@weng-lab/ui-components 1.0.3 → 1.0.5

package/dist/src/components/DataTable/datatable.d.ts

@@ -0,0 +1,6 @@
+import { DataTableProps } from './types';
+export declare function isNumeric(n: string): boolean;
+export declare function genericSort(a: any, b: any): number;
+declare const DataTable: <T extends object>(props: DataTableProps<T>) => import("react/jsx-runtime").JSX.Element;
+export default DataTable;
+//# sourceMappingURL=datatable.d.ts.map

package/dist/src/components/DataTable/datatable.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/components/DataTable/index.d.ts

@@ -0,0 +1,4 @@
+import { default as DataTable } from './datatable';
+export { DataTable };
+export type { DataTableColumn, DataTableProps, SortState } from './types';
+//# sourceMappingURL=index.d.ts.map

package/dist/src/components/DataTable/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/components/DataTable/reducer.d.ts

@@ -0,0 +1,3 @@
+import { DataTableAction, DataTableState } from './types';
+export declare function reducer<T>(previousState: DataTableState<T>, action: DataTableAction<T>): DataTableState<T>;
+//# sourceMappingURL=reducer.d.ts.map

package/dist/src/components/DataTable/reducer.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/components/DataTable/types.d.ts

@@ -0,0 +1,187 @@
+import { default as React } from 'react';
+export interface DataTableColumn<T> {
+    tooltip?: React.ReactNode;
+    header: string;
+    /**
+     * Use to render React.ReactNode in column header. Used instead of ```header``` if specified
+     *
+     * @example
+     * ```tsx
+     * HeaderRender: () => <Typography>Header Here</Typography>
+     * }
+     * ```
+     *
+     */
+    HeaderRender?: () => React.ReactNode;
+    value: (row: T) => string | number;
+    search?: (row: T) => boolean;
+    unsearchable?: boolean;
+    /**
+     * Use to render React.ReactNode for a column. Can be string | number | whatever else react can render
+     *
+     * @example
+     * ```tsx
+     * (row: T) => {
+     *  //You can use hooks here
+     *  return (
+     *    <CustomComponent>{row.whatever}</Typography>
+     *  )
+     * }
+     *
+     * ```
+     */
+    render?: (row: T) => React.ReactNode;
+    /**
+     * @deprecated use render instead.
+     * @todo remove this prop when new component library is up
+     */
+    FunctionalRender?: ((row: T) => React.JSX.Element);
+    sort?: (a: T, b: T) => number;
+    unsortable?: boolean;
+}
+type RGB = `rgb(${number}, ${number}, ${number})` | `rgb(${number},${number},${number})`;
+type RGBA = `rgba(${number}, ${number}, ${number}, ${number})` | `rgba(${number},${number},${number},${number})`;
+type HEX = `#${string}` | `# ${string}`;
+export interface DataTableProps<T> {
+    columns: DataTableColumn<T>[];
+    rows: T[];
+    /**
+     * Sets the number of items on each page.
+     * If one number specified, the rows per page selection is hidden.
+     * Specify an array to provide user-selectable options
+     *
+     * @default
+     * [5, 10, 25, 100]
+     *
+     */
+    itemsPerPage?: number | number[];
+    hidePageMenu?: boolean;
+    /**
+     * Allows passing all of the things React can render.
+     *
+     * @example
+     * ```
+     * "Title Here"
+     * ```
+     * or
+     * ```jsx
+     * <Typography onClick={handleClick}>Title Here</Typography>
+     * ```
+     *
+     * If passing a string will be wrapped as such:
+     * ```jsx
+     * <Typography
+     *  variant="h5"
+     *  noWrap
+     *  component="div"
+     *  sx={{
+     *    display: { xs: 'none', sm: 'block' },
+     *    fontWeight: 'normal',
+     *    color: `${props.headerColor ? props.headerColor.textColor : 'inherit'}`,
+     *  }}
+     * >
