@weng-lab/ui-components 3.0.0-beta.0 → 3.0.1-beta.0

package/dist/ui-components.es55.js

@@ -1,133 +1,212 @@
-import { j as e } from "./ui-components.es15.js";
-import * as h from "react";
-import { Toolbar as F, ColumnsPanelTrigger as E, ToolbarButton as a, FilterPanelTrigger as k, ExportPrint as w, ExportCsv as T, ExportExcel as O, QuickFilterTrigger as P, QuickFilterControl as R, QuickFilterClear as A, QuickFilter as D } from "@mui/x-data-grid-premium";
-import M from "./ui-components.es79.js";
-import Q from "./ui-components.es80.js";
-import B from "./ui-components.es81.js";
-import b from "./ui-components.es82.js";
-import u from "./ui-components.es22.js";
-import { InfoOutline as N } from "@mui/icons-material";
-import V from "./ui-components.es25.js";
-import s from "./ui-components.es26.js";
-import j from "./ui-components.es83.js";
-import L from "./ui-components.es84.js";
-import W from "./ui-components.es85.js";
-import d from "./ui-components.es86.js";
-import g from "./ui-components.es87.js";
-import m from "./ui-components.es34.js";
-import X from "./ui-components.es48.js";
-const q = m(D)({
-  display: "grid",
-  alignItems: "center"
-}), G = m(a)(({
-  theme: r,
-  ownerState: t
-}) => ({
-  gridArea: "1 / 1",
-  width: "min-content",
-  height: "min-content",
-  zIndex: 1,
-  opacity: t.expanded ? 0 : 1,
-  pointerEvents: t.expanded ? "none" : "auto",
-  transition: r.transitions.create(["opacity"])
-})), H = m(X)(({
-  theme: r,
-  ownerState: t
-}) => ({
-  gridArea: "1 / 1",
-  overflowX: "clip",
-  width: t.expanded ? 260 : "var(--trigger-width)",
-  opacity: t.expanded ? 1 : 0,
-  transition: r.transitions.create(["width", "opacity"])
-}));
-function pe({
-  label: r,
-  labelTooltip: t,
-  extra: p,
-  style: C,
-  iconColor: y,
-  ...S
-}) {
-  const [c, o] = h.useState(!1), x = h.useRef(null), l = y ?? "inherit", {
-    printOptions: v,
-    csvOptions: I,
-    excelOptions: z,
-    ...J
-  } = S;
-  return /* @__PURE__ */ e.jsxs(F, { style: C, children: [
-    typeof r != "string" && r,
-    /* @__PURE__ */ e.jsxs(V, { fontWeight: "medium", sx: {
-      flex: 1,
-      mx: 0.5,
-      display: "flex",
-      alignItems: "center",
-      gap: 1
-    }, children: [
-      typeof r == "string" && r,
-      t && (typeof t == "string" || typeof t == "number") ? /* @__PURE__ */ e.jsx(s, { title: t, children: /* @__PURE__ */ e.jsx(N, { fontSize: "inherit", color: "primary" }) }) : t
-    ] }),
-    p && /* @__PURE__ */ e.jsxs(e.Fragment, { children: [
-      p,
-      /* @__PURE__ */ e.jsx(j, { orientation: "vertical", variant: "middle", flexItem: !0, sx: {
-        mx: 0.5
-      } })
-    ] }),
-    /* @__PURE__ */ e.jsx(s, { title: "Columns", children: /* @__PURE__ */ e.jsx(E, { render: /* @__PURE__ */ e.jsx(a, {}), children: /* @__PURE__ */ e.jsx(M, { fontSize: "small", htmlColor: l }) }) }),
