@weng-lab/ui-components 1.3.2 → 2.0.0

package/dist/ui-components.es56.js

@@ -0,0 +1,146 @@
+import o from "./ui-components.es153.js";
+import b from "./ui-components.es169.js";
+function l(e, t = 0, n = 1) {
+  return process.env.NODE_ENV !== "production" && (e < t || e > n) && console.error(`MUI: The value provided ${e} is out of range [${t}, ${n}].`), b(e, t, n);
+}
+function v(e) {
+  e = e.slice(1);
+  const t = new RegExp(`.{1,${e.length >= 6 ? 2 : 1}}`, "g");
+  let n = e.match(t);
+  return n && n[0].length === 1 && (n = n.map((r) => r + r)), process.env.NODE_ENV !== "production" && e.length !== e.trim().length && console.error(`MUI: The color: "${e}" is invalid. Make sure the color input doesn't contain leading/trailing space.`), n ? `rgb${n.length === 4 ? "a" : ""}(${n.map((r, s) => s < 3 ? parseInt(r, 16) : Math.round(parseInt(r, 16) / 255 * 1e3) / 1e3).join(", ")})` : "";
+}
+function a(e) {
+  if (e.type)
+    return e;
+  if (e.charAt(0) === "#")
+    return a(v(e));
+  const t = e.indexOf("("), n = e.substring(0, t);
+  if (!["rgb", "rgba", "hsl", "hsla", "color"].includes(n))
+    throw new Error(process.env.NODE_ENV !== "production" ? `MUI: Unsupported \`${e}\` color.
+The following formats are supported: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color().` : o(9, e));
+  let r = e.substring(t + 1, e.length - 1), s;
+  if (n === "color") {
+    if (r = r.split(" "), s = r.shift(), r.length === 4 && r[3].charAt(0) === "/" && (r[3] = r[3].slice(1)), !["srgb", "display-p3", "a98-rgb", "prophoto-rgb", "rec-2020"].includes(s))
+      throw new Error(process.env.NODE_ENV !== "production" ? `MUI: unsupported \`${s}\` color space.
+The following color spaces are supported: srgb, display-p3, a98-rgb, prophoto-rgb, rec-2020.` : o(10, s));
+  } else
+    r = r.split(",");
+  return r = r.map((i) => parseFloat(i)), {
+    type: n,
+    values: r,
+    colorSpace: s
+  };
+}
+const $ = (e) => {
+  const t = a(e);
+  return t.values.slice(0, 3).map((n, r) => t.type.includes("hsl") && r !== 0 ? `${n}%` : n).join(" ");
+}, C = (e, t) => {
+  try {
+    return $(e);
+  } catch {
+    return t && process.env.NODE_ENV !== "production" && console.warn(t), e;
+  }
+};
+function u(e) {
+  const {
+    type: t,
+    colorSpace: n
+  } = e;
+  let {
+    values: r
+  } = e;
+  return t.includes("rgb") ? r = r.map((s, i) => i < 3 ? parseInt(s, 10) : s) : t.includes("hsl") && (r[1] = `${r[1]}%`, r[2] = `${r[2]}%`), t.includes("color") ? r = `${n} ${r.join(" ")}` : r = `${r.join(", ")}`, `${t}(${r})`;
+}
+function M(e) {
+  e = a(e);
+  const {
+    values: t
+  } = e, n = t[0], r = t[1] / 100, s = t[2] / 100, i = r * Math.min(s, 1 - s), p = (y, d = (y + n / 30) % 12) => s - i * Math.max(Math.min(d - 3, 9 - d, 1), -1);
+  let g = "rgb";
+  const f = [Math.round(p(0) * 255), Math.round(p(8) * 255), Math.round(p(4) * 255)];
+  return e.type === "hsla" && (g += "a", f.push(t[3])), u({
+    type: g,
+    values: f
+  });
+}
+function h(e) {
+  e = a(e);
+  let t = e.type === "hsl" || e.type === "hsla" ? a(M(e)).values : e.values;
+  return t = t.map((n) => (e.type !== "color" && (n /= 255), n <= 0.03928 ? n / 12.92 : ((n + 0.055) / 1.055) ** 2.4)), Number((0.2126 * t[0] + 0.7152 * t[1] + 0.0722 * t[2]).toFixed(3));
+}
+function I(e, t) {
+  const n = h(e), r = h(t);
+  return (Math.max(n, r) + 0.05) / (Math.min(n, r) + 0.05);
+}
+function E(e, t) {
+  return e = a(e), t = l(t), (e.type === "rgb" || e.type === "hsl") && (e.type += "a"), e.type === "color" ? e.values[3] = `/${t}` : e.values[3] = t, u(e);
+}
+function D(e, t, n) {
+  try {
+    return E(e, t);
+  } catch {
+    return e;
+  }
+}
+function c(e, t) {
+  if (e = a(e), t = l(t), e.type.includes("hsl"))
+    e.values[2] *= 1 - t;
+  else if (e.type.includes("rgb") || e.type.includes("color"))
+    for (let n = 0; n < 3; n += 1)
+      e.values[n] *= 1 - t;
+  return u(e);
+}
+function O(e, t, n) {
+  try {
+    return c(e, t);
+  } catch {
+    return e;
+  }
+}
+function m(e, t) {
+  if (e = a(e), t = l(t), e.type.includes("hsl"))
+    e.values[2] += (100 - e.values[2]) * t;
+  else if (e.type.includes("rgb"))
+    for (let n = 0; n < 3; n += 1)
+      e.values[n] += (255 - e.values[n]) * t;
+  else if (e.type.includes("color"))
+    for (let n = 0; n < 3; n += 1)
+      e.values[n] += (1 - e.values[n]) * t;
+  return u(e);
+}
+function T(e, t, n) {
+  try {
+    return m(e, t);
+  } catch {
+    return e;
+  }
+}
+function w(e, t = 0.15) {
