@weng-lab/visualization 1.3.0 → 1.3.2

package/dist/visualization.es19.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"visualization.es19.js","sources":["../src/components/BarPlot/legend.tsx"],"sourcesContent":["import React, { useRef } from \"react\";\nimport { LollipopLegendProps } from \"./types\";\nimport { getTextHeight } from \"./barplot\";\n\nconst Legend: React.FC<LollipopLegendProps> = ({\n    label,\n    getlollipopRadius,\n    height,\n    width,\n    legendValues,\n    spaceForCategory,\n    axisCenter,\n    loading\n}) => {\n    const gap = 30;\n    const labelRef = useRef<SVGTextElement>(null);\n\n    const labelWidth = getTextHeight(label, 12, \"Times\")\n\n    const itemWidths = legendValues.map(v => getlollipopRadius(v) * 2 + 12);\n    const totalItemsWidth =\n        itemWidths.reduce((sum, w) => sum + w, 0) + gap * (legendValues.length - 1);\n\n    const dividerGap = 10;\n\n    const totalWidth = labelWidth + dividerGap * 2 + totalItemsWidth;\n\n    return (\n        <div style={{ marginBottom: 10, opacity: loading ? 0.3 : 1 }}>\n            <svg height={height + 4} width={width + labelWidth + 4} id=\"legend\" transform={`translate(${spaceForCategory / 1.2 + axisCenter - width / 2}, 0)`}>\n                <rect height={height} width={width + labelWidth} stroke=\"black\" fill=\"none\" transform={`translate(2, 2)`} />\n                {loading ? (\n                    <text\n                        x={(width + labelWidth) / 2}\n                        y={height / 2}\n                        textAnchor=\"middle\"\n                        dominantBaseline=\"middle\"\n                        fontSize={12}\n                        fill=\"black\"\n                    >\n                        Loading...\n                    </text>\n                ) : (\n                    <>\n                        <g transform={`translate(${(width / 2 - totalWidth / 2) + 2}, ${(height / 2) + 2})`}>\n                            <text\n                                ref={labelRef}\n                                x={0}\n                                y={3}\n                                textAnchor=\"start\"\n                                fill=\"black\"\n                                fontSize={12}\n                            >\n                                {label}\n                            </text>\n                        </g>\n   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package/dist/visualization.es190.js

@@ -0,0 +1,11 @@
+function n(t) {
+  return t?.[0];
+}
+function e(t) {
+  return t?.[1];
+}
+export {
+  n as getFirstItem,
+  e as getSecondItem
+};
+//# sourceMappingURL=visualization.es190.js.map

package/dist/visualization.es190.js.map

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package/dist/visualization.es191.js

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+function d(n) {
+  if ("bandwidth" in n)
+    return n.bandwidth();
+  var t = n.range(), a = n.domain();
+  return Math.abs(t[t.length - 1] - t[0]) / a.length;
+}
+export {
+  d as default
+};
+//# sourceMappingURL=visualization.es191.js.map

package/dist/visualization.es191.js.map

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+{"version":3,"file":"visualization.es191.js","sources":["../../../node_modules/.pnpm/@visx+shape@3.12.0_react@19.2.4/node_modules/@visx/shape/esm/util/getBandwidth.js"],"sourcesContent":["export default function getBandwidth(scale) {\n  if ('bandwidth' in scale) {\n    return scale.bandwidth();\n  }\n  var range = scale.range();\n  var domain = scale.domain();\n  return Math.abs(range[range.length - 1] - range[0]) / domain.length;\n}"],"names":["getBandwidth","scale","range","domain"],"mappings":"AAAe,SAASA,EAAaC,GAAO;AAC1C,MAAI,eAAeA;AACjB,WAAOA,EAAM,UAAS;AAExB,MAAIC,IAAQD,EAAM,MAAK,GACnBE,IAASF,EAAM,OAAM;AACzB,SAAO,KAAK,IAAIC,EAAMA,EAAM,SAAS,CAAC,IAAIA,EAAM,CAAC,CAAC,IAAIC,EAAO;AAC/D;","x_google_ignoreList":[0]}

package/dist/visualization.es192.js

@@ -0,0 +1,7 @@
+function s(r, e) {
+  r(e);
+}
+export {
+  s as default
+};
+//# sourceMappingURL=visualization.es192.js.map

package/dist/visualization.es192.js.map

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+{"version":3,"file":"visualization.es192.js","sources":["../../../node_modules/.pnpm/@visx+shape@3.12.0_react@19.2.4/node_modules/@visx/shape/esm/util/setNumberOrNumberAccessor.js"],"sourcesContent":["/**\n * This is a workaround for TypeScript not inferring the correct\n * method overload/signature for some d3 shape methods.\n */\nexport default function setNumberOrNumberAccessor(func, value) {\n  if (typeof value === 'number') func(value);else func(value);\n}"],"names":["setNumberOrNumberAccessor","func","value"],"mappings":"AAIe,SAASA,EAA0BC,GAAMC,GAAO;AAC7D,EAA+BD,EAAKC,CAAK;AAC3C;","x_google_ignoreList":[0]}

package/dist/visualization.es193.js

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+import n from "./visualization.es201.js";
+import t from "./visualization.es202.js";
+import o from "./visualization.es203.js";
+import s from "./visualization.es204.js";
+import d from "./visualization.es205.js";
+var e = {
+  ascending: d,
+  descending: s,
+  insideout: o,
+  none: t,
+  reverse: n
+};
+function f(r) {
+  return r && e[r] || e.none;
+}
+export {
+  e as STACK_ORDERS,
+  f as default
+};
+//# sourceMappingURL=visualization.es193.js.map

package/dist/visualization.es193.js.map

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package/dist/visualization.es194.js

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+import f from "./visualization.es196.js";
+import o from "./visualization.es197.js";
+import r from "./visualization.es198.js";
+import i from "./visualization.es199.js";
+import s from "./visualization.es200.js";
+var e = {
+  expand: s,
+  diverging: i,
+  none: r,
+  silhouette: o,
+  wiggle: f
+};
+function c(t) {
+  return t && e[t] || e.none;
+}
+export {
+  e as STACK_OFFSETS,
+  c as default
+};
+//# sourceMappingURL=visualization.es194.js.map

package/dist/visualization.es194.js.map

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package/dist/visualization.es195.js

