@weng-lab/visualization 1.3.0-beta.1 → 1.3.1

package/dist/visualization.es10.js

@@ -0,0 +1,189 @@
+import { j as s } from "./visualization.es11.js";
+import { useState as G, useRef as L, useEffect as w, useCallback as V, useMemo as D } from "react";
+import gt from "./visualization.es55.js";
+import vt from "./visualization.es54.js";
+import Xt from "./visualization.es17.js";
+import M from "./visualization.es20.js";
+import xt from "./visualization.es28.js";
+import { defaultStyles as Tt } from "./visualization.es30.js";
+const St = {
+  A: "#228b22",
+  C: "blue",
+  G: "orange",
+  T: "red",
+  "-": "white"
+}, P = 50, B = 30, I = 10, y = 10, j = I + y + B + y, Et = 1, At = 50, J = 1.15, z = 5, K = (c, g, p) => Math.min(0, Math.max(p * (1 - g), c)), yt = ({
+  data: c,
+  width: g,
+  height: p,
+  getLabel: Q,
+  getOrderColor: tt,
+  getOrder: et,
+  hovered: R = [],
+  highlighted: nt = [],
+  onHoverChange: Y = () => null,
+  tooltipContents: k
+}) => {
+  const [v, ot] = G(null), [o, N] = G({
+    scaleX: 1,
+    translateX: 0
+  }), [W, _] = G(!1), X = L(o), F = L(0), U = L(0);
+  w(() => {
+    X.current = o;
+  }, [o]);
+  const x = V((t) => {
+    t !== v && (ot(t), Y(t));
+  }, [v, Y]), T = D(() => v ? [v, ...R] : R, [v, R]), {
+    tooltipData: $,
+    tooltipLeft: st,
+    tooltipTop: rt,
+    showTooltip: Z,
+    hideTooltip: C
+  } = gt(), {
+    TooltipInPortal: ct
+  } = vt({
+    scroll: !0,
+    detectBounds: !0
+  }), b = Object.keys(c).length, i = Object.values(c)[0]?.length ?? 0, r = g - j, f = p - P, H = D(() => {
+    const t = Object.keys(c).map((e) => [e, {
+      id: e,
+      label: Q(e),
+      order: et(e),
+      color: tt(e)
+    }]);
+    return new Map(t);
+  }, [c]), S = L(null);
+  w(() => {
+    const t = S.current;
+    if (!t) return;
+    const e = (n) => {
+      n.preventDefault();
+      const a = t.getBoundingClientRect(), m = n.clientX - a.left, {
+        scaleX: l,
+        translateX: h
+      } = X.current, d = n.deltaY < 0 ? J : 1 / J, u = Math.max(Et, Math.min(At, l * d)), E = m - (m - h) * (u / l), A = K(E, u, r);
+      N({
+        scaleX: u,
+        translateX: A
+      });
+    };
+    return t.addEventListener("wheel", e, {
+      passive: !1
+    }), () => t.removeEventListener("wheel", e);
+  }, [r]), w(() => {
+    const t = S.current;
+    if (!t) return;
+    const e = (n) => {
+      n.touches.length === 1 && n.preventDefault();
+    };
+    return t.addEventListener("touchstart", e, {
+      passive: !1
+    }), t.addEventListener("touchmove", e, {
+      passive: !1
+    }), () => {
+      t.removeEventListener("touchstart", e), t.removeEventListener("touchmove", e);
+    };
+  }, []), w(() => {
+    const t = S.current;
+    if (!t) return;
+    const e = t.getContext("2d");
+    if (!e) return;
+    const n = window.devicePixelRatio || 1;
+    t.width = r * n, t.height = f * n, t.style.width = `${r}px`, t.style.height = `${f}px`, e.setTransform(1, 0, 0, 1, 0, 0), e.clearRect(0, 0, t.width, t.height);
+    const a = t.width / i * o.scaleX, m = t.height / b, l = o.translateX * n;
+    e.setTransform(a, 0, 0, m, l, 0), Object.entries(c).forEach(([h, d], u) => {
+      d.forEach((E, A) => {
+        e.fillStyle = St[E], e.globalAlpha = T.length && !T.includes(h) ? 0.3 : 1, e.fillRect(A, u, 1, 1), e.globalAlpha = 1;
+      });
+    });
+  }, [c, r, f, i, b, T, o]);
+  const lt = V((t) => {
+    const {
+      scaleX: e,
+      translateX: n
+    } = X.current;
+    return Math.floor((t - n) / r * (i / e));
+  }, [r, i]), it = (t) => {