+  return h(e) > 0.5 ? c(e, t) : m(e, t);
+}
+function x(e, t, n) {
+  try {
+    return w(e, t);
+  } catch {
+    return e;
+  }
+}
+export {
+  E as alpha,
+  $ as colorChannel,
+  c as darken,
+  a as decomposeColor,
+  w as emphasize,
+  I as getContrastRatio,
+  h as getLuminance,
+  v as hexToRgb,
+  M as hslToRgb,
+  m as lighten,
+  D as private_safeAlpha,
+  C as private_safeColorChannel,
+  O as private_safeDarken,
+  x as private_safeEmphasize,
+  T as private_safeLighten,
+  u as recomposeColor
+};
+//# sourceMappingURL=ui-components.es56.js.map

package/dist/ui-components.es56.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ui-components.es56.js","sources":["../../../node_modules/.pnpm/@mui+system@7.2.0_@emotion+react@11.14.0_@types+react@19.1.8_react@19.1.0__@emotion+sty_7f3319f308133a2adcfe5767030e6962/node_modules/@mui/system/esm/colorManipulator/colorManipulator.js"],"sourcesContent":["import _formatErrorMessage from \"@mui/utils/formatMuiErrorMessage\";\n/* eslint-disable @typescript-eslint/naming-convention */\nimport clamp from '@mui/utils/clamp';\n\n/**\n * Returns a number whose value is limited to the given range.\n * @param {number} value The value to be clamped\n * @param {number} min The lower boundary of the output range\n * @param {number} max The upper boundary of the output range\n * @returns {number} A number in the range [min, max]\n */\nfunction clampWrapper(value, min = 0, max = 1) {\n  if (process.env.NODE_ENV !== 'production') {\n    if (value < min || value > max) {\n      console.error(`MUI: The value provided ${value} is out of range [${min}, ${max}].`);\n    }\n  }\n  return clamp(value, min, max);\n}\n\n/**\n * Converts a color from CSS hex format to CSS rgb format.\n * @param {string} color - Hex color, i.e. #nnn or #nnnnnn\n * @returns {string} A CSS rgb color string\n */\nexport function hexToRgb(color) {\n  color = color.slice(1);\n  const re = new RegExp(`.{1,${color.length >= 6 ? 2 : 1}}`, 'g');\n  let colors = color.match(re);\n  if (colors && colors[0].length === 1) {\n    colors = colors.map(n => n + n);\n  }\n  if (process.env.NODE_ENV !== 'production') {\n    if (color.length !== color.trim().length) {\n      console.error(`MUI: The color: \"${color}\" is invalid. Make sure the color input doesn't contain leading/trailing space.`);\n    }\n  }\n  return colors ? `rgb${colors.length === 4 ? 'a' : ''}(${colors.map((n, index) => {\n    return index < 3 ? parseInt(n, 16) : Math.round(parseInt(n, 16) / 255 * 1000) / 1000;\n  }).join(', ')})` : '';\n}\nfunction intToHex(int) {\n  const hex = int.toString(16);\n  return hex.length === 1 ? `0${hex}` : hex;\n}\n\n/**\n * Returns an object with the type and values of a color.\n *\n * Note: Does not support rgb % values.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @returns {object} - A MUI color object: {type: string, values: number[]}\n */\nexport function decomposeColor(color) {\n  // Idempotent\n  if (color.type) {\n    return color;\n  }\n  if (color.charAt(0) === '#') {\n    return decomposeColor(hexToRgb(color));\n  }\n  const marker = color.indexOf('(');\n  const type = color.substring(0, marker);\n  if (!['rgb', 'rgba', 'hsl', 'hsla', 'color'].includes(type)) {\n    throw new Error(process.env.NODE_ENV !== \"production\" ? `MUI: Unsupported \\`${color}\\` color.\\n` + 'The following formats are supported: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color().' : _formatErrorMessage(9, color));\n  }\n  let values = color.substring(marker + 1, color.length - 1);\n  let colorSpace;\n  if (type === 'color') {\n    values = values.split(' ');\n    colorSpace = values.shift();\n    if (values.length === 4 && values[3].charAt(0) === '/') {\n      values[3] = values[3].slice(1);\n    }\n    if (!['srgb', 'display-p3', 'a98-rgb', 'prophoto-rgb', 'rec-2020'].includes(colorSpace)) {\n      throw new Error(process.env.NODE_ENV !== \"production\" ? `MUI: unsupported \\`${colorSpace}\\` color space.\\n` + 'The following color spaces are supported: srgb, display-p3, a98-rgb, prophoto-rgb, rec-2020.' : _formatErrorMessage(10, colorSpace));\n    }\n  } else {\n    values = values.split(',');\n  }\n  values = values.map(value => parseFloat(value));\n  return {\n    type,\n    values,\n    colorSpace\n  };\n}\n\n/**\n * Returns a channel created from the input color.