@weng-lab/genomebrowser 1.7.12 → 1.8.1

package/dist/{api → src/api}/fetchers.d.ts

@@ -18,6 +18,11 @@ export type FetcherContext<T extends Track = Track> = {
 };
 export type FetchFunction = (ctx: FetcherContext) => Promise<TrackDataState>;
 export declare function getBigDataRace(url: string, expandedDomain: Domain, preRenderedWidth: number, queries: QueryHooks): Promise<TrackDataState>;
+/**
+ * Fetch a BigBed/BigWig URL using the fetcher context.
+ * Useful for custom track fetchers that need to load .bb/.bw files.
+ */
+export declare function fetchBigBedUrl(url: string, ctx: FetcherContext): Promise<TrackDataState>;
 /**
  * Registry of fetcher functions by track type
  */

package/dist/src/components/tracks/custom/types.d.ts

@@ -0,0 +1,15 @@
+import { FetcherContext } from '../../../api/fetchers';
+import { TrackDataState } from '../../../store/dataStore';
+import { Config, DisplayMode, TrackDimensions, TrackType } from '../types';
+export interface CustomTrackConfig<Item = any> extends Config<Item> {
+    trackType: TrackType.Custom;
+    renderers: Partial<Record<DisplayMode, React.ComponentType<any>>>;
+    fetcher: (ctx: FetcherContext) => Promise<TrackDataState>;
+    settingsPanel?: React.ComponentType<{
+        id: string;
+    }>;
+}
+export interface CustomTrackProps<Data = any, Item = any> extends Config<Item> {
+    data: Data;
+    dimensions: TrackDimensions;
+}

package/dist/{components → src/components}/tracks/methylC/helpers.d.ts

@@ -1,5 +1,5 @@
 import { ValuedPoint, YRange } from '../bigwig/types';
-export declare function generateSignal2(data: ValuedPoint[], height: number, color: string, inverted?: boolean, range?: YRange): {
+export declare function generateSignal2(data: ValuedPoint[], height: number, color: string, inverted?: boolean, customRange?: YRange): {
     indicator: import("react/jsx-runtime").JSX.Element;
     values: import("react/jsx-runtime").JSX.Element;
 } | null;

package/dist/{components → src/components}/tracks/types.d.ts

@@ -7,7 +7,8 @@ export declare enum TrackType {
     LDTrack = "ldtrack",
     BulkBed = "bulkbed",
     MethylC = "methylc",
-    Manhattan = "manhattan"
+    Manhattan = "manhattan",
+    Custom = "custom"
 }
 export declare enum DisplayMode {
     Full = "full",

