@weng-lab/ui-components 2.0.0 → 2.0.1

package/dist/ui-components.es56.js

@@ -1,146 +1,245 @@
-import o from "./ui-components.es153.js";
-import b from "./ui-components.es169.js";
-function l(e, t = 0, n = 1) {
-  return process.env.NODE_ENV !== "production" && (e < t || e > n) && console.error(`MUI: The value provided ${e} is out of range [${t}, ${n}].`), b(e, t, n);
-}
-function v(e) {
-  e = e.slice(1);
-  const t = new RegExp(`.{1,${e.length >= 6 ? 2 : 1}}`, "g");
-  let n = e.match(t);
-  return n && n[0].length === 1 && (n = n.map((r) => r + r)), process.env.NODE_ENV !== "production" && e.length !== e.trim().length && console.error(`MUI: The color: "${e}" is invalid. Make sure the color input doesn't contain leading/trailing space.`), n ? `rgb${n.length === 4 ? "a" : ""}(${n.map((r, s) => s < 3 ? parseInt(r, 16) : Math.round(parseInt(r, 16) / 255 * 1e3) / 1e3).join(", ")})` : "";
-}
-function a(e) {
-  if (e.type)
-    return e;
-  if (e.charAt(0) === "#")
-    return a(v(e));
-  const t = e.indexOf("("), n = e.substring(0, t);
-  if (!["rgb", "rgba", "hsl", "hsla", "color"].includes(n))
-    throw new Error(process.env.NODE_ENV !== "production" ? `MUI: Unsupported \`${e}\` color.
-The following formats are supported: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color().` : o(9, e));
-  let r = e.substring(t + 1, e.length - 1), s;
-  if (n === "color") {
-    if (r = r.split(" "), s = r.shift(), r.length === 4 && r[3].charAt(0) === "/" && (r[3] = r[3].slice(1)), !["srgb", "display-p3", "a98-rgb", "prophoto-rgb", "rec-2020"].includes(s))
-      throw new Error(process.env.NODE_ENV !== "production" ? `MUI: unsupported \`${s}\` color space.
-The following color spaces are supported: srgb, display-p3, a98-rgb, prophoto-rgb, rec-2020.` : o(10, s));
-  } else
-    r = r.split(",");
-  return r = r.map((i) => parseFloat(i)), {
-    type: n,
-    values: r,
-    colorSpace: s
-  };
-}
-const $ = (e) => {
-  const t = a(e);
-  return t.values.slice(0, 3).map((n, r) => t.type.includes("hsl") && r !== 0 ? `${n}%` : n).join(" ");
-}, C = (e, t) => {
-  try {
-    return $(e);
-  } catch {
-    return t && process.env.NODE_ENV !== "production" && console.warn(t), e;
+const d = `
+  query suggestions($assembly: String!, $snpid: String!) {
+      snpAutocompleteQuery(assembly: $assembly, snpid: $snpid) {
+          id
+          coordinates {
+              chromosome
+              start
+              end
+          }
+      }
   }
-};
-function u(e) {
-  const {
-    type: t,
-    colorSpace: n
-  } = e;
-  let {
-    values: r
-  } = e;
-  return t.includes("rgb") ? r = r.map((s, i) => i < 3 ? parseInt(s, 10) : s) : t.includes("hsl") && (r[1] = `${r[1]}%`, r[2] = `${r[2]}%`), t.includes("color") ? r = `${n} ${r.join(" ")}` : r = `${r.join(", ")}`, `${t}(${r})`;
-}
-function M(e) {
-  e = a(e);
-  const {
-    values: t
-  } = e, n = t[0], r = t[1] / 100, s = t[2] / 100, i = r * Math.min(s, 1 - s), p = (y, d = (y + n / 30) % 12) => s - i * Math.max(Math.min(d - 3, 9 - d, 1), -1);
-  let g = "rgb";
-  const f = [Math.round(p(0) * 255), Math.round(p(8) * 255), Math.round(p(4) * 255)];
-  return e.type === "hsla" && (g += "a", f.push(t[3])), u({
-    type: g,
-    values: f
-  });
-}
-function h(e) {
-  e = a(e);
-  let t = e.type === "hsl" || e.type === "hsla" ? a(M(e)).values : e.values;
-  return t = t.map((n) => (e.type !== "color" && (n /= 255), n <= 0.03928 ? n / 12.92 : ((n + 0.055) / 1.055) ** 2.4)), Number((0.2126 * t[0] + 0.7152 * t[1] + 0.0722 * t[2]).toFixed(3));
-}
-function I(e, t) {
-  const n = h(e), r = h(t);
-  return (Math.max(n, r) + 0.05) / (Math.min(n, r) + 0.05);
-}
-function E(e, t) {
-  return e = a(e), t = l(t), (e.type === "rgb" || e.type === "hsl") && (e.type += "a"), e.type === "color" ? e.values[3] = `/${t}` : e.values[3] = t, u(e);
-}
-function D(e, t, n) {
-  try {
-    return E(e, t);
-  } catch {
-    return e;
+`, y = `
+  query Genes(
+      $id: [String]
+      $name: [String]
+      $strand: String
+      $chromosome: String
+      $start: Int
+      $end: Int
+      $gene_type: String
+      $havana_id: String
+      $name_prefix: [String!]
+      $limit: Int
+      $assembly: String!
+      $version: Int
+  ) {
+      gene(
+          id: $id
+          name: $name
+          strand: $strand
+          chromosome: $chromosome
+          start: $start
+          end: $end
+          gene_type: $gene_type
+          havana_id: $havana_id
+          name_prefix: $name_prefix
+          limit: $limit
+          assembly: $assembly
+          orderby: "name"
+          version: $version
+      ) {
+          id
+          name
+          coordinates {
+              chromosome
+              start
+              end
+          }
+      }
   }
-}
-function c(e, t) {
-  if (e = a(e), t = l(t), e.type.includes("hsl"))
-    e.values[2] *= 1 - t;
-  else if (e.type.includes("rgb") || e.type.includes("color"))
-    for (let n = 0; n < 3; n += 1)
-      e.values[n] *= 1 - t;
-  return u(e);
-}
-function O(e, t, n) {
-  try {
-    return c(e, t);
-  } catch {
-    return e;
+`, g = `
+  query iCREQuery($accession_prefix: [String!], $limit: Int) {
+      iCREQuery(accession_prefix: $accession_prefix, limit: $limit) {
+          rdhs
+          accession
+          celltypes
+          coordinates {
+              start
+              end
+              chromosome
+          }
+      }
   }
-}
-function m(e, t) {
-  if (e = a(e), t = l(t), e.type.includes("hsl"))
-    e.values[2] += (100 - e.values[2]) * t;
-  else if (e.type.includes("rgb"))
-    for (let n = 0; n < 3; n += 1)
-      e.values[n] += (255 - e.values[n]) * t;
-  else if (e.type.includes("color"))
-    for (let n = 0; n < 3; n += 1)
-      e.values[n] += (1 - e.values[n]) * t;
-  return u(e);
-}
-function T(e, t, n) {
-  try {
-    return m(e, t);
-  } catch {
-    return e;
+`, _ = `
+  query cCREAutocompleteQuery(
+    $accession_prefix: [String!]
+    $assembly: String!
