@weng-lab/ui-components 2.2.1 → 2.2.2

package/dist/ui-components.es62.js

@@ -1,30 +1,9 @@
-import { j as l } from "./ui-components.es15.js";
-import { c as f } from "./ui-components.es17.js";
-import { Switch as x, Box as p, Tooltip as u, FormControlLabel as S } from "@mui/material";
-import { Sort as h } from "@mui/icons-material";
-const g = (a) => {
-  const e = f.c(9), {
-    autoSort: m,
-    setAutoSort: c
-  } = a;
-  let r;
-  e[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (r = {
-    mr: 1
-  }, e[0] = r) : r = e[0];
-  let t;
-  e[1] !== c ? (t = (j, n) => c(n), e[1] = c, e[2] = t) : t = e[2];
-  let o;
-  e[3] !== m || e[4] !== t ? (o = /* @__PURE__ */ l.jsx(x, { color: "primary", size: "small", sx: r, checked: m, onChange: t }), e[3] = m, e[4] = t, e[5] = o) : o = e[5];
-  let s;
-  e[6] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (s = /* @__PURE__ */ l.jsx(p, { sx: {
-    display: "flex",
-    alignItems: "center",
-    lineHeight: 1
-  }, children: /* @__PURE__ */ l.jsx(h, { fontSize: "small" }) }), e[6] = s) : s = e[6];
-  let i;
-  return e[7] !== o ? (i = /* @__PURE__ */ l.jsx(u, { title: "Auto sort selected rows", children: /* @__PURE__ */ l.jsx(S, { value: "autoSort", control: o, label: s, labelPlacement: "start" }) }), e[7] = o, e[8] = i) : i = e[8], i;
-};
+import { createContext as o, useContext as t } from "react";
+const n = o({
+  onDownload: void 0
+}), r = () => t(n);
 export {
-  g as default
+  n as DownloadContext,
+  r as useDownloadContext
 };
 //# sourceMappingURL=ui-components.es62.js.map