@@ -0,0 +1,34 @@
+import { slice as h } from "./visualization.es522.js";
+import a from "./visualization.es518.js";
+import v from "./visualization.es198.js";
+import d from "./visualization.es202.js";
+function z(o, u) {
+  return o[u];
+}
+function O() {
+  var o = a([]), u = d, l = v, c = z;
+  function r(n) {
+    var m = o.apply(this, arguments), t, g = n.length, s = m.length, f = new Array(s), i;
+    for (t = 0; t < s; ++t) {
+      for (var p = m[t], y = f[t] = new Array(g), e = 0, k; e < g; ++e)
+        y[e] = k = [0, +c(n[e], p, e, n)], k.data = n[e];
+      y.key = p;
+    }
+    for (t = 0, i = u(f); t < s; ++t)
+      f[i[t]].index = t;
+    return l(f, i), f;
+  }
+  return r.keys = function(n) {
+    return arguments.length ? (o = typeof n == "function" ? n : a(h.call(n)), r) : o;
+  }, r.value = function(n) {
+    return arguments.length ? (c = typeof n == "function" ? n : a(+n), r) : c;
+  }, r.order = function(n) {
+    return arguments.length ? (u = n == null ? d : typeof n == "function" ? n : a(h.call(n)), r) : u;
+  }, r.offset = function(n) {
+    return arguments.length ? (l = n ?? v, r) : l;
+  }, r;
+}
+export {
+  O as default
+};
+//# sourceMappingURL=visualization.es195.js.map

package/dist/visualization.es195.js.map

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package/dist/visualization.es196.js

@@ -0,0 +1,20 @@
+import b from "./visualization.es198.js";
+function w(t, n) {
+  if (!(!((u = t.length) > 0) || !((r = (a = t[n[0]]).length) > 0))) {
+    for (var v = 0, f = 1, a, r, u; f < r; ++f) {
+      for (var o = 0, g = 0, h = 0; o < u; ++o) {
+        for (var p = t[n[o]], l = p[f][1] || 0, x = p[f - 1][1] || 0, O = (l - x) / 2, c = 0; c < o; ++c) {
+          var m = t[n[c]], N = m[f][1] || 0, W = m[f - 1][1] || 0;
+          O += N - W;
+        }
+        g += l, h += O * l;
+      }
+      a[f - 1][1] += a[f - 1][0] = v, g && (v -= h / g);
+    }
+    a[f - 1][1] += a[f - 1][0] = v, b(t, n);
+  }
+}
+export {
+  w as default
+};
+//# sourceMappingURL=visualization.es196.js.map

package/dist/visualization.es196.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"visualization.es196.js","sources":["../../../node_modules/.pnpm/d3-shape@1.3.7/node_modules/d3-shape/src/offset/wiggle.js"],"sourcesContent":["import none from \"./none.js\";\n\nexport default function(series, order) {\n  if (!((n = series.length) > 0) || !((m = (s0 = series[order[0]]).length) > 0)) return;\n  for (var y = 0, j = 1, s0, m, n; j < m; ++j) {\n    for (var i = 0, s1 = 0, s2 = 0; i < n; ++i) {\n      var si = series[order[i]],\n          sij0 = si[j][1] || 0,\n          sij1 = si[j - 1][1] || 0,\n          s3 = (sij0 - sij1) / 2;\n      for (var k = 0; k < i; ++k) {\n        var sk = series[order[k]],\n            skj0 = sk[j][1] || 0,\n            skj1 = sk[j - 1][1] || 0;\n        s3 += skj0 - skj1;\n      }\n      s1 += sij0, s2 += s3 * sij0;\n    }\n    s0[j - 1][1] += s0[j - 1][0] = y;\n    if (s1) y -= s2 / s1;\n  }\n  s0[j - 1][1] += s0[j - 1][0] = y;\n  none(series, order);\n}\n"],"names":["stackOffsetWiggle","series","order","n","m","s0","y","j","i","s1","s2","si","sij0","sij1","s3","k","sk","skj0","skj1","none"],"mappings":";AAEe,SAAAA,EAASC,GAAQC,GAAO;AACrC,MAAI,KAAGC,IAAIF,EAAO,UAAU,MAAM,GAAGG,KAAKC,IAAKJ,EAAOC,EAAM,CAAC,CAAC,GAAG,UAAU,KAC3E;AAAA,aAASI,IAAI,GAAGC,IAAI,GAAGF,GAAID,GAAGD,GAAGI,IAAIH,GAAG,EAAEG,GAAG;AAC3C,eAASC,IAAI,GAAGC,IAAK,GAAGC,IAAK,GAAGF,IAAIL,GAAG,EAAEK,GAAG;AAK1C,iBAJIG,IAAKV,EAAOC,EAAMM,CAAC,CAAC,GACpBI,IAAOD,EAAGJ,CAAC,EAAE,CAAC,KAAK,GACnBM,IAAOF,EAAGJ,IAAI,CAAC,EAAE,CAAC,KAAK,GACvBO,KAAMF,IAAOC,KAAQ,GAChBE,IAAI,GAAGA,IAAIP,GAAG,EAAEO,GAAG;AAC1B,cAAIC,IAAKf,EAAOC,EAAMa,CAAC,CAAC,GACpBE,IAAOD,EAAGT,CAAC,EAAE,CAAC,KAAK,GACnBW,IAAOF,EAAGT,IAAI,CAAC,EAAE,CAAC,KAAK;AAC3B,UAAAO,KAAMG,IAAOC;AAAA,QACf;AACA,QAAAT,KAAMG,GAAMF,KAAMI,IAAKF;AAAA,MACzB;AACA,MAAAP,EAAGE,IAAI,CAAC,EAAE,CAAC,KAAKF,EAAGE,IAAI,CAAC,EAAE,CAAC,IAAID,GAC3BG,MAAIH,KAAKI,IAAKD;AAAA,IACpB;AACA,IAAAJ,EAAGE,IAAI,CAAC,EAAE,CAAC,KAAKF,EAAGE,IAAI,CAAC,EAAE,CAAC,IAAID,GAC/Ba,EAAKlB,GAAQC,CAAK;AAAA;AACpB;","x_google_ignoreList":[0]}