+    $includeiCREs: Boolean
+    $limit: Int
+  ) {
+    cCREAutocompleteQuery(
+      includeiCREs: $includeiCREs
+      assembly: $assembly
+      limit: $limit
+      accession_prefix: $accession_prefix
+    ) {
+      accession
+      isiCRE
+      coordinates {
+        chromosome
+        start
+        end
+      }
+    }
   }
-}
-function w(e, t = 0.15) {
-  return h(e) > 0.5 ? c(e, t) : m(e, t);
-}
-function x(e, t, n) {
-  try {
-    return w(e, t);
-  } catch {
-    return e;
+`, h = `
+  query getv2v3CcreMapping($accessions: [String], $assembly: String!) {
+    ccreMappings: getv2cCREMappings(
+      v2_accession: $accessions
+      assembly: $assembly
+    ) {
+      input: v2_accession
+      input_latest_previous_version: ccre_version
+      input_region: v2_region
+      v4_match_or_intersecting: v4_accession
+      v4_region
+    }
   }
+`, u = `
+query getGWASStudyMetadata($studyid: [String], $limit: Int, $studyname_prefix: [String], $parent_terms: [String]){
+    getGWASStudiesMetadata(studyid: $studyid, limit: $limit, parent_terms: $parent_terms, studyname_prefix: $studyname_prefix )
+    {
+        studyid
+        author
+        disease_trait
+        has_enrichment_info
+        population
+        parent_terms
+        total_ld_blocks
+        ld_blocks_overlapping_ccres
+        overlapping_ccres
+    }
+}
+`, f = async (e, s, n) => (await fetch("https://screen.api.wenglab.org/graphql", {
+  method: "POST",
+  body: JSON.stringify({
+    query: g,
+    variables: {
+      accession_prefix: [e],
+      limit: s
+    }
+  }),
+  headers: {
+    "Content-Type": "application/json"
+  },
+  signal: n
+})).json(), v = async (e, s, n, t, r) => (await fetch("https://screen.api.wenglab.org/graphql", {
+  method: "POST",
+  body: JSON.stringify({
+    query: _,
+    variables: {
+      accession_prefix: [e],
+      assembly: s.toLowerCase(),
+      limit: n,
+      includeiCREs: t
+    }
+  }),
+  headers: {
+    "Content-Type": "application/json"
+  },
+  signal: r
+})).json(), E = async (e, s, n) => (await fetch("https://screen.api.wenglab.org/graphql", {
+  method: "POST",
+  body: JSON.stringify({
+    query: h,
+    variables: {
+      accessions: [e],
+      assembly: s
+    }
+  }),
+  headers: {
+    "Content-Type": "application/json"
+  },
+  signal: n
+})).json(), R = async (e, s, n, t, r) => {
+  let o = t ? typeof t == "number" ? [t] : t : [s === "GRCh38" ? 40 : 25];
+  o = o.sort((i, a) => a - i);
+  const m = await Promise.all(o.map((i) => fetch("https://screen.api.wenglab.org/graphql", {
+    method: "POST",
+    body: JSON.stringify({
+      query: y,
+      variables: {
+        assembly: s.toLowerCase(),
+        name_prefix: e,
+        version: i,
+        limit: n
+      }
+    }),
+    headers: {
+      "Content-Type": "application/json"
+    },
+    signal: r
+  }).then((a) => a.json()))), p = /* @__PURE__ */ new Map();
+  return m.forEach((i, a) => {
+    (i.data.gene || []).forEach((c) => {
+      p.has(c.name) ? p.get(c.name).versions.push({
+        id: c.id,
+        version: o[a]
+      }) : p.set(c.name, {
+        gene: c,
+        versions: [{
+          id: c.id,
+          version: o[a]
+        }]
+      });
+    });
+  }), await Promise.all(Array.from(p.values()).map(async ({
+    gene: i,
+    versions: a
+  }) => {
+    const l = await C(i.name);
+    return {
+      ...i,
+      description: `${$(l || i.name)}`,
+      versions: a
+    };
+  }));
+}, $ = (e) => e.split(" ").map((s) => s.charAt(0).toUpperCase() + s.slice(1)).join(" ");
+async function C(e) {
+  const n = await (await fetch("https://clinicaltables.nlm.nih.gov/api/ncbi_genes/v3/search?authenticity_token=&terms=" + e.toUpperCase())).json(), t = n[3] && n[3].filter((r) => r[3] === e.toUpperCase());
+  return t && t.length >= 1 ? t[0][4] : null;
 }
+const T = async (e, s, n, t) => (await fetch("https://screen.api.wenglab.org/graphql", {
+  method: "POST",
+  body: JSON.stringify({
+    query: d,
+    variables: {
+      assembly: s.toLowerCase(),
+      snpid: e,
+      limit: n
+    }
+  }),
+  headers: {
+    "Content-Type": "application/json"
+  },
+  signal: t
+})).json(), O = async (e, s, n) => (await fetch("https://screen.api.wenglab.org/graphql", {
+  method: "POST",
+  body: JSON.stringify({
+    query: u,
+    variables: {
+      studyname_prefix: [e],
+      limit: s
+    }
+  }),
+  headers: {
+    "Content-Type": "application/json"
+  },
+  signal: n
+})).json();
 export {
-  E as alpha,
-  $ as colorChannel,
-  c as darken,
-  a as decomposeColor,
-  w as emphasize,
-  I as getContrastRatio,
-  h as getLuminance,
-  v as hexToRgb,
-  M as hslToRgb,
-  m as lighten,
-  D as private_safeAlpha,
-  C as private_safeColorChannel,
-  O as private_safeDarken,
-  x as private_safeEmphasize,
-  T as private_safeLighten,
-  u as recomposeColor
+  _ as CCRE_AUTOCOMPLETE_QUERY,
+  y as GENE_AUTOCOMPLETE_QUERY,
+  u as GWAS_AUTOCOMPLETE_QUERY,
+  g as ICRE_AUTOCOMPLETE_QUERY,
+  h as LEGACY_CCRE_QUERY,
+  d as SNP_AUTOCOMPLETE_QUERY,
+  v as getCCREs,
+  R as getGenes,
+  f as getICREs,
+  E as getLegacyCCREs,
+  T as getSNPs,
+  O as getStudys
 };
 //# sourceMappingURL=ui-components.es56.js.map