-    /* @__PURE__ */ e.jsx(s, { title: "Filters", children: /* @__PURE__ */ e.jsx(k, { render: (n, i) => /* @__PURE__ */ e.jsx(a, { ...n, color: "default", children: /* @__PURE__ */ e.jsx(L, { badgeContent: i.filterCount, color: "primary", variant: "dot", children: /* @__PURE__ */ e.jsx(Q, { fontSize: "small", htmlColor: l }) }) }) }) }),
-    /* @__PURE__ */ e.jsx(j, { orientation: "vertical", variant: "middle", flexItem: !0, sx: {
-      mx: 0.5
-    } }),
-    /* @__PURE__ */ e.jsx(s, { title: "Export", children: /* @__PURE__ */ e.jsx(a, { ref: x, id: "export-menu-trigger", "aria-controls": "export-menu", "aria-haspopup": "true", "aria-expanded": c ? "true" : void 0, onClick: () => o(!0), children: /* @__PURE__ */ e.jsx(B, { fontSize: "small", htmlColor: l }) }) }),
-    /* @__PURE__ */ e.jsxs(W, { id: "export-menu", anchorEl: x.current, open: c, onClose: () => o(!1), anchorOrigin: {
-      vertical: "bottom",
-      horizontal: "right"
-    }, transformOrigin: {
-      vertical: "top",
-      horizontal: "right"
-    }, slotProps: {
-      list: {
-        "aria-labelledby": "export-menu-trigger"
-      }
-    }, children: [
-      /* @__PURE__ */ e.jsx(w, { options: v, render: /* @__PURE__ */ e.jsx(d, {}), onClick: () => o(!1), children: "Print" }),
-      /* @__PURE__ */ e.jsx(T, { options: {
-        ...typeof r == "string" ? {
-          fileName: r
-        } : {},
-        ...I
-      }, render: /* @__PURE__ */ e.jsx(d, {}), onClick: () => o(!1), children: "Download as CSV" }),
-      /* @__PURE__ */ e.jsx(O, { options: {
-        ...typeof r == "string" ? {
-          fileName: r
-        } : {},
-        ...z
-      }, render: /* @__PURE__ */ e.jsx(d, {}), onClick: () => o(!1), children: "Download as Excel" })
-    ] }),
-    /* @__PURE__ */ e.jsxs(q, { children: [
-      /* @__PURE__ */ e.jsx(P, { render: (n, i) => /* @__PURE__ */ e.jsx(s, { title: "Search", enterDelay: 0, children: /* @__PURE__ */ e.jsx(G, { ...n, ownerState: {
-        expanded: i.expanded
-      }, color: "default", "aria-disabled": i.expanded, children: /* @__PURE__ */ e.jsx(u, { fontSize: "small", htmlColor: l }) }) }) }),
-      /* @__PURE__ */ e.jsx(R, { render: ({
-        ref: n,
-        ...i
-      }, f) => /* @__PURE__ */ e.jsx(H, { ...i, ownerState: {
-        expanded: f.expanded
-      }, inputRef: n, "aria-label": "Search", placeholder: "Search...", size: "small", slotProps: {
-        input: {
-          startAdornment: /* @__PURE__ */ e.jsx(g, { position: "start", children: /* @__PURE__ */ e.jsx(u, { fontSize: "small" }) }),
-          endAdornment: f.value ? /* @__PURE__ */ e.jsx(g, { position: "end", children: /* @__PURE__ */ e.jsx(A, { edge: "end", size: "small", "aria-label": "Clear search", material: {
-            sx: {
-              marginRight: -0.75
-            }
-          }, children: /* @__PURE__ */ e.jsx(b, { fontSize: "small" }) }) }) : null,
-          ...i.slotProps?.input
-        },
-        ...i.slotProps
-      } }) })
