@weng-lab/ui-components 3.0.1-beta.1 → 3.0.1-beta.2

package/dist/ui-components.es52.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es52.js","sources":["../../../node_modules/.pnpm/@mui+material@7.3.9_@emotion+react@11.14.0_@types+react@19.2.14_react@19.2.4__@emotion+_5efc65b7a21bb615fd4ee8d4bf58b896/node_modules/@mui/material/esm/IconButton/IconButton.js"],"sourcesContent":["'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { unstable_useId as useId } from \"../utils/index.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport ButtonBase from \"../ButtonBase/index.js\";\nimport CircularProgress from \"../CircularProgress/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport iconButtonClasses, { getIconButtonUtilityClass } from \"./iconButtonClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n  const {\n    classes,\n    disabled,\n    color,\n    edge,\n    size,\n    loading\n  } = ownerState;\n  const slots = {\n    root: ['root', loading && 'loading', disabled && 'disabled', color !== 'default' && `color${capitalize(color)}`, edge && `edge${capitalize(edge)}`, `size${capitalize(size)}`],\n    loadingIndicator: ['loadingIndicator'],\n    loadingWrapper: ['loadingWrapper']\n  };\n  return composeClasses(slots, getIconButtonUtilityClass, classes);\n};\nconst IconButtonRoot = styled(ButtonBase, {\n  name: 'MuiIconButton',\n  slot: 'Root',\n  overridesResolver: (props, styles) => {\n    const {\n      ownerState\n    } = props;\n    return [styles.root, ownerState.loading && styles.loading, ownerState.color !== 'default' && styles[`color${capitalize(ownerState.color)}`], ownerState.edge && styles[`edge${capitalize(ownerState.edge)}`], styles[`size${capitalize(ownerState.size)}`]];\n  }\n})(memoTheme(({\n  theme\n}) => ({\n  textAlign: 'center',\n  flex: '0 0 auto',\n  fontSize: theme.typography.pxToRem(24),\n  padding: 8,\n  borderRadius: '50%',\n  color: (theme.vars || theme).palette.action.active,\n  transition: theme.transitions.create('background-color', {\n    duration: theme.transitions.duration.shortest\n  }),\n  variants: [{\n    props: props => !props.disableRipple,\n    style: {\n      '--IconButton-hoverBg': theme.alpha((theme.vars || theme).palette.action.active, (theme.vars || theme).palette.action.hoverOpacity),\n      '&:hover': {\n        backgroundColor: 'var(--IconButton-hoverBg)',\n        // Reset on touch devices, it doesn't add specificity\n        '@media (hover: none)': {\n          backgroundColor: 'transparent'\n        }\n      }\n    }\n  }, {\n    props: {\n      edge: 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{\n      '--IconButton-hoverBg': theme.alpha((theme.vars || theme).palette[color].main, (theme.vars || theme).palette.action.hoverOpacity)\n    }\n  })), {\n    props: {\n      size: 'small'\n    },\n    style: {\n      padding: 5,\n      fontSize: theme.typography.pxToRem(18)\n    }\n  }, {\n    props: {\n      size: 'large'\n    },\n    style: {\n      padding: 12,\n      fontSize: theme.typography.pxToRem(28)\n    }\n  }],\n  [`&.${iconButtonClasses.disabled}`]: {\n    backgroundColor: 'transparent',\n    color: (theme.vars || theme).palette.action.disabled\n  },\n  [`&.${iconButtonClasses.loading}`]: {\n    color: 'transparent'\n  }\n})));\nconst IconButtonLoadingIndicator = styled('span', {\n  name: 'MuiIconButton',\n  slot: 'LoadingIndicator'\n})(({\n  theme\n}) => ({\n  display: 'none',\n  position: 'absolute',\n  visibility: 'visible',\n  top: '50%',\n  left: '50%',\n  transform: 'translate(-50%, -50%)',\n  color: (theme.vars || theme).palette.action.disabled,\n  variants: [{\n 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loading,\n    loadingIndicator,\n    size\n  };\n  const classes = useUtilityClasses(ownerState);\n  return /*#__PURE__*/_jsxs(IconButtonRoot, {\n    id: loading ? loadingId : idProp,\n    className: clsx(classes.root, className),\n    centerRipple: true,\n    focusRipple: !disableFocusRipple,\n    disabled: disabled || loading,\n    ref: ref,\n    ...other,\n    ownerState: ownerState,\n    children: [typeof loading === 'boolean' &&\n    /*#__PURE__*/\n    // use plain HTML span to minimize the runtime overhead\n    _jsx(\"span\", {\n      className: classes.loadingWrapper,\n      style: {\n        display: 'contents'\n      },\n      children: /*#__PURE__*/_jsx(IconButtonLoadingIndicator, {\n        className: classes.loadingIndicator,\n        ownerState: ownerState,\n        children: loading && loadingIndicator\n      })\n    }), children]\n  });\n});\nprocess.env.NODE_ENV !