package/dist/ui-components.es62.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es62.js","sources":["../src/components/TwoPaneLayout/AutoSortSwitch.tsx"],"sourcesContent":["import React from \"react\";\nimport { Tooltip, FormControlLabel, Switch, Box } from \"@mui/material\";\nimport { Sort } from \"@mui/icons-material\";\n\ninterface AutoSortSwitchProps {\n  autoSort: boolean;\n  setAutoSort: (value: boolean) => void;\n}\n\nconst AutoSortSwitch: React.FC<AutoSortSwitchProps> = ({ autoSort, setAutoSort }) => {\n  return (\n    <Tooltip title=\"Auto sort selected rows\">\n      <FormControlLabel\n        value=\"autoSort\"\n        control={\n          <Switch\n            color=\"primary\"\n            size=\"small\"\n            sx={{ mr: 1 }}\n            checked={autoSort}\n            onChange={(_, checked) => setAutoSort(checked)}\n          />\n        }\n        label={\n          <Box sx={{ display: \"flex\", alignItems: \"center\", lineHeight: 1 }}>\n            <Sort fontSize=\"small\" />\n          </Box>\n        }\n        labelPlacement=\"start\"\n      />\n    </Tooltip>\n  );\n};\n\nexport default AutoSortSwitch;\n"],"names":["AutoSortSwitch","t0","$","_c","autoSort","setAutoSort","t1","Symbol","for","mr","t2","_","checked","t3","jsx","Switch","t4","Box","display","alignItems","lineHeight","Sort","t5","Tooltip","FormControlLabel"],"mappings":";;;;AASA,MAAMA,IAAgDC,CAAAA,MAAA;AAAA,QAAAC,IAAAC,EAAAA,EAAA,CAAA,GAAC;AAAA,IAAAC,UAAAA;AAAAA,IAAAC,aAAAA;AAAAA,EAAAA,IAAAJ;AAAyB,MAAAK;AAAA,EAAAJ,EAAA,CAAA,MAAAK,uBAAAC,IAAA,2BAAA,KAShEF,IAAA;AAAA,IAAAG,IAAM;AAAA,EAAA,GAAGP,OAAAI,KAAAA,IAAAJ,EAAA,CAAA;AAAA,MAAAQ;AAAA,EAAAR,SAAAG,KAEHK,IAAAA,CAAAC,GAAAC,MAAgBP,EAAYO,CAAO,GAACV,OAAAG,GAAAH,OAAAQ,KAAAA,IAAAR,EAAA,CAAA;AAAA,MAAAW;AAAA,EAAAX,EAAA,CAAA,MAAAE,KAAAF,SAAAQ,KALhDG,IAAAC,gBAAAA,EAAAA,IAACC,GAAA,EACO,OAAA,WACD,MAAA,SACD,IAAAT,GACKF,SAAAA,GACC,UAAAM,EAAAA,CAAoC,GAC9CR,OAAAE,GAAAF,OAAAQ,GAAAR,OAAAW,KAAAA,IAAAX,EAAA,CAAA;AAAA,MAAAc;AAAA,EAAAd,EAAA,CAAA,MAAAK,uBAAAC,IAAA,2BAAA,KAGFQ,IAAAF,gBAAAA,EAAAA,IAACG,KAAQ,IAAA;AAAA,IAAAC,SAAW;AAAA,IAAMC,YAAc;AAAA,IAAQC,YAAc;AAAA,EAAA,GAC5D,UAAAN,gBAAAA,EAAAA,IAACO,GAAA,EAAc,UAAA,SAAO,GACxB,GAAMnB,OAAAc,KAAAA,IAAAd,EAAA,CAAA;AAAA,MAAAoB;AAAA,SAAApB,SAAAW,KAfZS,IAAAR,gBAAAA,EAAAA,IAACS,GAAA,EAAc,OAAA,2BACb,gCAACC,GAAA,EACO,OAAA,YAEJ,SAAAX,GASA,OAAAG,GAIa,gBAAA,SAAO,GAE1B,GAAUd,OAAAW,GAAAX,OAAAoB,KAAAA,IAAApB,EAAA,CAAA,GAnBVoB;AAmBU;"}
+{"version":3,"file":"ui-components.es62.js","sources":["../src/components/BiosampleTable/DownloadContext.tsx"],"sourcesContent":["import { createContext, useContext } from \"react\";\n\nexport type DownloadContextType = {\n  onDownload?: (url: string, name: string) => void;\n};\n\nexport const DownloadContext = createContext<DownloadContextType>({\n  onDownload: undefined,\n});\n\nexport const useDownloadContext = () => useContext(DownloadContext);\n"],"names":["DownloadContext","createContext","onDownload","undefined","useDownloadContext","useContext"],"mappings":";AAMO,MAAMA,IAAkBC,EAAmC;AAAA,EAChEC,YAAYC;AACd,CAAC,GAEYC,IAAqBA,MAAMC,EAAWL,CAAe;"}