package/dist/ui-components.es56.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es56.js","sources":["../../../node_modules/.pnpm/@mui+system@7.2.0_@emotion+react@11.14.0_@types+react@19.1.8_react@19.1.0__@emotion+sty_7f3319f308133a2adcfe5767030e6962/node_modules/@mui/system/esm/colorManipulator/colorManipulator.js"],"sourcesContent":["import _formatErrorMessage from \"@mui/utils/formatMuiErrorMessage\";\n/* eslint-disable @typescript-eslint/naming-convention */\nimport clamp from '@mui/utils/clamp';\n\n/**\n * Returns a number whose value is limited to the given range.\n * @param {number} value The value to be clamped\n * @param {number} min The lower boundary of the output range\n * @param {number} max The upper boundary of the output range\n * @returns {number} A number in the range [min, max]\n */\nfunction clampWrapper(value, min = 0, max = 1) {\n  if (process.env.NODE_ENV !== 'production') {\n    if (value < min || value > max) {\n      console.error(`MUI: The value provided ${value} is out of range [${min}, ${max}].`);\n    }\n  }\n  return clamp(value, min, max);\n}\n\n/**\n * Converts a color from CSS hex format to CSS rgb format.\n * @param {string} color - Hex color, i.e. #nnn or #nnnnnn\n * @returns {string} A CSS rgb color string\n */\nexport function hexToRgb(color) {\n  color = color.slice(1);\n  const re = new RegExp(`.{1,${color.length >= 6 ? 2 : 1}}`, 'g');\n  let colors = color.match(re);\n  if (colors && colors[0].length === 1) {\n    colors = colors.map(n => n + n);\n  }\n  if (process.env.NODE_ENV !== 'production') {\n    if (color.length !== color.trim().length) {\n      console.error(`MUI: The color: \"${color}\" is invalid. Make sure the color input doesn't contain leading/trailing space.`);\n    }\n  }\n  return colors ? `rgb${colors.length === 4 ? 'a' : ''}(${colors.map((n, index) => {\n    return index < 3 ? parseInt(n, 16) : Math.round(parseInt(n, 16) / 255 * 1000) / 1000;\n  }).join(', ')})` : '';\n}\nfunction intToHex(int) {\n  const hex = int.toString(16);\n  return hex.length === 1 ? `0${hex}` : hex;\n}\n\n/**\n * Returns an object with the type and values of a color.\n *\n * Note: Does not support rgb % values.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @returns {object} - A MUI color object: {type: string, values: number[]}\n */\nexport function decomposeColor(color) {\n  // Idempotent\n  if (color.type) {\n    return color;\n  }\n  if (color.charAt(0) === '#') {\n    return decomposeColor(hexToRgb(color));\n  }\n  const marker = color.indexOf('(');\n  const type = color.substring(0, marker);\n  if (!['rgb', 'rgba', 'hsl', 'hsla', 'color'].includes(type)) {\n    throw new Error(process.env.NODE_ENV !== \"production\" ? `MUI: Unsupported \\`${color}\\` color.\\n` + 'The following formats are supported: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color().' : _formatErrorMessage(9, color));\n  }\n  let values = color.substring(marker + 1, color.length - 1);\n  let colorSpace;\n  if (type === 'color') {\n    values = values.split(' ');\n    colorSpace = values.shift();\n    if (values.length === 4 && values[3].charAt(0) === '/') {\n      values[3] = values[3].slice(1);\n    }\n    if (!['srgb', 'display-p3', 'a98-rgb', 'prophoto-rgb', 'rec-2020'].includes(colorSpace)) {\n      throw new Error(process.env.NODE_ENV !== \"production\" ? `MUI: unsupported \\`${colorSpace}\\` color space.\\n` + 'The following color spaces are supported: srgb, display-p3, a98-rgb, prophoto-rgb, rec-2020.' : _formatErrorMessage(10, colorSpace));\n    }\n  } else {\n    values = values.split(',');\n  }\n  values = values.map(value => parseFloat(value));\n  return {\n    type,\n    values,\n    colorSpace\n  };\n}\n\n/**\n * Returns a channel created from the input color.\n *\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @returns {string} - The channel for the color, that can be used in rgba or hsla colors\n */\nexport const colorChannel = color => {\n  const decomposedColor = decomposeColor(color);\n  return decomposedColor.values.slice(0, 3).map((val, idx) => decomposedColor.type.includes('hsl') && idx !== 0 ? `${val}%` : val).join(' ');\n};\nexport const private_safeColorChannel = (color, warning) => {\n  try {\n    return colorChannel(color);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n};\n\n/**\n * Converts a color object with type and values to a string.\n * @param {object} color - Decomposed color\n * @param {string} color.type - One of: 'rgb', 'rgba', 'hsl', 'hsla', 'color'\n * @param {array} color.values - [n,n,n] or [n,n,n,n]\n * @returns {string} A CSS color string\n */\nexport function recomposeColor(color) {\n  const {\n    type,\n    colorSpace\n  } = color;\n  let {\n    values\n  } = color;\n  if (type.includes('rgb')) {\n    // Only convert the first 3 values to int (i.e. not alpha)\n    values = values.map((n, i) => i < 3 ? parseInt(n, 10) : n);\n  } else if (type.includes('hsl')) {\n    values[1] = `${values[1]}%`;\n    values[2] = `${values[2]}%`;\n  }\n  if (type.includes('color')) {\n    values = `${colorSpace} ${values.join(' ')}`;\n  } else {\n    values = `${values.join(', ')}`;\n  }\n  return `${type}(${values})`;\n}\n\n/**\n * Converts a color from CSS rgb format to CSS hex format.\n * @param {string} color - RGB color, i.e. rgb(n, n, n)\n * @returns {string} A CSS rgb color string, i.e. #nnnnnn\n */\nexport function rgbToHex(color) {\n  // Idempotent\n  if (color.startsWith('#')) {\n    return color;\n  }\n  const {\n    values\n  } = decomposeColor(color);\n  return `#${values.map((n, i) => intToHex(i === 3 ? Math.round(255 * n) : n)).join('')}`;\n}\n\n/**\n * Converts a color from hsl format to rgb format.\n * @param {string} color - HSL color values\n * @returns {string} rgb color values\n */\nexport function hslToRgb(color) {\n  color = decomposeColor(color);\n  const {\n    values\n  } = color;\n  const h = values[0];\n  const s = values[1] / 100;\n  const l = values[2] / 100;\n  const a = s * Math.min(l, 1 - l);\n  const f = (n, k = (n + h / 30) % 12) => l - a * Math.max(Math.min(k - 3, 9 - k, 1), -1);\n  let type = 'rgb';\n  const rgb = [Math.round(f(0) * 255), Math.round(f(8) * 255), Math.round(f(4) * 255)];\n  if (color.type === 'hsla') {\n    type += 'a';\n    rgb.push(values[3]);\n  }\n  return recomposeColor({\n    type,\n    values: rgb\n  });\n}\n/**\n * The relative brightness of any point in a color space,\n * normalized to 0 for darkest black and 1 for lightest white.