+     *  {props.tableTitle}
+     * </Typography>
+     * ```
+     */
+    tableTitle?: React.ReactNode;
+    selectable?: boolean;
+    searchable?: boolean;
+    search?: string;
+    emptyText?: string;
+    sortColumn?: number;
+    sortDescending?: boolean;
+    downloadFileName?: string;
+    noOfDefaultColumns?: number;
+    showMoreColumns?: boolean;
+    defaultColumnsToShow?: string[];
+    page?: number;
+    hideHeader?: boolean;
+    titleHoverInfo?: React.ReactNode;
+    headerColor?: {
+        backgroundColor: RGB | RGBA | HEX;
+        textColor: RGB | RGBA | HEX | 'inherit';
+    };
+    /**
+     * Note: This currently does not account for the size of the title or pagination element,
+     * sets max-height of the table header and body.
+     */
+    maxHeight?: number | string;
+    /**
+     * Reduced the amount of padding on table cells to make the table more compact.
+     */
+    dense?: boolean;
+    /**
+     * Highlights the row(s) matching the provided object(s). Use this in conjunction with
+     * onRowClick() and a state variable containing the current row(s) to highlight.
+     * Importantly, currently this only supports highlighting rows with the same order
+     * of key/value pairs. Matching but out-of-order row objects will not be highlighted.
+     */
+    highlighted?: T | T[];
+    /**
+     * Callback triggered whenever the displayed rows are changed. Will trigger on first load of initial rows.
+     */
+    onDisplayedRowsChange?: (newPage: number, displayedRows: T[]) => void;
+    onRowClick?: (row: T, i: number) => void;
+    /**
+     * @param rowObject The object representing the row
+     * @param rowIndex The index of the row as it's currently displayed
+     */
+    onRowMouseEnter?: (rowObject: T, rowIndex: number) => void;
+    /**
+   * @param rowObject The object representing the row
+   * @param rowIndex The index of the row as it's currently displayed
+   */
+    onRowMouseLeave?: (rowObject: T, rowIndex: number) => void;
+    /**
+     * @param cellValue The value of the cell
+     * @param cellRowIndex The index of the cell's row as it's currently displayed
+     * @param cellColIndex The index of the cell's column as it's currently displayed
+     */
+    onCellMouseEnter?: (cellValue: string | number, cellRowIndex: number, cellColIndex: number) => void;
+    /**
+     * @param cellValue The value of the cell
+     * @param cellRowIndex The index of the cell's row as it's currently displayed
+     * @param cellColIndex The index of the cell's column as it's currently displayed
+     */
+    onCellMouseLeave?: (cellValue: string | number, cellRowIndex: number, cellColIndex: number) => void;
+}
+export type DataTableState<T> = {
+    page: number;
+    filter?: string;
+    sort: SortState;
+    columns: DataTableColumn<T>[];
+    showAddColumnsModal: boolean;
+    mousedOver?: number;
+};
+export type SortState = {
+    asc: boolean;
+    column: number;
+};
+export type SearchChangedAction = {
+    type: "searchChanged";
+    value: string;
+};
+export type PageChangedAction = {
+    type: "pageChanged";
+    page: number;
+};
+export type SortChangedAction = {
+    type: "sortChanged";
+    sortColumn: number;
+};
+export type ModalChangedAction = {
+    type: "modalChanged";
+    showAddColumnsModal: boolean;
+};
+export type ColumnsChangedAction<T> = {
+    type: "columnsChanged";
+    columns: DataTableColumn<T>[];
+};
+export type MousedOverAction = {
+    type: "mousedOver";
+    index?: number;
+};
+export type DataTableAction<T> = SearchChangedAction | PageChangedAction | SortChangedAction | ModalChangedAction | ColumnsChangedAction<T> | MousedOverAction;
+export {};
+//# sourceMappingURL=types.d.ts.map