package/dist/visualization.es197.js

@@ -0,0 +1,14 @@
+import c from "./visualization.es198.js";
+function h(f, n) {
+  if ((l = f.length) > 0) {
+    for (var t = 0, o = f[n[0]], l, u = o.length; t < u; ++t) {
+      for (var a = 0, r = 0; a < l; ++a) r += f[a][t][1] || 0;
+      o[t][1] += o[t][0] = -r / 2;
+    }
+    c(f, n);
+  }
+}
+export {
+  h as default
+};
+//# sourceMappingURL=visualization.es197.js.map

package/dist/visualization.es197.js.map

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+{"version":3,"file":"visualization.es197.js","sources":["../../../node_modules/.pnpm/d3-shape@1.3.7/node_modules/d3-shape/src/offset/silhouette.js"],"sourcesContent":["import none from \"./none.js\";\n\nexport default function(series, order) {\n  if (!((n = series.length) > 0)) return;\n  for (var j = 0, s0 = series[order[0]], n, m = s0.length; j < m; ++j) {\n    for (var i = 0, y = 0; i < n; ++i) y += series[i][j][1] || 0;\n    s0[j][1] += s0[j][0] = -y / 2;\n  }\n  none(series, order);\n}\n"],"names":["stackOffsetSilhouette","series","order","n","j","s0","m","i","y","none"],"mappings":";AAEe,SAAAA,EAASC,GAAQC,GAAO;AACrC,OAAOC,IAAIF,EAAO,UAAU,GAC5B;AAAA,aAASG,IAAI,GAAGC,IAAKJ,EAAOC,EAAM,CAAC,CAAC,GAAGC,GAAGG,IAAID,EAAG,QAAQD,IAAIE,GAAG,EAAEF,GAAG;AACnE,eAASG,IAAI,GAAGC,IAAI,GAAGD,IAAIJ,GAAG,EAAEI,EAAG,CAAAC,KAAKP,EAAOM,CAAC,EAAEH,CAAC,EAAE,CAAC,KAAK;AAC3D,MAAAC,EAAGD,CAAC,EAAE,CAAC,KAAKC,EAAGD,CAAC,EAAE,CAAC,IAAI,CAACI,IAAI;AAAA,IAC9B;AACAC,IAAAA,EAAKR,GAAQC,CAAK;AAAA;AACpB;","x_google_ignoreList":[0]}

package/dist/visualization.es198.js

@@ -0,0 +1,10 @@
+function c(n, l) {
+  if ((u = n.length) > 1)
+    for (var o = 1, t, a, f = n[l[0]], u, N = f.length; o < u; ++o)
+      for (a = f, f = n[l[o]], t = 0; t < N; ++t)
+        f[t][1] += f[t][0] = isNaN(a[t][1]) ? a[t][0] : a[t][1];
+}
+export {
+  c as default
+};
+//# sourceMappingURL=visualization.es198.js.map

package/dist/visualization.es198.js.map

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+{"version":3,"file":"visualization.es198.js","sources":["../../../node_modules/.pnpm/d3-shape@1.3.7/node_modules/d3-shape/src/offset/none.js"],"sourcesContent":["export default function(series, order) {\n  if (!((n = series.length) > 1)) return;\n  for (var i = 1, j, s0, s1 = series[order[0]], n, m = s1.length; i < n; ++i) {\n    s0 = s1, s1 = series[order[i]];\n    for (j = 0; j < m; ++j) {\n      s1[j][1] += s1[j][0] = isNaN(s0[j][1]) ? s0[j][0] : s0[j][1];\n    }\n  }\n}\n"],"names":["stackOffsetNone","series","order","n","i","j","s0","s1","m"],"mappings":"AAAe,SAAAA,EAASC,GAAQC,GAAO;AACrC,OAAOC,IAAIF,EAAO,UAAU;AAC5B,aAASG,IAAI,GAAGC,GAAGC,GAAIC,IAAKN,EAAOC,EAAM,CAAC,CAAC,GAAGC,GAAGK,IAAID,EAAG,QAAQH,IAAID,GAAG,EAAEC;AAEvE,WADAE,IAAKC,GAAIA,IAAKN,EAAOC,EAAME,CAAC,CAAC,GACxBC,IAAI,GAAGA,IAAIG,GAAG,EAAEH;AACnB,QAAAE,EAAGF,CAAC,EAAE,CAAC,KAAKE,EAAGF,CAAC,EAAE,CAAC,IAAI,MAAMC,EAAGD,CAAC,EAAE,CAAC,CAAC,IAAIC,EAAGD,CAAC,EAAE,CAAC,IAAIC,EAAGD,CAAC,EAAE,CAAC;AAGjE;","x_google_ignoreList":[0]}

package/dist/visualization.es199.js

@@ -0,0 +1,10 @@
+function c(l, o) {
+  if ((r = l.length) > 0)
+    for (var e, a = 0, f, t, g, n, r, u = l[o[0]].length; a < u; ++a)
+      for (g = n = 0, e = 0; e < r; ++e)
+        (t = (f = l[o[e]][a])[1] - f[0]) > 0 ? (f[0] = g, f[1] = g += t) : t < 0 ? (f[1] = n, f[0] = n += t) : (f[0] = 0, f[1] = t);
+}
+export {
+  c as default
+};
+//# sourceMappingURL=visualization.es199.js.map