-    ] })
-  ] });
+function p(t, c) {
+  const e = [];
+  t = t.replace(/,/g, "");
+  let i, o, r;
+  if (t.includes(":") && t.includes("-"))
+    i = t.split(":")[0], o = parseInt(t.split(":")[1].split("-")[0]) || 0, r = parseInt(t.split(":")[1].split("-")[1]) || o + 1e3;
+  else if (t.includes("	")) {
+    const [h, l, d] = t.split("	");
+    i = h, o = parseInt(l), r = parseInt(d);
+  } else
+    return e;
+  const s = i.replace(/chrx$/, "chrX").replace(/chry$/, "chrY"), a = m[c][s];
+  return r > o && a && r <= a && e.push({
+    title: `${s}:${o.toLocaleString()}-${r.toLocaleString()}`,
+    domain: {
+      chromosome: s,
+      start: o,
+      end: r
+    },
+    description: `${s}:${o.toLocaleString()}-${r.toLocaleString()}`,
+    type: "Coordinate"
+  }), e;
+}
+function n(t, c, e) {
+  return t ? t.slice(0, c).map((i) => ({
+    title: e.getTitle(i),
+    description: e.getDescription(i),
+    domain: {
+      chromosome: i.coordinates.chromosome,
+      start: i.coordinates.start,
+      end: i.coordinates.end
+    },
+    type: e.type
+  })) : [];
+}
+function g(t, c) {
+  return n(t, c, {
+    getTitle: (e) => e.id,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}`,
+    type: "SNP"
+  });
+}
+function $(t, c, e) {
+  return n(t, c, {
+    getTitle: (i) => i.name,
+    getDescription: (i) => {
+      let o = "";
+      return i.versions.forEach((r, s) => o += "V" + r.version + " " + r.id + (s === i.versions.length - 1 ? "" : `
+`)), `${i.description}
+${o}
+${i.coordinates.chromosome}:${i.coordinates.start}-${i.coordinates.end}`;
+    },
+    type: "Gene"
+  });
+}
+function u(t, c) {
+  return t.slice(0, c).map((e) => ({
+    title: e.disease_trait,
+    description: `${e.author.replace("_", " ")} (${e.studyid.split("-")[1]})
+${e.parent_terms.join(",")}
+ ${e.has_enrichment_info ? "Biosample Enrichment" : ""}`,
+    domain: void 0,
+    id: e.studyid,
+    type: "Study"
+  }));
+}
+function y(t) {
+  return t.map((c) => ({
+    title: c.label,
+    description: c.description ?? "",
+    domain: void 0,
+    id: c.value,
+    type: "Ome"
+  }));
+}
+function v(t, c) {
+  return n(t, c, {
+    getTitle: (e) => e.accession,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}`,
+    type: "iCRE"
+  });
+}
+function f(t, c) {
+  return n(t, c, {
+    getTitle: (e) => e.accession,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}${e.isiCRE ? ", iCRE" : ""}`,
+    type: "cCRE"
+  });
+}
+function R(t, c) {
+  return t.filter((e) => e.input !== e.v4_match_or_intersecting).slice(0, c).map((e) => {
+    const i = e.input_region, o = e.v4_match_or_intersecting;
+    return {
+      title: e.input,
+      // !!! Do not change this format without also modifying SCREEN's /search page. This specific formatting is relied upon
+      // At most two overlapping v4 cCREs are ever returned, so a single (non-global) comma replace is sufficient for the "a, b" rendering.
