npm - @weng-lab/genomebrowser-ui - Versions diffs - 0.2.8 → 0.2.10 - Mend

@weng-lab/genomebrowser-ui 0.2.8 → 0.2.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (8) hide show

package/dist/TrackSelect/Folders/biosamples/data/mouse.json.d.ts +457 -410
package/dist/genomebrowser-ui.es.js +37 -37
package/package.json +2 -2
package/src/TrackSelect/Folders/biosamples/biosample.go +254 -0
package/src/TrackSelect/Folders/biosamples/data/mouse.json +456 -410
package/src/TrackSelect/Folders/biosamples/data/notes.md +17 -0
package/test/main.tsx +1 -1
package/vite.config.ts +3 -0

package/dist/genomebrowser-ui.es.js CHANGED Viewed

@@ -87,7 +87,7 @@ function ws() {
             return "Portal";
           case H:
             return l.displayName || "Context";
-          case W:
+          case x:
             return (l._context.displayName || "Context") + ".Consumer";
           case K:
             var g = l.render;
@@ -253,7 +253,7 @@ React keys must be passed directly to JSX without using spread:
     function _(l) {
       return typeof l == "object" && l !== null && l.$$typeof === f;
     }
-    var u = M, f = Symbol.for("react.transitional.element"), p = Symbol.for("react.portal"), h = Symbol.for("react.fragment"), U = Symbol.for("react.strict_mode"), V = Symbol.for("react.profiler"), W = Symbol.for("react.consumer"), H = Symbol.for("react.context"), K = Symbol.for("react.forward_ref"), T = Symbol.for("react.suspense"), w = Symbol.for("react.suspense_list"), I = Symbol.for("react.memo"), k = Symbol.for("react.lazy"), Y = Symbol.for("react.activity"), re = Symbol.for("react.client.reference"), j = u.__CLIENT_INTERNALS_DO_NOT_USE_OR_WARN_USERS_THEY_CANNOT_UPGRADE, Q = Object.prototype.hasOwnProperty, y = Array.isArray, D = console.createTask ? console.createTask : function() {
+    var u = M, f = Symbol.for("react.transitional.element"), p = Symbol.for("react.portal"), h = Symbol.for("react.fragment"), U = Symbol.for("react.strict_mode"), V = Symbol.for("react.profiler"), x = Symbol.for("react.consumer"), H = Symbol.for("react.context"), K = Symbol.for("react.forward_ref"), T = Symbol.for("react.suspense"), w = Symbol.for("react.suspense_list"), I = Symbol.for("react.memo"), k = Symbol.for("react.lazy"), Y = Symbol.for("react.activity"), re = Symbol.for("react.client.reference"), j = u.__CLIENT_INTERNALS_DO_NOT_USE_OR_WARN_USERS_THEY_CANNOT_UPGRADE, Q = Object.prototype.hasOwnProperty, y = Array.isArray, D = console.createTask ? console.createTask : function() {
       return null;
     };
     u = {
@@ -288,9 +288,9 @@ React keys must be passed directly to JSX without using spread:
     };
   })()), ie;
 }
-var We;
+var xe;
 function fs() {
-  return We || (We = 1, process.env.NODE_ENV === "production" ? de.exports = Ss() : de.exports = ws()), de.exports;
+  return xe || (xe = 1, process.env.NODE_ENV === "production" ? de.exports = Ss() : de.exports = ws()), de.exports;
 }
 var a = fs();
 function Vs(e) {
@@ -325,12 +325,12 @@ function Vs(e) {
     }
   );
 }
-const xe = {
+const We = {
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   includeHeaders: !0,
   outliersFactor: 1.5
 };
