@weng-lab/genomebrowser-ui 0.2.7 → 0.2.9

package/src/TrackSelect/Folders/biosamples/data/mouse.json

@@ -1,56 +1,5 @@
 {
   "tracks": [
-    {
-      "name": "aggregate-biosample-data",
-      "ontology": "aggregate",
-      "lifeStage": "N/A",
-      "sampleType": "aggregate",
-      "displayName": "Aggregate data, all ENCODE Biosamples",
-      "assays": [
-        {
-          "id": "ccre-aggregate",
-          "assay": "ccre",
-          "url": "https://downloads.wenglab.org/mm10-cCREs.DCC.bigBed",
-          "experimentAccession": "",
-          "fileAccession": "mm10-cCREs.DCC"
-        },
-        {
-          "id": "dnase-aggregate",
-          "assay": "dnase",
-          "url": "https://downloads.wenglab.org/DNase_MM10_ENCODE_DEC2024_merged_nanrm.bigWig",
-          "experimentAccession": "",
-          "fileAccession": "DNase_MM10_ENCODE_DEC2024_merged_nanrm"
-        },
-        {
-          "id": "h3k4me3-aggregate",
-          "assay": "h3k4me3",
-          "url": "https://downloads.wenglab.org/H3K4me3_MM10_ENCODE_DEC2024_merged_nanrm.bigWig",
-          "experimentAccession": "",
-          "fileAccession": "H3K4me3_All_ENCODE_MAR20_2024_merged"
-        },
-        {
-          "id": "h3k27ac-aggregate",
-          "assay": "h3k27ac",
-          "url": "https://downloads.wenglab.org/H3K27ac_MM10_ENCODE_DEC2024_merged_nanrm.bigWig",
-          "experimentAccession": "",
-          "fileAccession": "H3K27ac_All_ENCODE_MAR20_2024_merged"
-        },
-        {
-          "id": "ctcf-aggregate",
-          "assay": "ctcf",
-          "url": "https://downloads.wenglab.org/CTCF_MM10_ENCODE_DEC2024_merged_nanrm.bigWig",
-          "experimentAccession": "",
-          "fileAccession": "CTCF_All_ENCODE_MAR20_2024_merged"
-        },
-        {
-          "id": "atac-aggregate",
-          "assay": "atac",
-          "url": "https://downloads.wenglab.org/ATAC_MM10_ENCODE_DEC2024_merged_nanrm.bigWig",
-          "experimentAccession": "",
-          "fileAccession": "ATAC_All_ENCODE_MAR20_2024_merged"
-        }
-      ]
-    },
     {
       "name": "strain_C57BL/6_brown_adipose_tissue_tissue_male_adult_24_weeks_ENCDO956IXV",
       "ontology": "adipose",
@@ -2905,6 +2854,13 @@
           "experimentAccession": "ENCSR273UFV",
           "fileAccession": "ENCFF614CGI"
         },
+        {
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF330GHF.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF330GHF"
+        },
         {
           "id": "rnaseq-ENCFF687VSF",
           "assay": "rnaseq",
@@ -2949,6 +2905,13 @@
           "experimentAccession": "ENCSR559FAJ",
           "fileAccession": "ENCFF369OWR"
         },
+        {
+          "id": "chromhmm-ENCFF739VQW",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF739VQW.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF739VQW"
+        },
         {
           "id": "rnaseq-ENCFF369FKH",
           "assay": "rnaseq",
@@ -2993,6 +2956,13 @@
           "experimentAccession": "ENCSR903GMO",
           "fileAccession": "ENCFF059AWY"
         },
+        {
+          "id": "chromhmm-ENCFF768SII",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF768SII.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF768SII"
+        },
         {
           "id": "rnaseq-ENCFF137ONR",
           "assay": "rnaseq",
@@ -3044,6 +3014,13 @@
           "experimentAccession": "ENCSR810HQR",
           "fileAccession": "ENCFF097JFT"
         },
+        {
+          "id": "chromhmm-ENCFF684IVK",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF684IVK.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF684IVK"
+        },
         {
           "id": "rnaseq-ENCFF484SND",
           "assay": "rnaseq",
@@ -3088,6 +3065,13 @@
           "experimentAccession": "ENCSR976LWP",
           "fileAccession": "ENCFF233ZYJ"
         },
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF296VJK.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF296VJK"
+        },
         {
           "id": "rnaseq-ENCFF604LEL",
           "assay": "rnaseq",
@@ -3132,6 +3116,13 @@
           "experimentAccession": "ENCSR836PUC",
           "fileAccession": "ENCFF178LJZ"
         },
+        {