+      description: `(Registry ${e.input_latest_previous_version})
+${e.input_region}
+${o ? `Intersects v4 cCRE${o.includes(",") ? "s" : ""}: ${o.replace(",", ", ")}` : "No intersecting v4 cCREs"}`,
+      domain: {
+        chromosome: i.split(":")[0],
+        start: parseInt(i.split(":")[1].split("-")[0]),
+        end: parseInt(i.split(":")[1].split("-")[1])
+      },
+      type: "Legacy cCRE"
+    };
+  });
+}
+const b = [{
+  label: "Proteomics",
+  value: "proteomics",
+  keywords: ["protein", "mass spec"]
+}, {
+  label: "WGS",
+  value: "WGS",
+  keywords: ["whole genome sequencing", "genome sequencing", "genomics"],
+  description: "Whole Genome Sequencing"
+}, {
+  label: "WGBS",
+  value: "WGBS",
+  keywords: ["whole genome bisulfite sequencing", "epigenomics", "methylation"],
+  description: "Whole Genome Bisulfite Sequencing"
+}, {
+  label: "ATAC",
+  value: "ATAC",
+  keywords: ["chromatin accessibility", "atac-seq"],
+  description: "ATAC-seq"
+}, {
+  label: "RNA",
+  value: "RNA",
+  keywords: ["rna-seq", "transcriptomics", "gene expression"],
+  description: "RNA-seq"
+}, {
+  label: "Metabolomics",
+  value: "metabolomics"
+}, {
+  label: "Lipidomics",
+  value: "lipidomics"
+}, {
+  label: "Metallomics",
+  value: "metallomics"
+}, {
+  label: "Exposomics",
+  value: "exposomics"
+}], m = {
+  GRCh38: {
+    chr1: 248956422,
+    chr2: 242193529,
+    chr3: 198295559,
+    chr4: 190214555,
+    chr5: 181538259,
+    chr6: 170805979,
+    chr7: 159345973,
+    chr8: 145138636,
+    chr9: 138394717,
+    chr10: 133797422,
+    chr11: 135086622,
+    chr12: 133275309,
+    chr13: 114364328,
+    chr14: 107043718,
+    chr15: 101991189,
+    chr16: 90338345,
+    chr17: 83257441,
+    chr18: 80373285,
+    chr19: 58617616,
+    chr20: 64444167,
+    chr21: 46709983,
+    chr22: 50818468,
+    chrX: 156040895,
+    chrY: 57227415
+  },
+  mm10: {
+    chr1: 195471971,
+    chr2: 182113224,
+    chr3: 160039680,
+    chr4: 156508116,
+    chr5: 151834684,
+    chr6: 149736546,
+    chr7: 145441459,
+    chr8: 129401213,
+    chr9: 124595110,
+    chr10: 130694993,
+    chr11: 122082543,
+    chr12: 120129022,
+    chr13: 120421639,
+    chr14: 124902244,
+    chr15: 104043685,
+    chr16: 98207768,
+    chr17: 94987271,
+    chr18: 90702639,
+    chr19: 61431566,
+    chrX: 171031299,
+    chrY: 91744698
+  }
+};
+function C(t) {
+  const c = t.includes("	"), e = t.includes("-"), i = t.length >= 4 && /^[0-9xyXY]$/.test(t[3]);
+  return (c || e) && t.startsWith("chr") && i;
 }
 export {
-  pe as CustomToolbar
+  b as OmesList,
+  f as ccreResultList,
+  $ as geneResultList,
+  p as getCoordinates,
+  v as icreResultList,
+  C as isDomain,
+  R as legacyCcreResultList,
+  y as omeResultsList,
+  g as snpResultList,
+  u as studyResultList
 };
 //# sourceMappingURL=ui-components.es55.js.map

package/dist/ui-components.es55.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es55.js","sources":["../src/components/Table/CustomToolbar.tsx"],"sourcesContent":["import * as React from \"react\";\nimport { styled } from \"@mui/material/styles\";\nimport {\n  Toolbar,\n  ToolbarButton,\n  ColumnsPanelTrigger,\n  FilterPanelTrigger,\n  ExportCsv,\n  ExportPrint,\n  QuickFilter,\n  QuickFilterControl,\n  QuickFilterClear,\n  QuickFilterTrigger,\n  GridToolbarProps,\n  ToolbarPropsOverrides,\n  ExportExcel,\n} from \"@mui/x-data-grid-premium\";\nimport Tooltip from \"@mui/material/Tooltip\";\nimport Menu from \"@mui/material/Menu\";\nimport Badge from \"@mui/material/Badge\";\nimport ViewColumnIcon from \"@mui/icons-material/ViewColumn\";\nimport FilterListIcon from \"@mui/icons-material/FilterList\";\nimport FileDownloadIcon from \"@mui/icons-material/FileDownload\";\nimport MenuItem from \"@mui/material/MenuItem\";\nimport