package/dist/visualization.es199.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"visualization.es199.js","sources":["../../../node_modules/.pnpm/d3-shape@1.3.7/node_modules/d3-shape/src/offset/diverging.js"],"sourcesContent":["export default function(series, order) {\n  if (!((n = series.length) > 0)) return;\n  for (var i, j = 0, d, dy, yp, yn, n, m = series[order[0]].length; j < m; ++j) {\n    for (yp = yn = 0, i = 0; i < n; ++i) {\n      if ((dy = (d = series[order[i]][j])[1] - d[0]) > 0) {\n        d[0] = yp, d[1] = yp += dy;\n      } else if (dy < 0) {\n        d[1] = yn, d[0] = yn += dy;\n      } else {\n        d[0] = 0, d[1] = dy;\n      }\n    }\n  }\n}\n"],"names":["stackOffsetDiverging","series","order","n","i","j","d","dy","yp","yn","m"],"mappings":"AAAe,SAAAA,EAASC,GAAQC,GAAO;AACrC,OAAOC,IAAIF,EAAO,UAAU;AAC5B,aAASG,GAAGC,IAAI,GAAGC,GAAGC,GAAIC,GAAIC,GAAIN,GAAGO,IAAIT,EAAOC,EAAM,CAAC,CAAC,EAAE,QAAQG,IAAIK,GAAG,EAAEL;AACzE,WAAKG,IAAKC,IAAK,GAAGL,IAAI,GAAGA,IAAID,GAAG,EAAEC;AAChC,SAAKG,KAAMD,IAAIL,EAAOC,EAAME,CAAC,CAAC,EAAEC,CAAC,GAAG,CAAC,IAAIC,EAAE,CAAC,KAAK,KAC/CA,EAAE,CAAC,IAAIE,GAAIF,EAAE,CAAC,IAAIE,KAAMD,KACfA,IAAK,KACdD,EAAE,CAAC,IAAIG,GAAIH,EAAE,CAAC,IAAIG,KAAMF,MAExBD,EAAE,CAAC,IAAI,GAAGA,EAAE,CAAC,IAAIC;AAIzB;","x_google_ignoreList":[0]}

package/dist/visualization.es2.js

@@ -0,0 +1,139 @@
+import { j as o } from "./visualization.es11.js";
+import { useState as v, useRef as q, useEffect as U, useMemo as d, useCallback as ae, useImperativeHandle as se } from "react";
+import { CircularProgress as le } from "@mui/material";
+import ie from "./visualization.es19.js";
+import { downloadSVGAsPNG as ce, downloadAsSVG as me } from "./visualization.es20.js";
+import de from "./visualization.es21.js";
+import pe from "./visualization.es22.js";
+import ue from "./visualization.es23.js";
+import he from "./visualization.es24.js";
+import fe from "./visualization.es25.js";
+import ge from "./visualization.es26.js";
+import xe from "./visualization.es27.js";
+const ye = "Roboto,Helvetica,Arial,sans-serif", be = (n, w, c) => {
+  const a = document.createElement("g");
+  a.style.position = "absolute", a.style.visibility = "hidden", a.style.fontSize = `${w}px`, a.style.fontFamily = c, a.style.whiteSpace = "nowrap", a.textContent = n, document.body.appendChild(a);
+  const M = a.getBoundingClientRect().width;
+  return document.body.removeChild(a), M + 10;
+}, De = ({
+  data: n,
+  ref: w,
+  topAxisLabel: c,
+  onBarClicked: a,
+  TooltipContents: M,
+  show95thPercentileLine: _ = !1,
+  cutoffNegativeValues: p = !1,
+  barSize: P = 15,
+  barSpacing: k = 2,
+  fill: A = !1,
+  legendTitle: J = "FDR",
+  legendValues: K = [1, 0.05, 0.01, 1e-3],
+  downloadFileName: D,
+  animation: Q,
+  animationBuffer: X
+}) => {
+  const [j, H] = v(200), [u, C] = v(!1), [T, Y] = v(!0), [E] = v(c + String(Math.random())), i = q(null), Z = q(null), {
+    parentRef: G,
+    width: s,
+    height: h
+  } = pe({
+    debounceTime: 150
+  });
+  U(() => {
+    const e = G.current;
+    if (!e) return;
+    const t = () => Y(!1);
+    return e.addEventListener("scroll", t, {
+      once: !0
+    }), () => e.removeEventListener("scroll", t);
+  }, []);
+  const B = n.map((e) => e.lollipopValue).filter((e) => e !== void 0), W = 5e-3, O = d(() => ue({
+    base: 10,
+    domain: [W, 1],
+    // Min/Max of fdr values in data
+    range: [10, 2],
+    round: !0
+  }), []), V = ae((e) => O(Math.max(W, e)), [O]), L = 50, $ = 20, R = B.length > 0 ? 30 : 0, f = Math.max(...n.map((e) => be(e.category ?? "", 12, "Arial"))), I = 10, g = d(() => Math.max(...n.map((e) => e.value)), [n]), x = d(() => Math.min(...n.map((e) => e.value)), [n]), y = -0.5, b = n.flatMap((e, t) => [e, {
+    id: `spacer-${t}`,
+    value: 0,
+    color: "transparent"
+  }]).slice(0, -1), N = n.length * P + (n.length - 1) * k, m = A ? h - L - $ - R : N, ee = d(() => he({
+    domain: b.map((e) => e.id),
+    range: [0, m],
+    paddingOuter: 0.5
+  }), [b, m]), r = d(() => fe({
+    domain: [
+      // If cutting off negative values, the lower bound is max(negativeCutoff, minValue).
+      p ? Math.min(0, Math.max(x, y)) : Math.min(0, x - 0.07 * (0 - x)),
+      // Make some room past the last tick (7% of the range of the data) if the data isnt all negative
+      Math.max(g, 0) + (g > 0 ? 0.07 * g : 0)
+    ],
+    // always include 0 as anchor if values do not cross 0
+    range: [0, Math.max(s - f - j, 0)]
+  }), [p, x, y, g, s, j]);
+  U(() => {
+    if (!s)
+      return;
+    let e = 0, t = null;
+    b.forEach((l, F) => {
+      const z = document.getElementById(`label-${F}-${E}`);
+      if (z) {
+        const ne = z.getBBox().width, oe = r(0), re = r(l.value), S = f + Math.max(oe, re) + I + ne - s;
+        e = Math.max(S, e), S < 0 && (t === null ? t = Math.abs(S) : t = Math.min(Math.abs(S), t));
+      }
+    }), e > 0 ? (C(!1), H((l) => l + 25)) : t && t > 30 ? (C(!1), H((l) => l - 25)) : C(!0);
+  }, [n, r, j, u, i, s, c, E]);
+  const te = (r.range()[0] + r.range()[1]) / 2;
+  return se(w, () => ({
+    downloadSVG: () => {
+      i.current && me(i.current, D ?? "bar_plot.svg");
+    },
+    downloadPNG: () => {
+      i.current && ce(i.current, D ?? "bar_plot.png");
+    }
+  })), // Min width of 500 to ensure that on mobile the calculated bar width is not negative
+  /* @__PURE__ */ o.jsxs("div", { ref: G, style: {
+    minWidth: "500px",
+    height: "100%",
+    overflow: "auto"
+  }, children: [
+    B.length > 0 && /* @__PURE__ */ o.jsx(ie, { values: B, label: J, getlollipopRadius: V, height: R, width: 300, legendValues: K, spaceForCategory: f, axisCenter: te, loading: !u || s < 0 }),
+    n.length === 0 ? /* @__PURE__ */ o.jsx("p", { children: "No Data To Display" }) : /* @__PURE__ */ o.jsx(
+      "svg",
+      {
+        ref: (e) => {
+          i && e && (i.current = e), Z.current = e;
+        },
+        width: s,
+        height: A ? h && h - R : m + L + $,
+        opacity: u && s > 0 ? 1 : 0.3,
+        children: /* @__PURE__ */ o.jsxs(ge, { left: f, top: L, children: [
+          /* @__PURE__ */ o.jsx(xe, { scale: r, top: 0, label: c, labelProps: {
+            dy: -5,
+            fontSize: 14,
+            fontFamily: ye
+          }, numTicks: s < 700 ? 4 : void 0, tickFormat: (e, t) => {
+            const l = typeof e == "number" ? e : e.valueOf();
+            return t === 0 && l < 0 && p && n.some((F) => F.value <= y) ? "Low Signal" : l.toString();
+          } }),
+          b.map((e, t) => /* @__PURE__ */ o.jsx(de, { bar: e, index: t, onBarClicked: a, TooltipContents: M, cutoffNegativeValues: p, negativeCutoff: y, xScale: r, yScale: ee, barSize: P, barSpacing: k, gapBetweenTextAndBar: I, getLollipopRadius: V, animation: Q, animationEnabled: T, animationBuffer: X, uniqueID: E }, e.id)),
+          /* @__PURE__ */ o.jsx(o.Fragment, { children: /* @__PURE__ */ o.jsx("line", { x1: r(0), x2: r(0), y1: 0, y2: m, stroke: "#000000" }) }),
+          _ && r.domain()[1] > 1.645 && /* @__PURE__ */ o.jsx("line", { x1: r(1.645), x2: r(1.645), y1: 0, y2: m, stroke: "black", strokeDasharray: "5 7" })
+        ] }, T ? "animating" : "static")
+      }
+    ),
+    !u && /* @__PURE__ */ o.jsx("div", { style: {
+      display: "flex",
+      position: "absolute",
+      inset: 0,
+      justifyContent: "center"
+    }, children: /* @__PURE__ */ o.jsx(le, { sx: {
+      mt: 10
+    } }) })
+  ] });
+};
+export {
+  De as default,
+  be as getTextHeight
+};
+//# sourceMappingURL=visualization.es2.js.map