+          "id": "chromhmm-ENCFF508RSJ",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF508RSJ.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF508RSJ"
+        },
         {
           "id": "rnaseq-ENCFF084ZJY",
           "assay": "rnaseq",
@@ -3190,6 +3181,13 @@
           "experimentAccession": "ENCSR310MLB",
           "fileAccession": "ENCFF196JTB"
         },
+        {
+          "id": "chromhmm-ENCFF850ZVL",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF850ZVL.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF850ZVL"
+        },
         {
           "id": "rnaseq-ENCFF431GTN",
           "assay": "rnaseq",
@@ -3301,6 +3299,13 @@
           "experimentAccession": "ENCSR012YAB",
           "fileAccession": "ENCFF455EOK"
         },
+        {
+          "id": "chromhmm-ENCFF528RWW",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF528RWW.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF528RWW"
+        },
         {
           "id": "rnaseq-ENCFF247LBN",
           "assay": "rnaseq",
@@ -3345,6 +3350,13 @@
           "experimentAccession": "ENCSR088UYE",
           "fileAccession": "ENCFF953TPB"
         },
+        {
+          "id": "chromhmm-ENCFF685VFV",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF685VFV.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF685VFV"
+        },
         {
           "id": "rnaseq-ENCFF928OMS",
           "assay": "rnaseq",
@@ -3389,6 +3401,13 @@
           "experimentAccession": "ENCSR176BYZ",
           "fileAccession": "ENCFF254PQN"
         },
+        {
+          "id": "chromhmm-ENCFF531OOA",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF531OOA.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF531OOA"
+        },
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           "id": "rnaseq-ENCFF046OKC",
           "assay": "rnaseq",
@@ -3440,6 +3459,13 @@
           "experimentAccession": "ENCSR798FDL",
           "fileAccession": "ENCFF539DCX"
         },
+        {
+          "id": "chromhmm-ENCFF656XVG",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF656XVG.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF656XVG"
+        },
         {
           "id": "rnaseq-ENCFF669KGM",
           "assay": "rnaseq",
@@ -3484,6 +3510,13 @@
           "experimentAccession": "ENCSR662KNY",
           "fileAccession": "ENCFF311LZK"
         },
+        {
+          "id": "chromhmm-ENCFF914NTN",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF914NTN.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF914NTN"
+        },
         {
           "id": "rnaseq-ENCFF233FWM",
           "assay": "rnaseq",
@@ -3528,6 +3561,13 @@
           "experimentAccession": "ENCSR623GSD",
           "fileAccession": "ENCFF905LYI"
         },
+        {
+          "id": "chromhmm-ENCFF477BPV",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF477BPV.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF477BPV"
+        },
         {
           "id": "rnaseq-ENCFF162SRI",
           "assay": "rnaseq",
@@ -3586,6 +3626,13 @@
           "experimentAccession": "ENCSR312LQX",
           "fileAccession": "ENCFF018PKE"
         },
+        {
+          "id": "chromhmm-ENCFF540DJW",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF540DJW.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF540DJW"
+        },
         {
           "id": "rnaseq-ENCFF058MDV",
           "assay": "rnaseq",
@@ -3681,6 +3728,13 @@
           "experimentAccession": "ENCSR382RUC",
           "fileAccession": "ENCFF721EEB"
         },
+        {
+          "id": "chromhmm-ENCFF430NOL",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF430NOL.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF430NOL"
+        },
         {
           "id": "rnaseq-ENCFF908YFY",
           "assay": "rnaseq",
@@ -3725,6 +3779,13 @@
           "experimentAccession": "ENCSR154BXN",
           "fileAccession": "ENCFF026NGX"
         },
+        {
+          "id": "chromhmm-ENCFF282FQP",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF282FQP.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF282FQP"
+        },
         {
           "id": "rnaseq-ENCFF496CSL",
           "assay": "rnaseq",
@@ -3769,6 +3830,13 @@
           "experimentAccession": "ENCSR819QOJ",
           "fileAccession": "ENCFF783ENY"
         },