-function Ws(e) {
+function xs(e) {
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@@ -341,7 +341,7 @@ function Ws(e) {
     GroupingCellComponent: d
   } = e, r = d ?? Vs, t = Ns();
   ge(() => {
-    t.current && t.current.autosizeColumns && t.current.autosizeColumns(xe);
+    t.current && t.current.autosizeColumns && t.current.autosizeColumns(We);
   }, [s, i, o]);
   const F = P(() => {
     const p = {
@@ -370,7 +370,7 @@ function Ws(e) {
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           columns: s,
           getRowId: (p) => p.id,
-          autosizeOptions: xe,
+          autosizeOptions: We,
           rowGroupingModel: i,
           groupingColDef: {
             leafField: o,
@@ -416,7 +416,7 @@ function Ws(e) {
     }
   ) });
 }
-function xs({
+function Ws({
   open: e,
   onClose: s,
   onConfirm: i,
@@ -770,8 +770,8 @@ const qs = Se("div")(({ theme: e }) => ({
     getLabelProps: h,
     getGroupTransitionProps: U,
     status: V
-  } = hs({ id: o, itemId: n, children: d, label: C, disabled: N, rootRef: i }), W = bs(n), H = js(W.icon, t), K = (T) => {
-    T.stopPropagation(), r == null || r(W);
+  } = hs({ id: o, itemId: n, children: d, label: C, disabled: N, rootRef: i }), x = bs(n), H = js(x.icon, t), K = (T) => {
+    T.stopPropagation(), r == null || r(x);
   };
   return /* @__PURE__ */ a.jsx(us, { ...E(), children: /* @__PURE__ */ a.jsxs(Us, { ..._(F), children: [
     /* @__PURE__ */ a.jsxs(qs, { ...u(), children: [
@@ -781,7 +781,7 @@ const qs = Se("div")(({ theme: e }) => ({
         vs,
         {
           ...h({
-            icon: W.icon === "removeable" ? /* @__PURE__ */ a.jsx(
+            icon: x.icon === "removeable" ? /* @__PURE__ */ a.jsx(
               R,
               {
                 onClick: K,
@@ -802,9 +802,9 @@ const qs = Se("div")(({ theme: e }) => ({
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             ) : H,
             expandable: (V.expandable && V.expanded).toString(),
-            isAssayItem: W.isAssayItem,
-            assayName: W.assayName,
-            id: W.id,
+            isAssayItem: x.isAssayItem,
+            assayName: x.assayName,
+            id: x.id,
             renderIcon: t
           })
         }
@@ -964,7 +964,7 @@ function ai({
 }) {
   const [F, E] = J(!1), [_, u] = J(!1), [f, p] = J(!1), [h, U] = J(
     () => Be(e)
-  ), [V, W] = J(
+  ), [V, x] = J(
     () => e.length > 1 ? "folder-list" : "folder-detail"
   ), H = P(() => e.map((c) => c.id), [e]), K = ls(null);
   K.current || (K.current = Zs(
@@ -977,7 +977,7 @@ function ai({
   );
   ge(() => {
     var c;
-    U(Be(e)), e.some((m) => m.id === I) || k(((c = e[0]) == null ? void 0 : c.id) ?? ""), e.length <= 1 && W("folder-detail");
+    U(Be(e)), e.some((m) => m.id === I) || k(((c = e[0]) == null ? void 0 : c.id) ?? ""), e.length <= 1 && x("folder-detail");
   }, [e, I, k]);
   const y = P(() => e.find((c) => c.id === I) ?? e[0], [e, I]), D = P(() => {
     if (y)
@@ -995,11 +995,11 @@ function ai({
     const m = w.get(c.id);
     return m && m.size > 0;
   }).map((c) => {
-    const m = h.get(c.id), x = (m == null ? void 0 : m.buildTree) ?? c.buildTree;