package/dist/{lib.d.ts → src/lib.d.ts}

@@ -8,16 +8,26 @@ import { TranscriptConfig, SquishTranscriptProps, PackTranscriptProps, Transcrip
 import { MethylCConfig, MethylCProps, MethylData } from './components/tracks/methylC/types';
 import { LDTrackConfig, LDProps, SNP } from './components/tracks/ldtrack/types';
 import { ManhattanTrackConfig, ManhattanPoint } from './components/tracks/manhattan/types';
+import { CustomTrackConfig, CustomTrackProps } from './components/tracks/custom/types';
 import { createBrowserStore, createBrowserStoreMemo, InitialBrowserState, BrowserStoreInstance } from './store/browserStore';
 import { createTrackStore, createTrackStoreMemo, Track, TrackStoreInstance } from './store/trackStore';
-import { createDataStore, createDataStoreMemo, DataStoreInstance } from './store/dataStore';
+import { createDataStore, createDataStoreMemo, DataStoreInstance, TrackDataState } from './store/dataStore';
 import { Highlight } from './components/highlight/types';
-import { DisplayMode, TrackType } from './components/tracks/types';
+import { DisplayMode, TrackType, Config, TrackDimensions, InteractionConfig, DisplayConfig } from './components/tracks/types';
 import { Vibrant, Pastels } from './utils/color';
 import { Domain, Chromosome } from './utils/types';
 import { default as GQLWrapper } from './components/browser/GQLWrapper';
 import { default as Cytobands } from './components/cytoband/cytobands';
 import { default as useCustomData } from './hooks/useCustomData';
+import { getBigDataRace, fetchBigBedUrl, FetcherContext, FetchFunction } from './api/fetchers';
+import { useXTransform } from './hooks/useXTransform';
+import { default as useInteraction } from './hooks/useInteraction';
+import { useMouseToIndex } from './hooks/useMousePosition';
+import { default as useBrowserScale } from './hooks/useBrowserScale';
+import { useRowHeight } from './hooks/useRowHeight';
+import { default as ClipPath } from './components/svg/clipPath';
+import { renderSquishBigBedData, renderDenseBigBedData } from './components/tracks/bigbed/helpers';
+import { useBrowserStore, useTrackStore } from './store/BrowserContext';
 export { Browser };
 export type { BigBedConfig, SquishBigBedProps, DenseBigBedProps, Rect };
 export type { BulkBedConfig, BulkBedProps, BulkBedDataset, BulkBedRect };
@@ -28,13 +38,27 @@ export type { TranscriptConfig, SquishTranscriptProps, PackTranscriptProps, Tran
 export type { MethylCConfig, MethylCProps, MethylData };
 export type { LDTrackConfig, LDProps, SNP };
 export type { ManhattanTrackConfig, ManhattanPoint };
+export type { CustomTrackConfig, CustomTrackProps };
 export { createBrowserStore, createBrowserStoreMemo, type InitialBrowserState, type BrowserStoreInstance };
 export { createTrackStore, createTrackStoreMemo, type Track, type TrackStoreInstance };
 export { createDataStore, createDataStoreMemo, type DataStoreInstance };
 export type { Highlight };
 export { DisplayMode, TrackType };
+export type { Config, TrackDimensions, InteractionConfig, DisplayConfig };
 export { Vibrant, Pastels };
 export type { Domain, Chromosome };
 export { GQLWrapper };
 export { Cytobands };
 export { useCustomData };
+export { getBigDataRace, fetchBigBedUrl };
+export type { FetcherContext, FetchFunction };
+export type { TrackDataState };
+export { useXTransform };
+export { useInteraction };
+export { useMouseToIndex };
+export { useBrowserScale };
+export { useRowHeight };
+export { ClipPath };
+export { renderSquishBigBedData, renderDenseBigBedData };
+export { useBrowserStore, useTrackStore };
+export { tfPeaksTrack } from '../custom/tfmotif/TfPeaks';

package/dist/{store → src/store}/trackStore.d.ts

@@ -8,13 +8,14 @@ import { LDTrackConfig } from '../components/tracks/ldtrack/types';
 import { MethylCConfig } from '../components/tracks/methylC/types';
 import { TrackType } from '../components/tracks/types';
 import { ManhattanTrackConfig } from '../components/tracks/manhattan/types';
+import { CustomTrackConfig } from '../components/tracks/custom/types';
 type WrapperDimensions = {
     trackMargin: number;
     titleSize: number;
     totalVerticalMargin: number;
     wrapperHeight: number;
 };
-export type Track = BigWigConfig | BigBedConfig | BulkBedConfig | TranscriptConfig | MotifConfig | ImportanceConfig | LDTrackConfig | MethylCConfig | ManhattanTrackConfig;
+export type Track = BigWigConfig | BigBedConfig | BulkBedConfig | TranscriptConfig | MotifConfig | ImportanceConfig | LDTrackConfig | MethylCConfig | ManhattanTrackConfig | CustomTrackConfig;
 export interface TrackStore {
     tracks: Track[];
     ids: string[];

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@weng-lab/genomebrowser",
   "private": false,
-  "version": "1.7.12",
+  "version": "1.8.1",
   "license": "MIT",
   "type": "module",
   "files": [