\n *\n * Formula: https://www.w3.org/TR/WCAG20-TECHS/G17.html#G17-tests\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @returns {number} The relative brightness of the color in the range 0 - 1\n */\nexport function getLuminance(color) {\n  color = decomposeColor(color);\n  let rgb = color.type === 'hsl' || color.type === 'hsla' ? decomposeColor(hslToRgb(color)).values : color.values;\n  rgb = rgb.map(val => {\n    if (color.type !== 'color') {\n      val /= 255; // normalized\n    }\n    return val <= 0.03928 ? val / 12.92 : ((val + 0.055) / 1.055) ** 2.4;\n  });\n\n  // Truncate at 3 digits\n  return Number((0.2126 * rgb[0] + 0.7152 * rgb[1] + 0.0722 * rgb[2]).toFixed(3));\n}\n\n/**\n * Calculates the contrast ratio between two colors.\n *\n * Formula: https://www.w3.org/TR/WCAG20-TECHS/G17.html#G17-tests\n * @param {string} foreground - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla()\n * @param {string} background - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla()\n * @returns {number} A contrast ratio value in the range 0 - 21.\n */\nexport function getContrastRatio(foreground, background) {\n  const lumA = getLuminance(foreground);\n  const lumB = getLuminance(background);\n  return (Math.max(lumA, lumB) + 0.05) / (Math.min(lumA, lumB) + 0.05);\n}\n\n/**\n * Sets the absolute transparency of a color.\n * Any existing alpha values are overwritten.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} value - value to set the alpha channel to in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function alpha(color, value) {\n  color = decomposeColor(color);\n  value = clampWrapper(value);\n  if (color.type === 'rgb' || color.type === 'hsl') {\n    color.type += 'a';\n  }\n  if (color.type === 'color') {\n    color.values[3] = `/${value}`;\n  } else {\n    color.values[3] = value;\n  }\n  return recomposeColor(color);\n}\nexport function private_safeAlpha(color, value, warning) {\n  try {\n    return alpha(color, value);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Darkens a color.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} coefficient - multiplier in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function darken(color, coefficient) {\n  color = decomposeColor(color);\n  coefficient = clampWrapper(coefficient);\n  if (color.type.includes('hsl')) {\n    color.values[2] *= 1 - coefficient;\n  } else if (color.type.includes('rgb') || color.type.includes('color')) {\n    for (let i = 0; i < 3; i += 1) {\n      color.values[i] *= 1 - coefficient;\n    }\n  }\n  return recomposeColor(color);\n}\nexport function private_safeDarken(color, coefficient, warning) {\n  try {\n    return darken(color, coefficient);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Lightens a color.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} coefficient - multiplier in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function lighten(color, coefficient) {\n  color = decomposeColor(color);\n  coefficient = clampWrapper(coefficient);\n  if (color.type.includes('hsl')) {\n    color.values[2] += (100 - color.values[2]) * coefficient;\n  } else if (color.type.includes('rgb')) {\n    for (let i = 0; i < 3; i += 1) {\n      color.values[i] += (255 - color.values[i]) * coefficient;\n    }\n  } else if (color.type.includes('color')) {\n    for (let i = 0; i < 3; i += 1) {\n      color.values[i] += (1 - color.values[i]) * coefficient;\n    }\n  }\n  return recomposeColor(color);\n}\nexport function private_safeLighten(color, coefficient, warning) {\n  try {\n    return lighten(color, coefficient);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Darken or lighten a color, depending on its luminance.\n * Light colors are darkened, dark colors are lightened.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} coefficient=0.15 - multiplier in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function emphasize(color, coefficient = 0.15) {\n  return getLuminance(color) > 0.5 ? darken(color, coefficient) : lighten(color, coefficient);\n}\nexport function private_safeEmphasize(color, coefficient, warning) {\n  try {\n    return emphasize(color, coefficient);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Blend a transparent overlay color with a background color, resulting in a single\n * RGB color.\n * @param {string} background - CSS color\n * @param {string} overlay - CSS color\n * @param {number} opacity - Opacity multiplier in the range 0 - 1\n * @param {number} [gamma=1.0] - Gamma correction factor. For gamma-correct blending, 2.2 is usual.\n */\nexport function blend(background, overlay, opacity, gamma = 1.0) {\n  const blendChannel = (b, o) => Math.round((b ** (1 / gamma) * (1 - opacity) + o ** (1 / gamma) * opacity) ** gamma);\n  const backgroundColor = decomposeColor(background);\n  const overlayColor = decomposeColor(overlay);\n  const rgb = [blendChannel(backgroundColor.values[0], overlayColor.values[0]), blendChannel(backgroundColor.values[1], overlayColor.values[1]), blendChannel(backgroundColor.values[2], overlayColor.values[2])];\n  return recomposeColor({\n    type: 'rgb',\n    values: rgb\n  });\n}"],"names":["clampWrapper","value","min","max","clamp","hexToRgb","color","re","colors","n","index","decomposeColor","marker","type","_formatErrorMessage","values","colorSpace","colorChannel","decomposedColor","val","idx","private_safeColorChannel","warning","recomposeColor","hslToRgb","h","s","l","a","f","k","rgb","getLuminance","getContrastRatio","foreground","background","lumA","lumB","alpha","private_safeAlpha","darken","coefficient","i","private_safeDarken","lighten","private_safeLighten","emphasize","private_safeEmphasize"],"mappings":";;AAWA,SAASA,EAAaC,GAAOC,IAAM,GAAGC,IAAM,GAAG;AAC7C,SAAI,QAAQ,IAAI,aAAa,iBACvBF,IAAQC,KAAOD,IAAQE,MACzB,QAAQ,MAAM,2BAA2BF,CAAK,qBAAqBC,CAAG,KAAKC,CAAG,IAAI,GAG/EC,EAAMH,GAAOC,GAAKC,CAAG;AAC9B;AAOO,SAASE,EAASC,GAAO;AAC9B,EAAAA,IAAQA,EAAM,MAAM,CAAC;AACrB,QAAMC,IAAK,IAAI,OAAO,OAAOD,EAAM,UAAU,IAAI,IAAI,CAAC,KAAK,GAAG;AAC9D,MAAIE,IAASF,EAAM,MAAMC,CAAE;AAC3B,SAAIC,KAAUA,EAAO,CAAC,EAAE,WAAW,MACjCA,IAASA,EAAO,IAAI,CAAAC,MAAKA,IAAIA,CAAC,IAE5B,QAAQ,IAAI,aAAa,gBACvBH,EAAM,WAAWA,EAAM,KAAI,EAAG,UAChC,QAAQ,MAAM,oBAAoBA,CAAK,iFAAiF,GAGrHE,IAAS,MAAMA,EAAO,WAAW,IAAI,MAAM,EAAE,IAAIA,EAAO,IAAI,CAACC,GAAGC,MAC9DA,IAAQ,IAAI,SAASD,GAAG,EAAE,IAAI,KAAK,MAAM,SAASA,GAAG,EAAE,IAAI,MAAM,GAAI,IAAI,GACjF,EAAE,KAAK,IAAI,CAAC,MAAM;AACrB;AAaO,SAASE,EAAeL,GAAO;AAEpC,MAAIA,EAAM;AACR,WAAOA;AAET,MAAIA,EAAM,OAAO,CAAC,MAAM;AACtB,WAAOK,EAAeN,EAASC,CAAK,CAAC;AAEvC,QAAMM,IAASN,EAAM,QAAQ,GAAG,GAC1BO,IAAOP,EAAM,UAAU,GAAGM,CAAM;AACtC,MAAI,CAAC,CAAC,OAAO,QAAQ,OAAO,QAAQ,OAAO,EAAE,SAASC,CAAI;AACxD,UAAM,IAAI,MAAM,QAAQ,IAAI,aAAa,eAAe,sBAAsBP,CAAK;AAAA,8FAA+GQ,EAAoB,GAAGR,CAAK,CAAC;AAEjO,MAAIS,IAAST,EAAM,UAAUM,IAAS,GAAGN,EAAM,SAAS,CAAC,GACrDU;AACJ,MAAIH,MAAS;AAMX,QALAE,IAASA,EAAO,MAAM,GAAG,GACzBC,IAAaD,EAAO,MAAK,GACrBA,EAAO,WAAW,KAAKA,EAAO,CAAC,EAAE,OAAO,CAAC,MAAM,QACjDA,EAAO,CAAC,IAAIA,EAAO,CAAC,EAAE,MAAM,CAAC,IAE3B,CAAC,CAAC,QAAQ,cAAc,WAAW,gBAAgB,UAAU,EAAE,SAASC,CAAU;AACpF,YAAM,IAAI,MAAM,QAAQ,IAAI,aAAa,eAAe,sBAAsBA,CAAU;AAAA,gGAAuHF,EAAoB,IAAIE,CAAU,CAAC;AAAA;AAGpP,IAAAD,IAASA,EAAO,MAAM,GAAG;AAE3B,SAAAA,IAASA,EAAO,IAAI,CAAAd,MAAS,WAAWA,CAAK,CAAC,GACvC;AAAA,IACL,MAAAY;AAAA,IACA,QAAAE;AAAA,IACA,YAAAC;AAAA,EACJ;AACA;AAQY,MAACC,IAAe,CAAAX,MAAS;AACnC,QAAMY,IAAkBP,EAAeL,CAAK;AAC5C,SAAOY,EAAgB,OAAO,MAAM,GAAG,CAAC,EAAE,IAAI,CAACC,GAAKC,MAAQF,EAAgB,KAAK,SAAS,KAAK,KAAKE,MAAQ,IAAI,GAAGD,CAAG,MAAMA,CAAG,EAAE,KAAK,GAAG;AAC3I,GACaE,IAA2B,CAACf,GAAOgB,MAAY;AAC1D,MAAI;AACF,WAAOL,EAAaX,CAAK;AAAA,EAC3B,QAAgB;AACd,WAAIgB,KAAW,QAAQ,IAAI,aAAa,gBACtC,QAAQ,KAAKA,CAAO,GAEfhB;AAAA,EACT;AACF;AASO,SAASiB,EAAejB,GAAO;AACpC,QAAM;AAAA,IACJ,MAAAO;AAAA,IACA,YAAAG;AAAA,EACJ,IAAMV;AACJ,MAAI;AAAA,IACF,QAAAS;AAAA,EACJ,IAAMT;AACJ,SAAIO,EAAK,SAAS,KAAK,IAErBE,IAASA,EAAO,IAAI,CAACN,GAAG,MAAM,IAAI,IAAI,SAASA,GAAG,EAAE,IAAIA,CAAC,IAChDI,EAAK,SAAS,KAAK,MAC5BE,EAAO,CAAC,IAAI,GAAGA,EAAO,CAAC,CAAC,KACxBA,EAAO,CAAC,IAAI,GAAGA,EAAO,CAAC,CAAC,MAEtBF,EAAK,SAAS,OAAO,IACvBE,IAAS,GAAGC,CAAU,IAAID,EAAO,KAAK,GAAG,CAAC,KAE1CA,IAAS,GAAGA,EAAO,KAAK,IAAI,CAAC,IAExB,GAAGF,CAAI,IAAIE,CAAM;AAC1B;AAuBO,SAASS,EAASlB,GAAO;AAC9B,EAAAA,IAAQK,EAAeL,CAAK;AAC5B,QAAM;AAAA,IACJ,QAAAS;AAAA,EACJ,IAAMT,GACEmB,IAAIV,EAAO,CAAC,GACZW,IAAIX,EAAO,CAAC,IAAI,KAChBY,IAAIZ,EAAO,CAAC,IAAI,KAChBa,IAAIF,IAAI,KAAK,IAAIC,GAAG,IAAIA,CAAC,GACzBE,IAAI,CAACpB,GAAGqB,KAAKrB,IAAIgB,IAAI,MAAM,OAAOE,IAAIC,IAAI,KAAK,IAAI,KAAK,IAAIE,IAAI,GAAG,IAAIA,GAAG,CAAC,GAAG,EAAE;AACtF,MAAIjB,IAAO;AACX,QAAMkB,IAAM,CAAC,KAAK,MAAMF,EAAE,CAAC,IAAI,GAAG,GAAG,KAAK,MAAMA,EAAE,CAAC,IAAI,GAAG,GAAG,KAAK,MAAMA,EAAE,CAAC,IAAI,GAAG,CAAC;AACnF,SAAIvB,EAAM,SAAS,WACjBO,KAAQ,KACRkB,EAAI,KAAKhB,EAAO,CAAC,CAAC,IAEbQ,EAAe;AAAA,IACpB,MAAAV;AAAA,IACA,QAAQkB;AAAA,EACZ,CAAG;AACH;AASO,SAASC,EAAa1B,GAAO;AAClC,EAAAA,IAAQK,EAAeL,CAAK;AAC5B,MAAIyB,IAAMzB,EAAM,SAAS,SAASA,EAAM,SAAS,SAASK,EAAea,EAASlB,CAAK,CAAC,EAAE,SAASA,EAAM;AACzG,SAAAyB,IAAMA,EAAI,IAAI,CAAAZ,OACRb,EAAM,SAAS,YACjBa,KAAO,MAEFA,KAAO,UAAUA,IAAM,UAAUA,IAAM,SAAS,UAAU,IAClE,GAGM,QAAQ,SAASY,EAAI,CAAC,IAAI,SAASA,EAAI,CAAC,IAAI,SAASA,EAAI,CAAC,GAAG,QAAQ,CAAC,CAAC;AAChF;AAUO,SAASE,EAAiBC,GAAYC,GAAY;AACvD,QAAMC,IAAOJ,EAAaE,CAAU,GAC9BG,IAAOL,EAAaG,CAAU;AACpC,UAAQ,KAAK,IAAIC,GAAMC,CAAI,IAAI,SAAS,KAAK,IAAID,GAAMC,CAAI,IAAI;AACjE;AASO,SAASC,EAAMhC,GAAOL,GAAO;AAClC,SAAAK,IAAQK,EAAeL,CAAK,GAC5BL,IAAQD,EAAaC,CAAK,IACtBK,EAAM,SAAS,SAASA,EAAM,SAAS,WACzCA,EAAM,QAAQ,MAEZA,EAAM,SAAS,UACjBA,EAAM,OAAO,CAAC,IAAI,IAAIL,CAAK,KAE3BK,EAAM,OAAO,CAAC,IAAIL,GAEbsB,EAAejB,CAAK;AAC7B;AACO,SAASiC,EAAkBjC,GAAOL,GAAOqB,GAAS;AACvD,MAAI;AACF,WAAOgB,EAAMhC,GAAOL,CAAK;AAAA,EAC3B,QAAgB;AAId,WAAOK;AAAA,EACT;AACF;AAQO,SAASkC,EAAOlC,GAAOmC,GAAa;AAGzC,MAFAnC,IAAQK,EAAeL,CAAK,GAC5BmC,IAAczC,EAAayC,CAAW,GAClCnC,EAAM,KAAK,SAAS,KAAK;AAC3B,IAAAA,EAAM,OAAO,CAAC,KAAK,IAAImC;AAAA,WACdnC,EAAM,KAAK,SAAS,KAAK,KAAKA,EAAM,KAAK,SAAS,OAAO;AAClE,aAASoC,IAAI,GAAGA,IAAI,GAAGA,KAAK;AAC1B,MAAApC,EAAM,OAAOoC,CAAC,KAAK,IAAID;AAG3B,SAAOlB,EAAejB,CAAK;AAC7B;AACO,SAASqC,EAAmBrC,GAAOmC,GAAanB,GAAS;AAC9D,MAAI;AACF,WAAOkB,EAAOlC,GAAOmC,CAAW;AAAA,EAClC,QAAgB;AAId,WAAOnC;AAAA,EACT;AACF;AAQO,SAASsC,EAAQtC,GAAOmC,GAAa;AAG1C,MAFAnC,IAAQK,EAAeL,CAAK,GAC5BmC,IAAczC,EAAayC,CAAW,GAClCnC,EAAM,KAAK,SAAS,KAAK;AAC3B,IAAAA,EAAM,OAAO,CAAC,MAAM,MAAMA,EAAM,OAAO,CAAC,KAAKmC;AAAA,WACpCnC,EAAM,KAAK,SAAS,KAAK;AAClC,aAASoC,IAAI,GAAGA,IAAI,GAAGA,KAAK;AAC1B,MAAApC,EAAM,OAAOoC,CAAC,MAAM,MAAMpC,EAAM,OAAOoC,CAAC,KAAKD;AAAA,WAEtCnC,EAAM,KAAK,SAAS,OAAO;AACpC,aAASoC,IAAI,GAAGA,IAAI,GAAGA,KAAK;AAC1B,MAAApC,EAAM,OAAOoC,CAAC,MAAM,IAAIpC,EAAM,OAAOoC,CAAC,KAAKD;AAG/C,SAAOlB,EAAejB,CAAK;AAC7B;AACO,SAASuC,EAAoBvC,GAAOmC,GAAanB,GAAS;AAC/D,MAAI;AACF,WAAOsB,EAAQtC,GAAOmC,CAAW;AAAA,EACnC,QAAgB;AAId,WAAOnC;AAAA,EACT;AACF;AASO,SAASwC,EAAUxC,GAAOmC,IAAc,MAAM;AACnD,SAAOT,EAAa1B,CAAK,IAAI,MAAMkC,EAAOlC,GAAOmC,CAAW,IAAIG,EAAQtC,GAAOmC,CAAW;AAC5F;AACO,SAASM,EAAsBzC,GAAOmC,GAAanB,GAAS;AACjE,MAAI;AACF,WAAOwB,EAAUxC,GAAOmC,CAAW;AAAA,EACrC,QAAgB;AAId,WAAOnC;AAAA,EACT;AACF;","x_google_ignoreList":[0]}
+{"version":3,"file":"ui-components.es56.js","sources":["../src/components/GenomeSearch/queries.ts"],"sourcesContent":["import { GeneResponse, GenomeSearchProps } from \"./types\";\n\nexport const SNP_AUTOCOMPLETE_QUERY = `\n  query suggestions($assembly: String!, $snpid: String!) {\n      snpAutocompleteQuery(assembly: $assembly, snpid: $snpid) {\n          id\n          coordinates {\n              chromosome\n              start\n              end\n          }\n      }\n  }\n`;\n\nexport const GENE_AUTOCOMPLETE_QUERY = `\n  query Genes(\n      $id: [String]\n      $name: [String]\n      $strand: String\n      $chromosome: String\n      $start: Int\n      $end: Int\n      $gene_type: String\n      $havana_id: String\n      $name_prefix: [String!]\n      $limit: Int\n      $assembly: String!