@weng-lab/genomebrowser 1.8.5-beta.4 → 1.8.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/dist/genomebrowser.es.js
CHANGED
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@@ -326,7 +326,7 @@ function fc(e, t = uc) {
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const Ci = (e) => {
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const t = lc(e), n = (r) => fc(t, r);
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return Object.assign(n, t), n;
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-
}, It = ((e) => e ? Ci(e) : Ci),
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}, It = ((e) => e ? Ci(e) : Ci), ch = Ko;
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function dc(e) {
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return ce(() => Ko(), e ?? []);
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}
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}
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var me = /* @__PURE__ */ ((e) => (e.BigWig = "bigwig", e.BigBed = "bigbed", e.Transcript = "transcript", e.Motif = "motif", e.Importance = "importance", e.LDTrack = "ldtrack", e.BulkBed = "bulkbed", e.MethylC = "methylc", e.Manhattan = "manhattan", e.Custom = "custom", e))(me || {}), Fe = /* @__PURE__ */ ((e) => (e.Full = "full", e.Dense = "dense", e.Squish = "squish", e.Pack = "pack", e.Combined = "combined", e.Split = "split", e.Scatter = "scatter", e.LDBlock = "ldblock", e.GenericLD = "genericld", e))(Fe || {});
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const gc = /* @__PURE__ */ new Set(["chr", "start", "end", "rest"]);
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function
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function lh(e) {
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return rs(e), e;
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}
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function mc(e) {
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@@ -5263,7 +5263,7 @@ lr`
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}
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}
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`;
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async function
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async function mh(e, t, n) {
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return await Mt(e, t.expandedDomain, t.preRenderedWidth, n);
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}
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async function jl(e) {
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})
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] });
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}
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const Ql = 0, lo = 255,
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const Ql = 0, lo = 255, vh = [
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"#fd7f6f",
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"#7eb0d5",
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"#b2e061",
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@@ -5712,7 +5712,7 @@ const Ql = 0, lo = 255, mh = [
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"#beb9db",
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"#fdcce5",
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"#8bd3c7"
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],
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], xh = [
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"#e60049",
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"#0bb4ff",
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"#50e991",
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@@ -5823,6 +5823,14 @@ function ru({ id: e, data: t, color: n, height: r, dimensions: i, tooltip: a })
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)
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] });
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}
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function hi() {
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const [e, t] = be(1), n = fe((r) => r.svgRef);
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return Ee(() => {
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if (!n || !n.current) return;
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const r = n.current.getBoundingClientRect();
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t(r.width / n.current.viewBox.baseVal.width);
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}, [n]), e;
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}
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var rr = { exports: {} }, $n = {}, mr = { exports: {} }, vr = { exports: {} }, we = {};
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/** @license React v16.13.1
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* react-is.production.min.js
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}, zn;
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var Fn, go;
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function pi() {
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if (go) return Fn;
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go = 1;
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var e = "SECRET_DO_NOT_PASS_THIS_OR_YOU_WILL_BE_FIRED";
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var e = function() {
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if (process.env.NODE_ENV !== "production") {
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var t = /* @__PURE__ */
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var t = /* @__PURE__ */ pi(), n = {}, r = /* @__PURE__ */ Rs();
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e = function(a) {
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var o = "Warning: " + a;
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typeof console < "u" && console.error(o);
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@@ -6109,7 +6117,7 @@ var Wn, xo;
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function su() {
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if (xo) return Wn;
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xo = 1;
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var e = Cs(), t = au(), n = /* @__PURE__ */
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var e = Cs(), t = au(), n = /* @__PURE__ */ pi(), r = /* @__PURE__ */ Rs(), i = /* @__PURE__ */ ou(), a = function() {
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};
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process.env.NODE_ENV !== "production" && (a = function(s) {
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var c = "Warning: " + s;
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@@ -6430,7 +6438,7 @@ var Yn, yo;
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function cu() {
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if (yo) return Yn;
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yo = 1;
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var e = /* @__PURE__ */
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var e = /* @__PURE__ */ pi();
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function t() {
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function n() {
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@@ -6560,7 +6568,7 @@ function uu() {
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return _t.default = t(), _t;
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}
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var ko;
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function
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function gi() {
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if (ko) return je;
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ko = 1, Object.defineProperty(je, "__esModule", {
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value: !0
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@@ -6706,7 +6714,7 @@ function js() {
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Eo = 1, Object.defineProperty(ct, "__esModule", {
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value: !0
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}), ct.canDragX = i, ct.canDragY = a, ct.createCoreData = s, ct.createDraggableData = c, ct.getBoundPosition = n, ct.getControlPosition = o, ct.snapToGrid = r;
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var e = Lr(), t =
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var e = Lr(), t = gi();
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function n(h, b, v) {
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if (!h.props.bounds) return [b, v];
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let {
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To = 1, Object.defineProperty(nr, "__esModule", {
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value: !0
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}), nr.default = void 0;
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var e = c(Te), t = s(/* @__PURE__ */ Ds()), n = s(Vo), r =
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var e = c(Te), t = s(/* @__PURE__ */ Ds()), n = s(Vo), r = gi(), i = js(), a = Lr(), o = s(Ms());
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function s(D) {
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return D && D.__esModule ? D : { default: D };
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}
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return c.default;
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}
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}), e.default = void 0;
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var t = h(Te), n = p(/* @__PURE__ */ Ds()), r = p(Vo), i = lu(), a =
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var t = h(Te), n = p(/* @__PURE__ */ Ds()), r = p(Vo), i = lu(), a = gi(), o = js(), s = Lr(), c = p(fu()), u = p(Ms());
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function p(E) {
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return rr.exports = e, rr.exports.default = e, rr.exports.DraggableCore = t, rr.exports;
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var pu = hu();
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function gi() {
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const [e, t] = be(1), n = fe((r) => r.svgRef);
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return Ee(() => {
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t(r.width / n.current.viewBox.baseVal.width);
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}, [n]), e;
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}
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const gu = /* @__PURE__ */ Xo(pu), Tr = gu;
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function Bs({ children: e, id: t }) {
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const [n, r] = be(!1), [i, a] = be({ x: 0, y: 0 }), o = Ie(null), s = fe((D) => D.delta), c = fe((D) => D.setDelta), u = fe((D) => D.shiftDomain), p =
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const [n, r] = be(!1), [i, a] = be({ x: 0, y: 0 }), o = Ie(null), s = fe((D) => D.delta), c = fe((D) => D.setDelta), u = fe((D) => D.shiftDomain), p = hi();
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Ee(() => {
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n || a({ x: s, y: 0 });
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}, [s, n]);
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position: i,
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axis: "x",
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onStart: k,
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onDrag:
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onDrag: h,
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onStop: b,
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children: /* @__PURE__ */ f.jsx("g", { id: `drag-track-${t}`, ref: o, height: "100%", style: { cursor: v }, children: e })
