@weng-lab/genomebrowser-ui 0.3.6-beta.0 → 0.4.0-beta.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.env.local +1 -1
- package/dist/TrackSelect/Custom/TfPeaks.d.ts +1 -2
- package/dist/TrackSelect/Custom/green-motifs.json.d.ts +20430 -0
- package/dist/TrackSelect/Folders/biosamples/shared/BiosampleViewSelector.d.ts +7 -0
- package/dist/TrackSelect/Folders/biosamples/shared/createFolder.d.ts +1 -13
- package/dist/TrackSelect/Folders/biosamples/shared/toTrack.d.ts +20 -0
- package/dist/TrackSelect/Folders/biosamples/shared/types.d.ts +4 -13
- package/dist/TrackSelect/Folders/genes/shared/createFolder.d.ts +1 -3
- package/dist/TrackSelect/Folders/genes/shared/toTrack.d.ts +18 -0
- package/dist/TrackSelect/Folders/index.d.ts +6 -12
- package/dist/TrackSelect/Folders/mohd/data/human.json.d.ts +2948 -0
- package/dist/TrackSelect/Folders/mohd/human.d.ts +1 -0
- package/dist/TrackSelect/Folders/mohd/shared/MohdGroupingCell.d.ts +2 -0
- package/dist/TrackSelect/Folders/mohd/shared/MohdTreeItem.d.ts +3 -0
- package/dist/TrackSelect/Folders/mohd/shared/MohdViewSelector.d.ts +7 -0
- package/dist/TrackSelect/Folders/mohd/shared/columns.d.ts +5 -0
- package/dist/TrackSelect/Folders/mohd/shared/config.d.ts +42 -0
- package/dist/TrackSelect/Folders/mohd/shared/createFolder.d.ts +9 -0
- package/dist/TrackSelect/Folders/mohd/shared/toTrack.d.ts +9 -0
- package/dist/TrackSelect/Folders/mohd/shared/types.d.ts +40 -0
- package/dist/TrackSelect/Folders/other-tracks/shared/toTrack.d.ts +5 -0
- package/dist/TrackSelect/Folders/other-tracks/shared/types.d.ts +1 -0
- package/dist/TrackSelect/Folders/types.d.ts +23 -55
- package/dist/TrackSelect/TrackSelect.d.ts +10 -7
- package/dist/TrackSelect/TreeView/TreeViewWrapper.d.ts +1 -1
- package/dist/TrackSelect/buildSelectedTree.d.ts +15 -0
- package/dist/TrackSelect/managedTracks.d.ts +13 -0
- package/dist/TrackSelect/resolveFolderView.d.ts +2 -0
- package/dist/TrackSelect/trackContext.d.ts +5 -0
- package/dist/TrackSelect/types.d.ts +12 -33
- package/dist/genomebrowser-ui.es.js +2470 -2258
- package/dist/genomebrowser-ui.es.js.map +1 -1
- package/dist/lib.d.ts +4 -4
- package/dist/muiLicense.d.ts +1 -0
- package/package.json +6 -3
- package/src/TrackSelect/Custom/TfPeaks.tsx +81 -60
- package/src/TrackSelect/Dialogs/ResetDialog.tsx +3 -2
- package/src/TrackSelect/FolderList/FolderCard.tsx +1 -1
- package/src/TrackSelect/Folders/biosamples/shared/BiosampleViewSelector.tsx +33 -0
- package/src/TrackSelect/Folders/biosamples/shared/createFolder.ts +39 -58
- package/src/TrackSelect/Folders/biosamples/shared/toTrack.ts +138 -0
- package/src/TrackSelect/Folders/biosamples/shared/types.ts +4 -16
- package/src/TrackSelect/Folders/genes/shared/createFolder.ts +10 -31
- package/src/TrackSelect/Folders/genes/shared/toTrack.ts +59 -0
- package/src/TrackSelect/Folders/index.ts +15 -18
- package/src/TrackSelect/Folders/mohd/data/human.json +2945 -0
- package/src/TrackSelect/Folders/mohd/human.ts +10 -0
- package/src/TrackSelect/Folders/mohd/shared/MohdGroupingCell.tsx +68 -0
- package/src/TrackSelect/Folders/mohd/shared/MohdTreeItem.tsx +17 -0
- package/src/TrackSelect/Folders/mohd/shared/MohdViewSelector.tsx +33 -0
- package/src/TrackSelect/Folders/mohd/shared/columns.tsx +79 -0
- package/src/TrackSelect/Folders/mohd/shared/config.tsx +71 -0
- package/src/TrackSelect/Folders/mohd/shared/createFolder.ts +144 -0
- package/src/TrackSelect/Folders/mohd/shared/toTrack.ts +164 -0
- package/src/TrackSelect/Folders/mohd/shared/types.ts +46 -0
- package/src/TrackSelect/Folders/other-tracks/shared/createFolder.ts +13 -14
- package/src/TrackSelect/Folders/other-tracks/shared/toTrack.ts +17 -0
- package/src/TrackSelect/Folders/other-tracks/shared/types.ts +1 -0
- package/src/TrackSelect/Folders/types.ts +26 -69
- package/src/TrackSelect/TrackSelect.tsx +299 -255
- package/src/TrackSelect/TreeView/CustomTreeItem.tsx +6 -6
- package/src/TrackSelect/TreeView/TreeViewWrapper.tsx +84 -6
- package/src/TrackSelect/buildSelectedTree.ts +145 -0
- package/src/TrackSelect/managedTracks.ts +92 -0
- package/src/TrackSelect/resolveFolderView.ts +20 -0
- package/src/TrackSelect/trackContext.ts +9 -0
- package/src/TrackSelect/types.ts +14 -39
- package/src/lib.ts +13 -7
- package/src/muiLicense.ts +9 -0
- package/src/vite-env.d.ts +9 -0
- package/test/TrackSelect.test.tsx +435 -0
- package/test/main.tsx +37 -353
- package/test/mocks/logo-test.tsx +11 -0
- package/test/mohdDisplay.test.tsx +45 -0
- package/test/startup.test.ts +206 -0
- package/test/trackSelectState.test.ts +176 -0
- package/vite.config.ts +1 -0
- package/vitest.config.ts +20 -0
- package/dist/TrackSelect/Custom/TF-ChIP-Canonical-Motifs-w-Trimmed.json.d.ts +0 -42210
- package/dist/TrackSelect/Folders/biosamples/shared/AssayToggle.d.ts +0 -18
- package/dist/TrackSelect/Folders/biosamples/shared/treeBuilder.d.ts +0 -28
- package/dist/TrackSelect/Folders/genes/shared/treeBuilder.d.ts +0 -13
- package/dist/TrackSelect/Folders/other-tracks/shared/treeBuilder.d.ts +0 -4
- package/dist/TrackSelect/store.d.ts +0 -4
- package/src/TrackSelect/Folders/NEW.md +0 -929
- package/src/TrackSelect/Folders/biosamples/shared/AssayToggle.tsx +0 -78
- package/src/TrackSelect/Folders/biosamples/shared/treeBuilder.ts +0 -224
- package/src/TrackSelect/Folders/genes/shared/treeBuilder.ts +0 -45
- package/src/TrackSelect/Folders/other-tracks/shared/treeBuilder.ts +0 -34
- package/src/TrackSelect/store.ts +0 -117
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import { FolderRuntimeConfig } from '../../types';
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export interface AssayToggleProps {
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updateConfig: (partial: Partial<FolderRuntimeConfig>) => void;
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folderId: string;
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label: string;
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config: FolderRuntimeConfig;
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}
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/**
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* Biosample-specific toolbar component that toggles between
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* sample-grouped and assay-grouped views.