\n      $version: Int\n  ) {\n      gene(\n          id: $id\n          name: $name\n          strand: $strand\n          chromosome: $chromosome\n          start: $start\n          end: $end\n          gene_type: $gene_type\n          havana_id: $havana_id\n          name_prefix: $name_prefix\n          limit: $limit\n          assembly: $assembly\n          orderby: \"name\"\n          version: $version\n      ) {\n          id\n          name\n          coordinates {\n              chromosome\n              start\n              end\n          }\n      }\n  }\n`;\n\nexport const ICRE_AUTOCOMPLETE_QUERY = `\n  query iCREQuery($accession_prefix: [String!], $limit: Int) {\n      iCREQuery(accession_prefix: $accession_prefix, limit: $limit) {\n          rdhs\n          accession\n          celltypes\n          coordinates {\n              start\n              end\n              chromosome\n          }\n      }\n  }\n`;\n\nexport const CCRE_AUTOCOMPLETE_QUERY = `\n  query cCREAutocompleteQuery(\n    $accession_prefix: [String!]\n    $assembly: String!\n    $includeiCREs: Boolean\n    $limit: Int\n  ) {\n    cCREAutocompleteQuery(\n      includeiCREs: $includeiCREs\n      assembly: $assembly\n      limit: $limit\n      accession_prefix: $accession_prefix\n    ) {\n      accession\n      isiCRE\n      coordinates {\n        chromosome\n        start\n        end\n      }\n    }\n  }\n`;\n\nexport const LEGACY_CCRE_QUERY = `\n  query getv2v3CcreMapping($accessions: [String], $assembly: String!) {\n    ccreMappings: getv2cCREMappings(\n      v2_accession: $accessions\n      assembly: $assembly\n    ) {\n      input: v2_accession\n      input_latest_previous_version: ccre_version\n      input_region: v2_region\n      v4_match_or_intersecting: v4_accession\n      v4_region\n    }\n  }\n`\n\nexport const GWAS_AUTOCOMPLETE_QUERY = `\nquery getGWASStudyMetadata($studyid: [String], $limit: Int, $studyname_prefix: [String], $parent_terms: [String]){\n    getGWASStudiesMetadata(studyid: $studyid, limit: $limit, parent_terms: $parent_terms, studyname_prefix: $studyname_prefix )\n    {\n        studyid\n        author\n        disease_trait\n        has_enrichment_info\n        population\n        parent_terms\n        total_ld_blocks\n        ld_blocks_overlapping_ccres\n        overlapping_ccres\n    }\n}\n`;\n\nexport const getICREs = async (value: string, limit: number, signal?: AbortSignal) => {\n  const response = await fetch(\"https://screen.api.wenglab.org/graphql\", {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: ICRE_AUTOCOMPLETE_QUERY,\n      variables: {\n        accession_prefix: [value],\n        limit: limit,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getCCREs = async (value: string, assembly: GenomeSearchProps[\"assembly\"], limit: number, showiCREFlag: boolean, signal?: AbortSignal) => {\n  const response = await fetch(\"https://screen.api.wenglab.org/graphql\", {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: CCRE_AUTOCOMPLETE_QUERY,\n      variables: {\n        accession_prefix: [value],\n        assembly: assembly.toLowerCase(),\n        limit: limit,\n        includeiCREs: showiCREFlag,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getLegacyCCREs = async (value: string, assembly: GenomeSearchProps[\"assembly\"], signal?: AbortSignal) => {\n  const response = await fetch(\"https://screen.api.wenglab.org/graphql\", {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: LEGACY_CCRE_QUERY,\n      variables: {\n        accessions: [value],\n        assembly,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getGenes = async (\n  value: string,\n  assembly: GenomeSearchProps[\"assembly\"],\n  limit: number,\n  geneVersions: GenomeSearchProps[\"geneVersion\"],\n  signal?: AbortSignal\n) => {\n  let versions = geneVersions\n    ? typeof geneVersions === \"number\"\n      ? [geneVersions]\n      : geneVersions\n    : [assembly === \"GRCh38\" ? 40 : 25];\n\n  // sort versions from high to low (prioritize newest versions in map)\n  versions = versions.sort((a, b) => b - a);\n\n  // Fetch genes for all versions\n  const versionResults = await Promise.all(\n    versions.map((version) =>\n      fetch(\"https://screen.api.wenglab.org/graphql\", {\n        method: \"POST\",\n        body: JSON.stringify({\n          query: GENE_AUTOCOMPLETE_QUERY,\n          variables: {\n            assembly: assembly.toLowerCase(),\n            name_prefix: value,\n            version: version,\n            limit: limit,\n          },\n        }),\n        headers: { \"Content-Type\": \"application/json\" },\n        signal,\n      }).then((res) => res.json())\n    )\n  );\n\n  // Combine and deduplicate results\n  const geneMap = new Map<string, { gene: any; versions: { id: string; version: number }[] }>();\n\n  versionResults.forEach((result, idx) => {\n    const genes = result.data.gene || [];\n    genes.forEach((gene: any) => {\n      if (!geneMap.has(gene.name)) {\n        geneMap.set(gene.name, { gene, versions: [{ id: gene.id, version: versions[idx] }] });\n      } else {\n        // if gene already exists, just add legacy versions to list.