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function mu(e) {
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function vu(e) {
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function xu(e) {
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/* @__PURE__ */ f.jsx(mu, { x: s / 10, y: t / 2 + 2, height: 15, width: 15, fill: C }),
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const e = fe((h) => h.getTrackDimensions), { sideWidth: t, totalWidth: n } = e(), r = fe((h) => h.getExpandedDomain), i = fe((h) => h.getDomain), [a, o] = be(r()), s = nt((h) => h.isFetching), { x: c } = lt(n);
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const [a, o] = be({ x: 0, y: 0 }), [s, c] = be(!1), [u, p] = be(0), h = Ie(null), b = hi(), v = fe((m) => m.marginWidth), k = xe((m) => m.shiftTracks), D = xe((m) => m.getTrackIndex), w = ws(e), E = Ul(e), L = (m, _) => {
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m.preventDefault(), c(!0), n(!0), o({ x: 0, y: _.y }), p(_.y);
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children: /* @__PURE__ */ f.jsx("g", { id: `swap-track-${e}`, ref: h, children: s ? /* @__PURE__ */ f.jsx(Su, { height: r, width: i, margin: v, position: w + a.y + De, children: t }) : t })
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const ku = `M20.201,5.169c-8.254,0-14.946,6.692-14.946,14.946c0,8.255,6.692,14.946,14.946,14.946
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function Lu({ width: e, height: t, color: n }) {
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/* @__PURE__ */ f.jsx("path", { opacity: "0.2", fill: n, d:
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/* @__PURE__ */ f.jsx("path", { fill: n, d:
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/* @__PURE__ */ f.jsx("path", { opacity: "0.2", fill: n, d: ku }),
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function Ru({
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/* @__PURE__ */ f.jsx("path", { fill: n, d:
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/* @__PURE__ */ f.jsx("path", { fill: n, d: Tu }),
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/* @__PURE__ */ f.jsx("path", { fill: r, d: "M225.879,63.025l183.467,325.689H42.413L225.879,63.025L225.879,63.025z" }),
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return /* @__PURE__ */ f.jsx("g", { id: `wrapper-${n}`, transform: t, children: /* @__PURE__ */ f.jsxs(
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transform: `translate(${u + (h - L) / 2},${(E - L) / 2})`,
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children: /* @__PURE__ */ f.jsx(
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children: /* @__PURE__ */ f.jsx(Lu, { color: d, width: L, height: L })
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{
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/* @__PURE__ */ f.jsx(
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/* @__PURE__ */ f.jsx(Ru, { outline: d, inside: m, width: L, height: L }),
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/* @__PURE__ */ f.jsx("g", { transform: `translate(${L / 2},${L + 10})`, children: /* @__PURE__ */ f.jsx("text", { fill: d, textAnchor: "middle", fontSize: `${D}px`, children: i }) })
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yu,
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r(t, { height: i });
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}, [n, t, r, e]), n;
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function Os(e) {
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function
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function
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const n = e.transcripts.reduce((i, a) => [...i, ...a.exons || []], []).sort(
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function Mu(e) {
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const n = e.transcripts.reduce((i, a) => [...i, ...a.exons || []], []).sort(ju), r = n.length === 0 ? [] : [{ coordinates: { ...n[0].coordinates }, UTRs: n[0].UTRs && [...n[0].UTRs] }];
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const i = Iu(e, t), a = {
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exons: ((o = i.exons) == null ? void 0 : o.reduce((s, c) => s + Au(c, n / 2, n, r), "")) || "",
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introns: Pu(
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function
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function Ou(e) {
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return o + " M " + e + " " + r + " L " + t + " " + r;
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const i = ((h = e.UTRs) == null ? void 0 : h.filter((v) => v.coordinates.start === e.coordinates.start)) || [], a = ((b = e.UTRs) == null ? void 0 : b.filter((v) => v.coordinates.end === e.coordinates.end)) || [], o = t - n * 0.2, s = t + n * 0.2, c = t - n * 0.3, u = t + n * 0.3;
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const { totalWidth: b, sideWidth: v } = i, { x: k, reverseX: D } = lt(b), w = fe((j) => j.domain), E = 10, L = ce(() => (t || []).map((j) =>
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const { totalWidth: b, sideWidth: v } = i, { x: k, reverseX: D } = lt(b), w = fe((j) => j.domain), E = 10, L = ce(() => (t || []).map((j) => Mu(j)), [t]), y = ce(
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const { totalWidth: b, sideWidth: v } = i, { x: k, reverseX: D } = lt(b), w = fe((j) => j.domain), E = 10, L = ce(() => Ou(t || []), [t]), y = ce(
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const i = t.slice(r.coordinates[0], r.coordinates[1] + 1).map((s) => s.importance), a = [Math.min(...i), Math.max(...i)], o = n(a[1]);
|
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() =>
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|
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), r = ce(() =>
|
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+
), r = ce(() => Hu(n, (o) => o.importance), [n]), i = Uu(r, { start: t, end: 0 }), a = at(Wu(i), [r, t]);
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function Uu(e, t) {
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return (n) => t.start + (t.end - t.start) * ((n - e.start) / (e.end - e.start));
|
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}
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function
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function Hu(e, t) {
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|
const n = e.map(t), r = Math.min(...n), i = Math.max(...n);
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|
return {
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start: r > 0 ? 0 : r,
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};
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function
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function Wu(e) {
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|
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|
const n = e((t < 0, t)), r = e((t < 0, 0)), i = Math.abs(r - n) / 100;
|
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return [n * (t < 0 ? -1 : 1), i, t < 0 ? "scale(1,-1)" : ""];
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};
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const
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const Yu = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
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"path",
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{
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),
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/* @__PURE__ */ f.jsx("path", { fill: "#ffffff", d: "M 77 70 C 70 90 30 90 22 80 C 10 50 80 60 77 70" })
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] }),
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] }), Gu = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
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"path",
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{
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),
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/* @__PURE__ */ f.jsx("path", { d: "M 79 60 C 80 95 20 95 20 65 C 20 30 80 30 79 65", fill: "#ffffff" })
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] }),
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+
] }), Vu = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
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/* @__PURE__ */ f.jsx(
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|
"path",
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{
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),
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/* @__PURE__ */ f.jsx("path", { d: "M 79 60 C 80 95 20 95 20 65 C 20 30 80 30 79 65", fill: "#ffffff" })
|
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|
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] }),
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+
] }), Zu = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
|
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|
/* @__PURE__ */ f.jsx(
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|
"path",
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{
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|
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}
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|
),
|
|
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|
/* @__PURE__ */ f.jsx("path", { d: "M 33 37 L 68 37 C 58 10 42 10 33 37", fill: "#ffffff" })
|
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] }),
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|
+
] }), Xu = (e) => /* @__PURE__ */ f.jsx(
|
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|
"path",
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|
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|
{
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|
d: "M 95 32 C 80 -17 20 -5 20 37 L 7 37 L 7 50 L 20 50 L 20 100 L 45 100 L 45 50 L 57 50 L 57 37 L 45 37 C 45 10 70 10 75 32 L 95 32",
|
|
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|
...e
|
|
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|
}
|
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|
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),
|
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|
+
), Ku = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
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|
/* @__PURE__ */ f.jsx(
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|
"path",
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{
|
|
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|
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|
}
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|
),
|
|
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|
/* @__PURE__ */ f.jsx("path", { d: "M 67 30 C 70 10 25 10 27 30 C 25 50 70 50 67 30", fill: "#ffffff" })
|
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|
-
] }),
|
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|
+
] }), Ju = (e) => /* @__PURE__ */ f.jsx(
|
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|
"path",
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|
{
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|
d: "M 0 0 L 0 100 L 20 100 L 20 80 C 20 40 80 40 80 80 L 80 100 L 100 100 L 100 50 C 80 20 20 20 20 45 L 20 0 L 0 0",
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|
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|
...e
|
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|
}
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|
-
),
|
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|
+
), Qu = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
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|
/* @__PURE__ */ f.jsx(
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|
"rect",
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|
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|
{
|
|
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|
height: 15
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|
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|