== \"production\" ? IconButton.propTypes /* remove-proptypes */ = {\n  // ┌────────────────────────────── Warning ──────────────────────────────┐\n  // │ These PropTypes are generated from the TypeScript type definitions. │\n  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │\n  // └─────────────────────────────────────────────────────────────────────┘\n  /**\n   * The icon to display.\n   */\n  children: chainPropTypes(PropTypes.node, props => {\n    const found = React.Children.toArray(props.children).some(child => /*#__PURE__*/React.isValidElement(child) && child.props.onClick);\n    if (found) {\n      return new Error(['MUI: You are providing an onClick event listener to a child of a button element.', 'Prefer applying it to the IconButton directly.', 'This guarantees that the whole <button> will be responsive to click events.'].join('\\n'));\n    }\n    return null;\n  }),\n  /**\n   * Override or extend the styles applied to the component.\n   */\n  classes: PropTypes.object,\n  /**\n   * @ignore\n   */\n  className: PropTypes.string,\n  /**\n   * The color of the component.\n   * It supports both default and custom theme colors, which can be added as shown in the\n   * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n   * @default 'default'\n   */\n  color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['inherit', 'default', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n  /**\n   * If `true`, the component is disabled.\n   * @default false\n   */\n  disabled: PropTypes.bool,\n  /**\n   * If `true`, the  keyboard focus ripple is disabled.\n   * @default false\n   */\n  disableFocusRipple: PropTypes.bool,\n  /**\n   * If `true`, the ripple effect is disabled.\n   *\n   * ⚠️ Without a ripple there is no styling for :focus-visible by default. 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+{"version":3,"file":"ui-components.es52.js","sources":["../src/components/GenomeSearch/utils.ts"],"sourcesContent":["import { CCREResponse, GeneResponse, ICREResponse, LegacyCcreResponse, Result, ResultType, SnpResponse, StudyResponse } from \"./types\";\n\n/**\n * Get the coordinates from a string input.\n * @param input - The input string to search for coordinates\n * @param assembly - The assembly to search for coordinates\n * @returns An array of results with the coordinates\n */\nexport function getCoordinates(input: string, assembly: string): Result[] {\n  const results: Result[] = [];\n  input = input.replace(/,/g, \"\");\n\n  let chromosome: string, start: number, end: number;\n\n  if (input.includes(\":\") && input.includes(\"-\")) {\n    chromosome = input.split(\":\")[0];\n    start = parseInt(input.split(\":\")[1].split(\"-\")[0]) || 0;\n    end = parseInt(input.split(\":\")[1].split(\"-\")[1]) || start + 1000;\n  } else if (input.includes(\"\\t\")) {\n    const [chr, startStr, endStr] = input.split(\"\\t\");\n    chromosome = chr;\n    start = parseInt(startStr);\n    end = parseInt(endStr);\n  } else {\n    return results;\n  }\n\n  // Normalize chromosome name to use capital X and Y\n  const normalizedChromosome = chromosome.replace(/chrx$/, \"chrX\").replace(/chry$/, \"chrY\");\n\n  const chrLength = chromosomeLengths[assembly][normalizedChromosome];\n  if (end > start && chrLength && end <= chrLength) {\n    results.push({\n      title: `${normalizedChromosome}:${start.toLocaleString()}-${end.toLocaleString()}`,\n      domain: {\n        chromosome: normalizedChromosome,\n        