package/dist/src/components/DataTable/types.d.ts.map

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package/dist/src/components/GenomeSearch/GenomeSearch.d.ts

@@ -0,0 +1,4 @@
+import { GenomeSearchProps } from './types';
+declare function GenomeSearch(props: GenomeSearchProps): import("react/jsx-runtime").JSX.Element;
+export default GenomeSearch;
+//# sourceMappingURL=GenomeSearch.d.ts.map

package/dist/src/components/GenomeSearch/GenomeSearch.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/components/GenomeSearch/index.d.ts

@@ -0,0 +1,5 @@
+import { GenomeSearchProps, Result, Domain, ResultType } from './types';
+import { default as GenomeSearch } from './GenomeSearch';
+export { GenomeSearch };
+export type { GenomeSearchProps, Result, Domain, ResultType };
+//# sourceMappingURL=index.d.ts.map

package/dist/src/components/GenomeSearch/index.d.ts.map

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package/dist/src/components/GenomeSearch/queries.d.ts

@@ -0,0 +1,10 @@
+export declare const SNP_AUTOCOMPLETE_QUERY = "\n  query suggestions($assembly: String!, $snpid: String!) { \n      snpAutocompleteQuery(assembly: $assembly, snpid: $snpid) {\n          id\n          coordinates {\n              chromosome\n              start\n              end\n          }\n      }\n  }\n";
+export declare const GENE_AUTOCOMPLETE_QUERY = "\n  query Genes(\n      $id: [String]\n      $name: [String]\n      $strand: String\n      $chromosome: String\n      $start: Int\n      $end: Int\n      $gene_type: String\n      $havana_id: String\n      $name_prefix: [String!]\n      $limit: Int\n      $assembly: String!\n  ) {\n      gene(\n          id: $id\n          name: $name\n          strand: $strand\n          chromosome: $chromosome\n          start: $start\n          end: $end\n          gene_type: $gene_type\n          havana_id: $havana_id\n          name_prefix: $name_prefix\n          limit: $limit\n          assembly: $assembly\n          orderby: \"name\"\n      ) {\n          id\n          name\n          coordinates {\n              chromosome\n              start\n              end\n          }\n      }\n  }\n";
+export declare const RESOLVE_QUERY = "\n  query q(\n      $id: String!\n      $assembly: String!\n  ) {\n      resolve(\n          id: $id\n          assembly: $assembly\n      ) {\n          coordinates {\n              chromosome\n              start\n              end\n          }\n      }\n  }\n";
+export declare const ICRE_AUTOCOMPLETE_QUERY = "\n  query iCREQuery($accession_prefix: [String!], $limit: Int) {\n      iCREQuery(accession_prefix: $accession_prefix, limit: $limit) {\n          rdhs\n          accession\n          celltypes\n          coordinates {\n              start\n              end\n              chromosome\n          }\n      }\n  }\n";
+export declare const CCRE_AUTOCOMPLETE_QUERY = "\n  query cCREAutocompleteQuery(\n    $accession_prefix: [String!]\n    $assembly: String!\n    $includeiCREs: Boolean\n    $limit: Int\n  ) {\n    cCREAutocompleteQuery(\n      includeiCREs: $includeiCREs\n      assembly: $assembly\n      limit: $limit\n      accession_prefix: $accession_prefix\n    ) {    \n      accession\n      isiCRE\n      coordinates {\n        chromosome\n        start\n        end\n      }\n    }\n  }\n";
+export declare const getICREs: (value: string, limit: number) => Promise<any>;
+export declare const getCCREs: (value: string, assembly: string, limit: number, showiCREFlag: boolean) => Promise<any>;
+export declare const getGenes: (value: string, assembly: string, limit: number, geneVersion: number) => Promise<any[]>;
+export declare const getSNPs: (value: string, assembly: string, limit: number) => Promise<any>;
+//# sourceMappingURL=queries.d.ts.map

package/dist/src/components/GenomeSearch/queries.d.ts.map

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package/dist/src/components/GenomeSearch/types.d.ts

@@ -0,0 +1,68 @@
+import { AutocompleteProps, BoxProps, ButtonProps, TextFieldProps } from '@mui/material';
+export type GenomeSearchProps = Partial<AutocompleteProps<Result, false, true, false, React.ElementType>> & {
+    assembly: "GRCh38" | "mm10";
+    onSearchSubmit: (result: Result) => void;
+    defaultResults?: Result[];
+    showiCREFlag?: boolean;
+    geneVersion?: number;
+    queries: ResultType[];
+    geneLimit?: number;
+    snpLimit?: number;
+    icreLimit?: number;
+    ccreLimit?: number;
+    slotProps?: {
+        input?: Partial<TextFieldProps>;
+        button?: Partial<ButtonProps>;
+        box?: Partial<BoxProps>;
+    };
+    slots?: {
+        input?: React.ReactElement<TextFieldProps>;
+        button?: React.ReactElement<ButtonProps>;
+        box?: React.ReactElement<BoxProps>;
+    };
+};
+export type Domain = {
+    chromosome: string;
+    start: number;
+    end: number;
+};
+export type ResultType = "Gene" | "SNP" | "Coordinate" | "iCRE" | "cCRE";
+export type Result = {
+    title?: string;
+    description?: string;
+    type?: ResultType;
+    id?: string;
+    name?: string;
+    domain: Domain;
+};
+export interface SnpResponse {
+    id: string;
+    coordinates: {
+        chromosome: string;
+        start: number;
+        end: number;
+    };
+}
+export interface GeneResponse {
+    id: string;
+    name: string;
+    coordinates: {
+        chromosome: string;
+        start: number;
+        end: number;
+    };
+    description: string;
+}
+export interface ICREResponse {
+    accession: string;
+    coordinates: Domain;
+    celltypes: string[];
+    rdhs: string;
+}
+export interface CCREResponse {
+    accession: string;
+    coordinates: Domain;
+    celltypes: string[];
+    isiCRE: boolean;
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/src/components/GenomeSearch/types.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/components/GenomeSearch/utils.d.ts