package/dist/ui-components.es63.js

@@ -1,46 +1,57 @@
-import { c as M } from "./ui-components.es17.js";
-import { useState as d, useRef as E, useEffect as S } from "react";
-function v(r, n, u) {
-  const t = M.c(11), [e, b] = d(!1), m = E(e);
-  let s;
-  t[0] !== e ? (s = () => {
-    m.current = e;
-  }, t[0] = e, t[1] = s) : s = t[1], S(s);
-  let l, _;
-  t[2] !== r || t[3] !== e || t[4] !== n || t[5] !== u ? (l = () => {
-    const c = r?.current;
-    if (!c)
-      return;
-    const o = u ? [] : n;
-    c.setSortModel(e ? [{
-      field: "__check__",
-      sort: "desc"
-    }, ...o] : o);
-  }, _ = [r, e, u, n], t[2] = r, t[3] = e, t[4] = n, t[5] = u, t[6] = l, t[7] = _) : (l = t[6], _ = t[7]), S(l, _);
-  let f;
-  t[8] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (f = (c) => [c.current.subscribeEvent("sortModelChange", (o) => {
-    if (!m.current || o[0]?.field === "__check__")
-      return;
-    const k = o.filter(g);
-    c.current.setSortModel([{
-      field: "__check__",
-      sort: "desc"
-    }, ...k]);
-  }), c.current.subscribeEvent("rowSelectionChange", () => {
-    m.current && c.current.setSortModel([...c.current.getSortModel()]);
-  })], t[8] = f) : f = t[8];
-  const i = f;
-  let h;
-  return t[9] !== e ? (h = {
-    autoSort: e,
-    setAutoSort: b,
-    onReady: i
-  }, t[9] = e, t[10] = h) : h = t[10], h;
-}
-function g(r) {
-  return r.field !== "__check__";
+const s = async (e, n) => {
+  try {
+    const a = await fetch(e, {
+      method: "HEAD"
+    });
+    if (!a.ok)
+      throw new Error("Error fetching file size for " + e);
+    const t = a.headers.get("Content-Length");
+    t && n(parseInt(t, 10));
+  } catch (a) {
+    console.error(a), n(-1);
+  }
+}, o = (e) => e === -1 ? "Unknown Size" : (e / 1e6).toFixed(1) + " MB", i = (e) => {
+  switch (e) {
+    case "atac":
+      return "ATAC";
+    case "ctcf":
+      return "CTCF";
+    case "dnase":
+      return "DNase";
+    case "h3k27ac":
+      return "H3K27ac";
+    case "h3k4me3":
+      return "H3K4me3";
+  }
+};
+function f(e) {
+  const {
+    dnase: n,
+    h3k27ac: a,
+    h3k4me3: t,
+    ctcf: c,
+    atac: r
+  } = e;
+  return n && a && t && c && r ? "All assays available" : !n && !a && !t && !c && !r ? "No assays available" : `Available:
+${n ? `DNase
+` : ""}${a ? `H3K27ac
+` : ""}${t ? `H3K4me3
+` : ""}${c ? `CTCF
+` : ""}${r ? `ATAC
+` : ""}`;
 }
+const h = {
+  dnase: "#06DA93",
+  h3k27ac: "#FFCD00",
+  h3k4me3: "#FF0000",
+  ctcf: "#00B0F0",
+  atac: "#02c7b9"
+};
 export {
-  v as useAutoSort
+  h as ASSAY_COLORS,
+  f as assayHoverInfo,
+  s as fetchFileSize,
+  i as formatAssay,
+  o as formatFileSize
 };
 //# sourceMappingURL=ui-components.es63.js.map