start: start,\n        end: end,\n      },\n      description: `${normalizedChromosome}:${start.toLocaleString()}-${end.toLocaleString()}`,\n      type: \"Coordinate\",\n    });\n  }\n\n  return results;\n}\n\n// Common interface for result formatting options\ninterface ResultFormatterOptions<T> {\n  getTitle: (result: T) => string;\n  getDescription: (result: T) => string;\n  type: string;\n}\n\n// Generic formatter function\nfunction formatResults<T extends { coordinates: { chromosome: string; start: number; end: number } }>(\n  results: T[] | null,\n  limit: number,\n  options: ResultFormatterOptions<T>\n): Result[] {\n  if (!results) {\n    return [];\n  }\n  return results.slice(0, limit).map((result) => ({\n    title: options.getTitle(result),\n    description: options.getDescription(result),\n    domain: {\n      chromosome: result.coordinates.chromosome,\n      start: result.coordinates.start,\n      end: result.coordinates.end,\n    },\n    type: options.type as ResultType,\n  }));\n}\n\n// Specific formatters using the generic function\nexport function snpResultList(results: SnpResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.id,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`,\n    type: \"SNP\",\n  });\n}\n\nexport function geneResultList(results: GeneResponse[], limit: number, showVersions: boolean): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.name,\n    getDescription: (result) => {\n      let idStr = \"\";\n      result.versions.forEach(\n        (x, i) => (idStr += \"V\" + x.version + \" \" + x.id + (i === result.versions.length - 1 ? \"\" : \"\\n\"))\n      );\n      return `${result.description}\\n${idStr}\\n${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`;\n    },\n    type: \"Gene\",\n  });\n}\n\nexport function studyResultList(results: StudyResponse[], limit: number): Result[] {\n  return results.slice(0, limit).map((result) => ({\n    title: result.disease_trait,\n    description: `${result.author.replace(\"_\", \" \")} (${result.studyid.split(\"-\")[1]})\\n${result.parent_terms.join(\",\")}\\n ${result.has_enrichment_info ? \"Biosample Enrichment\" : \"\"}`,\n    domain: undefined,\n    id: result.studyid,\n    type: \"Study\",\n  }));\n}\n\nexport function omeResultsList(results: OmeOption[]): Result[] {\n  return results.map((ome) => ({\n    title: ome.label,\n    description: ome.description ?? \"\",\n    domain: undefined,\n    id: ome.value,\n    type: \"Ome\",\n  }));\n}\n\nexport function icreResultList(results: ICREResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.accession,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`,\n    type: \"iCRE\",\n  });\n}\n\nexport function ccreResultList(results: CCREResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.accession,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${\n        result.coordinates.end\n      }${result.isiCRE ? \", iCRE\" : \"\"}`,\n    type: \"cCRE\",\n  });\n}\n\nexport function legacyCcreResultList(results: LegacyCcreResponse[], limit: number): Result[] {\n  return results\n    .filter((result) => result.input !== result.v4_match_or_intersecting) //filter v4 cCREs\n    .slice(0, limit)\n    .map((result) => {\n      const region = result.input_region;\n      const overlapping = result.v4_match_or_intersecting\n      return {\n        title: result.input,\n        // !!! Do not change this format without also modifying SCREEN's /search page. This specific formatting is relied upon\n        // At most two overlapping v4 cCREs are ever returned, so a single (non-global) comma replace is sufficient for the \"a, b\" rendering.