+    _(!0), F.current = t.clientX, U.current = X.current.translateX, t.currentTarget.setPointerCapture(t.pointerId);
+  }, at = (t) => {
+    const e = S.current;
+    if (!e) return;
+    if (W) {
+      const E = t.clientX - F.current, A = K(U.current + E, X.current.scaleX, r);
+      N((mt) => ({
+        ...mt,
+        translateX: A
+      }));
+      return;
+    }
+    const n = e.getBoundingClientRect(), a = t.clientX - n.left, m = t.clientY - n.top, l = lt(a), h = Math.floor(m / n.height * b), d = Object.keys(c)[h], u = c[d]?.[l];
+    l >= 0 && l < i && h >= 0 && h < b ? (x(d), Z({
+      tooltipTop: t.clientY,
+      tooltipLeft: t.clientX,
+      tooltipData: {
+        position: l,
+        basePair: u,
+        ...H.get(d)
+      }
+    })) : (x(null), C());
+  }, ht = () => {
+    _(!1);
+  }, dt = () => {
+    _(!1), x(null), C();
+  }, ut = (t, e) => {
+    x(e.id), Z({
+      tooltipLeft: t.clientX,
+      tooltipTop: t.clientY,
+      tooltipData: e
+    });
+  }, pt = (t, e) => {
+    x(null), C();
+  }, ft = D(() => Xt({
+    domain: [0, i - 1],
+    range: [o.translateX, r * o.scaleX + o.translateX]
+  }), [i, r, o]), q = D(() => [...H.values()], [H]), O = r + z;
+  return g < 10 || p < 10 ? null : /* @__PURE__ */ s.jsxs("div", { style: {
+    position: "relative",
+    width: g,
+    height: p
+  }, children: [
+    /* @__PURE__ */ s.jsxs("svg", { width: j, height: p, style: {
+      top: 0,
+      left: 0,
+      position: "absolute"
+    }, children: [
+      q.map((t, e) => {
+        const n = f / q.length;
+        return /* @__PURE__ */ s.jsxs("g", { onMouseMove: (a) => ut(a, t), onMouseLeave: (a) => pt(), opacity: T.length && !T.includes(t.id) ? 0.3 : 1, children: [
+          nt.includes(t.id) && /* @__PURE__ */ s.jsx("rect", { width: I, height: n, x: 0, y: n * e, fill: t.color, shapeRendering: "crispEdges" }),
+          /* @__PURE__ */ s.jsx("rect", { width: B, height: n, x: I + y, y: n * e, fill: t.color, shapeRendering: "crispEdges" })
+        ] }, e);
+      }),
+      /* @__PURE__ */ s.jsx(M, { angle: 270, textAnchor: "end", verticalAnchor: "middle", fontSize: 12, x: 0.5 * I, y: f + 2, children: "Highlight" }),
+      /* @__PURE__ */ s.jsx(M, { angle: 270, textAnchor: "end", verticalAnchor: "middle", fontSize: 12, x: I + y + 0.5 * B, y: f + 2, children: "Species" })
+    ] }),
+    /* @__PURE__ */ s.jsx("canvas", { ref: S, onPointerDown: it, onPointerMove: at, onPointerUp: ht, onPointerLeave: dt, style: {
+      position: "absolute",
+      left: j,
+      cursor: W ? "grabbing" : o.scaleX > 1 ? "grab" : "default"
+    } }),
+    /* @__PURE__ */ s.jsxs("svg", { width: O, height: P, style: {
+      position: "absolute",
+      //position it into the other svg by AXIS_LEFT_PADDING to fix axis cutoff of 0 at first load.
+      //can't fix with overflow visible since on zoom the axis needs to be clipped
+      left: j - z,
+      bottom: 0,
+      pointerEvents: "none",
+      overflow: "hidden"
+    }, children: [
+      /* @__PURE__ */ s.jsx(xt, { scale: ft, numTicks: Math.min(i, Math.round(10 * o.scaleX)), left: z }),
+      /* @__PURE__ */ s.jsx(M, { fontSize: 12, textAnchor: "middle", verticalAnchor: "end", x: O / 2, y: P - 4, children: "Position in cCRE  •  🟢 A  🔵 C  🟠 G  🔴 T" }),
+      /* @__PURE__ */ s.jsx(M, { fontSize: 12, textAnchor: "end", verticalAnchor: "end", x: O, y: P - 4, children: `${o.scaleX.toFixed(1)}×` })
+    ] }),
+    $ && k && /* @__PURE__ */ s.jsx(ct, { left: st, top: rt, style: Tt, children: k($) })
+  ] });
+};
+export {
+  yt as SequenceAlignmentPlot
+};
+//# sourceMappingURL=visualization.es10.js.map

