@weng-lab/genomebrowser-ui 0.3.6 → 0.4.0-beta.1

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Files changed (91) hide show
  1. package/.env.local +1 -1
  2. package/dist/TrackSelect/Folders/biosamples/shared/BiosampleViewSelector.d.ts +7 -0
  3. package/dist/TrackSelect/Folders/biosamples/shared/createFolder.d.ts +1 -13
  4. package/dist/TrackSelect/Folders/biosamples/shared/toTrack.d.ts +20 -0
  5. package/dist/TrackSelect/Folders/biosamples/shared/types.d.ts +4 -13
  6. package/dist/TrackSelect/Folders/genes/shared/columns.d.ts +2 -2
  7. package/dist/TrackSelect/Folders/genes/shared/createFolder.d.ts +1 -3
  8. package/dist/TrackSelect/Folders/genes/shared/toTrack.d.ts +18 -0
  9. package/dist/TrackSelect/Folders/genes/shared/types.d.ts +2 -0
  10. package/dist/TrackSelect/Folders/index.d.ts +6 -12
  11. package/dist/TrackSelect/Folders/mohd/data/human.json.d.ts +2948 -0
  12. package/dist/TrackSelect/Folders/mohd/human.d.ts +1 -0
  13. package/dist/TrackSelect/Folders/mohd/shared/MohdGroupingCell.d.ts +2 -0
  14. package/dist/TrackSelect/Folders/mohd/shared/MohdTreeItem.d.ts +3 -0
  15. package/dist/TrackSelect/Folders/mohd/shared/MohdViewSelector.d.ts +7 -0
  16. package/dist/TrackSelect/Folders/mohd/shared/columns.d.ts +5 -0
  17. package/dist/TrackSelect/Folders/mohd/shared/config.d.ts +42 -0
  18. package/dist/TrackSelect/Folders/mohd/shared/createFolder.d.ts +9 -0
  19. package/dist/TrackSelect/Folders/mohd/shared/toTrack.d.ts +9 -0
  20. package/dist/TrackSelect/Folders/mohd/shared/types.d.ts +40 -0
  21. package/dist/TrackSelect/Folders/other-tracks/shared/toTrack.d.ts +5 -0
  22. package/dist/TrackSelect/Folders/other-tracks/shared/types.d.ts +1 -0
  23. package/dist/TrackSelect/Folders/types.d.ts +23 -55
  24. package/dist/TrackSelect/TrackSelect.d.ts +10 -7
  25. package/dist/TrackSelect/TreeView/TreeViewWrapper.d.ts +1 -1
  26. package/dist/TrackSelect/buildSelectedTree.d.ts +15 -0
  27. package/dist/TrackSelect/managedTracks.d.ts +13 -0
  28. package/dist/TrackSelect/resolveFolderView.d.ts +2 -0
  29. package/dist/TrackSelect/trackContext.d.ts +5 -0
  30. package/dist/TrackSelect/types.d.ts +12 -33
  31. package/dist/genomebrowser-ui.es.js +2231 -1732
  32. package/dist/genomebrowser-ui.es.js.map +1 -1
  33. package/dist/lib.d.ts +4 -4
  34. package/dist/muiLicense.d.ts +1 -0
  35. package/package.json +6 -3
  36. package/src/TrackSelect/Dialogs/ClearDialog.tsx +3 -8
  37. package/src/TrackSelect/Dialogs/ResetDialog.tsx +5 -4
  38. package/src/TrackSelect/FolderList/FolderCard.tsx +1 -1
  39. package/src/TrackSelect/Folders/biosamples/shared/BiosampleViewSelector.tsx +33 -0
  40. package/src/TrackSelect/Folders/biosamples/shared/createFolder.ts +39 -58
  41. package/src/TrackSelect/Folders/biosamples/shared/toTrack.ts +138 -0
  42. package/src/TrackSelect/Folders/biosamples/shared/types.ts +4 -16
  43. package/src/TrackSelect/Folders/genes/shared/columns.tsx +2 -2
  44. package/src/TrackSelect/Folders/genes/shared/createFolder.ts +11 -31
  45. package/src/TrackSelect/Folders/genes/shared/toTrack.ts +59 -0
  46. package/src/TrackSelect/Folders/genes/shared/types.ts +2 -0
  47. package/src/TrackSelect/Folders/index.ts +14 -17
  48. package/src/TrackSelect/Folders/mohd/data/human.json +2945 -0
  49. package/src/TrackSelect/Folders/mohd/human.ts +10 -0
  50. package/src/TrackSelect/Folders/mohd/shared/MohdGroupingCell.tsx +68 -0
  51. package/src/TrackSelect/Folders/mohd/shared/MohdTreeItem.tsx +17 -0
  52. package/src/TrackSelect/Folders/mohd/shared/MohdViewSelector.tsx +33 -0
  53. package/src/TrackSelect/Folders/mohd/shared/columns.tsx +79 -0
  54. package/src/TrackSelect/Folders/mohd/shared/config.tsx +71 -0
  55. package/src/TrackSelect/Folders/mohd/shared/createFolder.ts +144 -0
  56. package/src/TrackSelect/Folders/mohd/shared/toTrack.ts +164 -0
  57. package/src/TrackSelect/Folders/mohd/shared/types.ts +46 -0
  58. package/src/TrackSelect/Folders/other-tracks/shared/createFolder.ts +13 -14
  59. package/src/TrackSelect/Folders/other-tracks/shared/toTrack.ts +17 -0
  60. package/src/TrackSelect/Folders/other-tracks/shared/types.ts +1 -0
  61. package/src/TrackSelect/Folders/types.ts +26 -69
  62. package/src/TrackSelect/TrackSelect.tsx +301 -257
  63. package/src/TrackSelect/TreeView/CustomTreeItem.tsx +9 -9
  64. package/src/TrackSelect/TreeView/TreeViewWrapper.tsx +84 -6
  65. package/src/TrackSelect/buildSelectedTree.ts +145 -0
  66. package/src/TrackSelect/managedTracks.ts +92 -0
  67. package/src/TrackSelect/resolveFolderView.ts +20 -0
  68. package/src/TrackSelect/trackContext.ts +9 -0
  69. package/src/TrackSelect/types.ts +14 -39
  70. package/src/lib.ts +13 -7
  71. package/src/muiLicense.ts +9 -0
  72. package/src/vite-env.d.ts +9 -0
  73. package/test/TrackSelect.test.tsx +435 -0
  74. package/test/main.tsx +36 -352
  75. package/test/mocks/logo-test.tsx +11 -0