\n        const existing = geneMap.get(gene.name)!;\n        existing.versions.push({ id: gene.id, version: versions[idx] });\n      }\n    });\n  });\n\n  // Convert map to array and fetch descriptions\n  const out = await Promise.all(\n    Array.from(geneMap.values()).map(async ({ gene, versions }) => {\n      const description = await getDescription(gene.name);\n      return {\n        ...gene,\n        description: `${toTitleCase(description || gene.name)}`,\n        versions,\n      };\n    })\n  );\n\n  return out;\n};\nconst toTitleCase = (str: string) =>\n  str\n    .split(\" \")\n    .map((word) => word.charAt(0).toUpperCase() + word.slice(1))\n    .join(\" \");\n\nasync function getDescription(name: string): Promise<string | null> {\n  const response = await fetch(\n    \"https://clinicaltables.nlm.nih.gov/api/ncbi_genes/v3/search?authenticity_token=&terms=\" + name.toUpperCase()\n  );\n  const data = await response.json();\n  const matches = data[3] && data[3].filter((x: string[]) => x[3] === name.toUpperCase());\n  return matches && matches.length >= 1 ? matches[0][4] : null;\n}\n\nexport const getSNPs = async (value: string, assembly: GenomeSearchProps[\"assembly\"], limit: number, signal?: AbortSignal) => {\n  const response = await fetch(\"https://screen.api.wenglab.org/graphql\", {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: SNP_AUTOCOMPLETE_QUERY,\n      variables: {\n        assembly: assembly.toLowerCase(),\n        snpid: value,\n        limit: limit,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n  return response.json();\n};\n\nexport const getStudys = async (value: string, limit: number, signal?: AbortSignal) => {\n  const response = await fetch(\"https://screen.api.wenglab.org/graphql\", {\n    method: \"POST\",\n    body: JSON.stringify({\n      query: GWAS_AUTOCOMPLETE_QUERY,\n      variables: {\n        studyname_prefix: [value],\n        limit,\n      },\n    }),\n    headers: { \"Content-Type\": \"application/json\" },\n    signal,\n  });\n\n  return response.json();\n};\n"],"names":["SNP_AUTOCOMPLETE_QUERY","GENE_AUTOCOMPLETE_QUERY","ICRE_AUTOCOMPLETE_QUERY","CCRE_AUTOCOMPLETE_QUERY","LEGACY_CCRE_QUERY","GWAS_AUTOCOMPLETE_QUERY","getICREs","value","limit","signal","fetch","method","body","JSON","stringify","query","variables","accession_prefix","headers","json","getCCREs","assembly","showiCREFlag","toLowerCase","includeiCREs","getLegacyCCREs","accessions","getGenes","geneVersions","versions","sort","a","b","versionResults","Promise","all","map","version","name_prefix","then","res","geneMap","Map","forEach","result","idx","genes","data","gene","has","name","get","push","id","set","Array","from","values","description","getDescription","toTitleCase","str","split","word","charAt","toUpperCase","slice","join","matches","filter","x","length","getSNPs","snpid","getStudys","studyname_prefix"],"mappings":"AAEO,MAAMA,IAAyB;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,GAazBC,IAA0B;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,GAyC1BC,IAA0B;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,GAe1BC,IAA0B;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,GAwB1BC,IAAoB;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,GAepBC,IAA0B;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,GAiB1BC,IAAW,OAAOC,GAAeC,GAAeC,OAC1C,MAAMC,MAAM,0CAA0C;AAAA,EACrEC,QAAQ;AAAA,EACRC,MAAMC,KAAKC,UAAU;AAAA,IACnBC,OAAOb;AAAAA,IACPc,WAAW;AAAA,MACTC,kBAAkB,CAACV,CAAK;AAAA,MACxBC,OAAAA;AAAAA,IAAAA;AAAAA,EACF,CACD;AAAA,EACDU,SAAS;AAAA,IAAE,gBAAgB;AAAA,EAAA;AAAA,EAC3BT,QAAAA;AAAAA,CACD,GACeU,KAAAA,GAGLC,IAAW,OAAOb,GAAec,GAAyCb,GAAec,GAAuBb,OAC1G,MAAMC,MAAM,0CAA0C;AAAA,EACrEC,QAAQ;AAAA,EACRC,MAAMC,KAAKC,UAAU;AAAA,IACnBC,OAAOZ;AAAAA,IACPa,WAAW;AAAA,MACTC,kBAAkB,CAACV,CAAK;AAAA,MACxBc,UAAUA,EAASE,YAAAA;AAAAA,MACnBf,OAAAA;AAAAA,MACAgB,cAAcF;AAAAA,IAAAA;AAAAA,EAChB,CACD;AAAA,EACDJ,SAAS;AAAA,IAAE,gBAAgB;AAAA,EAAA;AAAA,EAC3BT,QAAAA;AAAAA,CACD,GACeU,KAAAA,GAGLM,IAAiB,OAAOlB,GAAec,GAAyCZ,OAC1E,MAAMC,MAAM,0CAA0C;AAAA,EACrEC,QAAQ;AAAA,EACRC,MAAMC,KAAKC,UAAU;AAAA,IACnBC,OAAOX;AAAAA,IACPY,WAAW;AAAA,MACTU,YAAY,CAACnB,CAAK;AAAA,MAClBc,UAAAA;AAAAA,IAAAA;AAAAA,EACF,CACD;AAAA,EACDH,SAAS;AAAA,IAAE,gBAAgB;AAAA,EAAA;AAAA,EAC3BT,QAAAA;AAAAA,CACD,GACeU,KAAAA,GAGLQ,IAAW,OACtBpB,GACAc,GACAb,GACAoB,GACAnB,MACG;AACH,MAAIoB,IAAWD,IACX,OAAOA,KAAiB,WACtB,CAACA,CAAY,IACbA,IACF,CAACP,MAAa,WAAW,KAAK,EAAE;AAGpCQ,EAAAA,IAAWA,EAASC,KAAK,CAACC,GAAGC,MAAMA,IAAID,CAAC;AAGxC,QAAME,IAAiB,MAAMC,QAAQC,IACnCN,EAASO,IAAKC,CAAAA,MACZ3B,MAAM,0CAA0C;AAAA,IAC9CC,QAAQ;AAAA,IACRC,MAAMC,KAAKC,UAAU;AAAA,MACnBC,OAAOd;AAAAA,MACPe,WAAW;AAAA,QACTK,UAAUA,EAASE,YAAAA;AAAAA,QACnBe,aAAa/B;AAAAA,QACb8B,SAAAA;AAAAA,QACA7B,OAAAA;AAAAA,MAAAA;AAAAA,IACF,CACD;AAAA,IACDU,SAAS;AAAA,MAAE,gBAAgB;AAAA,IAAA;AAAA,IAC3BT,QAAAA;AAAAA,EAAAA,CACD,EAAE8B,KAAMC,CAAAA,MAAQA,EAAIrB,KAAAA,CAAM,CAC7B,CACF,GAGMsB,wBAAcC,IAAAA;AAEpBT,SAAAA,EAAeU,QAAQ,CAACC,GAAQC,MAAQ;AAEtCC,KADcF,EAAOG,KAAKC,QAAQ,CAAA,GAC5BL,QAAQ,CAACK,MAAc;AAC3B,MAAKP,EAAQQ,IAAID,EAAKE,IAAI,IAIPT,EAAQU,IAAIH,EAAKE,IAAI,EAC7BrB,SAASuB,KAAK;AAAA,QAAEC,IAAIL,EAAKK;AAAAA,QAAIhB,SAASR,EAASgB,CAAG;AAAA,MAAA,CAAG,IAJ9DJ,EAAQa,IAAIN,EAAKE,MAAM;AAAA,QAAEF,MAAAA;AAAAA,QAAMnB,UAAU,CAAC;AAAA,UAAEwB,IAAIL,EAAKK;AAAAA,UAAIhB,SAASR,EAASgB,CAAG;AAAA,QAAA,CAAG;AAAA,MAAA,CAAG;AAAA,IAMxF,CAAC;AAAA,EACH,CAAC,GAGW,MAAMX,QAAQC,IACxBoB,MAAMC,KAAKf,EAAQgB,OAAAA,CAAQ,EAAErB,IAAI,OAAO;AAAA,IAAEY,MAAAA;AAAAA,IAAMnB,UAAAA;AAAAA,EAAAA,MAAe;AAC7D,UAAM6B,IAAc,MAAMC,EAAeX,EAAKE,IAAI;AAClD,WAAO;AAAA,MACL,GAAGF;AAAAA,MACHU,aAAa,GAAGE,EAAYF,KAAeV,EAAKE,IAAI,CAAC;AAAA,MACrDrB,UAAAA;AAAAA,IAAAA;AAAAA,EAEJ,CAAC,CACH;AAGF,GACM+B,IAAcA,CAACC,MACnBA,EACGC,MAAM,GAAG,EACT1B,IAAK2B,CAAAA,MAASA,EAAKC,OAAO,CAAC,EAAEC,gBAAgBF,EAAKG,MAAM,CAAC,CAAC,EAC1DC,KAAK,GAAG;AAEb,eAAeR,EAAeT,GAAsC;AAIlE,QAAMH,IAAO,OAHI,MAAMrC,MACrB,2FAA2FwC,EAAKe,aAClG,GAC4B9C,KAAAA,GACtBiD,IAAUrB,EAAK,CAAC,KAAKA,EAAK,CAAC,EAAEsB,OAAO,CAACC,MAAgBA,EAAE,CAAC,MAAMpB,EAAKe,aAAa;AACtF,SAAOG,KAAWA,EAAQG,UAAU,IAAIH,EAAQ,CAAC,EAAE,CAAC,IAAI;AAC1D;AAEO,MAAMI,IAAU,OAAOjE,GAAec,GAAyCb,GAAeC,OAClF,MAAMC,MAAM,0CAA0C;AAAA,EACrEC,QAAQ;AAAA,EACRC,MAAMC,KAAKC,UAAU;AAAA,IACnBC,OAAOf;AAAAA,IACPgB,WAAW;AAAA,MACTK,UAAUA,EAASE,YAAAA;AAAAA,MACnBkD,OAAOlE;AAAAA,MACPC,OAAAA;AAAAA,IAAAA;AAAAA,EACF,CACD;AAAA,EACDU,SAAS;AAAA,IAAE,gBAAgB;AAAA,EAAA;AAAA,EAC3BT,QAAAA;AAAAA,CACD,GACeU,KAAAA,GAGLuD,IAAY,OAAOnE,GAAeC,GAAeC,OAC3C,MAAMC,MAAM,0CAA0C;AAAA,EACrEC,QAAQ;AAAA,EACRC,MAAMC,KAAKC,UAAU;AAAA,IACnBC,OAAOV;AAAAA,IACPW,WAAW;AAAA,MACT2D,kBAAkB,CAACpE,CAAK;AAAA,MACxBC,OAAAA;AAAAA,IAAAA;AAAAA,EACF,CACD;AAAA,EACDU,SAAS;AAAA,IAAE,gBAAgB;AAAA,EAAA;AAAA,EAC3BT,QAAAA;AAAAA,CACD,GAEeU,KAAAA;"}

package/dist/ui-components.es59.js

@@ -1,4 +1,4 @@
-import { __exports as e } from "./ui-components.es75.js";