package/dist/visualization.es10.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"visualization.es10.js","sources":["../src/components/SequenceAlignmentPlot/SequenceAlignmentPlot.tsx"],"sourcesContent":["import React, { useRef, useEffect, useState, useMemo, useCallback, ReactNode } from \"react\";\nimport { AxisBottom } from \"@visx/axis\";\nimport { scaleLinear } from \"@visx/scale\";\nimport { defaultStyles, useTooltip, useTooltipInPortal } from \"@visx/tooltip\";\nimport { Group } from \"@visx/group\";\nimport { Text } from \"@visx/text\";\n\nexport type Nucleotide = \"A\" | \"C\" | \"G\" | \"T\" | \"-\";\n\nconst NUCLEOTIDE_COLORS: Record<Nucleotide, string> = {\n  A: \"#228b22\",\n  C: \"blue\",\n  G: \"orange\",\n  T: \"red\",\n  \"-\": \"white\",\n};\n\nexport interface SequenceAlignmentPlotProps {\n  data: { [id: string]: Nucleotide[] };\n  getLabel: (id: string) => string;\n  getOrderColor: (id: string) => string;\n  /**\n   * the evolutionary order, not sort order. Sort in plot by sorting input data\n   */\n  getOrder: (id: string) => string;\n  width: number;\n  height: number;\n  /**\n   * Used to sync plot state with hover on PhyloTree. Plot treats these as if they are internally hovered\n   */\n  hovered?: string[];\n  /**\n   * Fired when internal hover state changes\n   */\n  onHoverChange?: (hovered: string | null) => void;\n  /**\n   * Places indicator next to species\n   */\n  highlighted?: string[];\n  /**\n   * Optionally define tooltip for hover over leaf nodes\n   */\n  tooltipContents?: (tooltipData: TooltipData) => ReactNode;\n}\n\nconst AXIS_HEIGHT = 50;\nconst SPECIES_BAR_WIDTH = 30;\nconst HIGHLIGHTED_BAR_WIDTH = 10;\nconst PADDING = 10;\nconst HIGHLIGHTED_AND_SPECIES_SVG_WIDTH = HIGHLIGHTED_BAR_WIDTH + PADDING + SPECIES_BAR_WIDTH + PADDING;\nconst MIN_SCALE = 1;\nconst MAX_SCALE = 50;\nconst ZOOM_FACTOR = 1.15;\nconst AXIS_LEFT_PADDING = 5\n\nexport type SpeciesInfo = { id: string; label: string; order: string; color: string };\n\nexport type TooltipData = SpeciesInfo & {\n  basePair?: Nucleotide;\n  position?: number;\n};\n\ninterface ZoomTransform {\n  scaleX: number;\n  translateX: number;\n}\n\n/**\n * Clamps translateX so the data never scrolls outside the canvas bounds.\n * Valid range: [canvasWidth * (1 - scaleX), 0]\n */\nconst clampTranslateX = (translateX: number, scaleX: number, canvasWidth: number): number =>\n  Math.min(0, Math.max(canvasWidth * (1 - scaleX), translateX));\n\n/**\n * @todo This component could use some cleanup and maybe manual memoization to handle hover changes to highlight more efficiently\n * Maybe try debouncing the hover changes using requestAnimationFrame like PhyloTree\n */\nexport const SequenceAlignmentPlot: React.FC<SequenceAlignmentPlotProps> = ({\n  data,\n  width: totalWidth,\n  height: totalHeight,\n  getLabel,\n  getOrderColor,\n  getOrder,\n  hovered: externalHovered = [],\n  highlighted = [],\n  onHoverChange = () => null,\n  tooltipContents,\n}) => {\n  const [internalHovered, setInternalHovered] = useState<string | null>(null);\n  const [zoomTransform, setZoomTransform] = useState<ZoomTransform>({ scaleX: 1, translateX: 0 });\n  const [isDragging, setIsDragging] = useState(false);\n\n  // Refs for event handlers that need current values without being in dependency arrays\n  const zoomTransformRef = useRef<ZoomTransform>(zoomTransform);\n  const dragStartX = useRef(0);\n  const dragStartTranslateX = useRef(0);\n\n  // Keep ref in sync so the wheel handler (attached imperatively) always sees current transform\n  useEffect(() => {\n    zoomTransformRef.current = zoomTransform;\n  }, [zoomTransform]);\n\n  const handleSetInternalHover = useCallback(\n    (newHovered: string | null) => {\n      const changed = newHovered !== internalHovered;\n      if (changed) {\n        setInternalHovered(newHovered);\n        onHoverChange(newHovered);\n      }\n    },\n    [internalHovered, onHoverChange]\n  );\n\n  const hovered = useMemo(\n    () => (internalHovered ? [internalHovered, ...externalHovered] : externalHovered),\n    [internalHovered, externalHovered]\n  );\n\n  \n  const { tooltipData, tooltipLeft, tooltipTop, showTooltip, hideTooltip } = useTooltip<TooltipData>();\n  \n  const { TooltipInPortal } = useTooltipInPortal({\n    scroll: true,\n    detectBounds: true,\n  });\n  \n  const numSpecies = Object.keys(data).length;\n  const numPositions = Object.values(data)[0]?.length ?? 0;\n  \n  const canvasWidth = totalWidth - HIGHLIGHTED_AND_SPECIES_SVG_WIDTH;\n  const canvasHeight = totalHeight - AXIS_HEIGHT;\n  \n  const speciesInfo = useMemo(() => {\n    const entries: [string, SpeciesInfo][] = Object.keys(data).map((species) => [\n      species,\n      { id: species, label: getLabel(species), order: getOrder(species), color: getOrderColor(species) },\n    ]);\n    return new Map<string, SpeciesInfo>(entries);\n  }, [data]);\n  \n  const canvasRef = useRef<HTMLCanvasElement>(null);\n\n  // Attach wheel listener imperatively with passive: false so we can call preventDefault.\n  // React 17+ attaches onWheel passively, which prevents scroll cancellation.