)
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|
-
] }),
|
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|
+
] }), ef = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
|
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|
/* @__PURE__ */ f.jsx(
|
|
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|
"path",
|
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|
{
|
|
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|
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|
}
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|
),
|
|
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|
/* @__PURE__ */ f.jsx("path", { d: "M 0 60 L 100 20", ...e })
|
|
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|
-
] }),
|
|
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|
+
] }), tf = (e) => /* @__PURE__ */ f.jsx(
|
|
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|
"path",
|
|
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|
{
|
|
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|
d: "M 0 0 L 20 0 L 20 60 L 75 30 L 100 30 L 50 65 L 100 100 L 75 100 L 27 80 L 20 85 L 20 100 L 0 100 L 0 0",
|
|
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|
...e
|
|
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|
}
|
|
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|
-
),
|
|
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|
+
), rf = (e) => /* @__PURE__ */ f.jsx(
|
|
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|
"rect",
|
|
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|
{
|
|
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|
x: 40,
|
|
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|
|
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|
height: 100,
|
|
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|
...e
|
|
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|
}
|
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|
-
),
|
|
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|
+
), nf = (e) => /* @__PURE__ */ f.jsx(
|
|
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|
"path",
|
|
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|
{
|
|
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|
d: "M 0 0 L 0 100 L 20 100 L 20 60 C 20 20 40 20 40 50 L 40 100 L 60 100 L 60 50 C 60 20 80 20 80 50 L 80 100 L 100 100 L 100 50 C 100 -10 40 -10 50 50 C 50 -5 20 -5 20 20 L 20 0 L 0 0",
|
|
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|
...e
|
|
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|
}
|
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|
-
),
|
|
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|
+
), af = (e) => /* @__PURE__ */ f.jsx(
|
|
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|
"path",
|
|
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|
{
|
|
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|
d: "M 0 0 L 0 100 L 20 100 L 20 60 C 20 0 80 0 80 50 L 80 100 L 100 100 L 100 25 C 80 -10 20 -10 20 20 L 20 0 L 0 0",
|
|
8447
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|
...e
|
|
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|
}
|
|
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|
-
),
|
|
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|
+
), of = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
|
|
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|
/* @__PURE__ */ f.jsx(
|
|
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|
"path",
|
|
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|
{
|
|
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|
|
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|
}
|
|
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|
),
|
|
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|
/* @__PURE__ */ f.jsx("path", { d: "M 79 40 C 80 5 20 5 20 35 C 20 70 80 70 79 35", fill: "#ffffff" })
|
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|
-
] }),
|
|
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|
+
] }), sf = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
|
|
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|
/* @__PURE__ */ f.jsx(
|
|
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|
"path",
|
|
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|
{
|
|
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|
|
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|
}
|
|
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|
),
|
|
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|
/* @__PURE__ */ f.jsx("path", { d: "M 79 40 C 80 5 20 5 20 35 C 20 70 80 70 79 35", fill: "#ffffff" })
|
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|
-
] }),
|
|
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|
+
] }), cf = (e) => /* @__PURE__ */ f.jsx(
|
|
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|
"path",
|
|
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|
{
|
|
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|
d: "M 0 0 L 0 100 L 20 100 L 20 60 C 20 0 80 0 80 50 L 100 50 L 100 25 C 80 -10 20 -10 20 20 L 20 0 L 0 0",
|
|
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|
...e
|
|
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|
}
|
|
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|
-
),
|
|
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|
+
), lf = (e) => /* @__PURE__ */ f.jsx(
|
|
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|
"path",
|
|
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|
{
|
|
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|
d: "M 95 68 C 80 117 20 105 20 63 L 20 47 L 7 47 L 7 27 L 20 27 L 20 0 L 45 0 L 45 27 L 57 27 L 57 47 L 45 47 L 45 63 C 45 90 70 90 75 68 L 95 68",
|
|
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|
...e
|
|
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|
}
|
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|
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),
|
|
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|
+
), uf = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
|
|
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|
/* @__PURE__ */ f.jsx(
|
|
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|
"path",
|
|
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|
{
|
|
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|
|
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|
width: 25
|
|
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|
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|
|
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|
)
|
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|
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] }),
|
|
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|
+
] }), ff = (e) => /* @__PURE__ */ f.jsx(
|
|
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|
"path",
|
|
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|
{
|
|
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|
d: "M 0 0 L 25 0 L 50 36 L 75 0 L 100 0 L 40 100 L 12 100 L 37 55 L 0 0",
|
|
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|
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|
|
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|
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|
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|
);
|
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|
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function
|
|
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|
+
function df(e) {
|
|
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|
return /* @__PURE__ */ f.jsx(
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|
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|
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|
{
|
|
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|
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|
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|
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|
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|
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const
|
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|
+
const hf = (e) => /* @__PURE__ */ f.jsx(
|
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|
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|
|
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|
{
|
|
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|
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|
|
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|
d: "M 0 25 C 20 -8 80 -8 100 25 C 100 90 30 50 20 85 L 100 85 L 100 100 L 0 100 L 0 70 C 10 40 75 70 75 25 C 70 10 30 10 25 28 L 0 25"
|
|
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|
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|
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|
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),
|
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|
+
), pf = (e) => /* @__PURE__ */ f.jsx(
|
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|
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|
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|
{
|
|
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|
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|
|
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|
d: "M 0 35 L 0 25 C 20 -8 80 -8 100 25 C 100 30 100 50 75 50 C 100 50 100 70 100 75 C 80 108 20 108 0 75 L 0 65 L 25 65 L 25 75 C 30 88 70 88 75 75 C 75 68 75 65 47 58 L 47 42 C 75 32 75 35 75 25 C 70 12 30 12 25 25 L 25 35"
|
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|
}
|
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|
-
),
|
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|
+
), gf = (e) => /* @__PURE__ */ f.jsx(
|
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|
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|
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|
{
|
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|
...e,
|
|
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|
d: "M 50 0 L 0 50 L 0 70 L 50 70 L 50 100 L 75 100 L 75 70 L 100 70 L 100 50 L 75 50 L 75 0 L 50 15 L 50 50 L 30 50 L 75 0 L 50 0"
|
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|
}
|
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|
-
),
|
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|
+
), mf = (e) => /* @__PURE__ */ f.jsx(
|
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|
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|
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|
{
|
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|
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|
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|
d: "M 95 20 L 100 0 L 10 0 L 0 60 L 25 60 C 30 45 90 50 75 77 C 66 87 30 90 26 72 L 0 80 C 20 110 80 110 100 70 C 100 25 10 25 25 40 L 30 20 L 95 20"
|
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|
}
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|
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),
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|
+
), vf = (e) => /* @__PURE__ */ f.jsx(
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|
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|
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|
{
|
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|
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|
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|
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|
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|
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|
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),
|
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|
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), xf = (e) => /* @__PURE__ */ f.jsx(
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|
{
|
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|
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|
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|
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|
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|
