@weng-lab/genomebrowser-ui 0.3.6-beta.0 → 0.4.0-beta.0

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Files changed (90) hide show
  1. package/.env.local +1 -1
  2. package/dist/TrackSelect/Custom/TfPeaks.d.ts +1 -2
  3. package/dist/TrackSelect/Custom/green-motifs.json.d.ts +20430 -0
  4. package/dist/TrackSelect/Folders/biosamples/shared/BiosampleViewSelector.d.ts +7 -0
  5. package/dist/TrackSelect/Folders/biosamples/shared/createFolder.d.ts +1 -13
  6. package/dist/TrackSelect/Folders/biosamples/shared/toTrack.d.ts +20 -0
  7. package/dist/TrackSelect/Folders/biosamples/shared/types.d.ts +4 -13
  8. package/dist/TrackSelect/Folders/genes/shared/createFolder.d.ts +1 -3
  9. package/dist/TrackSelect/Folders/genes/shared/toTrack.d.ts +18 -0
  10. package/dist/TrackSelect/Folders/index.d.ts +6 -12
  11. package/dist/TrackSelect/Folders/mohd/data/human.json.d.ts +2948 -0
  12. package/dist/TrackSelect/Folders/mohd/human.d.ts +1 -0
  13. package/dist/TrackSelect/Folders/mohd/shared/MohdGroupingCell.d.ts +2 -0
  14. package/dist/TrackSelect/Folders/mohd/shared/MohdTreeItem.d.ts +3 -0
  15. package/dist/TrackSelect/Folders/mohd/shared/MohdViewSelector.d.ts +7 -0
  16. package/dist/TrackSelect/Folders/mohd/shared/columns.d.ts +5 -0
  17. package/dist/TrackSelect/Folders/mohd/shared/config.d.ts +42 -0
  18. package/dist/TrackSelect/Folders/mohd/shared/createFolder.d.ts +9 -0
  19. package/dist/TrackSelect/Folders/mohd/shared/toTrack.d.ts +9 -0
  20. package/dist/TrackSelect/Folders/mohd/shared/types.d.ts +40 -0
  21. package/dist/TrackSelect/Folders/other-tracks/shared/toTrack.d.ts +5 -0
  22. package/dist/TrackSelect/Folders/other-tracks/shared/types.d.ts +1 -0
  23. package/dist/TrackSelect/Folders/types.d.ts +23 -55
  24. package/dist/TrackSelect/TrackSelect.d.ts +10 -7
  25. package/dist/TrackSelect/TreeView/TreeViewWrapper.d.ts +1 -1
  26. package/dist/TrackSelect/buildSelectedTree.d.ts +15 -0
  27. package/dist/TrackSelect/managedTracks.d.ts +13 -0
  28. package/dist/TrackSelect/resolveFolderView.d.ts +2 -0
  29. package/dist/TrackSelect/trackContext.d.ts +5 -0
  30. package/dist/TrackSelect/types.d.ts +12 -33
  31. package/dist/genomebrowser-ui.es.js +2470 -2258
  32. package/dist/genomebrowser-ui.es.js.map +1 -1
  33. package/dist/lib.d.ts +4 -4
  34. package/dist/muiLicense.d.ts +1 -0
  35. package/package.json +6 -3
  36. package/src/TrackSelect/Custom/TfPeaks.tsx +81 -60
  37. package/src/TrackSelect/Dialogs/ResetDialog.tsx +3 -2
  38. package/src/TrackSelect/FolderList/FolderCard.tsx +1 -1
  39. package/src/TrackSelect/Folders/biosamples/shared/BiosampleViewSelector.tsx +33 -0
  40. package/src/TrackSelect/Folders/biosamples/shared/createFolder.ts +39 -58
  41. package/src/TrackSelect/Folders/biosamples/shared/toTrack.ts +138 -0
  42. package/src/TrackSelect/Folders/biosamples/shared/types.ts +4 -16
  43. package/src/TrackSelect/Folders/genes/shared/createFolder.ts +10 -31
  44. package/src/TrackSelect/Folders/genes/shared/toTrack.ts +59 -0
  45. package/src/TrackSelect/Folders/index.ts +15 -18
  46. package/src/TrackSelect/Folders/mohd/data/human.json +2945 -0
  47. package/src/TrackSelect/Folders/mohd/human.ts +10 -0
  48. package/src/TrackSelect/Folders/mohd/shared/MohdGroupingCell.tsx +68 -0
  49. package/src/TrackSelect/Folders/mohd/shared/MohdTreeItem.tsx +17 -0