package/dist/ui-components.es63.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es63.js","sources":["../src/components/TwoPaneLayout/useAutoSort.ts"],"sourcesContent":["import { useCallback, useEffect, useRef, useState } from \"react\";\nimport type { RefObject } from \"react\";\nimport type { GridApi, GridSortModel } from \"@mui/x-data-grid-premium\";\n\ntype UseAutoSortReturn = {\n  autoSort: boolean;\n  setAutoSort: (value: boolean) => void;\n  onReady: (readyApiRef: RefObject<GridApi>) => (() => void)[];\n};\n\n/**\n * Manages the \"auto-sort selected rows to top\" behavior for a Table.\n *\n * Owns the autoSort toggle state and all related DataGrid behavior, returning\n * `autoSort` and `setAutoSort` for use in a toolbar toggle, and `onReady` to\n * be composed with the Table's `onReady` prop.\n *\n * `onReady` is used for event subscriptions rather than plain useEffects because\n * the Table is wrapped in <NoSsr>, which defers DataGrid initialization — subscriptions\n * attempted on mount may attach before the api is ready. `onReady` fires inside the\n * NoSsr boundary after the DataGrid is fully initialized.\n *\n * The sort model reset remains a reactive useEffect because it must fire on every\n * autoSort/viewBy change, not just on mount.\n */\nexport function useAutoSort(\n  apiRef: RefObject<GridApi | null>,\n  initialSort: GridSortModel,\n  isPresorted: boolean\n): UseAutoSortReturn {\n  const [autoSort, setAutoSort] = useState(false);\n\n  // Track autoSort in a ref so event handlers always see the current value\n  // without needing to unsubscribe and re-subscribe on every change.\n  const autoSortRef = useRef(autoSort);\n  useEffect(() => {\n    autoSortRef.current = autoSort;\n  });\n\n  // Reactive: reset sort model when autoSort or viewBy changes.\n  // The null guard handles any edge case where this runs before the DataGrid is ready.\n  useEffect(() => {\n    const api = apiRef?.current;\n    if (!api) return;\n\n    const base: GridSortModel = isPresorted ? [] : initialSort;\n    api.setSortModel(autoSort ? [{ field: \"__check__\", sort: \"desc\" }, ...base] : base);\n  }, [apiRef, autoSort, isPresorted, initialSort]);\n\n  // Return a stable onReady callback that attaches event subscriptions once,\n  // after the DataGrid has fully mounted. 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+{"version":3,"file":"ui-components.es63.js","sources":["../src/components/BiosampleTable/helpers.ts"],"sourcesContent":["/**\n * \n * @param url \n * @param handleSetState \n * \n * Attempts to fetch the file size, and sets state with given fn. -1 if unsucessful\n */\nexport const fetchFileSize = async (url: string, handleSetState: (fileSize: number) => void) => {\n  try {\n    const response = await fetch(url, { method: \"HEAD\" });\n    if (!response.ok) {\n      throw new Error(\"Error fetching file size for \" + url)\n    }\n    const contentLength = response.headers.get(\"Content-Length\");\n    