\n        description: `(Registry ${result.input_latest_previous_version})\\n${result.input_region}\\n${overlapping ? `Intersects v4 cCRE${overlapping.includes(\",\") ? \"s\" : \"\"}: ${overlapping.replace(\",\", \", \")}` : \"No intersecting v4 cCREs\"}`,\n        domain: {\n          chromosome: region.split(\":\")[0],\n          start: parseInt(region.split(\":\")[1].split(\"-\")[0]),\n          end: parseInt(region.split(\":\")[1].split(\"-\")[1]),\n        },\n        type: \"Legacy cCRE\",\n      };\n    });\n}\n\nexport interface OmeOption {\n  label: string;\n  value: string;\n  keywords?: string[];\n  description?: string;\n}\n//allows the user to search more freely and get the result they are looking for\n//will look at label as well as keywords\nexport const OmesList: OmeOption[] = [\n  {\n    label: \"Proteomics\",\n    value: \"proteomics\",\n    keywords: [\"protein\", \"mass spec\"],\n  },\n  {\n    label: \"WGS\",\n    value: \"WGS\",\n    keywords: [\"whole genome sequencing\", \"genome sequencing\", \"genomics\"],\n    description: \"Whole Genome Sequencing\"\n  },\n  {\n    label: \"WGBS\",\n    value: \"WGBS\",\n    keywords: [\"whole genome bisulfite sequencing\", \"epigenomics\", \"methylation\"],\n    description: \"Whole Genome Bisulfite Sequencing\"\n  },\n  {\n    label: \"ATAC\",\n    value: \"ATAC\",\n    keywords: [\"chromatin accessibility\", \"atac-seq\"],\n    description: \"ATAC-seq\"\n  },\n  {\n    label: \"RNA\",\n    value: \"RNA\",\n    keywords: [\"rna-seq\", \"transcriptomics\", \"gene expression\"],\n    description: \"RNA-seq\"\n  },\n  {\n    label: \"Metabolomics\",\n    value: \"metabolomics\",\n  },\n  {\n    label: \"Lipidomics\",\n    value: \"lipidomics\",\n  },\n  {\n    label: \"Metallomics\",\n    value: \"metallomics\",\n  },\n  {\n  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package/dist/ui-components.es53.js

@@ -1,124 +1,253 @@
-import * as d from "react";
-import o from "./ui-components.es89.js";
-import { clsx as f } from "./ui-components.es92.js";
-import u from "./ui-components.es93.js";
-import { getToolbarUtilityClass as g } from "./ui-components.es158.js";
-import { j as b } from "./ui-components.es15.js";
-import { useDefaultProps as v } from "./ui-components.es96.js";
-import T from "./ui-components.es97.js";
-import y from "./ui-components.es50.js";
-const x = (s) => {
-  const {
-    classes: t,
-    disableGutters: r,
-    variant: e
-  } = s;
-  return T({
-    root: ["root", !r && "gutters", e]
-  }, g, t);
-}, R = y("div", {
-  name: "MuiToolbar",
-  slot: "Root",
-  overridesResolver: (s, t) => {
-    const {
-      ownerState: r
-    } = s;
-    return [t.root, !r.disableGutters && t.gutters, t[r.variant]];
+const y = `
+  query suggestions($assembly: String!, $snpid: String!, $limit: Int) {
+    snpAutocompleteQuery(assembly: $assembly, snpid: $snpid, limit: $limit) {
+      id
+      coordinates {
+        chromosome
+        start
+        end
+      }
+    }
+  }
+`, u = `
+  query Genes(
+      $name_prefix: [String!]
+      $idprefix: [String!]
+      $limit: Int
+      $assembly: String!
+      $version: Int
+      $includealiassearch: Boolean
+  ) {
+      gene(
+          name_prefix: $name_prefix
+          idprefix: $idprefix
+          limit: $limit
+          assembly: $assembly
+          orderby: "name"
+          version: $version
+          includealiassearch: $includealiassearch
+      ) {
+          id
+          name
+          description
+          coordinates {
+              chromosome
+              start
+              end
+          }
+          alias    
+      }
   }
-})(u(({
-  theme: s
-}) => ({
-  position: "relative",
-  display: "flex",
-  alignItems: "center",
-  variants: [{
-    props: ({
-      ownerState: t
-    }) => !t.disableGutters,
-    style: {
-      paddingLeft: s.spacing(2),
-      paddingRight: s.spacing(2),
-      [s.breakpoints.up("sm")]: {
-        paddingLeft: s.spacing(3),
-        paddingRight: s.spacing(3)
+`, _ = `
+  query iCREQuery($accession_prefix: [String!], $limit: Int) {
+      iCREQuery(accession_prefix: $accession_prefix, limit: $limit) {
+          rdhs
+          accession
+          celltypes
+          coordinates {
+              start
+              end
+              chromosome
+          }
       }
+  }
+`, h = `
+  query cCREAutocompleteQuery(
+    $accession: [String!]