Divider from \"@mui/material/Divider\";\nimport TextField from \"@mui/material/TextField\";\nimport InputAdornment from \"@mui/material/InputAdornment\";\nimport CancelIcon from \"@mui/icons-material/Cancel\";\nimport SearchIcon from \"@mui/icons-material/Search\";\nimport Typography from \"@mui/material/Typography\";\nimport \"./types\";\nimport { InfoOutline } from \"@mui/icons-material\";\n\ntype OwnerState = {\n  expanded: boolean;\n};\n\nconst StyledQuickFilter = styled(QuickFilter)({\n  display: \"grid\",\n  alignItems: \"center\",\n});\n\nconst StyledToolbarButton = styled(ToolbarButton)<{ ownerState: OwnerState }>(({ theme, ownerState }) => ({\n  gridArea: \"1 / 1\",\n  width: \"min-content\",\n  height: \"min-content\",\n  zIndex: 1,\n  opacity: ownerState.expanded ? 0 : 1,\n  pointerEvents: ownerState.expanded ? \"none\" : \"auto\",\n  transition: theme.transitions.create([\"opacity\"]),\n}));\n\nconst StyledTextField = styled(TextField)<{\n  ownerState: OwnerState;\n}>(({ theme, ownerState }) => ({\n  gridArea: \"1 / 1\",\n  overflowX: \"clip\",\n  width: ownerState.expanded ? 260 : \"var(--trigger-width)\",\n  opacity: ownerState.expanded ? 1 : 0,\n  transition: theme.transitions.create([\"width\", \"opacity\"]),\n}));\n\ntype CustomToolbarProps = GridToolbarProps & ToolbarPropsOverrides;\n\nexport function CustomToolbar({\n  label,\n  labelTooltip,\n  extra,\n  style,\n  iconColor: iconColorProp,\n  ...toolbarProps\n}: CustomToolbarProps) {\n  const [exportMenuOpen, setExportMenuOpen] = React.useState(false);\n  const exportMenuTriggerRef = React.useRef<HTMLButtonElement>(null);\n\n  const iconColor = iconColorProp ?? \"inherit\";\n\n  const {printOptions, csvOptions, excelOptions, ...restToolbarProps} = toolbarProps\n\n  return (\n    <Toolbar style={style}>\n      {typeof label !== \"string\" && label}\n      <Typography fontWeight=\"medium\" sx={{ flex: 1, mx: 0.5, display: \"flex\", alignItems: \"center\", gap: 1 }}>\n        {typeof label === \"string\" && label}\n        {/* ReactNode can be more than just an element, string, or number but not accounting for that for simplicity */}\n        {labelTooltip && (typeof labelTooltip === \"string\" || typeof labelTooltip === \"number\") ? (\n          <Tooltip title={labelTooltip}>\n            <InfoOutline fontSize=\"inherit\" color=\"primary\" />\n          </Tooltip>\n        ) : (\n          labelTooltip\n        )}\n      </Typography>\n      {extra && (\n        <>\n          {extra}\n          <Divider orientation=\"vertical\" variant=\"middle\" flexItem sx={{ mx: 0.5 }} />\n        </>\n      )}\n\n      <Tooltip title=\"Columns\">\n        <ColumnsPanelTrigger render={<ToolbarButton />}>\n          <ViewColumnIcon fontSize=\"small\" htmlColor={iconColor} />\n        </ColumnsPanelTrigger>\n      </Tooltip>\n\n      <Tooltip title=\"Filters\">\n        <FilterPanelTrigger\n          render={(props, state) => (\n            <ToolbarButton {...props} color=\"default\">\n              <Badge badgeContent={state.filterCount} color=\"primary\" variant=\"dot\">\n                <FilterListIcon fontSize=\"small\" htmlColor={iconColor} />\n              </Badge>\n            </ToolbarButton>\n          )}\n        />\n      </Tooltip>\n      <Divider orientation=\"vertical\" variant=\"middle\" flexItem sx={{ mx: 0.5 }} />\n      <Tooltip title=\"Export\">\n        <ToolbarButton\n          ref={exportMenuTriggerRef}\n          id=\"export-menu-trigger\"\n          aria-controls=\"export-menu\"\n          aria-haspopup=\"true\"\n          aria-expanded={exportMenuOpen ? \"true\" : undefined}\n          onClick={() => setExportMenuOpen(true)}\n        >\n          <FileDownloadIcon fontSize=\"small\" htmlColor={iconColor} />\n        </ToolbarButton>\n      </Tooltip>\n\n      <Menu\n        id=\"export-menu\"\n        anchorEl={exportMenuTriggerRef.current}\n        open={exportMenuOpen}\n        onClose={() => setExportMenuOpen(false)}\n        anchorOrigin={{ vertical: \"bottom\", horizontal: \"right\" }}\n        transformOrigin={{ vertical: \"top\", horizontal: \"right\" }}\n        slotProps={{\n          list: {\n            \"aria-labelledby\": \"export-menu-trigger\",\n          },\n        }}\n      >\n        <ExportPrint options={printOptions} render={<MenuItem />} onClick={() => setExportMenuOpen(false)}>\n          Print\n        </ExportPrint>\n        <ExportCsv\n          options={{\n            ...(typeof label === \"string\" ? { fileName: label } : {}),\n            ...csvOptions,\n          }}\n          render={<MenuItem />}\n          onClick={() => setExportMenuOpen(false)}\n        >\n          Download as CSV\n        </ExportCsv>\n        <ExportExcel\n          options={{\n            ...(typeof label === \"string\" ? { fileName: label } : {}),\n            ...excelOptions,\n          }}\n          render={<MenuItem />}\n          onClick={() => setExportMenuOpen(false)}\n        >\n          Download as Excel\n        </ExportExcel>\n      </Menu>\n\n      <StyledQuickFilter>\n        <QuickFilterTrigger\n          render={(triggerProps, state) => (\n            <Tooltip title=\"Search\" enterDelay={0}>\n              <StyledToolbarButton\n                {...triggerProps}\n                ownerState={{ expanded: state.expanded }}\n                color=\"default\"\n                aria-disabled={state.expanded}\n              >\n                <SearchIcon fontSize=\"small\" htmlColor={iconColor} />\n              </StyledToolbarButton>\n            </Tooltip>\n          )}\n        />\n        <QuickFilterControl\n          render={({ ref, ...controlProps }, state) => (\n            <StyledTextField\n              {...controlProps}\n              ownerState={{ expanded: state.expanded }}\n              inputRef={ref}\n              aria-label=\"Search\"\n              placeholder=\"Search...\"\n              size=\"small\"\n              slotProps={{\n                input: {\n                  startAdornment: (\n                    <InputAdornment position=\"start\">\n                      <SearchIcon fontSize=\"small\" />\n                    </InputAdornment>\n                  ),\n                  endAdornment: state.value ? (\n                    <InputAdornment position=\"end\">\n                      <QuickFilterClear\n                        edge=\"end\"\n                        size=\"small\"\n                        aria-label=\"Clear search\"\n                        material={{ sx: { marginRight: -0.75 } }}\n                      >\n                        <CancelIcon fontSize=\"small\" />\n                      </QuickFilterClear>\n                    </InputAdornment>\n                  ) : null,\n                  ...controlProps.slotProps?.input,\n                },\n                ...controlProps.slotProps,\n              }}\n            />\n          )}\n        />\n      </StyledQuickFilter>\n    </Toolbar>\n  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+{"version":3,"file":"ui-components.es55.js","sources":["../src/components/GenomeSearch/utils.ts"],"sourcesContent":["import { CCREResponse, GeneResponse, ICREResponse, LegacyCcreResponse, Result, ResultType, SnpResponse, StudyResponse } from \"./types\";\n\n/**\n * Get the coordinates from a string input.