if (contentLength) {\n      handleSetState(parseInt(contentLength, 10));\n    }\n  } catch (error) {\n    console.error(error);\n    handleSetState(-1)\n  }\n};\n\nexport const formatFileSize = (fileSize: number) => fileSize === -1 ? \"Unknown Size\" : (fileSize / 1000000).toFixed(1) + \" MB\"\n/**\n *\n * @param assay\n * @returns Formatted assay name\n */\nexport const formatAssay = (assay: CcreAssay) => {\n  switch (assay) {\n    case \"atac\":\n      return \"ATAC\";\n    case \"ctcf\":\n      return \"CTCF\";\n    case \"dnase\":\n      return \"DNase\";\n    case \"h3k27ac\":\n      return \"H3K27ac\";\n    case \"h3k4me3\":\n      return \"H3K4me3\";\n  }\n};\n\nimport { CcreAssay } from \"./types\";\n\n/**\n *\n * @param assays\n * @returns string to display on hover above available assay wheel\n */\nexport function assayHoverInfo(assays: Record<CcreAssay, string | null>) {\n  const { dnase, h3k27ac, h3k4me3, ctcf, atac } = assays;\n\n  if (dnase && h3k27ac && h3k4me3 && ctcf && atac) {\n    return \"All assays available\";\n  } else if (!dnase && !h3k27ac && !h3k4me3 && !ctcf && !atac) {\n    return \"No assays available\";\n  } else\n    return `Available:\\n${dnase ? \"DNase\\n\" : \"\"}${h3k27ac ? \"H3K27ac\\n\" : \"\"}${h3k4me3 ? \"H3K4me3\\n\" : \"\"}${ctcf ? \"CTCF\\n\" : \"\"}${\n      atac ? \"ATAC\\n\" : \"\"\n    }`;\n}\n\nexport const ASSAY_COLORS: Record<CcreAssay, string> = {\n  dnase: \"#06DA93\",\n  h3k27ac: \"#FFCD00\",\n  h3k4me3: \"#FF0000\",\n  ctcf: \"#00B0F0\",\n  atac: \"#02c7b9\",\n};"],"names":["fetchFileSize","url","handleSetState","response","fetch","method","ok","Error","contentLength","headers","get","parseInt","error","console","formatFileSize","fileSize","toFixed","formatAssay","assay","assayHoverInfo","assays","dnase","h3k27ac","h3k4me3","ctcf","atac","ASSAY_COLORS"],"mappings":"AAOO,MAAMA,IAAgB,OAAOC,GAAaC,MAA+C;AAC9F,MAAI;AACF,UAAMC,IAAW,MAAMC,MAAMH,GAAK;AAAA,MAAEI,QAAQ;AAAA,IAAA,CAAQ;AACpD,QAAI,CAACF,EAASG;AACZ,YAAM,IAAIC,MAAM,kCAAkCN,CAAG;AAEvD,UAAMO,IAAgBL,EAASM,QAAQC,IAAI,gBAAgB;AAC3D,IAAIF,KACFN,EAAeS,SAASH,GAAe,EAAE,CAAC;AAAA,EAE9C,SAASI,GAAO;AACdC,YAAQD,MAAMA,CAAK,GACnBV,EAAe,EAAE;AAAA,EACnB;AACF,GAEaY,IAAiBA,CAACC,MAAqBA,MAAa,KAAK,kBAAkBA,IAAW,KAASC,QAAQ,CAAC,IAAI,OAM5GC,IAAcA,CAACC,MAAqB;AAC/C,UAAQA,GAAAA;AAAAA,IACN,KAAK;AACH,aAAO;AAAA,IACT,KAAK;AACH,aAAO;AAAA,IACT,KAAK;AACH,aAAO;AAAA,IACT,KAAK;AACH,aAAO;AAAA,IACT,KAAK;AACH,aAAO;AAAA,EAAA;AAEb;AASO,SAASC,EAAeC,GAA0C;AACvE,QAAM;AAAA,IAAEC,OAAAA;AAAAA,IAAOC,SAAAA;AAAAA,IAASC,SAAAA;AAAAA,IAASC,MAAAA;AAAAA,IAAMC,MAAAA;AAAAA,EAAAA,IAASL;AAEhD,SAAIC,KAASC,KAAWC,KAAWC,KAAQC,IAClC,yBACE,CAACJ,KAAS,CAACC,KAAW,CAACC,KAAW,CAACC,KAAQ,CAACC,IAC9C,wBAEA;AAAA,EAAeJ,IAAQ;AAAA,IAAY,EAAE,GAAGC,IAAU;AAAA,IAAc,EAAE,GAAGC,IAAU;AAAA,IAAc,EAAE,GAAGC,IAAO;AAAA,IAAW,EAAE,GAC3HC,IAAO;AAAA,IAAW,EAAE;AAE1B;AAEO,MAAMC,IAA0C;AAAA,EACrDL,OAAO;AAAA,EACPC,SAAS;AAAA,EACTC,SAAS;AAAA,EACTC,MAAM;AAAA,EACNC,MAAM;AACR;"}