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*
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* When toggled, it updates the folder's runtime config to switch:
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* - columns: Different column definitions for each view
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* - groupingModel: ["ontology", "displayName"] vs ["assay", "ontology"]
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* - leafField: "assay" vs "displayName"
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* - buildTree: Different tree builder function
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*/
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export declare function AssayToggle({ updateConfig, folderId, label, config, }: AssayToggleProps): import("react/jsx-runtime").JSX.Element;
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import { TreeViewBaseItem } from '@mui/x-tree-view';
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import { ExtendedTreeItemProps } from '../../../types';
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import { BiosampleRowInfo } from './types';
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/**
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* Builds tree in the sorted by assay view
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* Hierarchy: Assay -> Ontology -> DisplayName (leaf)
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*
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* This is the reverse of the default view - instead of grouping by sample first,
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* we group by assay first, making displayName the leaf node.
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*
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* @param selectedIds - list of selected row IDs
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* @param rowById - Mapping between an id and its BiosampleRowInfo object
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* @param rootLabel - Label for the root node
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* @param folderId - Folder ID to prefix tree item IDs with
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* @returns tree items for the RichTreeView
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*/
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export declare function buildSortedAssayTreeView(selectedIds: string[], rowById: Map<string, BiosampleRowInfo>, rootLabel?: string, folderId?: string): TreeViewBaseItem<ExtendedTreeItemProps>[];
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/**
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* Builds tree in the default view (sorted by ontology)
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* Hierarchy: Ontology -> DisplayName -> Experiment
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*
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* @param selectedIds - list of selected row IDs
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* @param rowById - Mapping between an id and its BiosampleRowInfo object
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* @param rootLabel - Label for the root node
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* @param folderId - Folder ID to prefix tree item IDs with
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* @returns tree items for the RichTreeView
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*/
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export declare function buildTreeView(selectedIds: string[], rowById: Map<string, BiosampleRowInfo>, rootLabel?: string, folderId?: string): TreeViewBaseItem<ExtendedTreeItemProps>[];
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import { TreeViewBaseItem } from '@mui/x-tree-view';
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import { ExtendedTreeItemProps } from '../../../types';
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import { GeneRowInfo } from './types';
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/**
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* Builds a flat tree structure for the TreeView panel (selected items)
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* Since genes have no grouping, this is a simple root -> leaf structure
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*
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* @param selectedIds - Array of selected row IDs
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* @param rowById - Map of row ID to row data
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* @param rootLabel - Label for the root node
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* @returns Tree structure for RichTreeView
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*/
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export declare function buildTreeView(selectedIds: string[], rowById: Map<string, GeneRowInfo>, rootLabel?: string): TreeViewBaseItem<ExtendedTreeItemProps>[];
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import { TreeViewBaseItem } from '@mui/x-tree-view';
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import { ExtendedTreeItemProps } from '../../../types';
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import { OtherTrackInfo } from './types';
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export declare function buildTreeView(selectedIds: string[], rowById: Map<string, OtherTrackInfo>, rootLabel?: string): TreeViewBaseItem<ExtendedTreeItemProps>[];
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import { StoreApi, UseBoundStore } from 'zustand';
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import { SelectionAction, SelectionState } from './types';
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export type SelectionStoreInstance = UseBoundStore<StoreApi<SelectionState & SelectionAction>>;
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export declare function createSelectionStore(folderIds: string[], storageKey?: string, initialSelection?: Map<string, Set<string>>): UseBoundStore<StoreApi<SelectionState & SelectionAction>>;
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