+    $accession_prefix: [String!]
+    $assembly: String!
+    $includeiCREs: Boolean
+    $limit: Int
+  ) {
+    cCREAutocompleteQuery(
+      includeiCREs: $includeiCREs
+      assembly: $assembly
+      limit: $limit
+      accession: $accession
+      accession_prefix: $accession_prefix
+    ) {
+      accession
+      isiCRE
+      coordinates {
+        chromosome
+        start
+        end
+      }
+    }
+  }
+`, C = `
+  query getv2v3CcreMapping($accessions: [String], $assembly: String!) {
+    ccreMappings: getv2cCREMappings(
+      v2_accession: $accessions
+      assembly: $assembly
+    ) {
+      input: v2_accession
+      input_latest_previous_version: ccre_version
+      input_region: v2_region
+      v4_match_or_intersecting: v4_accession
+      v4_region
     }
-  }, {
-    props: {
-      variant: "dense"
+  }
+`, $ = `
+query getGWASStudyMetadata($limit: Int, $studyname_prefix: [String]){
+    getGWASStudiesMetadata(limit: $limit, studyname_prefix: $studyname_prefix )
+    {
+        studyid
+        author
+        disease_trait
+        has_enrichment_info
+        population
+        parent_terms
+        total_ld_blocks
+        ld_blocks_overlapping_ccres
+        overlapping_ccres
+    }
+}
+`, b = async (e, s, i, t) => (await fetch(i, {
+  method: "POST",
+  body: JSON.stringify({
+    query: _,
+    variables: {
+      accession_prefix: [e],
+      limit: s
+    }
+  }),
+  headers: {
+    "Content-Type": "application/json"
+  },
+  signal: t
+})).json(), v = async (e, s, i, t, o, p) => {
+  const r = e.length === 12;
+  return (await fetch(o, {
+    method: "POST",
+    body: JSON.stringify({
+      query: h,
+      variables: {
+        ...r ? {
+          accession: [e.toUpperCase()]
+        } : {
+          accession_prefix: [e]
+        },
+        assembly: s,
+        limit: i,
+        includeiCREs: t
+      }
+    }),
+    headers: {
+      "Content-Type": "application/json"
     },
-    style: {
-      minHeight: 48
+    signal: p
+  })).json();
+}, R = async (e, s, i, t) => (await fetch(i, {
+  method: "POST",
+  body: JSON.stringify({
+    query: C,
+    variables: {
+      accessions: [e],
+      assembly: s
     }
-  }, {
-    props: {
-      variant: "regular"
+  }),
+  headers: {
+    "Content-Type": "application/json"
+  },
+  signal: t
+})).json(), x = async (e, s, i, t, o, p) => {
+  let r = t ? typeof t == "number" ? [t] : t : [s === "GRCh38" ? 40 : 25];
+  r = r.sort((n, a) => a - n);
+  const m = await Promise.all(r.map((n) => fetch(o, {
+    method: "POST",
+    body: JSON.stringify({
+      query: u,
+      variables: {
+        assembly: s.toLowerCase(),
+        ...s.toLowerCase() === "mm10" && e.toUpperCase().startsWith("ENSMUSG") || s.toLowerCase() === "grch38" && e.toUpperCase().startsWith("ENSG") ? {
+          idprefix: e.split(".")[0]
+        } : {
+          name_prefix: e
+        },
+        version: n,
+        limit: i,
+        includealiassearch: !0
+      }
+    }),
+    headers: {
+      "Content-Type": "application/json"
     },
-    style: s.mixins.toolbar
-  }]
-}))), j = /* @__PURE__ */ d.forwardRef(function(t, r) {
-  const e = v({
-    props: t,
-    name: "MuiToolbar"
-  }), {
-    className: a,
-    component: n = "div",
-    disableGutters: p = !1,
-    variant: l = "regular",
-    ...c
-  } = e, i = {
-    ...e,
-    component: n,
-    disableGutters: p,
-    variant: l
-  }, m = x(i);
-  return /* @__PURE__ */ b.jsx(R, {
-    as: n,
-    className: f(m.root, a),
-    ref: r,
-    ownerState: i,
-    ...c
-  });
-});
-process.env.NODE_ENV !== "production" && (j.propTypes = {
-  // ┌────────────────────────────── Warning ──────────────────────────────┐
-  // │ These PropTypes are generated from the TypeScript type definitions. │
-  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │
-  // └─────────────────────────────────────────────────────────────────────┘
-  /**
-   * The Toolbar children, usually a mixture of `IconButton`, `Button` and `Typography`.