@@ -0,0 +1,14 @@
+import { CCREResponse, GeneResponse, ICREResponse, Result, SnpResponse } from './types';
+/**
+ * Get the coordinates from a string input.
+ * @param input - The input string to search for coordinates
+ * @param assembly - The assembly to search for coordinates
+ * @returns An array of results with the coordinates
+ */
+export declare function getCoordinates(input: string, assembly: string): Result[];
+export declare function snpResultList(results: SnpResponse[], limit: number): Result[];
+export declare function geneResultList(results: GeneResponse[], limit: number): Result[];
+export declare function icreResultList(results: ICREResponse[], limit: number): Result[];
+export declare function ccreResultList(results: CCREResponse[], limit: number): Result[];
+export declare function isDomain(input: string): boolean;
+//# sourceMappingURL=utils.d.ts.map

package/dist/src/components/GenomeSearch/utils.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/components/RangeSlider/RangeSlider.d.ts

@@ -0,0 +1,15 @@
+import { default as React } from 'react';
+import { SliderProps as MuiSliderProps } from '@mui/material/Slider';
+export type SliderProps = MuiSliderProps & {
+    title: string;
+    width: number | string;
+    defaultStart?: number;
+    defaultEnd?: number;
+    minDistance?: number;
+    onSliderChange?: (value: number[]) => void;
+    onSliderChangeCommitted?: (value: number[]) => void;
+    value?: number[];
+};
+declare const RangeSlider: React.FC<SliderProps>;
+export default RangeSlider;
+//# sourceMappingURL=RangeSlider.d.ts.map

package/dist/src/components/RangeSlider/RangeSlider.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"RangeSlider.d.ts","sourceRoot":"","sources":["../../../../src/components/RangeSlider/RangeSlider.tsx"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAoB,MAAM,OAAO,CAAC;AAIzC,OAAO,EAAE,WAAW,IAAI,cAAc,EAAE,MAAM,sBAAsB,CAAC;AASrE,MAAM,MAAM,WAAW,GAAG,cAAc,GAAG;IACzC,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC;IACvB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,UAAU,CAAC,EAAE,MAAM,CAAC;IAEpB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,cAAc,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,IAAI,CAAC;IAC3C,uBAAuB,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,IAAI,CAAC;IACpD,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;CAClB,CAAC;AAMF,QAAA,MAAM,WAAW,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CA0MtC,CAAA;AAED,eAAe,WAAW,CAAC"}

package/dist/src/components/RangeSlider/index.d.ts

@@ -0,0 +1,4 @@
+import { default as RangeSlider, SliderProps } from './RangeSlider';
+export { RangeSlider };
+export type { SliderProps };
+//# sourceMappingURL=index.d.ts.map

package/dist/src/components/RangeSlider/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/components/RangeSlider/index.ts"],"names":[],"mappings":"AAAA,OAAO,WAAW,EAAE,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AACzD,OAAO,EAAE,WAAW,EAAE,CAAC;AACvB,YAAY,EAAE,WAAW,EAAE,CAAA"}

package/dist/src/components/Table/EmptyFallback.d.ts

@@ -0,0 +1,7 @@
+export type TableFallbackProps = {
+    message: string;
+    variant: "error" | "empty";
+};
+declare const TableFallback: ({ message, variant }: TableFallbackProps) => import("react/jsx-runtime").JSX.Element;
+export default TableFallback;
+//# sourceMappingURL=EmptyFallback.d.ts.map

package/dist/src/components/Table/EmptyFallback.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"EmptyFallback.d.ts","sourceRoot":"","sources":["../../../../src/components/Table/EmptyFallback.tsx"],"names":[],"mappings":"AAGA,MAAM,MAAM,kBAAkB,GAAG;IAC/B,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,OAAO,GAAG,OAAO,CAAC;CAC5B,CAAC;AAEF,QAAA,MAAM,aAAa,GAAI,sBAAsB,kBAAkB,4CAO9D,CAAC;AAEF,eAAe,aAAa,CAAC"}

package/dist/src/components/Table/Table.d.ts

@@ -0,0 +1,4 @@
+import { TableProps } from './types';
+declare const Table: (props: TableProps) => import("react/jsx-runtime").JSX.Element;
+export default Table;
+//# sourceMappingURL=Table.d.ts.map

package/dist/src/components/Table/Table.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Table.d.ts","sourceRoot":"","sources":["../../../../src/components/Table/Table.tsx"],"names":[],"mappings":"AAOA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AAErC,QAAA,MAAM,KAAK,GAAI,OAAO,UAAU,4CAuG/B,CAAC;AAEF,eAAe,KAAK,CAAC"}

package/dist/src/components/Table/index.d.ts

@@ -0,0 +1,4 @@
+import { default as Table } from './Table';
+export { Table };
+export type * from './types';
+//# sourceMappingURL=index.d.ts.map

package/dist/src/components/Table/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/components/Table/types.d.ts