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),
|
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|
+
), yf = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
|
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/* @__PURE__ */ f.jsx(
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|
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{
|
|
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|
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|
d: "M 100 35 L 100 25 C 80 -8 20 -8 0 25 C 0 30 0 50 25 50 C 0 50 0 70 0 75 C 20 108 80 108 100 75 L 100 65 L 75 65 L 75 75 C 70 88 30 88 25 75 C 25 68 25 65 53 58 L 53 42 C 25 32 25 35 25 25 C 30 12 70 12 75 25 L 75 35"
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|
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|
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] }),
|
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|
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] }), _f = (e) => /* @__PURE__ */ f.jsx(
|
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{
|
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|
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|
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|
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|
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|
/* @__PURE__ */ f.jsx("path", { fill: "#ffffff", d: "M 41 55 L 50 25 L 58 55 L 41 55" })
|
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|
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] }),
|
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|
+
] }), bf = `M 0 0 L 80 0 C 105 0 105 50 80 50
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|
C 105 50 105 100 80 100 L 00 100
|
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|
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L 0 0`,
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|
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/* @__PURE__ */ f.jsx("path", { ...e, d:
|
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|
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L 0 0`, wf = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
|
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|
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/* @__PURE__ */ f.jsx("path", { ...e, d: bf }),
|
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|
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|
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|
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|
|
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|
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|
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] }),
|
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|
+
] }), Sf = `M 100 28 C 100 -13 0 -13 0 50
|
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|
C 0 113 100 113 100 72 L 75 72
|
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|
C 75 90 30 90 30 50 C 30 10 75 10 75 28
|
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|
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L 100 28`, br = (e) => /* @__PURE__ */ f.jsx("path", { ...e, d:
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|
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L 0 100 L 0 0`,
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|
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L 20 85 L 20 15`,
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|
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/* @__PURE__ */ f.jsx("path", { ...e, d:
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|
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/* @__PURE__ */ f.jsx("path", { fill: "#ffffff", d:
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|
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] }),
|
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|
+
L 100 28`, br = (e) => /* @__PURE__ */ f.jsx("path", { ...e, d: Sf }), kf = `M 0 0 L 60 0 C 110 0 110 100 60 100
|
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|
+
L 0 100 L 0 0`, Ef = `M 20 15 L 40 15 C 85 15 85 85 40 85
|
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|
+
L 20 85 L 20 15`, Lf = (e) => /* @__PURE__ */ f.jsxs("g", { children: [
|
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/* @__PURE__ */ f.jsx("path", { ...e, d:
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/* @__PURE__ */ f.jsx("path", { d:
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/* @__PURE__ */ f.jsx("path", { d: Vf, ...e })
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/* @__PURE__ */ f.jsx("path", { ...e, d: Xf }),
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function cd({ xscale: e, yscale: t, inverted: n, children: r }) {
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children: /* @__PURE__ */ f.jsx(
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}, ud = (e, t) => (n) => t[0] + (t[1] - t[0]) * ((n - e[0]) / (e[1] - e[0])), fd = ({
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{ component: [
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{ component: [Cf], regex: ["E"], color: ["olive"] },
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{ component: [Df], regex: ["F"], color: ["navy"] },
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{ component: [Zu], regex: ["e"], color: ["olive"] },
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{ component: [Xu], regex: ["f"], color: ["navy"] },
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{ component: [Ku], regex: ["g"], color: ["orange"] },
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{ component: [Ju], regex: ["h"], color: ["teal"] },
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{ component: [Qu], regex: ["i"], color: ["cadetblue"] },
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{ component: [ef], regex: ["j"], color: ["lavender"] },
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{ component: [tf], regex: ["k"], color: ["chocolate"] },
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{ component: [
|
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|
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{ component: [
|
|
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|
-
{ component: [
|
|
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|
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{ component: [
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|
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{ component: [
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|
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|
-
{ component: [
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|
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{ component: [
|
|
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|
-
{ component: [
|
|
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|
-
{ component: [
|
|
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|
-
],
|
|
8820
|
+
{ component: [df], regex: ["1"], color: ["red"] },
|
|
8821
|
+
{ component: [hf], regex: ["2"], color: ["green"] },
|
|
8822
|
+
{ component: [pf], regex: ["3"], color: ["purple"] },
|
|
8823
|
+
{ component: [gf], regex: ["4"], color: ["navy"] },
|
|
8824
|
+
{ component: [mf], regex: ["5"], color: ["teal"] },
|
|
8825
|
+
{ component: [vf], regex: ["6"], color: ["gold"] },
|
|
8826
|
+
{ component: [xf], regex: ["7"], color: ["olive"] },
|
|
8827
|
+
{ component: [yf], regex: ["8"], color: ["slate"] },
|
|
8828
|
+
{ component: [_f], regex: ["9"], color: ["firebrick"] }
|
|
8829
|
+
], dd = (e, t) => {
|
|
8830
8830
|
let n = ("" + e).length;
|
|
8831
8831
|
for (let r = e + 1; r < e + t; ++r)
|
|
8832
8832
|
("" + r).length > n && (n = ("" + r).length);
|
|
@@ -8838,7 +8838,7 @@ const cd = ({
|
|
|
8838
8838
|
e[r] = Po[n];
|
|
8839
8839
|
});
|
|
8840
8840
|
}), e;
|
|
8841
|
-
})(),
|
|
8841
|
+
})(), hd = (e) => e.map((t) => {
|
|
8842
8842
|
if (t.regex.length === 1)
|
|
8843
8843
|
return Object.assign({}, t, {
|
|
8844
8844
|
component: Ao[t.regex[0]].component
|
|
@@ -8848,7 +8848,7 @@ const cd = ({
|
|
|
8848
8848
|
for (let i = 0; i < r.regex.length; ++i)
|
|
8849
8849
|
r.component.push(Ao[r.regex[i]].component[0]), r.color.push(t.color && t.color[i] || n);
|
|
8850
8850
|
return r;
|
|
8851
|
-
}),
|
|
8851
|
+
}), pd = (e) => (t, n) => {
|
|
8852
8852
|
let r = 0, i = n || 0;
|
|
8853
8853
|
return t.map(
|
|
8854
8854
|
(a, o) => r += a === 0 ? 0 : a * Math.log2(a / (e[o] || 0.01))
|
|
@@ -8856,12 +8856,12 @@ const cd = ({
|
|
|
8856
8856
|
const o = a * (r - i);
|
|
8857
8857
|
return o <= 0 ? 0 : o;
|
|
8858
8858
|
});
|
|
8859
|
-
},
|
|
8859
|
+
}, gd = (e) => e.map((t, n) => n).sort((t, n) => e[t] < e[n] ? -1 : e[t] === e[n] ? 0 : 1), md = (e) => e.map((t, n) => n).sort((t, n) => e[t] < e[n] ? 1 : e[t] === e[n] ? 0 : -1), yi = (e) => {
|
|
8860
8860
|
let t = [];
|
|
8861
8861
|
for (let n = 0; n < Math.floor(e); n++)
|
|
8862
8862
|
t.push(n);
|
|
8863
8863
|
return t;
|
|
8864
|
-
},
|
|
8864
|
+
}, vd = ({
|
|
8865
8865
|
n: e,
|
|
8866
8866
|
transform: t,
|
|
8867
8867
|
glyphWidth: n,
|
|
@@ -8879,7 +8879,7 @@ const cd = ({
|
|
|
8879
8879
|
},
|
|
8880
8880
|
a
|
|
8881
8881
|
)) }) });
|
|
8882
|
-
},
|
|
8882
|
+
}, xd = (e) => {
|
|
8883
8883
|
const t = yi(e.bits + 1), n = e.zeroPoint || 1;
|
|
8884
8884
|
return /* @__PURE__ */ f.jsxs("g", { transform: e.transform, children: [
|
|
8885
8885
|
/* @__PURE__ */ f.jsx(
|
|
@@ -8923,7 +8923,7 @@ const cd = ({
|
|
|
8923
8923
|
}
|
|
8924
8924
|
) })
|
|
8925
8925
|
] });
|
|
8926
|
-
},
|
|
8926
|
+
}, yd = (e) => {
|
|
8927
8927
|
const t = yi(e.ticks + 1).map((n) => n / e.ticks);
|
|
8928
8928
|
return /* @__PURE__ */ f.jsxs("g", { transform: e.transform, children: [
|
|
8929
8929
|
/* @__PURE__ */ f.jsx(
|
|
@@ -8958,10 +8958,10 @@ const cd = ({
|
|
|
8958
8958
|
)),
|
|
8959
8959
|
/* @__PURE__ */ f.jsx("g", { transform: "rotate(-90)", children: /* @__PURE__ */ f.jsx("text", { y: "15", x: -e.height / 2, textAnchor: "middle", fontSize: "18", children: "frequency" }) })
|
|
8960
8960
|
] });
|
|
8961
|
-
},
|
|
8962
|
-
const p = u ?
|
|
8961
|
+
}, _d = (e, t, n, r) => (i, a, o, s, c, u) => {
|
|
8962
|
+
const p = u ? md(i) : gd(i), { onSymbolMouseOver: h, onSymbolMouseOut: b, onSymbolClick: v } = s;
|
|
8963
8963
|
return /* @__PURE__ */ f.jsx(
|
|
8964
|
-
|
|
8964
|
+
ld,
|
|
8965
8965
|
{
|
|
8966
8966
|
indices: p,
|
|
8967
8967
|
alphabet: o,
|
|
@@ -8977,7 +8977,7 @@ const cd = ({
|
|
|
8977
8977
|
},
|
|
8978
8978
|
a
|
|
8979
8979
|
);
|
|
8980
|
-
},
|
|
8980
|
+
}, bd = ({
|
|
8981
8981
|
values: e,
|
|
8982
8982
|
glyphWidth: t,
|
|
8983
8983
|
stackHeight: n,
|
|
@@ -8986,10 +8986,10 @@ const cd = ({
|
|
|
8986
8986
|
onSymbolMouseOut: a,
|
|
8987
8987
|
onSymbolClick: o
|
|
8988
8988
|
}) => {
|
|
8989
|
-
const s =
|
|
8989
|
+
const s = _d(t, n);
|
|
8990
8990
|
for (const c in r)
|
|
8991
8991
|
if (!r[c].component) {
|
|
8992
|
-
r =
|
|
8992
|
+
r = hd(r);
|
|
8993
8993
|
break;
|
|
8994
8994
|
}
|
|
8995
8995
|
return e.map(
|
|
@@ -9012,7 +9012,7 @@ const cd = ({
|
|
|
9012
9012
|
count: n.length,
|
|
9013
9013
|
pfm: r
|
|
9014
9014
|
};
|
|
9015
|
-
},
|
|
9015
|
+
}, wd = (e, t) => {
|
|
9016
9016
|
const n = {}, r = [];
|
|
9017
9017
|
return e.forEach((i, a) => {
|
|
9018
9018
|
i.regex.forEach((o) => {
|
|
@@ -9022,7 +9022,7 @@ const cd = ({
|
|
|
9022
9022
|
`).forEach((i) => {
|
|
9023
9023
|
i[0] === ">" ? r.push("") : r[r.length - 1] += i.trim();
|
|
9024
9024
|
}), Ns(e, n, r);
|
|
9025
|
-
},
|
|
9025
|
+
}, Sd = (e, t) => {
|
|
9026
9026
|
const n = {};
|
|
9027
9027
|
return e.forEach((r, i) => {
|
|
9028
9028
|
r.regex.forEach((a) => {
|
|
@@ -9034,7 +9034,7 @@ const cd = ({
|
|
|
9034
9034
|
t.split(`
|
|
9035
9035
|
`).map((r) => r.trim())
|
|
9036
9036
|
);
|
|
9037
|
-
},
|
|
9037
|
+
}, kd = ({
|
|
9038
9038
|
ppm: e,
|
|
9039
9039
|
pfm: t,
|
|
9040
9040
|
values: n,
|
|
@@ -9061,7 +9061,7 @@ const cd = ({
|
|
|
9061
9061
|
let _ = null;
|
|
9062
9062
|
const g = (t || r) && !v && !d ? !k : !1, x = g ? 0 : (v || 0) / s.length;
|
|
9063
9063
|
if (!e && !t && r) {
|
|
9064
|
-
const ne = (y ?