-   * The Toolbar is a flex container, allowing flex item properties to be used to lay out the children.
-   */
-  children: o.node,
-  /**
-   * Override or extend the styles applied to the component.
-   */
-  classes: o.object,
-  /**
-   * @ignore
-   */
-  className: o.string,
-  /**
-   * The component used for the root node.
-   * Either a string to use a HTML element or a component.
-   */
-  component: o.elementType,
-  /**
-   * If `true`, disables gutter padding.
-   * @default false
-   */
-  disableGutters: o.bool,
-  /**
-   * The system prop that allows defining system overrides as well as additional CSS styles.
-   */
-  sx: o.oneOfType([o.arrayOf(o.oneOfType([o.func, o.object, o.bool])), o.func, o.object]),
-  /**
-   * The variant to use.
-   * @default 'regular'
-   */
-  variant: o.oneOfType([o.oneOf(["dense", "regular"]), o.string])
-});
+    signal: p
+  }).then((a) => a.json()))), l = /* @__PURE__ */ new Map();
+  return m.forEach((n, a) => {
+    (n.data.gene || []).forEach((c) => {
+      l.has(c.name) ? l.get(c.name).versions.push({
+        id: c.id,
+        version: r[a]
+      }) : l.set(c.name, {
+        gene: c,
+        versions: [{
+          id: c.id,
+          version: r[a]
+        }]
+      });
+    });
+  }), await Promise.all(Array.from(l.values()).map(async ({
+    gene: n,
+    versions: a
+  }) => {
+    const d = await g(n.name);
+    return {
+      ...n,
+      description: `${f(n.description || n.name || d)} ${n.alias ? `(${n.alias})` : ""}`,
+      versions: a
+    };
+  }));
+}, f = (e) => e.split(" ").map((s) => s.charAt(0).toUpperCase() + s.slice(1)).join(" ");
+async function g(e) {
+  try {
+    const i = await (await fetch("https://clinicaltables.nlm.nih.gov/api/ncbi_genes/v3/search?authenticity_token=&terms=" + e.toUpperCase())).json(), t = i[3] && i[3].filter((o) => o[3] === e.toUpperCase());
+    return t && t.length >= 1 ? t[0][4] : null;
+  } catch {
+    return null;
+  }
+}
+const T = async (e, s, i, t, o) => (await fetch(t, {
+  method: "POST",
+  body: JSON.stringify({
+    query: y,
+    variables: {
+      assembly: s.toLowerCase(),
+      snpid: e,
+      limit: i
+    }
+  }),
+  headers: {
+    "Content-Type": "application/json"
+  },
+  signal: o
+})).json(), O = async (e, s, i, t) => (await fetch(i, {
+  method: "POST",
+  body: JSON.stringify({
+    query: $,
+    variables: {
+      studyname_prefix: [e],
+      limit: s
+    }
+  }),
+  headers: {
+    "Content-Type": "application/json"
+  },
+  signal: t
+})).json();
 export {
-  j as default
+  h as CCRE_AUTOCOMPLETE_QUERY,
+  u as GENE_AUTOCOMPLETE_QUERY,
+  $ as GWAS_AUTOCOMPLETE_QUERY,
+  _ as ICRE_AUTOCOMPLETE_QUERY,
+  C as LEGACY_CCRE_QUERY,
+  y as SNP_AUTOCOMPLETE_QUERY,
+  v as getCCREs,
+  x as getGenes,
+  b as getICREs,
+  R as getLegacyCCREs,
+  T as getSNPs,
+  O as getStudys
 };
 //# sourceMappingURL=ui-components.es53.js.map

package/dist/ui-components.es53.js.map

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+{"version":3,"file":"ui-components.es53.js","sources":["../src/components/GenomeSearch/queries.ts"],"sourcesContent":["import { GenomeSearchProps } from \"./types\";\n\nexport const SNP_AUTOCOMPLETE_QUERY = `\n  query suggestions($assembly: String!, $snpid: String!, $limit: Int) {\n    snpAutocompleteQuery(assembly: $assembly, snpid: $snpid, limit: $limit) {\n      id\n      coordinates {\n        chromosome\n        start\n        end\n      }\n    }\n  }\n`;\n\nexport const GENE_AUTOCOMPLETE_QUERY = `\n  query Genes(\n      $name_prefix: [String!]