+import { __exports as e } from "./ui-components.es78.js";
 /**
  * @license React
  * react-jsx-runtime.production.js

package/dist/ui-components.es6.js

@@ -1,12 +1,12 @@
-import { j as _ } from "./ui-components.es12.js";
-import { capitalize as Z } from "@mui/material";
-import j from "./ui-components.es4.js";
-import { columns as D } from "./ui-components.es9.js";
-import { useEncodeBiosampleData as I } from "./ui-components.es10.js";
-import { useState as G, useEffect as w } from "react";
-import { useGridApiRef as N, gridFilteredSortedRowEntriesSelector as q, isAutogeneratedRow as H } from "@mui/x-data-grid-premium";
-import { DownloadContext as O } from "./ui-components.es22.js";
-const P = {
+import { j as S } from "./ui-components.es12.js";
+import { capitalize as D } from "@mui/material";
+import I from "./ui-components.es4.js";
+import { columns as G } from "./ui-components.es9.js";
+import { useEncodeBiosampleData as N } from "./ui-components.es10.js";
+import { useRef as O, useState as q, useEffect as H } from "react";
+import { useGridApiRef as P, gridFilteredSortedRowEntriesSelector as z, isAutogeneratedRow as L } from "@mui/x-data-grid-premium";
+import { DownloadContext as V } from "./ui-components.es52.js";
+const W = {
   rowGrouping: {
     model: ["ontology"]
   },
@@ -56,98 +56,107 @@ const P = {
       quickFilterExcludeHiddenColumns: !1
     }
   }
-}, z = {
+}, $ = {
   leafField: "displayname",
   headerName: "Tissue/Biosample",
   maxWidth: 400,
   display: "flex",
-  valueFormatter: (e) => Z(e)
-}, h = (e, l) => {
-  if (!e.current) return new Set(l);
-  const c = q(e).filter((s) => H(s.model)).filter((s) => e.current?.getRowGroupChildren({
+  valueFormatter: (o) => D(o)
+}, R = (o, l) => {
+  if (!o.current) return new Set(l);
+  const d = z(o).filter((s) => L(s.model)).filter((s) => o.current?.getRowGroupChildren({
     groupId: s.id,
     applyFiltering: !0
-  })?.every((d) => l?.includes(d))).map((s) => s.id);
-  return /* @__PURE__ */ new Set([...l, ...c]);
-}, L = (e, l, n) => {
-  if (!l || !e.current) return;
-  const a = {
+  })?.every((f) => l?.includes(f))).map((s) => s.id);
+  return /* @__PURE__ */ new Set([...l, ...d]);
+}, J = (o, l, i) => {
+  if (!l || !o.current) return;
+  const r = {
     type: "include",
-    ids: h(e, l)
+    ids: R(o, l)
   };
-  n(a);
+  i(r);
 };
-function Y(e) {
+function se(o) {
   const {
     data: l,
-    loading: n,
-    error: a
-  } = I({
-    assembly: e.assembly,
-    skip: e.rows !== void 0
+    loading: i,
+    error: r
+  } = N({
+    assembly: o.assembly,
+    skip: o.rows !== void 0
   }), {
-    loading: c,
+    loading: d,
     error: s,
-    assembly: S,
+    assembly: y,
     //custom added prop
-    rows: f = l ?? [],
-    prefilterBiosamples: d = () => !0,
+    rows: u = l ?? [],
+    prefilterBiosamples: f = () => !0,
     //custom added prop
-    columns: x = D,
-    label: R = "Biosamples",
-    downloadFileName: b = "Biosamples",
-    initialState: y = P,
-    onSelectionChange: C = (o) => null,
+    columns: x = G,
+    label: b = "Biosamples",
+    downloadFileName: C = "Biosamples",
+    initialState: M = W,
+    onSelectionChange: k = (e) => null,
     //custom added prop
-    onRowSelectionModelChange: u,
+    onRowSelectionModelChange: m,
     //have to extract here or else overrides to it would break the onSelectionChange functionality
-    onDownload: M,
+    onDownload: v,
     //custom added prop for tracking downloads
-    apiRef: k,
+    apiRef: A,
     selected: t = void 0,
-    getRowId: m = (o) => o.name,
-    ...v
-  } = e, E = N(), i = k ?? E, p = f.filter(d), A = (o, T) => {
-    u && u(o, T), C(p.filter((B) => o.ids.has(m(B))));
-  }, F = x.map((o) => ({
-    ...o,
+    onReady: E,
+    getRowId: p = (e) => e.name,
+    ...F
+  } = o, g = O(t);
+  g.current = t;
+  const T = P(), _ = A ?? T, h = u.filter(f), B = (e, a) => {
+    m && m(e, a), k(h.filter((n) => e.ids.has(p(n))));
+  }, Z = x.map((e) => ({
+    ...e,
     display: "flex"
-  })), [r, g] = G(void 0);
-  return w(() => {
+  })), [c, w] = q(void 0);
+  H(() => {
     if (!t) return;
-    const o = {
+    const e = {
       type: "include",
-      ids: h(i, t)
+      ids: R(_, t)
     };
-    (!r || !(r.ids.isSubsetOf(o.ids) && o.ids.isSubsetOf(r.ids))) && g(o);
-  }, [t]), w(() => i.current?.subscribeEvent("filterModelChange", () => {
-    L(i, t, g);
-  }), [i, t]), /* @__PURE__ */ _.jsx(O.Provider, { value: {
-    onDownload: M
-  }, children: /* @__PURE__ */ _.jsx(
-    j,
+    (!c || !(c.ids.isSubsetOf(e.ids) && e.ids.isSubsetOf(c.ids))) && w(e);
+  }, [t]);
+  const j = (e) => {
+    const a = e.current.subscribeEvent("filterModelChange", () => {
+      J(e, g.current, w);
+    }), n = E?.(e);
+    return n ? Array.isArray(n) ? [a, ...n] : [a, n] : a;
+  };
+  return /* @__PURE__ */ S.jsx(V.Provider, { value: {
+    onDownload: v
+  }, children: /* @__PURE__ */ S.jsx(
+    I,
     {
-      apiRef: i,
-      label: R,
-      downloadFileName: b,
-      rows: p,
-      columns: F,
-      loading: c || n,
-      error: s || a,
-      initialState: y,
-      rowSelectionModel: r,
-      groupingColDef: z,
-      getRowId: m,
+      apiRef: _,
+      label: b,
+      downloadFileName: C,
+      rows: h,
+      columns: Z,
+      loading: d || i,
+      error: s || r,
+      initialState: M,
+      rowSelectionModel: c,
+      groupingColDef: $,
+      getRowId: p,
       getRowHeight: () => "auto",
-      onRowSelectionModelChange: A,
+      onReady: j,
+      onRowSelectionModelChange: B,
       disableRowSelectionExcludeModel: !0,
       keepNonExistentRowsSelected: !0,
-      ...v
+      ...F
     }
   ) });
 }
 export {
-  Y as BiosampleTable,
-  P as initialTableState
+  se as BiosampleTable,
+  W as initialTableState
 };
 //# sourceMappingURL=ui-components.es6.js.map