|
|
9064
|
+
const ne = (y ? Sd : wd)(
|
|
9065
9065
|
s,
|
|
9066
9066
|
r.toUpperCase()
|
|
9067
9067
|
);
|
|
@@ -9083,7 +9083,7 @@ const cd = ({
|
|
|
9083
9083
|
let j = e[0].length;
|
|
9084
9084
|
b || (b = e[0].map((ne) => 1 / j));
|
|
9085
9085
|
let M = n || (i !== Vn ? e.map(
|
|
9086
|
-
(ne, F) =>
|
|
9086
|
+
(ne, F) => pd(b)(ne, C ? C[F] : void 0)
|
|
9087
9087
|
) : e.map(
|
|
9088
9088
|
(ne) => ne.map((F) => F * Math.log2(j))
|
|
9089
9089
|
));
|
|
@@ -9091,7 +9091,7 @@ const cd = ({
|
|
|
9091
9091
|
p = p && !isNaN(parseFloat(p.toString())) && isFinite(p) ? p : 1;
|
|
9092
9092
|
let V = 100 * A;
|
|
9093
9093
|
c = V / 6 * (c || 1);
|
|
9094
|
-
let W = M.length * c + 80, ae = V + 18 * (
|
|
9094
|
+
let W = M.length * c + 80, ae = V + 18 * (dd(p, M.length) + 1);
|
|
9095
9095
|
return u && (W > ae ? o = u : a = u), /* @__PURE__ */ f.jsxs(
|
|
9096
9096
|
"svg",
|
|
9097
9097
|
{
|
|
@@ -9101,7 +9101,7 @@ const cd = ({
|
|
|
9101
9101
|
ref: m,
|
|
9102
9102
|
children: [
|
|
9103
9103
|
h && /* @__PURE__ */ f.jsx(
|
|
9104
|
-
|
|
9104
|
+
fd,
|
|
9105
9105
|
{
|
|
9106
9106
|
minrange: p,
|
|
9107
9107
|
maxrange: p + e.length,
|
|
@@ -9113,7 +9113,7 @@ const cd = ({
|
|
|
9113
9113
|
}
|
|
9114
9114
|
),
|
|
9115
9115
|
/* @__PURE__ */ f.jsx(
|
|
9116
|
-
|
|
9116
|
+
vd,
|
|
9117
9117
|
{
|
|
9118
9118
|
transform: "translate(80," + (V + 20) + ")",
|
|
9119
9119
|
n: M.length,
|
|
@@ -9122,7 +9122,7 @@ const cd = ({
|
|
|
9122
9122
|
}
|
|
9123
9123
|
),
|
|
9124
9124
|
i === Vn ? /* @__PURE__ */ f.jsx(
|
|
9125
|
-
|
|
9125
|
+
yd,
|
|
9126
9126
|
{
|
|
9127
9127
|
transform: "translate(0,10)",
|
|
9128
9128
|
width: 65,
|
|
@@ -9130,7 +9130,7 @@ const cd = ({
|
|
|
9130
9130
|
ticks: 2
|
|
9131
9131
|
}
|
|
9132
9132
|
) : /* @__PURE__ */ f.jsx(
|
|
9133
|
-
|
|
9133
|
+
xd,
|
|
9134
9134
|
{
|
|
9135
9135
|
transform: "translate(0,10)",
|
|
9136
9136
|
width: 65,
|
|
@@ -9140,7 +9140,7 @@ const cd = ({
|
|
|
9140
9140
|
}
|
|
9141
9141
|
),
|
|
9142
9142
|
/* @__PURE__ */ f.jsx("g", { transform: "translate(80,10)", children: /* @__PURE__ */ f.jsx(
|
|
9143
|
-
|
|
9143
|
+
bd,
|
|
9144
9144
|
{
|
|
9145
9145
|
values: M,
|
|
9146
9146
|
glyphWidth: c,
|
|
@@ -9154,26 +9154,26 @@ const cd = ({
|
|
|
9154
9154
|
]
|
|
9155
9155
|
}
|
|
9156
9156
|
);
|
|
9157
|
-
},
|
|
9157
|
+
}, Ed = [
|
|
9158
9158
|
{ component: [mi], regex: ["A"], color: ["red"] },
|
|
9159
9159
|
{ component: [br], regex: ["C"], color: ["blue"] },
|
|
9160
9160
|
{ component: [vi], regex: ["G"], color: ["orange"] },
|
|
9161
9161
|
{ component: [xi], regex: ["T"], color: ["#228b22"] }
|
|
9162
9162
|
];
|
|
9163
|
-
function
|
|
9164
|
-
return /* @__PURE__ */ f.jsx(
|
|
9163
|
+
function Ld(e) {
|
|
9164
|
+
return /* @__PURE__ */ f.jsx(kd, { ...e, alphabet: Ed });
|
|
9165
9165
|
}
|
|
9166
9166
|
const No = /* @__PURE__ */ new Map([
|
|
9167
9167
|
["A", mi],
|
|
9168
9168
|
["C", br],
|
|
9169
9169
|
["G", vi],
|
|
9170
9170
|
["T", xi]
|
|
9171
|
-
]),
|
|
9171
|
+
]), Td = /* @__PURE__ */ new Map([
|
|
9172
9172
|
["A", "#008800"],
|
|
9173
9173
|
["C", "#000088"],
|
|
9174
9174
|
["G", "#a89132"],
|
|
9175
9175
|
["T", "#880000"]
|
|
9176
|
-
]),
|
|
9176
|
+
]), Cd = (e) => {
|
|
9177
9177
|
const [t, n, r] = ce(() => e.transform(e.importance), [e.transform, e.importance]);
|
|
9178
9178
|
return No.get(e.base) ? /* @__PURE__ */ f.jsxs(f.Fragment, { children: [
|
|
9179
9179
|
/* @__PURE__ */ f.jsx(
|
|
@@ -9192,14 +9192,14 @@ const No = /* @__PURE__ */ new Map([
|
|
|
9192
9192
|
}
|
|
9193
9193
|
),
|
|
9194
9194
|
/* @__PURE__ */ f.jsx("g", { transform: `${r} translate(${e.x},${t}) scale(${e.xScale},${n})`, children: oi(No.get(e.base), {
|
|
9195
|
-
fill:
|
|
9195
|
+
fill: Td.get(e.base)
|
|
9196
9196
|
}) })
|
|
9197
9197
|
] }) : null;
|
|
9198
|
-
},
|
|
9199
|
-
function
|
|
9198
|
+
}, Rd = Te.memo(Cd, (e, t) => e.base === t.base && e.importance === t.importance && e.x === t.x && e.totalHeight === t.totalHeight && e.totalWidth === t.totalWidth && e.xScale === t.xScale && e.transform === t.transform && e.onMouseOver === t.onMouseOver && e.onMouseOut === t.onMouseOut && e.onMouseUp === t.onMouseUp && e.onClick === t.onClick);
|
|
9199
|
+
function Dd({ data: e, annotations: t, dimensions: n, height: r, zeroLineProps: i }) {
|
|
9200
9200
|
if (e.length === 0 || e.importance.length === 0)
|
|
9201
9201
|
return null;
|
|
9202
|
-
const { viewWidth: a } = n, [o] = be(null), [s, c, u] =
|
|
9202
|
+
const { viewWidth: a } = n, [o] = be(null), [s, c, u] = zu(e, r), p = $u(t || [], s, u), h = ce(() => a / s.length / 100, [a, s.length]), b = at(c, [c]), v = ce(() => p.map((L, y) => {
|
|
9203
9203
|
const d = 100 * h * Math.abs(L.coordinates[1] - L.coordinates[0]), m = Math.min(...L.coordinates) * h * 100, _ = L.y + L.height, g = 80;
|
|
9204
9204
|
return /* @__PURE__ */ f.jsxs(Ks, { children: [
|
|
9205
9205
|
/* @__PURE__ */ f.jsx(
|
|
@@ -9232,7 +9232,7 @@ function Rd({ data: e, annotations: t, dimensions: n, height: r, zeroLineProps:
|
|
|
9232
9232
|
}),
|
|
9233
9233
|
[h, r, b]
|
|
9234
9234
|
), D = ce(() => s.map(
|
|
9235
|
-
(L, y) => L.importance ? /* @__PURE__ */ oi(
|
|
9235
|
+
(L, y) => L.importance ? /* @__PURE__ */ oi(Rd, { ...k, key: y, x: y * h * 100, ...L }) : null
|
|
9236
9236
|
), [s, h, r, b]), w = ce(() => c(0)[0], [c]), E = ce(() => s.filter((L) => L.importance).length > 0 ? /* @__PURE__ */ f.jsx("line", { stroke: "#ff0000", strokeWidth: 1, ...i, x1: 0, x2: a, y1: w, y2: w }) : /* @__PURE__ */ f.jsx("text", { x: 0, y: r / 2, children: "No importance track data" }), [s, a, w, r, i]);
|
|
9237
9237
|
return /* @__PURE__ */ f.jsxs("g", { width: a, height: r, children: [
|
|
9238
9238
|
o !== null && /* @__PURE__ */ f.jsx(
|
|
@@ -9289,9 +9289,9 @@ const qs = (e) => /* @__PURE__ */ f.jsxs("g", { transform: "translate(0, -150)",
|
|
|
9289
9289
|
style: { filter: "drop-shadow(0px 0px 5px rgba(0,0,0,0.3))" }
|
|
9290
9290
|
}
|
|
9291
9291
|
),
|
|
9292
|
-
e.pwm && /* @__PURE__ */ f.jsx(
|
|
9292
|
+
e.pwm && /* @__PURE__ */ f.jsx(Ld, { ppm: e.pwm, mode: "INFORMATION_CONTENT", width: e.pwm.length * 20, height: 150 })
|
|
9293
9293
|
] });
|
|
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)) }, `group_${g}`))
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const { range: c, rangeSize: u } = s, p = r ? 0 : t;
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if (v.min === null || v.max === null || o && !Id(a == null ? void 0 : a[k])) return;
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const D = zs(v, c, u, t, r);
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b += ge(v.x, p) + ge(D.x, r ? t : 0) + ge(D.x + 1, r ? t : 0) + ge(v.x + 1, p), h += ge(v.x, p) + ge(D.x, D.y) + ge(D.x + 1, D.y) + ge(v.x + 1, p);
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min: e.map((E) => E.min).reduce((E, L) => Math.min(E, L), 1 / 0),
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max: e.map((E) => E.max).reduce((E, L) => Math.max(E, L), -1 / 0)
|
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@@ -9772,8 +9772,8 @@ const Fo = (e, t, n, r, i) => {
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const n = e.ldblocksnpid.split(",").map((a) => a.trim()), r = e.rsquare.split(",").map((a) => a.trim()), i = n.indexOf(t);
|
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return i >= 0 && i < r.length ? r[i] : r[0] || e.rsquare;
|
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},
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function
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+
}, zd = (e) => e.ldblocksnpid === "Lead" ? e.rsquare : e.rsquare.split(",").map((n) => n.trim())[0] || e.rsquare, wt = (e) => e.rsquare.includes("*") || e.ldblocksnpid.includes("Lead"), Fd = (e, t) => wt(e) ? t : pt(t, 0.3);
|
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+
function Ud({
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|
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|
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|
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}), [x, C] = be(null), [j, M] = be([]), [B, A] = be([]), q = ce(() => {
|
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|
const N = a || [], V = d.filter((ae) => N.includes(ae.snpid));
|
|
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return (x ? [...V, x] : V).filter((ae, ne, F) => ne === F.findIndex((I) => I.snpid === ae.snpid));
|
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|
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function Hd(e) {
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const t = ht((r) => r.text), n = ht((r) => r.background);
|
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return /* @__PURE__ */ f.jsxs("g", { style: { filter: `drop-shadow(0 0 2px ${t})` }, children: [
|
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/* @__PURE__ */ f.jsx("rect", { width: 180, height: 50, y: 0, fill: n }),
|
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@@ -9936,10 +9936,10 @@ function Ud(e) {
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"-",
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e.stop
|
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|
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|
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/* @__PURE__ */ f.jsx("text", { fontSize: 14, x: 5, y: 48, children: wt(e) ? "Lead" :
|
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|
+
/* @__PURE__ */ f.jsx("text", { fontSize: 14, x: 5, y: 48, children: wt(e) ? "Lead" : zd(e) })
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}), d = ce(() => {
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const g = t.map((C) => C.value).reduce((C, j) => Math.min(C, j), 1 / 0), x = t.map((C) => C.value).reduce((C, j) => Math.max(C, j), -1 / 0);
|
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return {
|
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const t = ht((r) => r.text), n = ht((r) => r.background);
|
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return /* @__PURE__ */ f.jsxs("g", { style: { filter: `drop-shadow(0 0 2px ${t})` }, children: [
|