\n  useEffect(() => {\n    const canvas = canvasRef.current;\n    if (!canvas) return;\n\n    const handleWheel = (e: WheelEvent) => {\n      e.preventDefault();\n\n      const rect = canvas.getBoundingClientRect();\n      const cursorX = e.clientX - rect.left;\n      const { scaleX, translateX } = zoomTransformRef.current;\n\n      const zoomDir = e.deltaY < 0 ? ZOOM_FACTOR : 1 / ZOOM_FACTOR;\n      const newScaleX = Math.max(MIN_SCALE, Math.min(MAX_SCALE, scaleX * zoomDir));\n\n      // Adjust translateX so the data point under the cursor stays fixed\n      const newTranslateX = cursorX - (cursorX - translateX) * (newScaleX / scaleX);\n      const clampedTranslateX = clampTranslateX(newTranslateX, newScaleX, canvasWidth);\n\n      setZoomTransform({ scaleX: newScaleX, translateX: clampedTranslateX });\n    };\n\n    canvas.addEventListener(\"wheel\", handleWheel, { passive: false });\n    return () => canvas.removeEventListener(\"wheel\", handleWheel);\n  }, [canvasWidth]);\n\n  useEffect(() => {\n    const canvas = canvasRef.current;\n    if (!canvas) return;\n\n    const preventTouchScroll = (e: TouchEvent) => {\n      if (e.touches.length === 1) e.preventDefault(); // single finger = pan, not page scroll\n    };\n\n    canvas.addEventListener(\"touchstart\", preventTouchScroll, { passive: false });\n    canvas.addEventListener(\"touchmove\", preventTouchScroll, { passive: false });\n    return () => {\n      canvas.removeEventListener(\"touchstart\", preventTouchScroll);\n      canvas.removeEventListener(\"touchmove\", preventTouchScroll);\n    };\n  }, []);\n\n  // Draw to the cancas\n  useEffect(() => {\n    const canvas = canvasRef.current;\n    if (!canvas) return;\n\n    const ctx = canvas.getContext(\"2d\");\n    if (!ctx) return;\n\n    const dpr = window.devicePixelRatio || 1;\n\n    canvas.width = canvasWidth * dpr;\n    canvas.height = canvasHeight * dpr;\n    canvas.style.width = `${canvasWidth}px`;\n    canvas.style.height = `${canvasHeight}px`;\n\n    ctx.setTransform(1, 0, 0, 1, 0, 0);\n    ctx.clearRect(0, 0, canvas.width, canvas.height);\n\n    // Combine the base data→bitmap mapping with the zoom transform.\n    // translateX is in CSS pixels so it must be scaled by dpr for the bitmap.\n    const bitmapScaleX = (canvas.width / numPositions) * zoomTransform.scaleX;\n    const bitmapScaleY = canvas.height / numSpecies;\n    const bitmapTranslateX = zoomTransform.translateX * dpr;\n\n    ctx.setTransform(bitmapScaleX, 0, 0, bitmapScaleY, bitmapTranslateX, 0);\n\n    Object.entries(data).forEach(([species, sequence], y) => {\n      sequence.forEach((nucleotide, x) => {\n        ctx.fillStyle = NUCLEOTIDE_COLORS[nucleotide];\n        ctx.globalAlpha = hovered.length && !hovered.includes(species) ? 0.3 : 1;\n        ctx.fillRect(x, y, 1, 1);\n        ctx.globalAlpha = 1;\n      });\n    });\n  }, [data, canvasWidth, canvasHeight, numPositions, numSpecies, hovered, zoomTransform]);\n\n  // Converts a CSS pixel x position on the canvas to a data-space nucleotide index,\n  // inverting the zoom transform: dataX = (cssX - translateX) / (cssWidthPerDataUnit * scaleX)\n  const cssXToPosition = useCallback(\n    (cssX: number): number => {\n      const { scaleX, translateX } = zoomTransformRef.current;\n      return Math.floor(((cssX - translateX) / canvasWidth) * (numPositions / scaleX));\n    },\n    [canvasWidth, numPositions]\n  );\n\n  const handleHeatmapPointerDown = (e: React.PointerEvent<HTMLCanvasElement>) => {\n    setIsDragging(true);\n    dragStartX.current = e.clientX;\n    dragStartTranslateX.current = zoomTransformRef.current.translateX;\n    e.currentTarget.setPointerCapture(e.pointerId)\n  };\n\n  const handleHeatmapPointerMove = (e: React.PointerEvent<HTMLCanvasElement>) => {\n    const canvas = canvasRef.current;\n    if (!canvas) return;\n\n    // While dragging: update pan, suppress hover/tooltip\n    if (isDragging) {\n      const delta = e.clientX - dragStartX.current;\n      const newTranslateX = clampTranslateX(\n        dragStartTranslateX.current + delta,\n        zoomTransformRef.current.scaleX,\n        canvasWidth\n      );\n      setZoomTransform((prev) => ({ ...prev, translateX: newTranslateX }));\n      return;\n    }\n\n    const rect = canvas.getBoundingClientRect();\n    const cssX = e.clientX - rect.left;\n    const cssY = e.clientY - rect.top;\n\n    const position = cssXToPosition(cssX);\n    const speciesIndex = Math.floor((cssY / rect.height) * numSpecies);\n    const speciesId = Object.keys(data)[speciesIndex];\n    const basePair = data[speciesId]?.[position];\n\n    if (position >= 0 && position < numPositions && speciesIndex >= 0 && speciesIndex < numSpecies) {\n      handleSetInternalHover(speciesId);\n      showTooltip({\n        tooltipTop: e.clientY,\n        tooltipLeft: e.clientX,\n        tooltipData: { position, basePair, ...