\n      $idprefix: [String!]\n      $limit: Int\n      $assembly: String!\n      $version: Int\n      $includealiassearch: Boolean\n  ) {\n      gene(\n          name_prefix: $name_prefix\n          idprefix: $idprefix\n          limit: $limit\n          assembly: $assembly\n          orderby: \"name\"\n          version: $version\n          includealiassearch: $includealiassearch\n      ) {\n          id\n          name\n          description\n          coordinates {\n              chromosome\n              start\n              end\n          }\n          alias    \n      }\n  }\n`;\n\nexport const ICRE_AUTOCOMPLETE_QUERY = `\n  query iCREQuery($accession_prefix: [String!], $limit: Int) {\n      iCREQuery(accession_prefix: $accession_prefix, limit: $limit) {\n          rdhs\n          accession\n          celltypes\n          coordinates {\n              start\n              end\n              chromosome\n          }\n      }\n  }\n`;\n\nexport const CCRE_AUTOCOMPLETE_QUERY = `\n  query cCREAutocompleteQuery(\n    $accession: [String!]\n    $accession_prefix: [String!]\n    $assembly: String!\n    $includeiCREs: Boolean\n    $limit: Int\n  ) {\n    cCREAutocompleteQuery(\n      includeiCREs: $includeiCREs\n      assembly: $assembly\n      limit: $limit\n      accession: $accession\n      accession_prefix: $accession_prefix\n    ) {\n      accession\n      isiCRE\n      coordinates {\n        chromosome\n        start\n        end\n      }\n    }\n  }\n`;\n\nexport const LEGACY_CCRE_QUERY = `\n  query getv2v3CcreMapping($accessions: [String], $assembly: String!) {\n    ccreMappings: getv2cCREMappings(\n      v2_accession: $accessions\n      assembly: $assembly\n    ) {\n      input: v2_accession\n      input_latest_previous_version: ccre_version\n      input_region: v2_region\n      v4_match_or_intersecting: v4_accession\n      v4_region\n    }\n  }\n`\n\nexport const GWAS_AUTOCOMPLETE_QUERY = `\nquery getGWASStudyMetadata($limit: Int, $studyname_prefix: [String]){\n    getGWASStudiesMetadata(limit: $limit, studyname_prefix: $studyname_prefix )\n    {\n        studyid\n        author\n        disease_trait\n        has_enrichment_info\n        population\n        parent_terms\n        total_ld_blocks\n        ld_blocks_overlapping_ccres\n        overlapping_ccres\n    }\n}\n`;\n\nexport const getICREs = async (value: string, limit: number, url: string, signal?: AbortSignal) => {\n  const response = await fetch(url, {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: ICRE_AUTOCOMPLETE_QUERY,\n      variables: {\n        accession_prefix: [value],\n        limit: limit,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getCCREs = async (value: string, assembly: GenomeSearchProps[\"assembly\"], limit: number, showiCREFlag: boolean, url: string, signal?: AbortSignal) => {\n  const isExactAccession = value.length === 12;\n  const response = await fetch(url, {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: CCRE_AUTOCOMPLETE_QUERY,\n      variables: {\n        ...