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|
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|
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|
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|
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return /* @__PURE__ */ f.jsxs("g", { transform: `translate(-${b}, 0)`, children: [
|
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|
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|
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function Vd(e) {
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|
const t = ht((r) => r.text), n = ht((r) => r.background);
|
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return /* @__PURE__ */ f.jsxs("g", { style: { filter: `drop-shadow(0 0 2px ${t})` }, children: [
|
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|
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@@ -10111,50 +10111,50 @@ function Gd(e) {
|
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|
/* @__PURE__ */ f.jsx("text", { fontSize: 14, x: 5, y: 48, children: Number(e.value).toFixed(3) })
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|
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|
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function Zd({ id: e }) {
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|
const t = xe((h) => h.getTrack(e)), n = nt((h) => h.trackData.get(e)), i = fe((h) => h.getTrackDimensions)(), a = !n || n.data === null && n.error === null, o = (n == null ? void 0 : n.error) ?? void 0, s = (n == null ? void 0 : n.data) ?? void 0, c = ws(e), u = ce(() => `translate(0, ${c + De})`, [c]), p = ce(
|
|
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|
-
() => t && s ?
|
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|
+
() => t && s ? Xd(t, s, i) : /* @__PURE__ */ f.jsx(f.Fragment, {}),
|
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|
[t, s, i]
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|
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|
return /* @__PURE__ */ f.jsx(Is, { id: e, transform: u, error: o, loading: a, children: p });
|
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}
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const _i = {
|
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|
[me.BigWig]: {
|
|
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|
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[Fe.Full]:
|
|
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|
+
[Fe.Full]: qd,
|
|
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|
[Fe.Dense]: ru
|
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|
},
|
|
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|
[me.BigBed]: {
|
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|
[Fe.Dense]: Ts,
|
|
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|
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[Fe.Squish]:
|
|
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|
+
[Fe.Squish]: Du
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|
},
|
|
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|
[me.Transcript]: {
|
|
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|
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[Fe.Squish]:
|
|
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|
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[Fe.Pack]:
|
|
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|
+
[Fe.Squish]: Nu,
|
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|
+
[Fe.Pack]: qu
|
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|
},
|
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|
[me.Motif]: {
|
|
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|
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[Fe.Dense]:
|
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|
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[Fe.Squish]:
|
|
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|
+
[Fe.Dense]: jd,
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|
+
[Fe.Squish]: Md
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},
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[me.Importance]: {
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|
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[Fe.Full]:
|
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|
+
[Fe.Full]: Dd
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|
},
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|
[me.LDTrack]: {
|
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|
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[Fe.LDBlock]:
|
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|
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[Fe.GenericLD]:
|
|
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|
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[Fe.LDBlock]: Ud,
|
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|
+
[Fe.GenericLD]: Gd
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|
},
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[me.BulkBed]: {
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|
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|
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|
+
[Fe.Full]: Bd
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},
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[me.MethylC]: {
|
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// [DisplayMode.Combined]: CombinedMethylC,
|
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|
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[Fe.Split]:
|
|
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|
+
[Fe.Split]: Nd
|
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|
},
|
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|
[me.Manhattan]: {
|
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|
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[Fe.Scatter]:
|
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|
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[Fe.Scatter]: Wd
|
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|
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[me.Custom]: {}
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|
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|
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function
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|
+
function Xd(e, t, n) {
|
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if (e.trackType === me.Custom) {
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|
const a = e.renderers[e.displayMode];
|
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|
return a ? /* @__PURE__ */ f.jsx(a, { ...e, data: t, dimensions: n }) : null;
|
|
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|
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return /* @__PURE__ */ f.jsx(r, { ...e, data: t, dimensions: n });
|
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|
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|
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function
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|
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const r =
|
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|
+
function Kd(e, t, n) {
|
|
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|
+
const r = Jd(t, n), i = new Set(r), s = ["chrom chromStart chromEnd value", Array.from(i).map((u) => `${u.chrom} ${u.chromStart} ${u.chromEnd} ${u.value}`).join(`
|
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|
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const e = Ut((w) => w.open), t = Ut((w) => w.id), n = Ut((w) => w.x), r = Ut((w) => w.y), i = Ut((w) => w.setContextMenu), a = Ie(null), o = xe((w) => w.getTrack(t || "")), s = nt((w) => w.trackData.get(t || "")), c = xe((w) => w.editTrack), u = xe((w) => w.removeTrack), [p, h] = be(null);
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return Te.createElement("div", { className: a, style: { top: 100 * i + "%", left: 100 * n + "%" } }, Te.createElement("div", { className: "react-colorful__pointer-fill", style: { backgroundColor: t } }));
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n({ h: cr(t + 360 * i.left, 0, 360) });
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return Te.createElement("div", { className: "react-colorful__saturation", style: r }, Te.createElement(Hs, { onMove: function(i) {
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n({ s: 100 * i.left, v: 100 - 100 * i.top });
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|
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function
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function d0(e, t, n) {
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var
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h0(function() {
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var c = d0(n, i, a), u = c[0], p = c[1], h = bi(["react-colorful", t]);
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return Te.createElement("div", Rr({}, o, { ref: s, className: h }), Te.createElement(u0, { hsva: u, onChange: p }), Te.createElement(l0, { hue: u.h, onChange: p, className: "react-colorful__last-control" }));
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function
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function y0(e, t) {
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function wr(e) {
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var ii = /* @__PURE__ */ ((e) => (e[e.V29 = 29] = "V29", e[e.V40 = 40] = "V40", e[e.V47 = 47] = "V47", e))(ii || {}), Gs = /* @__PURE__ */ ((e) => (e[e.V21 = 21] = "V21", e[e.V25 = 25] = "V25", e))(Gs || {});
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/* @__PURE__ */ f.jsx("button", { title: "auto scale range", onClick: () => r(e, { customRange: void 0 }), children: /* @__PURE__ */ f.jsx(
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const t = fe((k) => k.getExpandedDomain), n = nt((k) => k.trackData.get(e.id || "")), r = t(), i = e.color || "#ffffff", a =
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e.trackType === me.BigWig ?