(speciesInfo.get(speciesId) as SpeciesInfo) },\n      });\n    } else {\n      handleSetInternalHover(null);\n      hideTooltip();\n    }\n  };\n\n  const handleHeatmapPointerUp = () => {\n    setIsDragging(false);\n  };\n\n  const handleHeatmapPointerLeave = () => {\n    setIsDragging(false);\n    handleSetInternalHover(null);\n    hideTooltip();\n  };\n\n  const handleSpeciesBarMouseMove = (event: React.MouseEvent<SVGGElement, MouseEvent>, species: SpeciesInfo) => {\n    handleSetInternalHover(species.id);\n    showTooltip({ tooltipLeft: event.clientX, tooltipTop: event.clientY, tooltipData: species });\n  };\n\n  const handleSpeciesBarMouseLeave = (event: React.MouseEvent<SVGGElement, MouseEvent>, species: SpeciesInfo) => {\n    handleSetInternalHover(null);\n    hideTooltip();\n  };\n\n  // Apply the zoom transform to the axis scale so tick positions stay in sync with the canvas.\n  // Domain [0, numPositions-1] maps to zoomed CSS range [translateX, canvasWidth * scaleX + translateX].\n  const zoomedXScale = useMemo(\n    () =>\n      scaleLinear({\n        domain: [0, numPositions - 1],\n        range: [\n          zoomTransform.translateX,\n          canvasWidth * zoomTransform.scaleX + zoomTransform.translateX,\n        ],\n      }),\n    [numPositions, canvasWidth, zoomTransform]\n  );\n\n  const speciesList = useMemo(() => [...speciesInfo.values()], [speciesInfo]);\n\n  const axisWidth = canvasWidth + AXIS_LEFT_PADDING\n\n  return totalWidth < 10 || totalHeight < 10 ? null :(\n    <div\n      style={{\n        position: \"relative\",\n        width: totalWidth,\n        height: totalHeight,\n      }}\n    >\n      <svg\n        width={HIGHLIGHTED_AND_SPECIES_SVG_WIDTH}\n        height={totalHeight}\n        style={{ top: 0, left: 0, position: \"absolute\" }}\n      >\n        {speciesList.map((species, i) => {\n          const rectHeight = canvasHeight / speciesList.length;\n          return (\n            <g\n              key={i}\n              onMouseMove={(event) => handleSpeciesBarMouseMove(event, species)}\n              onMouseLeave={(event) => handleSpeciesBarMouseLeave(event, species)}\n              opacity={hovered.length && !hovered.includes(species.id) ? 0.3 : 1}\n            >\n              {highlighted.includes(species.id) && (\n                <rect\n                  width={HIGHLIGHTED_BAR_WIDTH}\n                  height={rectHeight}\n                  x={0}\n                  y={rectHeight * i}\n                  fill={species.color}\n                  shapeRendering={\"crispEdges\"}\n                />\n              )}\n              <rect\n                width={SPECIES_BAR_WIDTH}\n                height={rectHeight}\n                x={HIGHLIGHTED_BAR_WIDTH + PADDING}\n                y={rectHeight * i}\n                fill={species.color}\n                shapeRendering={\"crispEdges\"}\n              />\n            </g>\n          );\n        })}\n        <Text\n          angle={270}\n          textAnchor=\"end\"\n          verticalAnchor=\"middle\"\n          fontSize={12}\n          x={0.5 * HIGHLIGHTED_BAR_WIDTH}\n          y={canvasHeight + 2}\n        >\n          Highlight\n        </Text>\n        <Text\n          angle={270}\n          textAnchor=\"end\"\n          verticalAnchor=\"middle\"\n          fontSize={12}\n          x={HIGHLIGHTED_BAR_WIDTH + PADDING + 0.5 * SPECIES_BAR_WIDTH}\n          y={canvasHeight + 2}\n        >\n          Species\n        </Text>\n      </svg>\n      <canvas\n        ref={canvasRef}\n        onPointerDown={handleHeatmapPointerDown}\n        onPointerMove={handleHeatmapPointerMove}\n        onPointerUp={handleHeatmapPointerUp}\n        onPointerLeave={handleHeatmapPointerLeave}\n        style={{\n          position: \"absolute\",\n          left: HIGHLIGHTED_AND_SPECIES_SVG_WIDTH,\n          cursor: isDragging ? \"grabbing\" : zoomTransform.scaleX > 1 ? \"grab\" : \"default\",\n        }}\n      />\n      {/* overflow: hidden clips axis ticks that scroll outside the canvas bounds when zoomed */}\n      <svg\n        width={axisWidth}\n        height={AXIS_HEIGHT}\n        style={{\n          position: \"absolute\",\n          //position it into the other svg by AXIS_LEFT_PADDING to fix axis cutoff of 0 at first load.\n          //can't fix with overflow visible since on zoom the axis needs to be clipped\n          left: HIGHLIGHTED_AND_SPECIES_SVG_WIDTH - AXIS_LEFT_PADDING,\n          bottom: 0,\n          pointerEvents: \"none\",\n          overflow: \"hidden\",\n        }}\n      >\n        <AxisBottom\n          scale={zoomedXScale}\n          numTicks={Math.min(numPositions, Math.round(10 * zoomTransform.scaleX))}\n          left={AXIS_LEFT_PADDING}\n        />\n        <Text fontSize={12} textAnchor=\"middle\" verticalAnchor=\"end\" x={axisWidth / 2} y={AXIS_HEIGHT - 4}>\n          {\n            \"Position in cCRE\\u00A0\\u00A0•\\u00A0\\u00A0🟢\\u00A0A\\u00A0\\u00A0🔵\\u00A0C\\u00A0\\u00A0🟠\\u00A0G\\u00A0\\u00A0\\🔴\\u00A0T\"\n          }\n        </Text>\n        <Text fontSize={12} textAnchor=\"end\" verticalAnchor=\"end\" x={axisWidth} y={AXIS_HEIGHT - 4}>\n          {`${zoomTransform.scaleX.toFixed(1)}\\u00d7`}\n        </Text>\n      </svg>\n      {tooltipData && tooltipContents && (\n        <TooltipInPortal left={tooltipLeft} top={tooltipTop} style={defaultStyles}>\n          {tooltipContents(tooltipData)}\n        </TooltipInPortal>\n      )}\n    </div>\n  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package/dist/visualization.es100.js

