@weng-lab/genomebrowser 1.0.0-alpha.1 → 1.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -12061,35 +12061,35 @@ function qd(e) {
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  /* @__PURE__ */ d.jsx(
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  "path",
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  {
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- S45.356,33,46.168,33h5.052c1.533,0,2.78-1.247,2.78-2.78V23.78C54,22.247,52.753,21,51.22,21z M52,30.22\r
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- C52,30.65,51.65,31,51.22,31h-5.052c-1.624,0-3.019,0.932-3.64,2.432c-0.622,1.5-0.295,3.146,0.854,4.294l3.572,3.571\r
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- C23,2.35,23.35,2,23.78,2h6.439C30.65,2,31,2.35,31,2.78v5.052c0,1.624,0.932,3.019,2.432,3.64\r
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+ d: `M51.22,21h-5.052c-0.812,0-1.481-0.447-1.792-1.197s-0.153-1.54,0.42-2.114l3.572-3.571
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+ S45.356,33,46.168,33h5.052c1.533,0,2.78-1.247,2.78-2.78V23.78C54,22.247,52.753,21,51.22,21z M52,30.22
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+ C52,30.65,51.65,31,51.22,31h-5.052c-1.624,0-3.019,0.932-3.64,2.432c-0.622,1.5-0.295,3.146,0.854,4.294l3.572,3.571
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+ c-0.306,0.306-0.801,0.304-1.104,0l-4.553-4.553c-0.305-0.305-0.305-0.8,0-1.104l3.572-3.571c1.148-1.148,1.476-2.794,0.854-4.294
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+ C23,2.35,23.35,2,23.78,2h6.439C30.65,2,31,2.35,31,2.78v5.052c0,1.624,0.932,3.019,2.432,3.64
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  l-3.572,3.571c-1.148,1.148-1.476,2.794-0.854,4.294c0.621,1.5,2.016,2.432,3.64,2.432h5.052C51.65,23,52,23.35,52,23.78V30.22z`
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  }
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  ),
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  /* @__PURE__ */ d.jsx(
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  "path",
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  {
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- d: `M27,18c-4.963,0-9,4.037-9,9s4.037,9,9,9s9-4.037,9-9S31.963,18,27,18z M27,34c-3.859,0-7-3.141-7-7s3.141-7,7-7\r
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+ d: `M27,18c-4.963,0-9,4.037-9,9s4.037,9,9,9s9-4.037,9-9S31.963,18,27,18z M27,34c-3.859,0-7-3.141-7-7s3.141-7,7-7
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  s7,3.141,7,7S30.859,34,27,34z`
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  }
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  )
@@ -12542,13 +12542,13 @@ function Kd({
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  function Zd(e, t) {
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  return e.coordinates.start === t.coordinates.start ? e.coordinates.end - t.coordinates.end : e.coordinates.start - t.coordinates.start;
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  }
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- function ep(e, t) {
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+ function e0(e, t) {
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  var s;
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  const n = e.transcripts.reduce((c, u) => [...c, ...u.exons || []], []).sort(Zd), i = n.length === 0 ? [] : [{ coordinates: { ...n[0].coordinates }, UTRs: n[0].UTRs && [...n[0].UTRs] }], o = new Set(e.transcripts.map((c) => c.color));
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  n.slice(1).forEach((c) => {
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  c.coordinates.start < i[i.length - 1].coordinates.end ? (i[i.length - 1].UTRs = [...i[i.length - 1].UTRs || [], ...c.UTRs || []], i[i.length - 1].coordinates.end = Math.max(c.coordinates.end, i[i.length - 1].coordinates.end)) : i.push({ coordinates: { ...c.coordinates }, UTRs: c.UTRs && [...c.UTRs] });
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  }), i.forEach((c) => {
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- c.UTRs = tp(c.UTRs || []);
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+ c.UTRs = t0(c.UTRs || []);
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  });
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  let a = o.size === 1 ? o.values().next().value : void 0;
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  return t && (a = (s = e.name) != null && s.includes(t) ? "#ff5555" : a), {
@@ -12563,7 +12563,7 @@ function ep(e, t) {
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  color: a
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  };
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  }
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- function tp(e) {
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+ function t0(e) {
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  if (e.length === 0) return [];
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  const t = [{ coordinates: { ...e[0].coordinates } }];
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  return e.slice(1).forEach((r) => {
@@ -12575,9 +12575,9 @@ function tp(e) {
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  }
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  function Ic(e, t, r, n) {
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  var a;
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- const i = rp(e, t), o = {
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- exons: ((a = i.exons) == null ? void 0 : a.reduce((s, c) => s + op(c, r / 2, r, n), "")) || "",
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- introns: ip(
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+ const i = r0(e, t), o = {
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+ exons: ((a = i.exons) == null ? void 0 : a.reduce((s, c) => s + o0(c, r / 2, r, n), "")) || "",
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+ introns: i0(
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  i.coordinates.start,
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  i.coordinates.end,
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  i.strand,
@@ -12588,7 +12588,7 @@ function Ic(e, t, r, n) {
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  };
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  return { transcript: i, paths: o };
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  }
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- function rp(e, t) {
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+ function r0(e, t) {
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  var r;
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  return {
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  strand: e.strand,
@@ -12616,10 +12616,10 @@ function rp(e, t) {
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  })) || []
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  };
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  }
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- function np(e) {
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+ function n0(e) {
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  return e.reduce((t, r) => (r.transcripts.forEach((n) => t.push({ ...n, strand: r.strand })), t), []).sort((t, r) => t.coordinates.start - r.coordinates.start);
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  }
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- function ip(e, t, r, n, i, o) {
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+ function i0(e, t, r, n, i, o) {
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  let a = "";
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  if (e = e < 0 ? 0 : e, t = t > o ? o : t, r === "+")
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  for (let s = e + 10; s < t - 10; s += 20)
@@ -12629,7 +12629,7 @@ function ip(e, t, r, n, i, o) {
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  a += Lt(s + i, n - i) + ne(s, n) + ne(s + i, n + i) + ne(s, n) + ne(s + i, n - i);