\n * @param input - The input string to search for coordinates\n * @param assembly - The assembly to search for coordinates\n * @returns An array of results with the coordinates\n */\nexport function getCoordinates(input: string, assembly: string): Result[] {\n  const results: Result[] = [];\n  input = input.replace(/,/g, \"\");\n\n  let chromosome: string, start: number, end: number;\n\n  if (input.includes(\":\") && input.includes(\"-\")) {\n    chromosome = input.split(\":\")[0];\n    start = parseInt(input.split(\":\")[1].split(\"-\")[0]) || 0;\n    end = parseInt(input.split(\":\")[1].split(\"-\")[1]) || start + 1000;\n  } else if (input.includes(\"\\t\")) {\n    const [chr, startStr, endStr] = input.split(\"\\t\");\n    chromosome = chr;\n    start = parseInt(startStr);\n    end = parseInt(endStr);\n  } else {\n    return results;\n  }\n\n  // Normalize chromosome name to use capital X and Y\n  const normalizedChromosome = chromosome.replace(/chrx$/, \"chrX\").replace(/chry$/, \"chrY\");\n\n  const chrLength = chromosomeLengths[assembly][normalizedChromosome];\n  if (end > start && chrLength && end <= chrLength) {\n    results.push({\n      title: `${normalizedChromosome}:${start.toLocaleString()}-${end.toLocaleString()}`,\n      domain: {\n        chromosome: normalizedChromosome,\n        start: start,\n        end: end,\n      },\n      description: `${normalizedChromosome}:${start.toLocaleString()}-${end.toLocaleString()}`,\n      type: \"Coordinate\",\n    });\n  }\n\n  return results;\n}\n\n// Common interface for result formatting options\ninterface ResultFormatterOptions<T> {\n  getTitle: (result: T) => string;\n  getDescription: (result: T) => string;\n  type: string;\n}\n\n// Generic formatter function\nfunction formatResults<T extends { coordinates: { chromosome: string; start: number; end: number } }>(\n  results: T[] | null,\n  limit: number,\n  options: ResultFormatterOptions<T>\n): Result[] {\n  if (!results) {\n    return [];\n  }\n  return results.slice(0, limit).map((result) => ({\n    title: options.getTitle(result),\n    description: options.getDescription(result),\n    domain: {\n      chromosome: result.coordinates.chromosome,\n      start: result.coordinates.start,\n      end: result.coordinates.end,\n    },\n    type: options.type as ResultType,\n  }));\n}\n\n// Specific formatters using the generic function\nexport function snpResultList(results: SnpResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.id,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`,\n    type: \"SNP\",\n  });\n}\n\nexport function geneResultList(results: GeneResponse[], limit: number, showVersions: boolean): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.name,\n    getDescription: (result) => {\n      let idStr = \"\";\n      result.versions.forEach(\n        (x, i) => (idStr += \"V\" + x.version + \" \" + x.id + (i === result.versions.length - 1 ? \"\" : \"\\n\"))\n      );\n      return `${result.description}\\n${idStr}\\n${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`;\n    },\n    type: \"Gene\",\n  });\n}\n\nexport function studyResultList(results: StudyResponse[], limit: number): Result[] {\n  return results.slice(0, limit).map((result) => ({\n    title: result.disease_trait,\n    description: `${result.author.replace(\"_\", \" \")} (${result.studyid.split(\"-\")[1]})\\n${result.parent_terms.join(\",\")}\\n ${result.has_enrichment_info ? \"Biosample Enrichment\" : \"\"}`,\n    domain: undefined,\n    id: result.studyid,\n    type: \"Study\",\n  }));\n}\n\nexport function omeResultsList(results: OmeOption[]): Result[] {\n  return results.map((ome) => ({\n    title: ome.label,\n    description: ome.description ?? \"\",\n    domain: undefined,\n    id: ome.value,\n    type: \"Ome\",\n  }));\n}\n\nexport function icreResultList(results: ICREResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.accession,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`,\n    type: \"iCRE\",\n  });\n}\n\nexport function ccreResultList(results: CCREResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.accession,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${\n        result.coordinates.end\n      }${result.isiCRE ? \", iCRE\" : \"\"}`,\n    type: \"cCRE\",\n  });\n}\n\nexport function legacyCcreResultList(results: LegacyCcreResponse[], limit: number): Result[] {\n  return results\n    .filter((result) => result.input !