.ticks = (o) => {
-    const e = m();
-    let u = e[0], f = e[e.length - 1];
-    const M = f < u;
-    M && ([u, f] = [f, u]);
-    let r = h(u), g = h(f), a, c;
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-function C() {
-  const t = B(v()).domain([1, 10]);
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-}
+import { jsx as u, jsxs as k } from "react/jsx-runtime";
+import { c as g } from "react/compiler-runtime";
+import { memo as j } from "react";
+import O from "./visualization.es24.js";
+const F = j(function(L) {
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+    color: e,
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+});
 export {
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 };
 //# sourceMappingURL=visualization.es157.js.map

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package/dist/visualization.es158.js

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-    return u[e % u.length];
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-  }, n.copy = function() {
-    return l(i, u).unknown(o);
-  }, c.apply(n, arguments), n;
-}
+import { jsx as u } from "react/jsx-runtime";
+import { c as S } from "react/compiler-runtime";
+import { getAnimationProps as T } from "./visualization.es20.js";
+import { getTrianglePoints as A } from "./visualization.es42.js";
+import { motion as W } from "./visualization.es25.js";
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+    animationGroupSize: a,
+    animationBuffer: i,
+    xScaleTransformed: n,
+    yScaleTransformed: s,
+    boundedWidth: c,
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+      if (p < 0 || p > c || d < 0 || d > l)
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-  f as implicit
+  G as default
 };
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package/dist/visualization.es159.js

@@ -1,7 +1,48 @@
-function n(t) {
-  return t?.toString();
+import { jsxs as E, jsx as b } from "react/jsx-runtime";
+import { c as $ } from "react/compiler-runtime";
+import v from "./visualization.es24.js";
+const H = (u) => {
+  const t = $(15), {
+    pointData: x,
+    xScaleTransformed: a,
+    yScaleTransformed: f,
+    boundedWidth: n,
+    boundedHeight: l,
+    margin: o
+  } = u;
+  if (!x.some(z))
+    return null;
+  const T = o.top, j = o.left;
+  let s;
+  if (t[0] !== l || t[1] !== n || t[2] !== x || t[3] !== a || t[4] !== f) {
+    let m;
+    t[6] !== l || t[7] !== n || t[8] !== a || t[9] !== f ? (m = (r, k) => {
+      if (!r.label)
+        return null;
+      const c = a(r.x), i = f(r.y);
+      if (c < 0 || c > n || i < 0 || i > l)
+        return null;
+      const p = r.label.length * 7, y = r.r ?? 3, g = Math.atan2(i - l / 2, c - n / 2);
+      let e = Math.cos(g), d = Math.sin(g);
+      const W = c + e * 15, A = e >= 0 ? W + 4 + p : W - 4 - p;
+      (A > n || A < 0) && (e = -e);
+      const M = i + d * 15;
+      (M < 0 || M > l) && (d = -d);
+      const R = c + e * 15, S = i + d * 15, w = e >= 0 ? "start" : "end";
+      return /* @__PURE__ */ E("g", { pointerEvents: "none", children: [
+        /* @__PURE__ */ b("line", { x1: c + e * y, y1: i + d * y, x2: R, y2: S, stroke: "#555", strokeWidth: 1 }),
+        /* @__PURE__ */ b("text", { x: R + (e >= 0 ? 4 : -4), y: S, textAnchor: w, dominantBaseline: "middle", fontSize: 11, fontWeight: "bold", fill: "#1c1917", children: r.label })
+      ] }, `lbl-${k}`);
+    }, t[6] = l, t[7] = n, t[8] = a, t[9] = f, t[10] = m) : m = t[10], s = x.map(m), t[0] = l, t[1] = n, t[2] = x, t[3] = a, t[4] = f, t[5] = s;
+  } else
+    s = t[5];
+  let h;
+  return t[11] !== o.left || t[12] !== o.top || t[13] !== s ? (h = /* @__PURE__ */ b(v, { top: T, left: j, children: s }), t[11] = o.left, t[12] = o.top, t[13] = s, t[14] = h) : h = t[14], h;
+};
+function z(u) {
+  return u.label;
 }
 export {
-  n as default
+  H as default
 };
 //# sourceMappingURL=visualization.es159.js.map