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  return a + " M " + e + " " + n + " L " + t + " " + n;
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  }
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- function op(e, t, r, n) {
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+ function o0(e, t, r, n) {
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  var f, h;
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  if (e.coordinates.start > n || e.coordinates.end < 0) return "";
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  const i = ((f = e.UTRs) == null ? void 0 : f.filter((p) => p.coordinates.start === e.coordinates.start)) || [], o = ((h = e.UTRs) == null ? void 0 : h.filter((p) => p.coordinates.end === e.coordinates.end)) || [], a = t - r * 0.2, s = t + r * 0.2, c = t - r * 0.3, u = t + r * 0.3;
@@ -12653,7 +12653,7 @@ const Nc = (e, t) => {
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  function Pc(e) {
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  return e / 6 < 10 ? e < 10 ? e : 10 : e / 6;
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  }
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- function ap({
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+ function a0({
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  id: e,
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  data: t,
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  geneName: r,
@@ -12666,7 +12666,7 @@ function ap({
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  tooltip: u
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  }) {
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  const { totalWidth: l, sideWidth: f } = i, { x: h, reverseX: p } = yt(l), v = on(t.length, e), b = Pc(v) * 1.25, m = G(
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- () => tn((t == null ? void 0 : t.map((x) => ep(x, r))) || [], h, b).map((x, T) => ({
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+ () => tn((t == null ? void 0 : t.map((x) => e0(x, r))) || [], h, b).map((x, T) => ({
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  y: T * v,
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  transcripts: x.map((w) => Ic(w, h, v, l))
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  })),
@@ -12729,7 +12729,7 @@ function ap({
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  ))
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  ] });
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  }
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- function sp({
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+ function s0({
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  id: e,
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  data: t,
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  height: r,
@@ -12741,7 +12741,7 @@ function sp({
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  tooltip: c
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  }) {
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  const { totalWidth: u, sideWidth: l } = n, { x: f, reverseX: h } = yt(u), p = on(t.length, e), v = Pc(p) * 1.25, b = G(
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- () => tn(np(t || []), f, v).map((S, x) => ({
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+ () => tn(n0(t || []), f, v).map((S, x) => ({
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  y: x * p,
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  transcripts: S.map((T) => Ic(T, f, p, u))
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  })),
@@ -12804,7 +12804,7 @@ function sp({
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  ))
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  ] });
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  }
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- function cp(e, t, r) {
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+ function c0(e, t, r) {
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  return G(
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  () => e.map((n) => {
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  const i = t.slice(n.coordinates[0], n.coordinates[1] + 1).map((s) => s.importance), o = [Math.min(...i), Math.max(...i)], a = r(o[1]);
@@ -12817,36 +12817,36 @@ function cp(e, t, r) {
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  [e, r]
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  );
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  }
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- function up(e, t) {
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+ function u0(e, t) {
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  const r = G(
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- () => lp(e) ? e.importance.map((a, s) => ({
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+ () => l0(e) ? e.importance.map((a, s) => ({
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  base: e.sequence.charAt(s),
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  importance: a
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  })) : e,
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  [e]
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- ), n = G(() => hp(r, (a) => a.importance), [r]), i = fp(n, { start: t, end: 0 }), o = et(dp(i), [n, t]);
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+ ), n = G(() => h0(r, (a) => a.importance), [r]), i = f0(n, { start: t, end: 0 }), o = et(d0(i), [n, t]);
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  return [r, o, i];
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  }
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- function lp(e) {
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+ function l0(e) {
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  return e.sequence !== void 0;
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  }
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- function fp(e, t) {
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+ function f0(e, t) {
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  return (r) => t.start + (t.end - t.start) * ((r - e.start) / (e.end - e.start));
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  }
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- function hp(e, t) {
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+ function h0(e, t) {
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  const r = e.map(t), n = Math.min(...r), i = Math.max(...r);
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  return {
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  start: n > 0 ? 0 : n,
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  end: i < 0 ? 0 : i
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  };
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  }
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- function dp(e) {
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+ function d0(e) {
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  return (t) => {
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  const r = e((t < 0, t)), n = e((t < 0, 0)), i = Math.abs(n - r) / 100;
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  return [r * (t < 0 ? -1 : 1), i, t < 0 ? "scale(1,-1)" : ""];
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  };
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  }
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- const pp = (e) => /* @__PURE__ */ d.jsxs("g", { children: [
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+ const p0 = (e) => /* @__PURE__ */ d.jsxs("g", { children: [
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  /* @__PURE__ */ d.jsx(
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  "path",
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  {
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