  50. package/src/TrackSelect/Folders/mohd/shared/MohdViewSelector.tsx +33 -0
  51. package/src/TrackSelect/Folders/mohd/shared/columns.tsx +79 -0
  52. package/src/TrackSelect/Folders/mohd/shared/config.tsx +71 -0
  53. package/src/TrackSelect/Folders/mohd/shared/createFolder.ts +144 -0
  54. package/src/TrackSelect/Folders/mohd/shared/toTrack.ts +164 -0
  55. package/src/TrackSelect/Folders/mohd/shared/types.ts +46 -0
  56. package/src/TrackSelect/Folders/other-tracks/shared/createFolder.ts +13 -14
  57. package/src/TrackSelect/Folders/other-tracks/shared/toTrack.ts +17 -0
  58. package/src/TrackSelect/Folders/other-tracks/shared/types.ts +1 -0
  59. package/src/TrackSelect/Folders/types.ts +26 -69
  60. package/src/TrackSelect/TrackSelect.tsx +299 -255
  61. package/src/TrackSelect/TreeView/CustomTreeItem.tsx +6 -6
  62. package/src/TrackSelect/TreeView/TreeViewWrapper.tsx +84 -6
  63. package/src/TrackSelect/buildSelectedTree.ts +145 -0
  64. package/src/TrackSelect/managedTracks.ts +92 -0
  65. package/src/TrackSelect/resolveFolderView.ts +20 -0
  66. package/src/TrackSelect/trackContext.ts +9 -0
  67. package/src/TrackSelect/types.ts +14 -39
  68. package/src/lib.ts +13 -7
  69. package/src/muiLicense.ts +9 -0
  70. package/src/vite-env.d.ts +9 -0
  71. package/test/TrackSelect.test.tsx +435 -0
  72. package/test/main.tsx +37 -353
  73. package/test/mocks/logo-test.tsx +11 -0
  74. package/test/mohdDisplay.test.tsx +45 -0
  75. package/test/startup.test.ts +206 -0
  76. package/test/trackSelectState.test.ts +176 -0
  77. package/vite.config.ts +1 -0
  78. package/vitest.config.ts +20 -0
  79. package/dist/TrackSelect/Custom/TF-ChIP-Canonical-Motifs-w-Trimmed.json.d.ts +0 -42210
  80. package/dist/TrackSelect/Folders/biosamples/shared/AssayToggle.d.ts +0 -18
  81. package/dist/TrackSelect/Folders/biosamples/shared/treeBuilder.d.ts +0 -28
  82. package/dist/TrackSelect/Folders/genes/shared/treeBuilder.d.ts +0 -13
  83. package/dist/TrackSelect/Folders/other-tracks/shared/treeBuilder.d.ts +0 -4
  84. package/dist/TrackSelect/store.d.ts +0 -4
  85. package/src/TrackSelect/Folders/NEW.md +0 -929
  86. package/src/TrackSelect/Folders/biosamples/shared/AssayToggle.tsx +0 -78
  87. package/src/TrackSelect/Folders/biosamples/shared/treeBuilder.ts +0 -224
  88. package/src/TrackSelect/Folders/genes/shared/treeBuilder.ts +0 -45
  89. package/src/TrackSelect/Folders/other-tracks/shared/treeBuilder.ts +0 -34
  90. package/src/TrackSelect/store.ts +0 -117
@@ -1,18 +0,0 @@
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- import { FolderRuntimeConfig } from '../../types';
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- export interface AssayToggleProps {
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- updateConfig: (partial: Partial<FolderRuntimeConfig>) => void;
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- folderId: string;
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- label: string;
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- config: FolderRuntimeConfig;
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- }
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- /**
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- * Biosample-specific toolbar component that toggles between
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- * sample-grouped and assay-grouped views.