package/dist/visualization.es2.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"visualization.es2.js","sources":["../src/components/BarPlot/barplot.tsx"],"sourcesContent":["import React, { useCallback, useEffect, useImperativeHandle, useMemo, useRef, useState } from 'react';\nimport { scaleBand, scaleLinear, scaleLog } from '@visx/scale';\nimport { AxisTop } from '@visx/axis';\nimport { Group } from '@visx/group';\nimport { useParentSize } from '@visx/responsive';\nimport { CircularProgress } from '@mui/material';\nimport { BarData, BarPlotProps } from './types';\nimport { NumberValue } from '@visx/vendor/d3-scale';\nimport Legend from './legend';\nimport { downloadAsSVG, downloadSVGAsPNG } from '../../utility';\nimport SingleBar from './singleBar';\n\nconst fontFamily = \"Roboto,Helvetica,Arial,sans-serif\"\n\n//helper function to get the approx length of the longest category in px\nexport const getTextHeight = (text: string, fontSize: number, fontFamily: string): number => {\n    const el = document.createElement(\"g\");\n    el.style.position = \"absolute\";\n    el.style.visibility = \"hidden\";\n    el.style.fontSize = `${fontSize}px`;\n    el.style.fontFamily = fontFamily;\n    el.style.whiteSpace = \"nowrap\";\n    el.textContent = text;\n    document.body.appendChild(el);\n    const width = el.getBoundingClientRect().width;\n    document.body.removeChild(el);\n    return width + 10;\n};\n\nconst BarPlot = <T,>({\n    data,\n    ref,\n    topAxisLabel,\n    onBarClicked,\n    TooltipContents,\n    show95thPercentileLine = false,\n    cutoffNegativeValues = false,\n    barSize = 15,\n    barSpacing = 2,\n    fill = false,\n    legendTitle = \"FDR\",\n    legendValues = [1, 0.05, 0.01, 0.001],\n    downloadFileName,\n    animation,\n    animationBuffer\n}: BarPlotProps<T>) => {\n    const [spaceForLabel, setSpaceForLabel] = useState(200)\n    const [labelSpaceDecided, setLabelSpaceDecided] = useState(false)\n    // State to control whether animation is enabled so that if scrollling too fast through a long list of bars, \n    // you dont have to wait for the animation to catch up\n    const [animationEnabled, setAnimationEnabled] = useState(true);\n    // Unique ID needed to not mix up getElementByID calls if multiple charts are in DOM\n    const [uniqueID] = useState(topAxisLabel + String(Math.random()))\n    \n    const svgRef = useRef<SVGSVGElement | null>(null);\n\n    const outerSvgRef = useRef<SVGSVGElement>(null)\n    const { parentRef, width: ParentWidth, height: ParentHeight } = useParentSize({ debounceTime: 150 });\n\n    useEffect(() => {\n        const el = parentRef.current;\n        if (!el) return;\n\n        const handleScroll = () => setAnimationEnabled(false);\n\n        el.addEventListener(\"scroll\", handleScroll, { once: true });\n\n        return () => el.removeEventListener(\"scroll\", handleScroll);\n    }, []);\n\n    const lollipopValues = data\n        .map(d => d.lollipopValue)\n        .filter((v): v is number => v !== undefined);\n\n    const rScaleAdjustment = 0.005\n\n    /**\n     * Scale for the radius of the FDR circle. Use getFDRradius instead of this directly to avoid going outside of the domain\n     */\n    const rScale = useMemo(() =>\n        scaleLog<number>({\n            base: 10,\n            domain: [rScaleAdjustment, 1], // Min/Max of fdr values in data\n            range: [10, 2],\n            round: true,\n        }),\n        []\n    )\n\n    /**\n     * \n     * @param x \n     * @returns rScale(Math.max(0.005, x)) to avoid the very large values near 0\n     */\n    const getlollipopRadius = useCallback((x: number) => rScale(Math.max(rScaleAdjustment, x)), [rScale])\n\n    // Y padding\n    const spaceForTopAxis = 50\n    const spaceOnBottom = 20\n    const legendHeight = lollipopValues.length > 0 ? 30 : 0\n\n    // X padding\n    const maxCategoryLength = Math.max(...data.map(d => getTextHeight(d.category ?? \"\", 12, \"Arial\")))\n    const spaceForCategory = maxCategoryLength\n    const gapBetweenTextAndBar = 10\n\n    const maxValue = useMemo(() => Math.max(...data.map((d) => d.value)), [data])\n    const minValue = useMemo(() => Math.min(...data.map((d) => d.value)), [data])\n    const negativeCutoff = -0.5\n\n    const bars = data.flatMap((item, index) => [\n        item,\n        {\n            id: `spacer-${index}`,\n            value: 0,\n            color: \"transparent\",\n        }\n    ]).slice(0, -1);\n\n    const dataHeight = ((data.length) * (barSize)) + ((data.length - 1) * (barSpacing))\n    const totalHeight = fill ? ParentHeight - spaceForTopAxis - spaceOnBottom - legendHeight : dataHeight\n\n    // Scales\n    const yScale = useMemo(() =>\n        scaleBand<string>({\n            domain: bars.map((d) => d.id),\n            range: [0, totalHeight],\n            paddingOuter: 0.5,\n        }), [bars, totalHeight])\n\n    const xScale = useMemo(() =>\n        scaleLinear<number>({\n            domain: [\n                // If cutting off negative values, the lower bound is max(negativeCutoff, minValue).\n                cutoffNegativeValues ? Math.min(0, Math.max(minValue, negativeCutoff)) : Math.min(0, minValue - 0.07 * (0 - minValue)),\n                // Make some room past the last tick (7% of the range of the data) if the data isnt all negative\n                 Math.max(maxValue, 0) + (maxValue > 0 ? 0.07 * maxValue : 0),\n            ], // always include 0 as anchor if values do not cross 0\n            range: [0, Math.max(ParentWidth - spaceForCategory - spaceForLabel, 0)],\n        }), [cutoffNegativeValues, minValue, negativeCutoff, maxValue, ParentWidth, spaceForLabel])\n\n    //This feels really dumb but I couldn't figure out a better way to have the labels not overflow sometimes - JF 11/8/24\n    //Whenever xScale is adjusted, it checks to see if any of the labels overflow the container, and if so\n    //it sets the spaceForLabel to be the amount overflowed.