\n *\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @returns {string} - The channel for the color, that can be used in rgba or hsla colors\n */\nexport const colorChannel = color => {\n  const decomposedColor = decomposeColor(color);\n  return decomposedColor.values.slice(0, 3).map((val, idx) => decomposedColor.type.includes('hsl') && idx !== 0 ? `${val}%` : val).join(' ');\n};\nexport const private_safeColorChannel = (color, warning) => {\n  try {\n    return colorChannel(color);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n};\n\n/**\n * Converts a color object with type and values to a string.\n * @param {object} color - Decomposed color\n * @param {string} color.type - One of: 'rgb', 'rgba', 'hsl', 'hsla', 'color'\n * @param {array} color.values - [n,n,n] or [n,n,n,n]\n * @returns {string} A CSS color string\n */\nexport function recomposeColor(color) {\n  const {\n    type,\n    colorSpace\n  } = color;\n  let {\n    values\n  } = color;\n  if (type.includes('rgb')) {\n    // Only convert the first 3 values to int (i.e. not alpha)\n    values = values.map((n, i) => i < 3 ? parseInt(n, 10) : n);\n  } else if (type.includes('hsl')) {\n    values[1] = `${values[1]}%`;\n    values[2] = `${values[2]}%`;\n  }\n  if (type.includes('color')) {\n    values = `${colorSpace} ${values.join(' ')}`;\n  } else {\n    values = `${values.join(', ')}`;\n  }\n  return `${type}(${values})`;\n}\n\n/**\n * Converts a color from CSS rgb format to CSS hex format.\n * @param {string} color - RGB color, i.e. rgb(n, n, n)\n * @returns {string} A CSS rgb color string, i.e. #nnnnnn\n */\nexport function rgbToHex(color) {\n  // Idempotent\n  if (color.startsWith('#')) {\n    return color;\n  }\n  const {\n    values\n  } = decomposeColor(color);\n  return `#${values.map((n, i) => intToHex(i === 3 ? Math.round(255 * n) : n)).join('')}`;\n}\n\n/**\n * Converts a color from hsl format to rgb format.\n * @param {string} color - HSL color values\n * @returns {string} rgb color values\n */\nexport function hslToRgb(color) {\n  color = decomposeColor(color);\n  const {\n    values\n  } = color;\n  const h = values[0];\n  const s = values[1] / 100;\n  const l = values[2] / 100;\n  const a = s * Math.min(l, 1 - l);\n  const f = (n, k = (n + h / 30) % 12) => l - a * Math.max(Math.min(k - 3, 9 - k, 1), -1);\n  let type = 'rgb';\n  const rgb = [Math.round(f(0) * 255), Math.round(f(8) * 255), Math.round(f(4) * 255)];\n  if (color.type === 'hsla') {\n    type += 'a';\n    rgb.push(values[3]);\n  }\n  return recomposeColor({\n    type,\n    values: rgb\n  });\n}\n/**\n * The relative brightness of any point in a color space,\n * normalized to 0 for darkest black and 1 for lightest white.\n *\n * Formula: https://www.w3.org/TR/WCAG20-TECHS/G17.html#G17-tests\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @returns {number} The relative brightness of the color in the range 0 - 1\n */\nexport function getLuminance(color) {\n  color = decomposeColor(color);\n  let rgb = color.type === 'hsl' || color.type === 'hsla' ? decomposeColor(hslToRgb(color)).values : color.values;\n  rgb = rgb.map(val => {\n    if (color.type !== 'color') {\n      val /= 255; // normalized\n    }\n    return val <= 0.03928 ? val / 12.92 : ((val + 0.055) / 1.055) ** 2.4;\n  });\n\n  // Truncate at 3 digits\n  return Number((0.2126 * rgb[0] + 0.7152 * rgb[1] + 0.0722 * rgb[2]).toFixed(3));\n}\n\n/**\n * Calculates the contrast ratio between two colors.\n *\n * Formula: https://www.w3.org/TR/WCAG20-TECHS/G17.html#G17-tests\n * @param {string} foreground - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla()\n * @param {string} background - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla()\n * @returns {number} A contrast ratio value in the range 0 - 21.\n */\nexport function getContrastRatio(foreground, background) {\n  const lumA = getLuminance(foreground);\n  const lumB = getLuminance(background);\n  return (Math.max(lumA, lumB) + 0.05) / (Math.min(lumA, lumB) + 0.05);\n}\n\n/**\n * Sets the absolute transparency of a color.\n * Any existing alpha values are overwritten.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} value - value to set the alpha channel to in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function alpha(color, value) {\n  color = decomposeColor(color);\n  value = clampWrapper(value);\n  if (color.type === 'rgb' || color.type === 'hsl') {\n    color.type += 'a';\n  }\n  if (color.type === 'color') {\n    color.values[3] = `/${value}`;\n  } else {\n    color.values[3] = value;\n  }\n  return recomposeColor(color);\n}\nexport function private_safeAlpha(color, value, warning) {\n  try {\n    return alpha(color, value);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Darkens a color.