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function M0({ track: e }) {
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const t = fe((k) => k.getExpandedDomain), n = nt((k) => k.trackData.get(e.id || "")), r = t(), i = e.color || "#ffffff", a = w0(i), o = ar(i, a ? 30 : -30), s = wr(i), c = (n == null ? void 0 : n.data) ?? void 0, u = () => {
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+
e.trackType === me.BigWig ? Kd(e.id, c, r) : e.trackType === me.BigBed && Qd(e.id, c, r);
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}, p = () => {
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}, h = () => {
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return /* @__PURE__ */ f.jsx(gt, { title: "Gap", children: /* @__PURE__ */ f.jsx(ai, { defaultValue: t, validate: o, callback: a }) });
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function
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function I0({ datasets: e }) {
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return /* @__PURE__ */ f.jsx(gt, { title: "Datasets", children: /* @__PURE__ */ f.jsx("div", { style: { display: "flex", flexDirection: "column", gap: "2px" }, children: e.map((t, n) => /* @__PURE__ */ f.jsx("div", { style: { fontSize: "12px", color: "#666" }, children: t.name }, n)) }) });
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function
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function O0() {
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const e = ir((b) => b.id), t = ir((b) => b.open), n = ir((b) => b.closeModal), r = ir((b) => b.position), i = 40, [a, o] = be(r), [s, c] = be(!1), u = (b, v) => {
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b.preventDefault(), o({ x: v.x, y: v.y }), c(!0);
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},
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/* @__PURE__ */ f.jsx(
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" ",
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/* @__PURE__ */ f.jsx(
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return /* @__PURE__ */ f.jsx(f.Fragment, {});
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/* @__PURE__ */ f.jsx(
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return /* @__PURE__ */ f.jsx(f.Fragment, {});
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/* @__PURE__ */ f.jsx(
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/* @__PURE__ */ f.jsx(I0, { datasets: t.datasets || [] })
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const e = Ht((E) => E.content), t = Ht((E) => E.x), n = Ht((E) => E.y), r = Ht((E) => E.show), [i, a] = be(0), [o, s] = be(0), [c, u] = be({ width: 0, height: 0 }), p = Ie(null), h = fe((E) => E.delta), b = fe((E) => E.browserWidth), k = kr() + De, D = 5, w = at(() => {
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const e = fe((k) => k.browserWidth), t = fe((k) => k.marginWidth), n = De, r = kr() + De, [i, a] = be([0, 0]), [o, s] = be(!1), c = fe((k) => k.svgRef), u = fe((k) => k.domain), p = fe((k) => k.setDomain), h = (k) => {
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browserDomain: t,
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totalHeight: n,
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totalWidth: r,
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marginWidth: i
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}) {
|
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const a = e.domain, o =
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+
const a = e.domain, o = U0(a, t, r);
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|
return /* @__PURE__ */ f.jsx(
|
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|
"rect",
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{
|
|
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}
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|
);
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}
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|
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function
|
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|
+
function U0(e, t, n) {
|
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|
const r = t.end - t.start, i = (e.start - t.start) / r, a = (e.end - t.start) / r;
|
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|
return { start: i * n, end: a * n };
|
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|
}
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|
-
function
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|
+
function H0() {
|
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const e = xe((t) => t.ids);
|
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|
return Fl(), /* @__PURE__ */ f.jsxs(f.Fragment, { children: [
|
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|
-
/* @__PURE__ */ f.jsxs(
|
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/* @__PURE__ */ f.jsx(q0, {}),
|
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|
-
/* @__PURE__ */ f.jsx(Is, { id: "ruler", transform: "translate(0, 0)", loading: !1, error: void 0, children: /* @__PURE__ */ f.jsx(yu, {}) }),
|
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|
+
/* @__PURE__ */ f.jsxs(q0, { children: [
|
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/* @__PURE__ */ f.jsx($0, {}),
|
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-
|
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/* @__PURE__ */ f.jsx(
|
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+
/* @__PURE__ */ f.jsx(Is, { id: "ruler", transform: "translate(0, 0)", loading: !1, error: void 0, children: /* @__PURE__ */ f.jsx(_u, {}) }),
|
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|
+
/* @__PURE__ */ f.jsx(z0, {}),
|
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|
+
e.map((t) => /* @__PURE__ */ f.jsx(Zd, { id: t }, t)),
|
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|
+
/* @__PURE__ */ f.jsx(N0, {})
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|
] }),
|
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-
/* @__PURE__ */ f.jsx(
|
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-
/* @__PURE__ */ f.jsx(
|
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+
/* @__PURE__ */ f.jsx(r0, {}),
|
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/* @__PURE__ */ f.jsx(O0, {})
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|
] });
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|
}
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|
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function
|
|
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|
+
function _h({ browserStore: e, trackStore: t, externalDataStore: n }) {
|
|
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11231
|
const r = n ?? dc([]), i = ce(() => Jo(), []), a = ce(() => Qo(), []), o = ce(() => es(), []), s = ce(() => ts(), []), c = ce(
|
|
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|
() => ({
|
|
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|
browserStore: e,
|
|
@@ -11240,10 +11240,10 @@ function yh({ browserStore: e, trackStore: t, externalDataStore: n }) {
|
|
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|
}),
|
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|
[e, t, r, i, a, o, s]
|
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|
);
|
|
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|
-
return /* @__PURE__ */ f.jsx(pc, { value: c, children: /* @__PURE__ */ f.jsx(
|
|
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|
+
return /* @__PURE__ */ f.jsx(pc, { value: c, children: /* @__PURE__ */ f.jsx(H0, {}) });
|
|
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|
}
|
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|
-
const
|
|
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|
-
function
|
|
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|
+
const bh = Vs;
|
|
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|
+
function wh(e, t) {
|
|
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11247
|
return ce(() => Vs(e), t ?? []);
|
|
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11248
|
}
|
|
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11249
|
function Vs(e) {
|
|
@@ -11325,8 +11325,8 @@ function Vs(e) {
|
|
|
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|
setTitleSize: (r) => t({ titleSize: r })
|
|
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|
}));
|
|
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|
}
|
|
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|
-
const
|
|
11329
|
-
function
|
|
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|
+
const Sh = Zs;
|
|
11329
|
+
function kh(e, t) {
|
|
11330
11330