\n    useEffect(() => {\n        if (!ParentWidth) { return }\n\n        let maxOverflow = 0\n        let minUnderflow: number | null = null\n\n        bars.forEach((d, i) => {\n            const textElement = document.getElementById(`label-${i}-${uniqueID}`) as unknown as SVGSVGElement;\n\n            if (textElement) {\n                const textWidth = textElement.getBBox().width;\n\n                const barStart = xScale(0);\n                const barEnd = xScale(d.value);\n\n                const totalWidth = spaceForCategory + Math.max(barStart, barEnd) + gapBetweenTextAndBar + textWidth;\n                const overflow = totalWidth - ParentWidth\n\n                maxOverflow = Math.max(overflow, maxOverflow)\n                if (overflow < 0) {\n                    if (minUnderflow === null) {\n                        minUnderflow = Math.abs(overflow)\n                    } else {\n                        minUnderflow = Math.min(Math.abs(overflow), minUnderflow)\n                    }\n                }\n            }\n        });\n\n        if (maxOverflow > 0) { //ensure nothing is cut off\n            setLabelSpaceDecided(false)\n            setSpaceForLabel((prev) => {\n                return prev + 25\n            })\n        } else if (minUnderflow && minUnderflow > 30) { //ensure not too much space is left empty\n            setLabelSpaceDecided(false)\n            setSpaceForLabel((prev) => {\n                return prev - 25\n            })\n        } else { //If there is no overflow or underflow to handle\n            setLabelSpaceDecided(true)\n        }\n\n    }, [data, xScale, spaceForLabel, labelSpaceDecided, svgRef, ParentWidth, topAxisLabel, uniqueID]);\n\n    const axisCenter = (xScale.range()[0] + xScale.range()[1]) / 2;\n\n    //Download the plot as svg or png using the passed ref from the parent\n    useImperativeHandle(ref, () => ({\n        downloadSVG: () => {\n            if (svgRef.current) downloadAsSVG(svgRef.current, downloadFileName ?? \"bar_plot.svg\");\n        },\n        downloadPNG: () => {\n            if (svgRef.current) downloadSVGAsPNG(svgRef.current, downloadFileName ?? \"bar_plot.png\");\n        },\n    }));\n\n    return (\n        // Min width of 500 to ensure that on mobile the calculated bar width is not negative\n        <div ref={parentRef} style={{ minWidth: '500px', height: '100%', overflow: 'auto'}}>\n            {lollipopValues.length > 0 && (\n                <Legend\n                    values={lollipopValues}\n                    label={legendTitle}\n                    getlollipopRadius={getlollipopRadius}\n                    height={legendHeight}\n                    width={300}\n                    legendValues={legendValues}\n                    spaceForCategory={spaceForCategory}\n                    axisCenter={axisCenter}\n                    loading={!labelSpaceDecided || ParentWidth < 0}\n                />\n            )}\n            {data.length === 0 ?\n                <p>No Data To Display</p>\n                :\n                <svg\n                    //define fallback ref if not passed through props\n                    ref={(node) => {\n                        if (svgRef && node) {\n                            svgRef.current = node;\n                        }\n                        outerSvgRef.current = node;\n                    }}\n                    width={ParentWidth}\n                    height={fill ? ParentHeight ? ParentHeight - legendHeight : ParentHeight : totalHeight + spaceForTopAxis + spaceOnBottom}\n                    opacity={(labelSpaceDecided && ParentWidth > 0) ? 1 : 0.3}\n                >\n                    <Group left={spaceForCategory} top={spaceForTopAxis} key={animationEnabled ? \"animating\" : \"static\"}>\n                        {/* Top Axis with Label */}\n                        <AxisTop\n                            scale={xScale}\n                            top={0}\n                            label={topAxisLabel}\n                            labelProps={{ dy: -5, fontSize: 14, fontFamily }}\n                            numTicks={ParentWidth < 700 ? 4 : undefined}\n                            tickFormat={(value: NumberValue, index: number) => {\n                                const num = typeof value === 'number' ? value : value.valueOf();\n\n                                if (index === 0 && num < 0 && cutoffNegativeValues && data.some(d => d.value <= negativeCutoff)) {\n                                    return \"Low Signal\";\n                                } else {\n                                    return num.toString();\n                                }\n                            }}\n                        />\n\n                        {bars.map((d, i) => {\n\n                            return (\n                                <SingleBar\n                                    key={d.id}\n                                    bar={d}\n                                    index={i}\n                                    onBarClicked={onBarClicked as unknown as ((bar: BarData<unknown>) => void) | undefined}\n                                    TooltipContents={TooltipContents as unknown as ((bar: BarData<unknown>) => React.ReactNode) | undefined}\n                                    cutoffNegativeValues={cutoffNegativeValues}\n                                    negativeCutoff={negativeCutoff}\n                                    xScale={xScale}\n                                    yScale={yScale}\n                                    barSize={barSize}\n                                    barSpacing={barSpacing}\n                                    gapBetweenTextAndBar={gapBetweenTextAndBar}\n                                    getLollipopRadius={getlollipopRadius}\n                                    animation={animation}\n                                    animationEnabled={animationEnabled}\n                                    animationBuffer={animationBuffer}\n                                    uniqueID={uniqueID}\n                                />\n                            );\n                        })}\n                        <>\n                            <line\n                                x1={xScale(0)}\n                                x2={xScale(0)}\n                                y1={0}\n                                y2={totalHeight}\n                                stroke=\"#000000\"\n                            />\n                        </>\n                        {show95thPercentileLine && xScale.domain()[1] > 1.645 &&\n                            <line\n                                x1={xScale(1.645)}\n                                x2={xScale(1.645)}\n                                y1={0}\n                                y2={totalHeight}\n                                stroke={\"black\"}\n                                strokeDasharray={'5 7'}\n                            />\n                        }\n                    </Group>\n                </svg>\n            }\n            {/* Loading Wheel for resizing */}\n            {!labelSpaceDecided &&\n                <div style={{ display: \"flex\", position: \"absolute\", inset: 0, justifyContent: \"center\" }}>\n                    <CircularProgress sx={{ mt: 10 }} />\n                </div>\n            }\n        </div>\n    );\n};\n\nexport default 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package/dist/visualization.es20.js