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} coefficient - multiplier in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function darken(color, coefficient) {\n  color = decomposeColor(color);\n  coefficient = clampWrapper(coefficient);\n  if (color.type.includes('hsl')) {\n    color.values[2] *= 1 - coefficient;\n  } else if (color.type.includes('rgb') || color.type.includes('color')) {\n    for (let i = 0; i < 3; i += 1) {\n      color.values[i] *= 1 - coefficient;\n    }\n  }\n  return recomposeColor(color);\n}\nexport function private_safeDarken(color, coefficient, warning) {\n  try {\n    return darken(color, coefficient);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Lightens a color.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} coefficient - multiplier in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function lighten(color, coefficient) {\n  color = decomposeColor(color);\n  coefficient = clampWrapper(coefficient);\n  if (color.type.includes('hsl')) {\n    color.values[2] += (100 - color.values[2]) * coefficient;\n  } else if (color.type.includes('rgb')) {\n    for (let i = 0; i < 3; i += 1) {\n      color.values[i] += (255 - color.values[i]) * coefficient;\n    }\n  } else if (color.type.includes('color')) {\n    for (let i = 0; i < 3; i += 1) {\n      color.values[i] += (1 - color.values[i]) * coefficient;\n    }\n  }\n  return recomposeColor(color);\n}\nexport function private_safeLighten(color, coefficient, warning) {\n  try {\n    return lighten(color, coefficient);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Darken or lighten a color, depending on its luminance.\n * Light colors are darkened, dark colors are lightened.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} coefficient=0.15 - multiplier in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function emphasize(color, coefficient = 0.15) {\n  return getLuminance(color) > 0.5 ? darken(color, coefficient) : lighten(color, coefficient);\n}\nexport function private_safeEmphasize(color, coefficient, warning) {\n  try {\n    return emphasize(color, coefficient);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Blend a transparent overlay color with a background color, resulting in a single\n * RGB color.\n * @param {string} background - CSS color\n * @param {string} overlay - CSS color\n * @param {number} opacity - Opacity multiplier in the range 0 - 1\n * @param {number} [gamma=1.0] - Gamma correction factor. For gamma-correct blending, 2.2 is usual.\n */\nexport function blend(background, overlay, opacity, gamma = 1.0) {\n  const blendChannel = (b, o) => Math.round((b ** (1 / gamma) * (1 - opacity) + o ** (1 / gamma) * opacity) ** gamma);\n  const backgroundColor = decomposeColor(background);\n  const overlayColor = decomposeColor(overlay);\n  const rgb = [blendChannel(backgroundColor.values[0], overlayColor.values[0]), blendChannel(backgroundColor.values[1], overlayColor.values[1]), blendChannel(backgroundColor.values[2], overlayColor.values[2])];\n  return recomposeColor({\n    type: 'rgb',\n    values: rgb\n  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package/dist/ui-components.es57.js

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+import { __module as e } from "./ui-components.es58.js";
+import { __require as t } from "./ui-components.es59.js";
+import { __require as i } from "./ui-components.es60.js";
+var r;
+function m() {
+  return r ? e.exports : (r = 1, process.env.NODE_ENV === "production" ? e.exports = t() : e.exports = i(), e.exports);
+}
+export {
+  m as __require
+};
+//# sourceMappingURL=ui-components.es57.js.map

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package/dist/ui-components.es58.js

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+var e = { exports: {} };
+export {
+  e as __module
+};
+//# sourceMappingURL=ui-components.es58.js.map

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+{"version":3,"file":"ui-components.es58.js","sources":[],"sourcesContent":[],"names":[],"mappings":";"}

package/dist/ui-components.es59.js

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+import { __exports as e } from "./ui-components.es75.js";
+/**
+ * @license React
+ * react-jsx-runtime.production.js
+ *
+ * Copyright (c) Meta Platforms, Inc. and affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+var s;
