@weng-lab/genomebrowser 1.4.1 → 1.5.0

package/dist/components/tracks/importance/importance.d.ts

@@ -1,2 +1,2 @@
 import { ImportanceProps } from './types';
-export default function Importance({ data, annotations, dimensions, height, zeroLineProps }: ImportanceProps): import("react/jsx-runtime").JSX.Element;
+export default function Importance({ data, annotations, dimensions, height, zeroLineProps }: ImportanceProps): import("react/jsx-runtime").JSX.Element | null;

package/dist/components/tracks/ldtrack/genericld.d.ts

@@ -0,0 +1,16 @@
+import { TrackDimensions } from '../types';
+type GenericLDProps = {
+    id: string;
+    data: any[];
+    height: number;
+    color: string;
+    dimensions: TrackDimensions;
+    lead: string;
+    associatedSnps: string[];
+    onClick?: (data: any) => void;
+    onHover?: (data: any) => void;
+    onLeave?: (data: any) => void;
+    tooltip?: React.FC<any>;
+};
+export default function GenericLD({ id, data, lead, associatedSnps, height, color, dimensions, onClick, onHover, onLeave, tooltip, }: GenericLDProps): import("react/jsx-runtime").JSX.Element;
+export {};

package/dist/components/tracks/ldtrack/helpers.d.ts

@@ -0,0 +1,7 @@
+import { SNP } from './types';
+export declare const createArcPath: (sourceSnp: SNP, targetSnp: SNP, height: number, leadHeight: number, snpHeight: number) => string;
+export declare const getWidth: (score: string) => number;
+export declare const getRSquareForTarget: (snp: SNP, targetSnpId: string) => string;
+export declare const getPrimaryRSquare: (snp: SNP) => string;
+export declare const isLead: (snp: SNP) => boolean;
+export declare const getFill: (snp: SNP, color: string) => string;

package/dist/components/tracks/ldtrack/types.d.ts

@@ -2,6 +2,8 @@ import { Config, TrackDimensions, TrackType } from '../types';
 export interface LDTrackConfig extends Config<any> {
     trackType: TrackType.LDTrack;
     show?: string[];
+    lead?: string;
+    associatedSnps?: string[];
 }
 export type LDProps = {
     id: string;
@@ -15,6 +17,19 @@ export type LDProps = {
     onLeave?: (data: any) => void;
     tooltip?: React.FC<any>;
 };
+export type SNP = {
+    chromosome: string;
+    ldblock: number;
+    ldblocksnpid: string;
+    pixelEnd: number;
+    pixelStart: number;
+    rsquare: string;
+    snpid: string;
+    start: number;
+    stop: number;
+    sourceSnp?: string;
+    targetSnpId?: string;
+};
 export type Population = {
     population: string;
     subpopulation?: string;

package/dist/components/tracks/manhattan/scatter.d.ts

@@ -0,0 +1,2 @@
+import { ManhattanProps } from './types';
+export default function Scatter({ id, data, cutoffValue, cutoffLabel, associatedSnps, height, color, dimensions, onClick, onHover, onLeave, tooltip, }: ManhattanProps): import("react/jsx-runtime").JSX.Element;

package/dist/components/tracks/manhattan/types.d.ts

@@ -0,0 +1,30 @@
+import { Chromosome } from '../../../lib';
+import { Config, TrackDimensions, TrackType } from '../types';
+export interface ManhattanTrackConfig extends Config<any> {
+    trackType: TrackType.Manhattan;
+    cutoffValue?: number;
+    cutoffLabel?: string;
+    lead?: string;
+    associatedSnps?: string[];
+}
+export interface ManhattanProps {
+    id: string;
+    data: any;
+    cutoffValue?: number;
+    cutoffLabel?: string;
+    associatedSnps?: string[];
+    height: number;
+    color: string;
+    dimensions: TrackDimensions;
+    onClick?: (item: any) => void;
+    onHover?: (item: any) => void;
+    onLeave?: (item: any) => void;
+    tooltip?: (item: any) => React.ReactNode;
+}
+export type ManhattanPoint = {
+    chr: Chromosome;
+    start: number;
+    end: number;
+    snpId: string;
+    value: number;
+};

package/dist/components/tracks/types.d.ts

@@ -6,7 +6,8 @@ export declare enum TrackType {
     Importance = "importance",
     LDTrack = "ldtrack",
     BulkBed = "bulkbed",
-    MethylC = "methylc"
+    MethylC = "methylc",
+    Manhattan = "manhattan"
 }
 export declare enum DisplayMode {
     Full = "full",
@@ -14,7 +15,10 @@ export declare enum DisplayMode {
     Squish = "squish",
     Pack = "pack",
     Combined = "combined",
-    Split = "split"
+    Split = "split",
+    Scatter = "scatter",
+    LDBlock = "ldblock",
+    GenericLD = "genericld"
 }
 export interface InteractionConfig<Item> {
     onClick?: (item: Item) => void;