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package/dist/visualization.es101.js

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package/dist/visualization.es102.js

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+var l = ["className", "innerRef"];
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+    for (var n = 1; n < arguments.length; n++) {
+      var r = arguments[n];
+      for (var t in r)
+        Object.prototype.hasOwnProperty.call(r, t) && (e[t] = r[t]);
+    }
+    return e;
+  }, s.apply(this, arguments);
+}
+function f(e, n) {
+  if (e == null) return {};
+  var r = {}, t = Object.keys(e), a, i;
+  for (i = 0; i < t.length; i++)
+    a = t[i], !(n.indexOf(a) >= 0) && (r[a] = e[a]);
+  return r;
+}
+function p(e) {
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+  return /* @__PURE__ */ c.createElement("circle", s({
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+    className: o("visx-circle", n)
+  }, t));
+}
+export {
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+};
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package/dist/visualization.es102.js.map

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package/dist/visualization.es103.js

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+import u from "./visualization.es112.js";
+import O from "react";
+import M, { defaultStyles as z } from "./visualization.es30.js";
+import { TooltipPositionProvider as K } from "./visualization.es225.js";
+import S from "./visualization.es226.js";
+var U = ["children", "getRects", "left", "offsetLeft", "offsetTop", "parentRect", "rect", "style", "top", "unstyled", "nodeRef"];
+function v() {
+  return v = Object.assign ? Object.assign.bind() : function(t) {
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package/dist/visualization.es104.js

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+import c from "./visualization.es113.js";
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+    for (var n = 1; n < arguments.length; n++) {
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+      for (var t in r)
+        Object.prototype.hasOwnProperty.call(r, t) && (e[t] = r[t]);
+    }
+    return e;
+  }, i.apply(this, arguments);
+}
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+  if (e == null) return {};
+  var r = {}, t = Object.keys(e), a, s;
+  for (s = 0; s < t.length; s++)
+    a = t[s], !(n.indexOf(a) >= 0) && (r[a] = e[a]);
+  return r;
+}
+function p(e) {
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+  return /* @__PURE__ */ o.createElement("rect", i({
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+    className: c("visx-bar", n)
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package/dist/visualization.es104.js.map

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package/dist/visualization.es105.js

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+import l from "./visualization.es241.js";
+import f from "./visualization.es242.js";
+import s from "./visualization.es243.js";
+import u from "./visualization.es244.js";
+import d from "./visualization.es245.js";
+import y from "./visualization.es246.js";
+import c from "./visualization.es247.js";
+import g from "./visualization.es248.js";
+import v from "./visualization.es249.js";
+import w from "./visualization.es250.js";
+import O from "./visualization.es251.js";
+import R from "./visualization.es252.js";
+import x from "./visualization.es253.js";
+import A from "./visualization.es254.js";
+var h = [
+  // domain => nice => zero
+  "domain",
+  "nice",
+  "zero",
+  // interpolate before round
+  "interpolate",
+  "round",
+  // set range then reverse
+  "range",
+  "reverse",
+  // Order does not matter for these operators
+  "align",
+  "base",
+  "clamp",
+  "constant",
+  "exponent",
+  "padding",
+  "unknown"
+], E = {
+  domain: l,
+  nice: v,
+  zero: A,
+  interpolate: g,
+  round: R,
+  align: s,
+  base: u,
+  clamp: d,
+  constant: y,
+  exponent: c,
+  padding: w,
+  range: f,
+  reverse: O,
+  unknown: x
+};
+function k() {
+  for (var o = arguments.length, p = new Array(o), r = 0; r < o; r++)
+    p[r] = arguments[r];
+  var t = new Set(p), m = h.filter(function(n) {
+    return t.has(n);
+  });
+  return function(a, e) {
+    return typeof e < "u" && m.forEach(function(i) {
+      E[i](a, e);
+    }), a;
+  };
+}
+export {
+  h as ALL_OPERATORS,
+  k as default
+};
+//# sourceMappingURL=visualization.es105.js.map

package/dist/visualization.es105.js.map

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package/dist/visualization.es106.js