+function a() {
+  if (s) return e;
+  s = 1;
+  var i = Symbol.for("react.transitional.element"), _ = Symbol.for("react.fragment");
+  function o(l, r, t) {
+    var u = null;
+    if (t !== void 0 && (u = "" + t), r.key !== void 0 && (u = "" + r.key), "key" in r) {
+      t = {};
+      for (var n in r)
+        n !== "key" && (t[n] = r[n]);
+    } else t = r;
+    return r = t.ref, {
+      $$typeof: i,
+      type: l,
+      key: u,
+      ref: r !== void 0 ? r : null,
+      props: t
+    };
+  }
+  return e.Fragment = _, e.jsx = o, e.jsxs = o, e;
+}
+export {
+  a as __require
+};
+//# sourceMappingURL=ui-components.es59.js.map

package/dist/ui-components.es59.js.map

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package/dist/ui-components.es6.js

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+import { j as _ } from "./ui-components.es12.js";
+import { capitalize as Z } from "@mui/material";
+import j from "./ui-components.es4.js";
+import { columns as D } from "./ui-components.es9.js";
+import { useEncodeBiosampleData as I } from "./ui-components.es10.js";
+import { useState as G, useEffect as w } from "react";
+import { useGridApiRef as N, gridFilteredSortedRowEntriesSelector as q, isAutogeneratedRow as H } from "@mui/x-data-grid-premium";
+import { DownloadContext as O } from "./ui-components.es22.js";
+const P = {
+  rowGrouping: {
+    model: ["ontology"]
+  },
+  sorting: {
+    sortModel: [{
+      field: "collection",
+      sort: "asc"
+    }]
+  },
+  columns: {
+    columnVisibilityModel: {
+      displayname: !1,
+      //only false since it is used as "leafField" in groupingColDef
+      assays: !0,
+      ontology: !0,
+      sampleType: !1,
+      lifeStage: !1,
+      bedurl: !1,
+      bigbedurl: !1,
+      dnase_experiment_accession: !1,
+      dnase_file_accession: !1,
+      dnaseZ: !1,
+      dnase_signal_url: !1,
+      atac_experiment_accession: !1,
+      atac_file_accession: !1,
+      atacZ: !1,
+      atac_signal_url: !1,
+      h3k4me3_experiment_accession: !1,
+      h3k4me3_file_accession: !1,
+      h3k4me3Z: !1,
+      h3k4me3_signal_url: !1,
+      h3k27ac_experiment_accession: !1,
+      h3k27ac_file_accession: !1,
+      h3k27acZ: !1,
+      h3k27ac_signal_url: !1,
+      ctcf_experiment_accession: !1,
+      ctcf_file_accession: !1,
+      ctcfZ: !1,
+      ctcf_signal_url: !1,
+      chromhmm_url: !1,
+      rnaSeq: !1
+    }
+  },
+  filter: {
+    filterModel: {
+      items: [],
+      quickFilterExcludeHiddenColumns: !1
+    }
+  }
+}, z = {
+  leafField: "displayname",
+  headerName: "Tissue/Biosample",
+  maxWidth: 400,
+  display: "flex",
+  valueFormatter: (e) => Z(e)
+}, h = (e, l) => {
+  if (!e.current) return new Set(l);
+  const c = q(e).filter((s) => H(s.model)).filter((s) => e.current?.getRowGroupChildren({
+    groupId: s.id,
+    applyFiltering: !0
+  })?.every((d) => l?.includes(d))).map((s) => s.id);
+  return /* @__PURE__ */ new Set([...l, ...c]);
+}, L = (e, l, n) => {
+  if (!l || !e.current) return;
+  const a = {
+    type: "include",
+    ids: h(e, l)
+  };
+  n(a);
+};
+function Y(e) {
+  const {
+    data: l,
+    loading: n,
+    error: a
+  } = I({
+    assembly: e.assembly,
+    skip: e.rows !== void 0
+  }), {
+    loading: c,
+    error: s,
+    assembly: S,
+    //custom added prop
+    rows: f = l ?? [],
+    prefilterBiosamples: d = () => !0,
+    //custom added prop
+    columns: x = D,
+    label: R = "Biosamples",
+    downloadFileName: b = "Biosamples",
+    initialState: y = P,
+    onSelectionChange: C = (o) => null,
+    //custom added prop
+    onRowSelectionModelChange: u,
+    //have to extract here or else overrides to it would break the onSelectionChange functionality
+    onDownload: M,
+    //custom added prop for tracking downloads
+    apiRef: k,
+    selected: t = void 0,
+    getRowId: m = (o) => o.name,
+    ...v
+  } = e, E = N(), i = k ?? E, p = f.filter(d), A = (o, T) => {
+    u && u(o, T), C(p.filter((B) => o.ids.has(m(B))));
+  }, F = x.map((o) => ({
+    ...o,
+    display: "flex"
+  })), [r, g] = G(void 0);
+  return w(() => {
+    if (!t) return;
+    const o = {
+      type: "include",
+      ids: h(i, t)
+    };
+    (!r || !(r.ids.isSubsetOf(o.ids) && o.ids.isSubsetOf(r.ids))) && g(o);
+  }, [t]), w(() => i.current?.subscribeEvent("filterModelChange", () => {
+    L(i, t, g);
+  }), [i, t]), /* @__PURE__ */ _.jsx(O.Provider, { value: {
+    onDownload: M
+  }, children: /* @__PURE__ */ _.jsx(