@@ -0,0 +1,138 @@
+import h from "./visualization.es69.js";
+import p from "./visualization.es70.js";
+import { easeOut as w } from "./visualization.es71.js";
+function L(t, n = "scatterPlot.png", e = window.devicePixelRatio || 2) {
+  if (!t) return;
+  const a = t.getBoundingClientRect(), i = Math.ceil(Math.max(a.width, a.height));
+  p.toPng(t, {
+    width: i * e,
+    height: i * e,
+    style: {
+      transform: `scale(${e})`,
+      transformOrigin: "top left",
+      width: `${i}px`,
+      height: `${i}px`,
+      overflow: "visible"
+    }
+  }).then((o) => {
+    h(o, n, "image/png");
+  }).catch((o) => {
+    console.error("Download failed:", o);
+  });
+}
+function U(t, n = "scatterPlot.svg") {
+  t && p.toSvg(t).then((e) => {
+    h(e, n, "image/svg+xml");
+  }).catch((e) => {
+    console.error("SVG download failed:", e);
+  });
+}
+function x(t, n = "chart.svg") {
+  const a = new XMLSerializer().serializeToString(t), i = new Blob([a], {
+    type: "image/svg+xml;charset=utf-8"
+  }), o = URL.createObjectURL(i), r = document.createElement("a");
+  r.href = o, r.download = n, r.click(), URL.revokeObjectURL(o);
+}
+function S(t, n = "chart.png", e = window.devicePixelRatio || 2) {
+  const i = new XMLSerializer().serializeToString(t), o = new Blob([i], {
+    type: "image/svg+xml;charset=utf-8"
+  }), r = URL.createObjectURL(o), l = new Image();
+  l.onload = () => {
+    const s = document.createElement("canvas"), u = t.clientWidth || 800, f = t.clientHeight || 600;
+    s.width = u * e, s.height = f * e;
+    const c = s.getContext("2d");
+    c && (c.setTransform(e, 0, 0, e, 0, 0), c.imageSmoothingEnabled = !0, c.imageSmoothingQuality = "high", c.drawImage(l, 0, 0), URL.revokeObjectURL(r), s.toBlob(
+      (g) => {
+        if (!g) return;
+        const m = URL.createObjectURL(g), d = document.createElement("a");
+        d.href = m, d.download = n, d.click(), URL.revokeObjectURL(m);
+      },
+      "image/png",
+      1
+      // max quality
+    ));
+  }, l.src = r;
+}
+const b = (t, n, e = 0.03) => {
+  if (!t) return {};
+  const a = n * e, i = {
+    transition: {
+      duration: 0.4,
+      delay: a,
+      ease: w
+    }
+  };
+  switch (t) {
+    case "fade":
+      return {
+        initial: {
+          opacity: 0
+        },
+        animate: {
+          opacity: 1
+        },
+        ...i
+      };
+    case "scale":
+      return {
+        initial: {
+          opacity: 0,
+          scale: 0.8
+        },
+        animate: {
+          opacity: 1,
+          scale: 1
+        },
+        ...i
+      };
+    case "slideUp":
+      return {
+        initial: {
+          opacity: 0,
+          y: 20
+        },
+        animate: {
+          opacity: 1,
+          y: 0
+        },
+        ...i
+      };
+    case "slideRight":
+      return {
+        initial: {
+          opacity: 0,
+          x: -20
+        },
+        animate: {
+          opacity: 1,
+          x: 0
+        },
+        ...i
+      };
+    case "pop":
+      return {
+        initial: {
+          scale: 0
+        },
+        animate: {
+          scale: 1
+        },
+        transition: {
+          type: "spring",
+          stiffness: 150,
+          damping: 12,
+          delay: a
+        }
+      };
+    default:
+      return {};
+  }
+};
+export {
+  x as downloadAsSVG,
+  L as downloadDivAsPNG,
+  U as downloadDivAsSVG,
+  S as downloadSVGAsPNG,
+  b as getAnimationProps
+};
+//# sourceMappingURL=visualization.es20.js.map