package/dist/ui-components.es64.js

@@ -1,24 +1,165 @@
-import { j as n } from "./ui-components.es15.js";
-import { c as p } from "./ui-components.es17.js";
-import { GRID_CHECKBOX_SELECTION_COL_DEF as i } from "@mui/x-data-grid-premium";
-const a = (e) => {
-  const r = p.c(2), t = i.renderHeader;
-  if (!t)
-    return null;
-  let o;
-  return r[0] !== e ? (o = /* @__PURE__ */ n.jsx("div", { id: "StopPropagationWrapper", onClick: l, children: /* @__PURE__ */ n.jsx(t, { ...e }) }), r[0] = e, r[1] = o) : o = r[1], o;
-}, d = {
-  ...i,
-  //Override checkbox column https://mui.com/x/react-data-grid/row-selection/#custom-checkbox-column
-  sortable: !0,
-  hideable: !1,
-  renderHeader: a
+import { j as l } from "./ui-components.es15.js";
+import { c as de } from "./ui-components.es16.js";
+import { Box as fe, Divider as me, Typography as ge, IconButton as pe, Tooltip as he, DialogTitle as ue, Checkbox as X, FormControlLabel as Y, DialogContent as xe, Stack as be, Button as Z, DialogActions as je, Dialog as Ce } from "@mui/material";
+import { useState as S } from "react";
+import { Download as _e } from "@mui/icons-material";
+import { ontologyDownloadMap as we } from "./ui-components.es342.js";
+import { formatFileSize as ee, fetchFileSize as le } from "./ui-components.es63.js";
+import { useDownloadContext as De } from "./ui-components.es62.js";
+const ke = (n) => {
+  const e = n.toLowerCase().replace(/\s+/g, "_");
+  return we[e] ?? [];
+}, Oe = (n) => {
+  const e = de.c(66), {
+    ontology: o
+  } = n, [I, F] = S(!1), [c, te] = S(!1), [r, oe] = S(!1), [D, ne] = S(null), [k, ie] = S(null), {
+    onDownload: A
+  } = De();
+  let t, i, E;
+  e[0] !== o ? (t = ke(o), i = t.find(ye)?.filename ?? void 0, E = t.find(Se)?.filename ?? void 0, e[0] = o, e[1] = t, e[2] = i, e[3] = E) : (t = e[1], i = e[2], E = e[3]);
+  const a = E;
+  let v;
+  e[4] !== a || e[5] !== k || e[6] !== i || e[7] !== D ? (v = () => {
+    i && !D && le(`https://downloads.wenglab.org/${i}`, ne), a && !k && le(`https://downloads.wenglab.org/${a}`, ie), F(!0);
+  }, e[4] = a, e[5] = k, e[6] = i, e[7] = D, e[8] = v) : v = e[8];
+  const U = v;
+  let $;
+  e[9] !== r || e[10] !== a || e[11] !== t || e[12] !== i || e[13] !== c || e[14] !== A || e[15] !== o ? ($ = () => {
+    if (!t || t.length === 0)
+      return;
+    const s = [];
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+        label: ce
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+}
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+  return /* @__PURE__ */ l.jsx("li", { children: n.label }, n.filename);
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 export {
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+  ke as getAvailableFiles
 };
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package/dist/ui-components.es64.js.map

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package/dist/ui-components.es68.js

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 import { Launch as J } from "@mui/icons-material";
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package/dist/ui-components.es72.js

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@@ -1 +1 @@
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+{"version":3,"file":"ui-components.es76.js","sources":["../../../node_modules/.pnpm/@mui+icons-material@7.3.9_@mui+material@7.3.9_@emotion+react@11.14.0_@types+react@19.2._dc2be6bc014bebdac88a574e3e02c144/node_modules/@mui/icons-material/esm/Cancel.js"],"sourcesContent":["\"use client\";\n\nimport createSvgIcon from \"./utils/createSvgIcon.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n  d: \"M12 2C6.47 2 2 6.47 2 12s4.47 10 10 10 10-4.47 10-10S17.53 2 12 2m5 13.59L15.59 17 12 13.41 8.41 17 7 15.59 10.59 12 7 8.41 8.41 7 12 10.59 15.59 7 17 8.41 13.41 12z\"\n}), 'Cancel');"],"names":["CancelIcon","createSvgIcon","_jsx"],"mappings":";;AAIA,MAAAA,IAAeC,EAA2BC,gBAAAA,EAAAA,IAAK,QAAQ;AAAA,EACrD,GAAG;AACL,CAAC,GAAG,QAAQ;","x_google_ignoreList":[0]}