  76. package/test/mohdDisplay.test.tsx +45 -0
  77. package/test/startup.test.ts +206 -0
  78. package/test/trackSelectState.test.ts +176 -0
  79. package/vite.config.ts +1 -0
  80. package/vitest.config.ts +20 -0
  81. package/dist/TrackSelect/Folders/biosamples/shared/AssayToggle.d.ts +0 -18
  82. package/dist/TrackSelect/Folders/biosamples/shared/treeBuilder.d.ts +0 -28
  83. package/dist/TrackSelect/Folders/genes/shared/treeBuilder.d.ts +0 -13
  84. package/dist/TrackSelect/Folders/other-tracks/shared/treeBuilder.d.ts +0 -4
  85. package/dist/TrackSelect/store.d.ts +0 -4
  86. package/src/TrackSelect/Folders/NEW.md +0 -929
  87. package/src/TrackSelect/Folders/biosamples/shared/AssayToggle.tsx +0 -78
  88. package/src/TrackSelect/Folders/biosamples/shared/treeBuilder.ts +0 -224
  89. package/src/TrackSelect/Folders/genes/shared/treeBuilder.ts +0 -45
  90. package/src/TrackSelect/Folders/other-tracks/shared/treeBuilder.ts +0 -34
  91. package/src/TrackSelect/store.ts +0 -117
@@ -4,29 +4,26 @@ import { mouseBiosamplesFolder } from "./biosamples/mouse";
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  import { humanGenesFolder } from "./genes/human";
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  import { mouseGenesFolder } from "./genes/mouse";
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  import { humanOtherTracksFolder } from "./other-tracks/human";
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+ import { humanMohdFolder } from "./mohd/human";
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- export {
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- type Assembly,
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- type FolderDefinition,
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- type FolderRuntimeConfig,
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- } from "./types";
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+ export { type Assembly, type FolderDefinition, type FolderView } from "./types";
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  export type { BiosampleRowInfo } from "./biosamples/shared/types";
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+ export type { BiosampleTrackContext } from "./biosamples/shared/toTrack";
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  export type { GeneRowInfo } from "./genes/shared/types";
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+ export type { GeneTrackContext } from "./genes/shared/toTrack";
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+ export type { MohdRowInfo } from "./mohd/shared/types";
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+ export type { MohdTrackContext } from "./mohd/shared/toTrack";
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  export type { OtherTrackInfo } from "./other-tracks/shared/types";
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+ export type { OtherTracksTrackContext } from "./other-tracks/shared/toTrack";
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- /**
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- * Registry of folders available for each assembly.
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- *
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- * Each assembly can have multiple folders (e.g., biosamples, genes, etc.).
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- * TrackSelect receives the folders for the current assembly and renders
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- * them as tabs or a folder selector.
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- *
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- * To add a new folder:
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- * 1. Create a folder config file (e.g., folders/genes/human.ts)
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- * 2. Import and add it to the appropriate assembly array below
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- */
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+ // Registry of folders by assembly
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  export const foldersByAssembly: Record<Assembly, FolderDefinition[]> = {
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- GRCh38: [humanGenesFolder, humanBiosamplesFolder, humanOtherTracksFolder],
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+ GRCh38: [
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+ humanGenesFolder,
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+ humanBiosamplesFolder,
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+ humanMohdFolder,
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+ humanOtherTracksFolder,
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+ ],
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  mm10: [mouseGenesFolder, mouseBiosamplesFolder],
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  };