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- *
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- * When toggled, it updates the folder's runtime config to switch:
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- * - columns: Different column definitions for each view
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- * - groupingModel: ["ontology", "displayName"] vs ["assay", "ontology"]
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- * - leafField: "assay" vs "displayName"
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- * - buildTree: Different tree builder function
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- */
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- export declare function AssayToggle({ updateConfig, folderId, label, config, }: AssayToggleProps): import("react/jsx-runtime").JSX.Element;
@@ -1,28 +0,0 @@
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- import { TreeViewBaseItem } from '@mui/x-tree-view';
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- import { ExtendedTreeItemProps } from '../../../types';
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- import { BiosampleRowInfo } from './types';
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- /**
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- * Builds tree in the sorted by assay view
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- * Hierarchy: Assay -> Ontology -> DisplayName (leaf)
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- *
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- * This is the reverse of the default view - instead of grouping by sample first,
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- * we group by assay first, making displayName the leaf node.
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- *
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- * @param selectedIds - list of selected row IDs
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- * @param rowById - Mapping between an id and its BiosampleRowInfo object
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- * @param rootLabel - Label for the root node
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- * @param folderId - Folder ID to prefix tree item IDs with
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- * @returns tree items for the RichTreeView
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- */
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- export declare function buildSortedAssayTreeView(selectedIds: string[], rowById: Map<string, BiosampleRowInfo>, rootLabel?: string, folderId?: string): TreeViewBaseItem<ExtendedTreeItemProps>[];
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- /**
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- * Builds tree in the default view (sorted by ontology)
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- * Hierarchy: Ontology -> DisplayName -> Experiment
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- *
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- * @param selectedIds - list of selected row IDs
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- * @param rowById - Mapping between an id and its BiosampleRowInfo object
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- * @param rootLabel - Label for the root node
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- * @param folderId - Folder ID to prefix tree item IDs with
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- * @returns tree items for the RichTreeView
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- */
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- export declare function buildTreeView(selectedIds: string[], rowById: Map<string, BiosampleRowInfo>, rootLabel?: string, folderId?: string): TreeViewBaseItem<ExtendedTreeItemProps>[];
@@ -1,13 +0,0 @@
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- import { TreeViewBaseItem } from '@mui/x-tree-view';
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- import { ExtendedTreeItemProps } from '../../../types';
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- import { GeneRowInfo } from './types';
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- /**
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- * Builds a flat tree structure for the TreeView panel (selected items)
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- * Since genes have no grouping, this is a simple root -> leaf structure
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- *
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- * @param selectedIds - Array of selected row IDs
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- * @param rowById - Map of row ID to row data
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- * @param rootLabel - Label for the root node
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- * @returns Tree structure for RichTreeView
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- */
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- export declare function buildTreeView(selectedIds: string[], rowById: Map<string, GeneRowInfo>, rootLabel?: string): TreeViewBaseItem<ExtendedTreeItemProps>[];
@@ -1,4 +0,0 @@
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- import { TreeViewBaseItem } from '@mui/x-tree-view';
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- import { ExtendedTreeItemProps } from '../../../types';
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- import { OtherTrackInfo } from './types';
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- export declare function buildTreeView(selectedIds: string[], rowById: Map<string, OtherTrackInfo>, rootLabel?: string): TreeViewBaseItem<ExtendedTreeItemProps>[];
@@ -1,4 +0,0 @@
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- import { StoreApi, UseBoundStore } from 'zustand';
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- import { SelectionAction, SelectionState } from './types';
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- export type SelectionStoreInstance = UseBoundStore<StoreApi<SelectionState & SelectionAction>>;
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- export declare function createSelectionStore(folderIds: string[], storageKey?: string, initialSelection?: Map<string, Set<string>>): UseBoundStore<StoreApi<SelectionState & SelectionAction>>;