+    j,
+    {
+      apiRef: i,
+      label: R,
+      downloadFileName: b,
+      rows: p,
+      columns: F,
+      loading: c || n,
+      error: s || a,
+      initialState: y,
+      rowSelectionModel: r,
+      groupingColDef: z,
+      getRowId: m,
+      getRowHeight: () => "auto",
+      onRowSelectionModelChange: A,
+      disableRowSelectionExcludeModel: !0,
+      keepNonExistentRowsSelected: !0,
+      ...v
+    }
+  ) });
+}
+export {
+  Y as BiosampleTable,
+  P as initialTableState
+};
+//# sourceMappingURL=ui-components.es6.js.map

package/dist/ui-components.es6.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ui-components.es6.js","sources":["../src/components/BiosampleTable/BiosampleTable.tsx"],"sourcesContent":["import { capitalize } from \"@mui/material\";\nimport Table from \"../Table/Table\";\nimport { columns as defaultCols } from \"./columns\";\nimport { BiosampleTableProps, EncodeBiosample } from \"./types\";\nimport { useEncodeBiosampleData } from \"./useEncodeBiosampleData\";\nimport { JSX, useEffect, useState } from \"react\";\nimport {\n  DataGridPremiumProps,\n  GridApiPremium,\n  GridColDef,\n  gridFilteredSortedRowEntriesSelector,\n  GridGroupingColDefOverride,\n  GridRowId,\n  GridRowSelectionModel,\n  isAutogeneratedRow,\n  useGridApiRef,\n} from \"@mui/x-data-grid-premium\";\nimport { DownloadContext } from \"./DownloadContext\";\nimport { GridInitialStatePremium } from \"@mui/x-data-grid-premium/models/gridStatePremium\";\n\n/**\n * This intentionally lists all columns in the visibility model (even visible cols) so that consumers can import and print it out to see all the keys\n * Can also use `allColsHidden` which is an object of all column fields set to false, which you can spread and then override the visible cols in initialState\n */\nexport const initialTableState = {\n  rowGrouping: { model: [\"ontology\"] },\n  sorting: { sortModel: [{ field: \"collection\", sort: \"asc\" } as const] },\n  columns: {\n    columnVisibilityModel: {\n      displayname: false, //only false since it is used as \"leafField\" in groupingColDef\n      assays: true,\n      ontology: true,\n      sampleType: false,\n      lifeStage: false,\n      bedurl: false,\n      bigbedurl: false,\n      dnase_experiment_accession: false,\n      dnase_file_accession: false,\n      dnaseZ: false,\n      dnase_signal_url: false,\n      atac_experiment_accession: false,\n      atac_file_accession: false,\n      atacZ: false,\n      atac_signal_url: false,\n      h3k4me3_experiment_accession: false,\n      h3k4me3_file_accession: false,\n      h3k4me3Z: false,\n      h3k4me3_signal_url: false,\n      h3k27ac_experiment_accession: false,\n      h3k27ac_file_accession: false,\n      h3k27acZ: false,\n      h3k27ac_signal_url: false,\n      ctcf_experiment_accession: false,\n      ctcf_file_accession: false,\n      ctcfZ: false,\n      ctcf_signal_url: false,\n      chromhmm_url: false,\n      rnaSeq: false,\n    },\n  },\n  filter: {\n    filterModel: {\n      items: [],\n      quickFilterExcludeHiddenColumns: false,\n    },\n  },\n} as const satisfies GridInitialStatePremium; \n\nconst groupingColDef: GridGroupingColDefOverride<any> = {\n  leafField: \"displayname\",\n  headerName: \"Tissue/Biosample\",\n  maxWidth: 400,\n  display: \"flex\",\n  valueFormatter: (value) => capitalize(value),\n} as const;\n\n/**\n *\n * @param apiRef\n * @param ids\n * This function is used to add autogenerated row Ids to the list of selected Ids if all children are selected.\n * It is needed so that select/unselect all checkboxes can work properly without passing in the autogenerated row IDs from outside the components.\n * It will add the grouping row ID only if all children are selected\n */\nconst addAutogeneratedRowIdsToChildren = (\n  apiRef: React.RefObject<GridApiPremium | null>,\n  selected: GridRowId[]\n): Set<GridRowId> => {\n  if (!apiRef.current) return new Set(selected)\n\n  const entries = gridFilteredSortedRowEntriesSelector(apiRef)\n  const autogeneratedRows = entries.filter((entry) =>\n    isAutogeneratedRow(entry.model)\n  );\n\n  const autogeneratedIdsToAdd = autogeneratedRows\n    .filter((row) => {\n      const children = apiRef.current?.getRowGroupChildren({ groupId: row.id, applyFiltering: true });\n      const allChildrenSelected = children?.every((id) => selected?.includes(id));\n      return allChildrenSelected;\n    })\n    .map((x) => x.id);\n\n  return new