@weng-lab/genomebrowser 1.7.1-beta.1 → 1.7.2-beta.0

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@weng-lab/genomebrowser",
   "private": false,
-  "version": "1.7.1-beta.1",
+  "version": "1.7.2-beta.0",
   "license": "MIT",
   "type": "module",
   "files": [

package/dist/api-legacy/apiTypes.d.ts

@@ -1,85 +0,0 @@
-/**
- * All request and response types for the genome browser API
- */
-export interface BigRequest {
-    url: string;
-    chr1: string;
-    start: number;
-    end: number;
-    preRenderedWidth?: number;
-    zoomLevel?: number;
-}
-export interface BigResponse {
-    bigRequests: {
-        data: any;
-    }[];
-}
-export interface TranscriptRequest {
-    chromosome: string;
-    assembly: string;
-    start: number;
-    end: number;
-    version: number;
-}
-export interface TranscriptResponse {
-    gene: any;
-}
-export interface MotifRequest {
-    consensus_regex: string;
-    peaks_accession: string;
-    range: {
-        chromosome: string;
-        start: number;
-        end: number;
-    };
-    assembly: string;
-    prange: {
-        chrom: string;
-        chrom_start: number;
-        chrom_end: number;
-    };
-}
-export interface MotifResponse {
-    meme_occurrences: any[];
-    peaks: {
-        peaks: any[];
-    };
-}
-export interface LDRequest {
-    study: string[];
-}
-export interface LDResponse {
-    getSNPsforGWASStudies: {
-        snpid: string;
-        ldblock: string;
-        rsquare: number;
-        chromosome: string;
-        stop: number;
-        start: number;
-        ldblocksnpid: string;
-    }[];
-}
-export interface MotifRect {
-    start: number;
-    end: number;
-    pwm?: number[][];
-}
-export interface MethylCRequest {
-    plusStrand: {
-        cpgPlus: BigRequest;
-        chgPlus: BigRequest;
-        chhPlus: BigRequest;
-        depthPlus: BigRequest;
-    };
-    minusStrand: {
-        cpgMinus: BigRequest;
-        chgMinus: BigRequest;
-        chhMinus: BigRequest;
-        depthMinus: BigRequest;
-    };
-}
-export interface MethylCResponse {
-    bigRequests: {
-        data: any;
-    }[];
-}

package/dist/api-legacy/queryExecutor.d.ts

@@ -1,14 +0,0 @@
-import { AllRequests } from './requestBuilder';
-import { LazyQueryExecFunction, OperationVariables } from '@apollo/client';
-export interface QueryExecutors {
-    fetchBigData: LazyQueryExecFunction<unknown, OperationVariables>;
-    fetchGene: LazyQueryExecFunction<unknown, OperationVariables>;
-    fetchMotif: LazyQueryExecFunction<unknown, OperationVariables>;
-    fetchImportance: LazyQueryExecFunction<unknown, OperationVariables>;
-    fetchBulkBed: LazyQueryExecFunction<unknown, OperationVariables>;
-    fetchMethylC: LazyQueryExecFunction<unknown, OperationVariables>;
-}
-/**
- * Execute all queries concurrently based on built requests
- */
-export declare function executeAllQueries(requests: AllRequests, executors: QueryExecutors): Promise<void>;

package/dist/api-legacy/requestBuilder.d.ts

@@ -1,40 +0,0 @@
-import { Domain } from '../utils/types';
-import { Track } from '../store/trackStore';
-import { BigRequest, TranscriptRequest, MotifRequest } from './apiTypes';
-export interface AllRequests {
-    bigRequests: BigRequest[];
-    transcriptRequest?: TranscriptRequest;
-    motifRequest?: MotifRequest;
-    importanceRequests: BigRequest[];
-    bulkBedRequests: BigRequest[];
-    methylCRequest?: BigRequest[];
-}
-/**
- * Build BigWig/BigBed requests for given tracks
- */
-export declare function buildBigRequests(tracks: Track[], domain: Domain, preRenderedWidth: number): BigRequest[];
-/**`
- * Build BulkBed requests for given tracks
- */
-export declare function buildBulkBedRequests(tracks: Track[], domain: Domain): BigRequest[];
-/**
- * Build transcript request for given tracks (first transcript track found)
- */
-export declare function buildTranscriptRequest(tracks: Track[], domain: Domain): TranscriptRequest | undefined;
-/**
- * Build motif request for given tracks (first motif track found)
- */
-export declare function buildMotifRequest(tracks: Track[], domain: Domain): MotifRequest | undefined;
-/**
- * Build importance requests for given tracks (first importance track found)
- * Use currentDomain to get only the viewable region (avoids large requests)
- */
-export declare function buildImportanceRequests(tracks: Track[], currentDomain: Domain): BigRequest[];
-/**
- * Build LD request for given tracks (first LD track found)
- */
-export declare function buildMethylCRequest(tracks: Track[], domain: Domain, preRenderedWidth: number): BigRequest[] | undefined;
-/**
- * Build all requests for all track types in one coordinated call
- */
-export declare function buildAllRequests(tracks: Track[], expandedDomain: Domain, currentDomain: Domain, preRenderedWidth: number): AllRequests;

package/dist/api-legacy/resultsProcessor.d.ts

@@ -1,30 +0,0 @@
-import { ApolloError } from '@apollo/client';
-import { Track } from '../store/trackStore';
-import { BigResponse, TranscriptResponse, MotifResponse, LDResponse } from './apiTypes';
-export interface QueryResults {
-    bigData?: BigResponse;
-    geneData?: TranscriptResponse;
-    motifData?: MotifResponse;
-    importanceData?: BigResponse;
-    bulkBedData?: BigResponse;
-    snpData?: LDResponse;
-    bigError?: ApolloError;
-    geneError?: ApolloError;
-    motifError?: ApolloError;
-    importanceError?: ApolloError;
-    bulkBedError?: ApolloError;
-    snpError?: ApolloError;
-    methylCData?: BigResponse;
-    methylCError?: ApolloError;
-    ldData?: LDResponse;
-    ldError?: ApolloError;
-}
-export interface ProcessedResult {
-    trackId: string;
-    data: unknown;
-    error?: ApolloError;
-}
-/**
- * Process all query results and return organized data for each track
- */
-export declare function processAllResults(tracks: Track[], results: QueryResults): ProcessedResult[];