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+import { initRange as v } from "./visualization.es601.js";
+import w from "./visualization.es602.js";
+import b from "./visualization.es71.js";
+function x() {
+  var r = w().unknown(void 0), f = r.domain, c = r.range, t = 0, e = 1, i, m, o = !1, u = 0, g = 0, l = 0.5;
+  delete r.unknown;
+  function a() {
+    var n = f().length, s = e < t, d = s ? e : t, h = s ? t : e;
+    i = (h - d) / Math.max(1, n - u + g * 2), o && (i = Math.floor(i)), d += (h - d - i * (n - u)) * l, m = i * (1 - u), o && (d = Math.round(d), m = Math.round(m));
+    var p = b(n).map(function(M) {
+      return d + i * M;
+    });
+    return c(s ? p.reverse() : p);
+  }
+  return r.domain = function(n) {
+    return arguments.length ? (f(n), a()) : f();
+  }, r.range = function(n) {
+    return arguments.length ? ([t, e] = n, t = +t, e = +e, a()) : [t, e];
+  }, r.rangeRound = function(n) {
+    return [t, e] = n, t = +t, e = +e, o = !0, a();
+  }, r.bandwidth = function() {
+    return m;
+  }, r.step = function() {
+    return i;
+  }, r.round = function(n) {
+    return arguments.length ? (o = !!n, a()) : o;
+  }, r.padding = function(n) {
+    return arguments.length ? (u = Math.min(1, g = +n), a()) : u;
+  }, r.paddingInner = function(n) {
+    return arguments.length ? (u = Math.min(1, n), a()) : u;
+  }, r.paddingOuter = function(n) {
+    return arguments.length ? (g = +n, a()) : g;
+  }, r.align = function(n) {
+    return arguments.length ? (l = Math.max(0, Math.min(1, n)), a()) : l;
+  }, r.copy = function() {
+    return x(f(), [t, e]).round(o).paddingInner(u).paddingOuter(g).align(l);
+  }, v.apply(a(), arguments);
+}
+export {
+  x as default
+};
+//# sourceMappingURL=visualization.es106.js.map

package/dist/visualization.es106.js.map

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(domain(_), rescale()) : domain();\n  };\n\n  scale.range = function(_) {\n    return arguments.length ? ([r0, r1] = _, r0 = +r0, r1 = +r1, rescale()) : [r0, r1];\n  };\n\n  scale.rangeRound = function(_) {\n    return [r0, r1] = _, r0 = +r0, r1 = +r1, round = true, rescale();\n  };\n\n  scale.bandwidth = function() {\n    return bandwidth;\n  };\n\n  scale.step = function() {\n    return step;\n  };\n\n  scale.round = function(_) {\n    return arguments.length ? (round = !!_, rescale()) : round;\n  };\n\n  scale.padding = function(_) {\n    return arguments.length ? (paddingInner = Math.min(1, paddingOuter = +_), rescale()) : paddingInner;\n  };\n\n  scale.paddingInner = function(_) {\n    return arguments.length ? (paddingInner = Math.min(1, _), rescale()) : paddingInner;\n  };\n\n  scale.paddingOuter = function(_) {\n    return arguments.length ? (paddingOuter = +_, rescale()) : paddingOuter;\n  };\n\n  scale.align = function(_) {\n    return arguments.length ? 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package/dist/visualization.es107.js

@@ -0,0 +1,40 @@
+import p, { copy as v } from "./visualization.es603.js";
+import { initRange as c } from "./visualization.es601.js";
+import h from "./visualization.es604.js";
+import s, { tickIncrement as d } from "./visualization.es599.js";
+function k(i) {
+  var f = i.domain;
+  return i.ticks = function(n) {
+    var t = f();
+    return s(t[0], t[t.length - 1], n ?? 10);
+  }, i.tickFormat = function(n, t) {
+    var o = f();
+    return h(o[0], o[o.length - 1], n ?? 10, t);
+  }, i.nice = function(n) {
+    n == null && (n = 10);
+    var t = f(), o = 0, l = t.length - 1, e = t[o], a = t[l], u, r, m = 10;
+    for (a < e && (r = e, e = a, a = r, r = o, o = l, l = r); m-- > 0; ) {
+      if (r = d(e, a, n), r === u)
+        return t[o] = e, t[l] = a, f(t);
+      if (r > 0)
+        e = Math.floor(e / r) * r, a = Math.ceil(a / r) * r;
+      else if (r < 0)
+        e = Math.ceil(e * r) / r, a = Math.floor(a * r) / r;
+      else
+        break;
+      u = r;
+    }
+    return i;
+  }, i;
+}
+function g() {
+  var i = p();
+  return i.copy = function() {
+    return v(i, g());
+  }, c.apply(i, arguments), k(i);
+}
+export {
+  g as default,
+  k as linearish
+};
+//# sourceMappingURL=visualization.es107.js.map