|
return ce(() => Zs(e), t ?? []);
|
|
11331
11331
|
}
|
|
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11332
|
function Zs(e = []) {
|
|
@@ -11437,31 +11437,31 @@ function Zs(e = []) {
|
|
|
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11437
|
}
|
|
11438
11438
|
}));
|
|
11439
11439
|
}
|
|
11440
|
-
const
|
|
11441
|
-
link: new ic({ uri:
|
|
11440
|
+
const W0 = "https://screen.api.wenglab.org/graphql", Y0 = new rc({
|
|
11441
|
+
link: new ic({ uri: W0 }),
|
|
11442
11442
|
cache: new nc(),
|
|
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|
devtools: {
|
|
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|
enabled: !0,
|
|
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|
name: "Genome Browser"
|
|
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|
}
|
|
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|
});
|
|
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|
-
function
|
|
11449
|
-
return /* @__PURE__ */ f.jsx(ec, { client:
|
|
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|
+
function Eh({ children: e }) {
|
|
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|
+
return /* @__PURE__ */ f.jsx(ec, { client: Y0, children: e });
|
|
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|
}
|
|
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|
-
function
|
|
11451
|
+
function G0(e, t, n, r) {
|
|
11452
11452
|
return r ? `M ${e} ${n * 0.1} L ${e + t} ${n / 2} L ${e} ${n * 0.9}` : `M ${e + t} ${n * 0.1} L ${e} ${n / 2} L ${e + t} ${n * 0.9}`;
|
|
11453
11453
|
}
|
|
11454
|
-
function
|
|
11455
|
-
return /* @__PURE__ */ f.jsx("path", { d:
|
|
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|
+
function V0(e) {
|
|
11455
|
+
return /* @__PURE__ */ f.jsx("path", { d: G0(e.x, e.width, e.height, e.opening), fill: e.color });
|
|
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11456
|
}
|
|
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|
-
const
|
|
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|
+
const Z0 = /* @__PURE__ */ new Map([
|
|
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11458
|
["stalk", (e) => e.stalk],
|
|
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11459
|
["gvar", (e) => e.default],
|
|
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11460
|
["gneg", (e) => pt(e.default, 0.9)]
|
|
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11461
|
]);
|
|
11462
|
-
function
|
|
11462
|
+
function X0(e) {
|
|
11463
11463
|
var n;
|
|
11464
|
-
const t = e.type.slice(0, 4) === "gpos" ? pt(e.colors.default, 1 - +e.type.replace(/gpos/g, "") / 100) : (n =
|
|
11464
|
+
const t = e.type.slice(0, 4) === "gpos" ? pt(e.colors.default, 1 - +e.type.replace(/gpos/g, "") / 100) : (n = Z0.get(e.type)) == null ? void 0 : n.call(null, e.colors);
|
|
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11465
|
return t === void 0 ? null : /* @__PURE__ */ f.jsx(
|
|
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11466
|
"rect",
|
|
11467
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|
{
|
|
@@ -11474,8 +11474,8 @@ function Z0(e) {
|
|
|
11474
11474
|
}
|
|
11475
11475
|
);
|
|
11476
11476
|
}
|
|
11477
|
-
function
|
|
11478
|
-
return e.x(e.highlight.end) - e.x(e.highlight.start) < 10 ? /* @__PURE__ */ f.jsx(
|
|
11477
|
+
function K0(e) {
|
|
11478
|
+
return e.x(e.highlight.end) - e.x(e.highlight.start) < 10 ? /* @__PURE__ */ f.jsx(J0, { highlight: e.highlight, x: e.x, height: e.height }) : /* @__PURE__ */ f.jsx(
|
|
11479
11479
|
"rect",
|
|
11480
11480
|
{
|
|
11481
11481
|
x: e.x(e.highlight.start),
|
|
@@ -11489,14 +11489,14 @@ function X0(e) {
|
|
|
11489
11489
|
}
|
|
11490
11490
|
);
|
|
11491
11491
|
}
|
|
11492
|
-
function
|
|
11492
|
+
function J0(e) {
|
|
11493
11493
|
const { highlight: t, height: n, x: r } = e, i = `M ${r(t.start) - 5} 0 L ${r(t.start)} ${n * 0.2} L ${r(t.start) + 5} 0`, a = `M ${r(t.start) - 5} ${n} L ${r(t.start)} ${n * 0.8} L ${r(t.start) + 5} ${n}`;
|
|
11494
11494
|
return /* @__PURE__ */ f.jsxs(f.Fragment, { children: [
|
|
11495
11495
|
/* @__PURE__ */ f.jsx("path", { d: i, stroke: t.color || "#ff0000", strokeWidth: 3, fill: "none" }),
|
|
11496
11496
|
/* @__PURE__ */ f.jsx("path", { d: a, stroke: t.color || "#ff0000", strokeWidth: 3, fill: "none" })
|
|
11497
11497
|
] });
|
|
11498
11498
|
}
|
|
11499
|
-
const
|
|
11499
|
+
const Q0 = lr`
|
|
11500
11500
|
query cytobands($assembly: String!, $chromosome: String) {
|
|
11501
11501
|
cytoband(assembly: $assembly, chromosome: $chromosome) {
|
|
11502
11502
|
stain
|
|
@@ -11507,21 +11507,21 @@ const J0 = lr`
|
|
|
11507
11507
|
}
|
|
11508
11508
|
}
|
|
11509
11509
|
}
|
|
11510
|
-
`,
|
|
11510
|
+
`, eh = {
|
|
11511
11511
|
default: "#000000",
|
|
11512
11512
|
centromere: "#880000",
|
|
11513
11513
|
stalk: "#ff0000"
|
|
11514
11514
|
};
|
|
11515
|
-
function
|
|
11515
|
+
function Lh({
|
|
11516
11516
|
assembly: e,
|
|
11517
11517
|
currentDomain: t
|
|
11518
11518
|
}) {
|
|
11519
|
-
const i = { ...t, color: "rgba(50,50,255,0.75)" }, a = "translate(0,0)", { data: o, loading: s, error: c } = tc(
|
|
11519
|
+
const i = { ...t, color: "rgba(50,50,255,0.75)" }, a = "translate(0,0)", { data: o, loading: s, error: c } = tc(Q0, {
|
|
11520
11520
|
variables: {
|
|
11521
11521
|
assembly: e,
|
|
11522
11522
|
chromosome: t.chromosome || ""
|
|
11523
11523
|
}
|
|
11524
|
-
}), u =
|
|
11524
|
+
}), u = eh;
|
|
11525
11525
|
if (s)
|
|
11526
11526
|
return /* @__PURE__ */ f.jsx("g", { width: 700, height: 20, children: /* @__PURE__ */ f.jsx("text", { x: "350", y: "15", textAnchor: "middle", style: { fontSize: "14px", fontFamily: "sans-serif" }, children: "Loading..." }) });
|
|
11527
11527
|
if (c)
|
|
@@ -11529,7 +11529,7 @@ function Eh({
|
|
|
11529
11529
|
"Error: ",
|
|
11530
11530
|
c.message
|
|
11531
11531
|
] }) });
|
|
11532
|
-
const p = o, h = { start: 0, end: Math.max(...p.cytoband.map((k) => k.coordinates.end)) }, b =
|
|
11532
|
+
const p = o, h = { start: 0, end: Math.max(...p.cytoband.map((k) => k.coordinates.end)) }, b = th(
|
|
11533
11533
|
{
|
|
11534
11534
|
start: h.start,
|
|
11535
11535
|
end: h.end,
|
|
@@ -11542,7 +11542,7 @@ function Eh({
|
|
|
11542
11542
|
p.cytoband.map((k, D) => {
|
|
11543
11543
|
const w = b(k.coordinates.start), E = b(k.coordinates.end) - w;
|
|
11544
11544
|
return k.stain === "acen" ? /* @__PURE__ */ f.jsx(
|
|
11545
|
-
|
|
11545
|
+
V0,
|
|
11546
11546
|
{
|
|
11547
11547
|
width: E,
|
|
11548
11548
|
x: w,
|
|
@@ -11551,10 +11551,10 @@ function Eh({
|
|
|
11551
11551
|
opening: v++ === 0
|
|
11552
11552
|
},
|
|
11553
11553
|
D
|
|
11554
|
-
) : /* @__PURE__ */ f.jsx(
|
|
11554
|
+
) : /* @__PURE__ */ f.jsx(X0, { type: k.stain, width: E, x: w, height: 20, colors: u, opacity: 1 }, D);
|
|
11555
11555
|
}),
|
|
11556
11556
|
i ? /* @__PURE__ */ f.jsx(
|
|
11557
|
-
|
|
11557
|
+
K0,
|
|
11558
11558
|
{
|
|
11559
11559
|
onMouseOut: () => {
|
|
11560
11560
|
},
|
|
@@ -11566,37 +11566,37 @@ function Eh({
|
|
|
11566
11566
|
) : null
|
|
11567
11567
|
] });
|
|
11568
11568
|
}
|
|
11569
|
-
function
|
|
11569
|
+
function th(e, t) {
|
|
11570
11570
|
return (n) => (n - e.start) * t / (e.end - e.start);
|
|
11571
11571
|
}
|
|
11572
|
-
function
|
|
11572
|
+
function Th(e, t, n) {
|
|
11573
11573
|
const r = n((a) => a.setTrackData), i = n((a) => a.isFetching);
|
|
11574
11574
|
Ee(() => {
|
|
11575
11575
|
i || (t.loading ? r(e, { data: null, error: null }) : t.error ? r(e, { data: null, error: t.error.message }) : t.data && r(e, { data: t.data, error: null }));
|
|
11576
11576
|
}, [t.data, t.loading, t.error, i, e, r]);
|
|
11577
11577
|
}
|
|
11578
11578
|
export {
|
|
11579
|
-
|
|
11579
|
+
_h as Browser,
|
|
11580
11580
|
Ot as ClipPath,
|
|
11581
|
-
|
|
11581
|
+
Lh as Cytobands,
|
|
11582
11582
|
Fe as DisplayMode,
|
|
11583
|
-
|
|
11584
|
-
|
|
11583
|
+
Eh as GQLWrapper,
|
|
11584
|
+
vh as Pastels,
|
|
11585
11585
|
me as TrackType,
|
|
11586
|
-
|
|
11587
|
-
|
|
11588
|
-
|
|
11589
|
-
|
|
11586
|
+
xh as Vibrant,
|
|
11587
|
+
bh as createBrowserStore,
|
|
11588
|
+
wh as createBrowserStoreMemo,
|
|
11589
|
+
ch as createDataStore,
|
|
11590
11590
|
dc as createDataStoreMemo,
|
|
11591
|
-
|
|
11592
|
-
|
|
11593
|
-
|
|
11594
|
-
|
|
11591
|
+
Sh as createTrackStore,
|
|
11592
|
+
kh as createTrackStoreMemo,
|
|
11593
|
+
lh as defineBigBedSchema,
|
|
11594
|
+
mh as fetchBigBedUrl,
|
|
11595
11595
|
Kl as renderDenseBigBedData,
|
|
11596
11596
|
Jl as renderSquishBigBedData,
|
|
11597
|
-
|
|
11597
|
+
hi as useBrowserScale,
|
|
11598
11598
|
fe as useBrowserStore,
|
|
11599
|
-
|
|
11599
|
+
Th as useCustomData,
|
|
11600
11600
|
et as useInteraction,
|
|
11601
11601
|
di as useMouseToIndex,
|
|
11602
11602
|
Cr as useRowHeight,
|