@@ -0,0 +1,68 @@
+import { DataGridProProps } from '@mui/x-data-grid-pro';
+import { ReactElement, ReactNode } from 'react';
+export interface TableProps extends DataGridProProps {
+    /**
+     * Rows to be consumed in the table.
+     *
+     * ```undefined``` will be given default value of ```[]```
+     *
+     * Note: Rows without an 'id' property will be given id matching their index
+     */
+    rows: DataGridProProps["rows"];
+    /**
+     * @default true
+     * @note Overrides MUI default
+     */
+    disableRowSelectionOnClick?: DataGridProProps["disableRowSelectionOnClick"];
+    /**
+     * @default "compact"
+     * @note Overrides MUI default
+     */
+    density?: DataGridProProps["density"];
+    /**
+     * @default true
+     * @note Overrides MUI default
+     */
+    autosizeOnMount?: boolean;
+    /**
+     * @note Table assigns a default internal ID to each row if no ID is provided in the row data.
+     */
+    getRowId?: DataGridProProps["getRowId"];
+    /**
+     * Element to be rendered instead of `DataGridPro` when `rows` has a length of `0`.
+     * If a string is passed will use `TableFallback` component
+     */
+    emptyTableFallback?: string | ReactElement;
+    /**
+     * If true, the toolbar is displayed.
+     * @default true
+     */
+    showToolbar?: DataGridProProps["showToolbar"];
+    /**
+     * Configures the height properties of the wrapper `<div>`.
+     *
+     * By default it's wrapped with:
+     * ```jsx
+     * <div style={{ display: 'flex', flexDirection: 'column' }}>
+     * ```
+     *
+     * Additional height properties spread onto this `<div>`
+     */
+    divHeight?: {
+        height?: string;
+        minHeight?: string;
+        maxHeight?: string;
+    };
+    /**
+     * Used for failed fetches. If true will display error fallback
+     * @default false
+     */
+    error?: boolean;
+}
+export type TableToolbarProps = {
+    /**
+     * Optional ReactNode to be used in the table toolbar. Strings and numbers will be rendered as Typography variant h6.
+     */
+    title?: ReactNode;
+};
+//# sourceMappingURL=types.d.ts.map

package/dist/src/components/Table/types.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/index.d.ts

@@ -0,0 +1,9 @@
+export { RangeSlider } from './components/RangeSlider';
+export type { SliderProps } from './components/RangeSlider';
+export { DataTable } from './components/DataTable';
+export type { DataTableProps, DataTableColumn } from './components/DataTable';
+export { Table } from './components/Table';
+export type * from './components/Table';
+export { GenomeSearch } from './components/GenomeSearch';
+export type { GenomeSearchProps, Result, Domain, ResultType } from './components/GenomeSearch';
+//# sourceMappingURL=index.d.ts.map

package/dist/src/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,YAAY,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAE5D,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACnD,YAAY,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,wBAAwB,CAAC;AAE9E,OAAO,EAAE,KAAK,EAAE,MAAM,oBAAoB,CAAC;AAC3C,mBAAmB,oBAAoB,CAAC;AAExC,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AACzD,YAAY,EAAE,iBAAiB,EAAE,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,2BAA2B,CAAC"}

package/dist/ui-components.es.js

@@ -0,0 +1,8 @@
+import { D as r, G as s, R as l, T as o } from "./index-qy6Vgc_9.js";
+export {
+  r as DataTable,
+  s as GenomeSearch,
+  l as RangeSlider,
+  o as Table
+};
+//# sourceMappingURL=ui-components.es.js.map

package/dist/ui-components.es.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ui-components.es.js","sources":[],"sourcesContent":[],"names":[],"mappings":";"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@weng-lab/ui-components",
-  "version": "1.0.3",
+  "version": "1.0.5",
   "description": "React MUI components for the Weng/Moore Labs suite of genomics web resources",
   "type": "module",
   "module": "dist/ui-components.es.js",