package/dist/visualization.es107.js.map

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+{"version":3,"file":"visualization.es107.js","sources":["../../../node_modules/.pnpm/d3-scale@4.0.2/node_modules/d3-scale/src/linear.js"],"sourcesContent":["import {ticks, tickIncrement} from \"d3-array\";\nimport continuous, {copy} from \"./continuous.js\";\nimport {initRange} from \"./init.js\";\nimport tickFormat from \"./tickFormat.js\";\n\nexport function linearish(scale) {\n  var domain = scale.domain;\n\n  scale.ticks = function(count) {\n    var d = domain();\n    return ticks(d[0], d[d.length - 1], count == null ? 10 : count);\n  };\n\n  scale.tickFormat = function(count, specifier) {\n    var d = domain();\n    return tickFormat(d[0], d[d.length - 1], count == null ? 10 : count, specifier);\n  };\n\n  scale.nice = function(count) {\n    if (count == null) count = 10;\n\n    var d = domain();\n    var i0 = 0;\n    var i1 = d.length - 1;\n    var start = d[i0];\n    var stop = d[i1];\n    var prestep;\n    var step;\n    var maxIter = 10;\n\n    if (stop < start) {\n      step = start, start = stop, stop = step;\n      step = i0, i0 = i1, i1 = step;\n    }\n    \n    while (maxIter-- > 0) {\n      step = tickIncrement(start, stop, count);\n      if (step === prestep) {\n        d[i0] = start\n        d[i1] = stop\n        return domain(d);\n      } else if (step > 0) {\n        start = Math.floor(start / step) * step;\n        stop = Math.ceil(stop / step) * step;\n      } else if (step < 0) {\n        start = Math.ceil(start * step) / step;\n        stop = Math.floor(stop * step) / step;\n      } else {\n        break;\n      }\n      prestep = step;\n    }\n\n    return scale;\n  };\n\n  return scale;\n}\n\nexport default function linear() {\n  var scale = continuous();\n\n  scale.copy = function() {\n    return copy(scale, linear());\n  };\n\n  initRange.apply(scale, arguments);\n\n  return linearish(scale);\n}\n"],"names":["linearish","scale","domain","count","d","ticks","specifier","tickFormat","i0","i1","start","stop","prestep","step","maxIter","tickIncrement","linear","continuous","copy","initRange"],"mappings":";;;;AAKO,SAASA,EAAUC,GAAO;AAC/B,MAAIC,IAASD,EAAM;AAEnB,SAAAA,EAAM,QAAQ,SAASE,GAAO;AAC5B,QAAIC,IAAIF,EAAM;AACd,WAAOG,EAAMD,EAAE,CAAC,GAAGA,EAAEA,EAAE,SAAS,CAAC,GAAGD,KAAgB,EAAU;AAAA,EAChE,GAEAF,EAAM,aAAa,SAASE,GAAOG,GAAW;AAC5C,QAAIF,IAAIF,EAAM;AACd,WAAOK,EAAWH,EAAE,CAAC,GAAGA,EAAEA,EAAE,SAAS,CAAC,GAAGD,KAAgB,IAAYG,CAAS;AAAA,EAChF,GAEAL,EAAM,OAAO,SAASE,GAAO;AAC3B,IAAIA,KAAS,SAAMA,IAAQ;AAE3B,QAAIC,IAAIF,EAAM,GACVM,IAAK,GACLC,IAAKL,EAAE,SAAS,GAChBM,IAAQN,EAAEI,CAAE,GACZG,IAAOP,EAAEK,CAAE,GACXG,GACAC,GACAC,IAAU;AAOd,SALIH,IAAOD,MACTG,IAAOH,GAAOA,IAAQC,GAAMA,IAAOE,GACnCA,IAAOL,GAAIA,IAAKC,GAAIA,IAAKI,IAGpBC,MAAY,KAAG;AAEpB,UADAD,IAAOE,EAAcL,GAAOC,GAAMR,CAAK,GACnCU,MAASD;AACX,eAAAR,EAAEI,CAAE,IAAIE,GACRN,EAAEK,CAAE,IAAIE,GACDT,EAAOE,CAAC;AACV,UAAIS,IAAO;AAChB,QAAAH,IAAQ,KAAK,MAAMA,IAAQG,CAAI,IAAIA,GACnCF,IAAO,KAAK,KAAKA,IAAOE,CAAI,IAAIA;AAAA,eACvBA,IAAO;AAChB,QAAAH,IAAQ,KAAK,KAAKA,IAAQG,CAAI,IAAIA,GAClCF,IAAO,KAAK,MAAMA,IAAOE,CAAI,IAAIA;AAAA;AAEjC;AAEF,MAAAD,IAAUC;AAAA,IACZ;AAEA,WAAOZ;AAAA,EACT,GAEOA;AACT;AAEe,SAASe,IAAS;AAC/B,MAAIf,IAAQgB,EAAU;AAEtB,SAAAhB,EAAM,OAAO,WAAW;AACtB,WAAOiB,EAAKjB,GAAOe,GAAQ;AAAA,EAC7B,GAEAG,EAAU,MAAMlB,GAAO,SAAS,GAEzBD,EAAUC,CAAK;AACxB;","x_google_ignoreList":[0]}