Set([...selected, ...autogeneratedIdsToAdd]);\n};\n\nconst getAndSetRowSelectionModel = (\n  apiRef: React.RefObject<GridApiPremium | null>,\n  selected: GridRowId[] | undefined,\n  setRowSelectionModel: React.Dispatch<React.SetStateAction<GridRowSelectionModel | undefined>>\n) => {\n  if (!selected || !apiRef.current) return undefined;\n  const newModel = { type: \"include\", ids: addAutogeneratedRowIdsToChildren(apiRef, selected) } as const;\n  setRowSelectionModel(newModel);\n};\n\nexport function BiosampleTable(props: BiosampleTableProps): JSX.Element {\n  const {\n    data: encodeSamples,\n    loading: encodeLoading,\n    error: encodeError,\n  } = useEncodeBiosampleData({ assembly: props.assembly, skip: props.rows !== undefined });\n\n  const {\n    loading,\n    error,\n    assembly, //custom added prop\n    rows = encodeSamples ?? [],\n    prefilterBiosamples = () => true, //custom added prop\n    columns = defaultCols,\n    label = \"Biosamples\",\n    downloadFileName = \"Biosamples\",\n    initialState = initialTableState,\n    onSelectionChange = (selected: EncodeBiosample[]) => null, //custom added prop\n    onRowSelectionModelChange, //have to extract here or else overrides to it would break the onSelectionChange functionality\n    onDownload, //custom added prop for tracking downloads\n    apiRef: externalApiRef,\n    selected = undefined,\n    getRowId = (x: EncodeBiosample) => x.name,\n    ...restProps\n  } = props;\n\n  const internalApiRef = useGridApiRef();\n  // prioritize using the provided apiRef if available, otherwise create a new one\n  const apiRef = externalApiRef ?? internalApiRef;\n\n  const internalRows = rows.filter(prefilterBiosamples);\n\n  const handleRowSelectionModelChange: DataGridPremiumProps[\"onRowSelectionModelChange\"] = (\n    rowSelectionModel,\n    details\n  ) => {\n    if (onRowSelectionModelChange) onRowSelectionModelChange(rowSelectionModel, details);\n    // we are passing disableRowSelectionExcludeModel, so should always be using \"include\"\n    onSelectionChange(internalRows.filter((row) => rowSelectionModel.ids.has(getRowId(row))));\n  };\n\n  const internalFlexColumns: GridColDef[] = columns.map((x) => ({ ...x, display: \"flex\" }));\n\n  const [rowSelectionModel, setRowSelectionModel] = useState<GridRowSelectionModel | undefined>(undefined);\n\n  useEffect(() => {\n    if (!selected) return undefined;\n    const newSelectionModel = { type: \"include\", ids: addAutogeneratedRowIdsToChildren(apiRef, selected) } as const;\n    if (\n      !rowSelectionModel ||\n      !(\n        rowSelectionModel.ids.isSubsetOf(newSelectionModel.ids) &&\n        newSelectionModel.ids.isSubsetOf(rowSelectionModel.ids)\n      )\n    ) {\n      //prevent infinite rerender\n      setRowSelectionModel(newSelectionModel);\n    }\n  }, [selected]);\n\n  // Update the added autogenerated rows when the filter model changes (or else group checkbox state is stale)\n  useEffect(() => {\n    return apiRef.current?.subscribeEvent(\"filterModelChange\", () => {\n      getAndSetRowSelectionModel(apiRef, selected, setRowSelectionModel);\n    });\n  }, [apiRef, selected]);\n\n  return (\n    <DownloadContext.Provider value={{ onDownload }}>\n      <Table\n        apiRef={apiRef}\n        label={label}\n        downloadFileName={downloadFileName}\n        rows={internalRows}\n        columns={internalFlexColumns}\n        loading={loading || encodeLoading}\n        error={error || encodeError}\n        initialState={initialState}\n        rowSelectionModel={rowSelectionModel}\n        groupingColDef={groupingColDef}\n        getRowId={getRowId}\n        getRowHeight={() => \"auto\"}\n        onRowSelectionModelChange={handleRowSelectionModelChange}\n        disableRowSelectionExcludeModel // forces only using \"include\" model for easier mapping\n        keepNonExistentRowsSelected\n        {...restProps}\n      />\n    </DownloadContext.Provider>\n  );\n}\n"],"names":["initialTableState","rowGrouping","model","sorting","sortModel","field","sort","columns","columnVisibilityModel","displayname","assays","ontology","sampleType","lifeStage","bedurl","bigbedurl","dnase_experiment_accession","dnase_file_accession","dnaseZ","dnase_signal_url","atac_experiment_accession","atac_file_accession","atacZ","atac_signal_url","h3k4me3_experiment_accession","h3k4me3_file_accession","h3k4me3Z","h3k4me3_signal_url","h3k27ac_experiment_accession","h3k27ac_file_accession","h3k27acZ","h3k27ac_signal_url","ctcf_experiment_accession","ctcf_file_accession","ctcfZ","ctcf_signal_url","chromhmm_url","rnaSeq","filter","filterModel","items","quickFilterExcludeHiddenColumns","groupingColDef","leafField","headerName","maxWidth","display","valueFormatter","value","capitalize","addAutogeneratedRowIdsToChildren","apiRef","selected","current","Set","autogeneratedIdsToAdd","gridFilteredSortedRowEntriesSelector","entry","isAutogeneratedRow","row","getRowGroupChildren","groupId","id","applyFiltering","every","includes","map","x","getAndSetRowSelectionModel","setRowSelectionModel","newModel","type","ids","BiosampleTable","props","data","encodeSamples","loading","encodeLoading","error","encodeError","useEncodeBiosampleData","assembly","skip","rows","undefined","prefilterBiosamples","defaultCols","label","downloadFileName","initialState","onSelectionChange","onRowSelectionModelChange","onDownload","externalApiRef","getRowId","name","restProps","internalApiRef","useGridApiRef","internalRows","handleRowSelectionModelChange","rowSelectionModel","details","has","internalFlexColumns","useState","useEffect","newSelectionModel","isSubsetOf","subscribeEvent","jsx","DownloadContext","Table"],"mappings":";;;;;;;;AAwBO,MAAMA,IAAoB;AAAA,EAC/BC,aAAa;AAAA,IAAEC,OAAO,CAAC,UAAU;AAAA,EAAA;AAAA,EACjCC,SAAS;AAAA,IAAEC,WAAW,CAAC;AAAA,MAAEC,OAAO;AAAA,MAAcC,MAAM;AAAA,IAAA,CAAgB;AAAA,EAAA;AAAA,EACpEC,SAAS;AAAA,IACPC,uBAAuB;AAAA,MACrBC,aAAa;AAAA;AAAA,MACbC,QAAQ;AAAA,MACRC,UAAU;AAAA,MACVC,YAAY;AAAA,MACZC,WAAW;AAAA,MACXC,QAAQ;AAAA,MACRC,WAAW;AAAA,MACXC,4BAA4B;AAAA,MAC5BC,sBAAsB;AAAA,MACtBC,QAAQ;AAAA,MACRC,kBAAkB;AAAA,MAClBC,2BAA2B;AAAA,MAC3BC,qBAAqB;AAAA,MACrBC,OAAO;AAAA,MACPC,iBAAiB;AAAA,MACjBC,8BAA8B;AAAA,MAC9BC,wBAAwB;AAAA,MACxBC,UAAU;AAAA,MACVC,oBAAoB;AAAA,MACpBC,8BAA8B;AAAA,MAC9BC,wBAAwB;AAAA,MACxBC,UAAU;AAAA,MACVC,oBAAoB;AAAA,MACpBC,2BAA2B;AAAA,MAC3BC,qBAAqB;AAAA,MACrBC,OAAO;AAAA,MACPC,iBAAiB;AAAA,MACjBC,cAAc;AAAA,MACdC,QAAQ;AAAA,IAAA;AAAA,EACV;AAAA,EAEFC,QAAQ;AAAA,IACNC,aAAa;AAAA,MACXC,OAAO,CAAA;AAAA,MACPC,iCAAiC;AAAA,IAAA;AAAA,EACnC;AAEJ,GAEMC,IAAkD;AAAA,EACtDC,WAAW;AAAA,EACXC,YAAY;AAAA,EACZC,UAAU;AAAA,EACVC,SAAS;AAAA,EACTC,gBAAiBC,CAAAA,MAAUC,EAAWD,CAAK;AAC7C,GAUME,IAAmCA,CACvCC,GACAC,MACmB;AACnB,MAAI,CAACD,EAAOE,QAAS,QAAO,IAAIC,IAAIF,CAAQ;AAO5C,QAAMG,IALUC,EAAqCL,CAAM,EACzBb,OAAQmB,OACxCC,EAAmBD,EAAMvD,KAAK,CAChC,EAGGoC,OAAQqB,CAAAA,MACUR,EAAOE,SAASO,oBAAoB;AAAA,IAAEC,SAASF,EAAIG;AAAAA,IAAIC,gBAAgB;AAAA,EAAA,CAAM,GACxDC,MAAOF,OAAOV,GAAUa,SAASH,CAAE,CAAC,CAE3E,EACAI,IAAKC,CAAAA,MAAMA,EAAEL,EAAE;AAElB,6BAAWR,IAAI,CAAC,GAAGF,GAAU,GAAGG,CAAqB,CAAC;AACxD,GAEMa,IAA6BA,CACjCjB,GACAC,GACAiB,MACG;AACH,MAAI,CAACjB,KAAY,CAACD,EAAOE,QAAS;AAClC,QAAMiB,IAAW;AAAA,IAAEC,MAAM;AAAA,IAAWC,KAAKtB,EAAiCC,GAAQC,CAAQ;AAAA,EAAA;AAC1FiB,EAAAA,EAAqBC,CAAQ;AAC/B;AAEO,SAASG,EAAeC,GAAyC;AACtE,QAAM;AAAA,IACJC,MAAMC;AAAAA,IACNC,SAASC;AAAAA,IACTC,OAAOC;AAAAA,EAAAA,IACLC,EAAuB;AAAA,IAAEC,UAAUR,EAAMQ;AAAAA,IAAUC,MAAMT,EAAMU,SAASC;AAAAA,EAAAA,CAAW,GAEjF;AAAA,IACJR,SAAAA;AAAAA,IACAE,OAAAA;AAAAA,IACAG,UAAAA;AAAAA;AAAAA,IACAE,MAAAA,IAAOR,KAAiB,CAAA;AAAA,IACxBU,qBAAAA,IAAsBA,MAAM;AAAA;AAAA,IAAA,SAC5B/E,IAAUgF;AAAAA,IACVC,OAAAA,IAAQ;AAAA,IACRC,kBAAAA,IAAmB;AAAA,IACnBC,cAAAA,IAAe1F;AAAAA,IACf2F,mBAAAA,IAAoBA,CAACvC,MAAgC;AAAA;AAAA,IACrDwC,2BAAAA;AAAAA;AAAAA,IACAC,YAAAA;AAAAA;AAAAA,IACA1C,QAAQ2C;AAAAA,IACR1C,UAAAA,IAAWiC;AAAAA,IACXU,UAAAA,IAAWA,CAAC5B,MAAuBA,EAAE6B;AAAAA,IACrC,GAAGC;AAAAA,EAAAA,IACDvB,GAEEwB,IAAiBC,EAAAA,GAEjBhD,IAAS2C,KAAkBI,GAE3BE,IAAehB,EAAK9C,OAAOgD,CAAmB,GAE9Ce,IAAmFA,CACvFC,GACAC,MACG;AACH,IAAIX,KAA2BA,EAA0BU,GAAmBC,CAAO,GAEnFZ,EAAkBS,EAAa9D,OAAQqB,CAAAA,MAAQ2C,EAAkB9B,IAAIgC,IAAIT,EAASpC,CAAG,CAAC,CAAC,CAAC;AAAA,EAC1F,GAEM8C,IAAoClG,EAAQ2D,IAAKC,CAAAA,OAAO;AAAA,IAAE,GAAGA;AAAAA,IAAGrB,SAAS;AAAA,EAAA,EAAS,GAElF,CAACwD,GAAmBjC,CAAoB,IAAIqC,EAA4CrB,MAAS;AAEvGsB,SAAAA,EAAU,MAAM;AACd,QAAI,CAACvD,EAAU;AACf,UAAMwD,IAAoB;AAAA,MAAErC,MAAM;AAAA,MAAWC,KAAKtB,EAAiCC,GAAQC,CAAQ;AAAA,IAAA;AACnG,KACE,CAACkD,KACD,EACEA,EAAkB9B,IAAIqC,WAAWD,EAAkBpC,GAAG,KACtDoC,EAAkBpC,IAAIqC,WAAWP,EAAkB9B,GAAG,OAIxDH,EAAqBuC,CAAiB;AAAA,EAE1C,GAAG,CAACxD,CAAQ,CAAC,GAGbuD,EAAU,MACDxD,EAAOE,SAASyD,eAAe,qBAAqB,MAAM;AAC/D1C,IAAAA,EAA2BjB,GAAQC,GAAUiB,CAAoB;AAAA,EACnE,CAAC,GACA,CAAClB,GAAQC,CAAQ,CAAC,GAGnB2D,gBAAAA,MAACC,EAAgB,UAAhB,EAAyB,OAAO;AAAA,IAAEnB,YAAAA;AAAAA,EAAAA,GACjC,UAAAkB,gBAAAA,EAAAA;AAAAA,IAACE;AAAA,IAAA;AAAA,MACC,QAAA9D;AAAA,MACA,OAAAqC;AAAA,MACA,kBAAAC;AAAA,MACA,MAAMW;AAAAA,MACN,SAASK;AAAAA,MACT,SAAS5B,KAAWC;AAAAA,MACpB,OAAOC,KAASC;AAAAA,MAChB,cAA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