== result.v4_match_or_intersecting) //filter v4 cCREs\n    .slice(0, limit)\n    .map((result) => {\n      const region = result.input_region;\n      const overlapping = result.v4_match_or_intersecting\n      return {\n        title: result.input,\n        // !!! Do not change this format without also modifying SCREEN's /search page. This specific formatting is relied upon\n        // At most two overlapping v4 cCREs are ever returned, so a single (non-global) comma replace is sufficient for the \"a, b\" rendering.\n        description: `(Registry ${result.input_latest_previous_version})\\n${result.input_region}\\n${overlapping ? `Intersects v4 cCRE${overlapping.includes(\",\") ? \"s\" : \"\"}: ${overlapping.replace(\",\", \", \")}` : \"No intersecting v4 cCREs\"}`,\n        domain: {\n          chromosome: region.split(\":\")[0],\n          start: parseInt(region.split(\":\")[1].split(\"-\")[0]),\n          end: parseInt(region.split(\":\")[1].split(\"-\")[1]),\n        },\n        type: \"Legacy cCRE\",\n      };\n    });\n}\n\nexport interface OmeOption {\n  label: string;\n  value: string;\n  keywords?: string[];\n  description?: string;\n}\n//allows the user to search more freely and get the result they are looking for\n//will look at label as well as keywords\nexport const OmesList: OmeOption[] = [\n  {\n    label: \"Proteomics\",\n    value: \"proteomics\",\n    keywords: [\"protein\", \"mass spec\"],\n  },\n  {\n    label: \"WGS\",\n    value: \"WGS\",\n    keywords: [\"whole genome sequencing\", \"genome sequencing\", \"genomics\"],\n    description: \"Whole Genome Sequencing\"\n  },\n  {\n    label: \"WGBS\",\n    value: \"WGBS\",\n    keywords: [\"whole genome bisulfite sequencing\", \"epigenomics\", \"methylation\"],\n    description: \"Whole Genome Bisulfite Sequencing\"\n  },\n  {\n    label: \"ATAC\",\n    value: \"ATAC\",\n    keywords: [\"chromatin accessibility\", \"atac-seq\"],\n    description: \"ATAC-seq\"\n  },\n  {\n    label: \"RNA\",\n    value: \"RNA\",\n    keywords: [\"rna-seq\", \"transcriptomics\", \"gene expression\"],\n    description: \"RNA-seq\"\n  },\n  {\n    label: \"Metabolomics\",\n    value: \"metabolomics\",\n  },\n  {\n    label: \"Lipidomics\",\n    value: \"lipidomics\",\n  },\n  {\n    label: \"Metallomics\",\n    value: \"metallomics\",\n  },\n  {\n    label: \"Exposomics\",\n    value: \"exposomics\",\n  },\n];\n\n// Object to store chromosome lengths for GRCh38 and mm10\nconst chromosomeLengths: { [key: string]: { [key: string]: number } } = {\n  GRCh38: {\n    chr1: 248956422,\n    chr2: 242193529,\n    chr3: 198295559,\n    chr4: 190214555,\n    chr5: 181538259,\n    chr6: 170805979,\n    chr7: 159345973,\n    chr8: 145138636,\n    chr9: 138394717,\n    chr10: 133797422,\n    chr11: 135086622,\n    chr12: 133275309,\n    chr13: 114364328,\n    chr14: 107043718,\n    chr15: 101991189,\n    chr16: 90338345,\n    chr17: 83257441,\n    chr18: 80373285,\n    chr19: 58617616,\n    chr20: 64444167,\n    chr21: 46709983,\n    chr22: 50818468,\n    chrX: 156040895,\n    chrY: 57227415,\n  },\n  mm10: {\n    chr1: 195471971,\n    chr2: 182113224,\n    chr3: 160039680,\n    chr4: 156508116,\n    chr5: 151834684,\n    chr6: 149736546,\n    chr7: 145441459,\n    chr8: 129401213,\n    chr9: 124595110,\n    chr10: 130694993,\n    chr11: 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