+    const m = h.get(c.id), W = (m == null ? void 0 : m.buildTree) ?? c.buildTree;
     return {
       folderId: c.id,
       items: Ge(
-        x(
+        W(
           Array.from(w.get(c.id) ?? []),
           c.rowById
         ),
@@ -1010,26 +1010,26 @@ function ai({
   }), [e, w, h]), l = os(
     (c) => {
       y && U((m) => {
-        const x = m.get(y.id);
-        if (!x) return m;
+        const W = m.get(y.id);
+        if (!W) return m;
         const B = new Map(m);
-        return B.set(y.id, { ...x, ...c }), B;
+        return B.set(y.id, { ...W, ...c }), B;
       });
     },
     [y]
   ), g = (c) => {
-    k(c), W("folder-detail");
+    k(c), x("folder-detail");
   }, A = () => {
-    W("folder-list");
+    x("folder-list");
   }, S = (c) => {
     if (!y) return;
     const m = new Set(
       Array.from(c).filter((B) => y.rowById.has(B))
     );
-    let x = m.size;
+    let W = m.size;
     if (w.forEach((B, Ne) => {
-      Ne !== y.id && (x += B.size);
-    }), x > z) {
+      Ne !== y.id && (W += B.size);
+    }), W > z) {
       E(!0);
       return;
     }
@@ -1039,7 +1039,7 @@ function ai({
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     if (!m || !((Ne = c.allExpAccessions) != null && Ne.length))
       return;
-    const x = w.get(m) ?? /* @__PURE__ */ new Set(), B = new Set(x);
+    const W = w.get(m) ?? /* @__PURE__ */ new Set(), B = new Set(W);
     c.allExpAccessions.forEach((is) => B.delete(is)), Y(m, B);
   }, ee = () => {
     const c = Ee(w);
@@ -1054,8 +1054,8 @@ function ai({
     p(!0);
   }, _e = () => {
     if (p(!1), !N) return;
-    N.forEach((m, x) => {
-      Y(x, new Set(m));
+    N.forEach((m, W) => {
+      Y(W, new Set(m));
     }), H.forEach((m) => {
       N.has(m) || Y(m, /* @__PURE__ */ new Set());
     });
@@ -1142,7 +1142,7 @@ function ai({
                     onFolderSelect: g
                   }
                 ) : /* @__PURE__ */ a.jsx(
-                  Ws,
+                  xs,
                   {
                     rows: $,
                     columns: D.columns,
@@ -1235,7 +1235,7 @@ function ai({
         }
       ),
       /* @__PURE__ */ a.jsx(
-        xs,
+        Ws,
         {
           open: _,
           onClose: () => u(!1),
@@ -1756,7 +1756,7 @@ const Aa = /* @__PURE__ */ JSON.parse(`[{"name":"aggregate-biosample-data","coll
   label: "Human Biosamples",
   description: "Epigenomic data from human tissue samples, primary cells, cell lines, and organoids.",
   data: Ra
-}), ba = /* @__PURE__ */ JSON.parse('[{"name":"aggregate-biosample-data","collection":"Core","ontology":"aggregate","lifeStage":"N/A","sampleType":"aggregate","displayName":"Aggregate data, all ENCODE