package/dist/visualization.es20.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"visualization.es20.js","sources":["../src/utility.ts"],"sourcesContent":["import downloadjs from 'downloadjs';\nimport domtoimage from 'dom-to-image';\nimport { easeOut, Transition } from \"framer-motion\";\n\nexport type AnimationType = \"fade\" | \"scale\" | \"slideUp\" | \"slideRight\" | \"pop\";\n\nexport interface DownloadPlotHandle {\n  downloadSVG: () => void;\n  downloadPNG: () => void;\n}\n\n/**\n * Used to combine canvas and svg elements in scatterplot\n */\nexport function downloadDivAsPNG(\n    target: HTMLElement | null,\n    filename = \"scatterPlot.png\",\n    scale = window.devicePixelRatio || 2\n) {\n    if (!target) return;\n\n    const rect = target.getBoundingClientRect();\n    const size = Math.ceil(Math.max(rect.width, rect.height));\n\n    domtoimage\n        .toPng(target, {\n            width: size * scale,\n            height: size * scale,\n            style: {\n                transform: `scale(${scale})`,\n                transformOrigin: \"top left\",\n                width: `${size}px`,\n                height: `${size}px`,\n                overflow: \"visible\",\n            },\n        })\n        .then((dataUrl) => {\n            downloadjs(dataUrl, filename, \"image/png\");\n        })\n        .catch((error) => {\n            console.error(\"Download failed:\", error);\n        });\n}\n\n/**\n * Used to combine canvas and svg elements in scatterplot\n */\nexport function downloadDivAsSVG(\n    target: HTMLElement | null,\n    filename: string = 'scatterPlot.svg'\n) {\n    if (!target) return;\n\n    domtoimage\n        .toSvg(target)\n        .then((dataUrl) => {\n            // Convert the returned SVG data URL into a downloadable file\n            downloadjs(dataUrl, filename, 'image/svg+xml');\n        })\n        .catch((error) => {\n            console.error('SVG download failed:', error);\n        });\n}\n\n/**\n * Downloads an SVG element as an .svg file\n */\nexport function downloadAsSVG(svgElement: SVGSVGElement, fileName = \"chart.svg\") {\n    const serializer = new XMLSerializer();\n    const svgString = serializer.serializeToString(svgElement);\n\n    const blob = new Blob([svgString], { type: \"image/svg+xml;charset=utf-8\" });\n    const url = URL.createObjectURL(blob);\n\n    const link = document.createElement(\"a\");\n    link.href = url;\n    link.download = fileName;\n    link.click();\n\n    URL.revokeObjectURL(url);\n}\n\n/**\n * Converts an SVG element to PNG and downloads it\n */\nexport function downloadSVGAsPNG(svgElement: SVGSVGElement, fileName = \"chart.png\", scale = window.devicePixelRatio || 2) {\n    const serializer = new XMLSerializer();\n    const svgString = serializer.serializeToString(svgElement);\n    const svgBlob = new Blob([svgString], { type: \"image/svg+xml;charset=utf-8\" });\n    const url = URL.createObjectURL(svgBlob);\n\n    const img = new Image();\n    img.onload = () => {\n        const canvas = 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package/dist/visualization.es200.js

@@ -0,0 +1,14 @@
+import l from "./visualization.es198.js";
+function u(t, r) {
+  if ((n = t.length) > 0) {
+    for (var f, n, o = 0, c = t[0].length, a; o < c; ++o) {
+      for (a = f = 0; f < n; ++f) a += t[f][o][1] || 0;
+      if (a) for (f = 0; f < n; ++f) t[f][o][1] /= a;
+    }
+    l(t, r);
+  }
+}
+export {
+  u as default
+};
+//# sourceMappingURL=visualization.es200.js.map

package/dist/visualization.es200.js.map

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package/dist/visualization.es201.js

@@ -0,0 +1,8 @@
+import r from "./visualization.es202.js";
+function o(e) {
+  return r(e).reverse();
+}
+export {
+  o as default
+};
+//# sourceMappingURL=visualization.es201.js.map