(isExactAccession\n          ? { accession: [value.toUpperCase()] }\n          : { accession_prefix: [value] }),\n        assembly,\n        limit,\n        includeiCREs: showiCREFlag,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getLegacyCCREs = async (value: string, assembly: GenomeSearchProps[\"assembly\"], url: string, signal?: AbortSignal) => {\n  const response = await fetch(url, {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: LEGACY_CCRE_QUERY,\n      variables: {\n        accessions: [value],\n        assembly,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getGenes = async (\n  value: string,\n  assembly: GenomeSearchProps[\"assembly\"],\n  limit: number,\n  geneVersions: GenomeSearchProps[\"geneVersion\"],\n  url: string,\n  signal?: AbortSignal\n) => {\n  let versions = geneVersions\n    ? typeof geneVersions === \"number\"\n      ? [geneVersions]\n      : geneVersions\n    : [assembly === \"GRCh38\" ? 40 : 25];\n\n  // sort versions from high to low (prioritize newest versions in map)\n  versions = versions.sort((a, b) => b - a);\n\n  // Fetch genes for all versions\n  const versionResults = await Promise.all(\n  versions.map((version) =>\n    fetch(url, {\n      method: \"POST\",\n      body: JSON.stringify({\n        query: GENE_AUTOCOMPLETE_QUERY,\n        variables: {\n          assembly: assembly.toLowerCase(),\n          ...(\n            (\n              (assembly.toLowerCase() === \"mm10\" && value.toUpperCase().startsWith(\"ENSMUSG\")) ||\n              (assembly.toLowerCase() === \"grch38\" && value.toUpperCase().startsWith(\"ENSG\"))\n            )\n              ? { idprefix: value.split(\".\")[0] }\n              : { name_prefix: value }\n          ),\n          version: version,\n          limit: limit,\n          includealiassearch: true\n        },\n      }),\n      headers: { \"Content-Type\": \"application/json\" },\n      signal,\n    }).then((res) => res.json())\n  )\n);\n\n  // Combine and deduplicate results\n  const geneMap = new Map<string, { gene: any; versions: { id: string; version: number }[] }>();\n\n  versionResults.forEach((result, idx) => {\n    const genes = result.data.gene || [];\n    genes.forEach((gene: any) => {\n      if (!geneMap.has(gene.name)) {\n        geneMap.set(gene.name, { gene, versions: [{ id: gene.id, version: versions[idx] }] });\n      } else {\n        // if gene already exists, just add legacy versions to list.\n        const existing = geneMap.get(gene.name)!;\n        existing.versions.push({ id: gene.id, version: versions[idx] });\n      }\n    });\n  });\n\n  // Convert map to array and fetch descriptions\n  const out = await Promise.all(\n    Array.from(geneMap.values()).map(async ({ gene, versions }) => {\n      const description =  await getDescription(gene.name);\n      return {\n        ...gene,\n        description: `${toTitleCase(gene.description || gene.name || description)} ${gene.alias ? `(${gene.alias})` : ''}`,\n        versions,\n      };\n    })\n  );\n\n  return out;\n};\nconst toTitleCase = (str: string) =>\n  str\n    .split(\" \")\n    .map((word) => word.charAt(0).toUpperCase() + word.slice(1))\n    .join(\" \");\n\nasync function getDescription(name: string): Promise<string | null> {\n  try {\n    const response = await fetch(\n      \"https://clinicaltables.nlm.nih.gov/api/ncbi_genes/v3/search?authenticity_token=&terms=\" + name.toUpperCase()\n    );\n    const data = await response.json();\n    const matches = data[3] && data[3].filter((x: string[]) => x[3] === name.toUpperCase());\n    return matches && matches.length >= 1 ? matches[0][4] : null;\n  } catch {\n    return null;\n  }\n}\n\nexport const getSNPs = async (value: string, assembly: GenomeSearchProps[\"assembly\"], limit: number, url: string, signal?: AbortSignal) => {\n  const response = await fetch(url, {\n    method: 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