Biosamples","assays":[{"id":"ccre-aggregate","assay":"ccre","url":"https://downloads.wenglab.org/mm10-cCREs.DCC.bigBed","experimentAccession":"","fileAccession":"mm10-cCREs.DCC"},{"id":"dnase-aggregate","assay":"dnase","url":"https://downloads.wenglab.org/DNase_MM10_ENCODE_DEC2024_merged_nanrm.bigWig","experimentAccession":"","fileAccession":"DNase_MM10_ENCODE_DEC2024_merged_nanrm"},{"id":"h3k4me3-aggregate","assay":"h3k4me3","url":"https://downloads.wenglab.org/H3K4me3_MM10_ENCODE_DEC2024_merged_nanrm.bigWig","experimentAccession":"","fileAccession":"H3K4me3_All_ENCODE_MAR20_2024_merged"},{"id":"h3k27ac-aggregate","assay":"h3k27ac","url":"https://downloads.wenglab.org/H3K27ac_MM10_ENCODE_DEC2024_merged_nanrm.bigWig","experimentAccession":"","fileAccession":"H3K27ac_All_ENCODE_MAR20_2024_merged"},{"id":"ctcf-aggregate","assay":"ctcf","url":"https://downloads.wenglab.org/CTCF_MM10_ENCODE_DEC2024_merged_nanrm.bigWig","experimentAccession":"","fileAccession":"CTCF_All_ENCODE_MAR20_2024_merged"},{"id":"atac-aggregate","assay":"atac","url":"https://downloads.wenglab.org/ATAC_MM10_ENCODE_DEC2024_merged_nanrm.bigWig","experimentAccession":"","fileAccession":"ATAC_All_ENCODE_MAR20_2024_merged"}]},{"name":"strain_C57BL/6_brown_adipose_tissue_tissue_male_adult_24_weeks_ENCDO956IXV","collection":"Partial","ontology":"adipose","lifeStage":"adult","sampleType":"tissue","displayName":"brown adipose tissue, male adult (24 weeks) strain B6NCrl C57BL/6","assays":[{"id":"h3k4me3-ENCFF409WOB","assay":"h3k4me3","url":"https://downloads.wenglab.org/Registry-V4/ENCFF409WOB.bigWig","experimentAccession":"ENCSR000CFB","fileAccession":"ENCFF409WOB"},{"id":"h3k27ac-ENCFF476CKA","assay":"h3k27ac","url":"https://downloads.wenglab.org/Registry-V4/ENCFF476CKA.bigWig","experimentAccession":"ENCSR000CEZ","fileAccession":"ENCFF476CKA"},{"id":"ccre-ENCFF409WOB_ENCFF476CKA","assay":"ccre","url":"https://downloads.wenglab.org/Registry-V4/ENCFF409WOB_ENCFF476CKA.bigBed","experimentAccession":"","fileAccession":"ENCFF409WOB_ENCFF476CKA"}]},{"name":"strain_C57BL/6_fat_pad_tissue_male_adult_8_weeks_ENCDO072AAA","collection":"Partial","ontology":"adipose","lifeStage":"adult","sampleType":"tissue","displayName":"fat pad, male adult (2 months) strain C57BL/6J C57BL/6","assays":[{"id":"dnase-ENCFF899BWR","assay":"dnase","url":"https://downloads.wenglab.org/Registry-V4/ENCFF899BWR.bigWig","experimentAccession":"ENCSR000CMZ","fileAccession":"ENCFF899BWR"},{"id":"ccre-ENCFF899BWR","assay":"ccre","url":"https://downloads.wenglab.org/Registry-V4/ENCFF899BWR.bigBed","experimentAccession":"","fileAccession":"ENCFF899BWR"}]},{"name":"strain_C57BL/6_gonadal_fat_pad_tissue_male_adult_8_weeks_ENCDO072AAA","collection":"Partial","ontology":"adipose","lifeStage":"adult","sampleType":"tissue","displayName":"gonadal fat pad, male adult (2 months) strain C57BL/6J 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C57BL/6JxCAST/EiJ","assays":[{"id":"dnase-ENCFF431GVW","assay":"dnase","url":"https://downloads.wenglab.org/Registry-V4/ENCFF431GVW.bigWig","experimentAccession":"ENCSR923UKN","fileAccession":"ENCFF431GVW"},{"id":"ccre-ENCFF431GVW","assay":"ccre","url":"https://downloads.wenglab.org/Registry-V4/ENCFF431GVW.bigBed","experimentAccession":"","fileAccession":"ENCFF431GVW"}]},{"name":"strain_B6CASTF1/J_adrenal_gland_tissue_female_14_days_ENCDO509HIY","collection":"Partial","ontology":"adrenal gland","lifeStage":"adult","sampleType":"tissue","displayName":"adrenal gland, female postnatal (14 days) strain B6CASTF1/J 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