+        {
+          "id": "chromhmm-ENCFF351TMU",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF351TMU.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF351TMU"
+        },
         {
           "id": "rnaseq-ENCFF877OIK",
           "assay": "rnaseq",
@@ -3820,6 +3888,13 @@
           "experimentAccession": "ENCSR384JBF",
           "fileAccession": "ENCFF667GBX"
         },
+        {
+          "id": "chromhmm-ENCFF917TKD",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF917TKD.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF917TKD"
+        },
         {
           "id": "rnaseq-ENCFF409AEZ",
           "assay": "rnaseq",
@@ -3864,6 +3939,13 @@
           "experimentAccession": "ENCSR468GUI",
           "fileAccession": "ENCFF038YWD"
         },
+        {
+          "id": "chromhmm-ENCFF341SSS",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF341SSS.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF341SSS"
+        },
         {
           "id": "rnaseq-ENCFF205DZY",
           "assay": "rnaseq",
@@ -3908,6 +3990,13 @@
           "experimentAccession": "ENCSR096JCC",
           "fileAccession": "ENCFF775ZBP"
         },
+        {
+          "id": "chromhmm-ENCFF125ZWX",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF125ZWX.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF125ZWX"
+        },
         {
           "id": "rnaseq-ENCFF547IWW",
           "assay": "rnaseq",
@@ -3966,6 +4055,13 @@
           "experimentAccession": "ENCSR211OCS",
           "fileAccession": "ENCFF061DGJ"
         },
+        {
+          "id": "chromhmm-ENCFF911MZE",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF911MZE.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF911MZE"
+        },
         {
           "id": "rnaseq-ENCFF050VFD",
           "assay": "rnaseq",
@@ -4704,6 +4800,13 @@
           "experimentAccession": "ENCSR150RMQ",
           "fileAccession": "ENCFF842JPB"
         },
+        {
+          "id": "chromhmm-ENCFF993CLW",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF993CLW.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF993CLW"
+        },
         {
           "id": "rnaseq-ENCFF239LVM",
           "assay": "rnaseq",
@@ -4748,6 +4851,13 @@
           "experimentAccession": "ENCSR031HDN",
           "fileAccession": "ENCFF955CHM"
         },
+        {
+          "id": "chromhmm-ENCFF627LXK",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF627LXK.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF627LXK"
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         {
           "id": "rnaseq-ENCFF751FBV",
           "assay": "rnaseq",
@@ -4792,6 +4902,13 @@
           "experimentAccession": "ENCSR358MOW",
           "fileAccession": "ENCFF193BCE"
         },
+        {
+          "id": "chromhmm-ENCFF167WOB",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF167WOB.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF167WOB"
+        },
         {
           "id": "rnaseq-ENCFF222WST",
           "assay": "rnaseq",
@@ -4843,6 +4960,13 @@
           "experimentAccession": "ENCSR876SYO",
           "fileAccession": "ENCFF842ISQ"
         },
+        {
+          "id": "chromhmm-ENCFF579GAU",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF579GAU.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF579GAU"
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         {
           "id": "rnaseq-ENCFF561NBF",
           "assay": "rnaseq",
@@ -4887,6 +5011,13 @@
           "experimentAccession": "ENCSR261ICG",
           "fileAccession": "ENCFF059HOV"
         },
+        {
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF626LMB.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF626LMB"
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           "id": "rnaseq-ENCFF390KUZ",
           "assay": "rnaseq",
@@ -5131,6 +5262,13 @@
           "experimentAccession": "ENCSR282YTE",
           "fileAccession": "ENCFF936VGM"
         },
+        {
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF865LIT.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF865LIT"
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         {
           "id": "rnaseq-ENCFF197NSK",
           "assay": "rnaseq",
@@ -5175,6 +5313,13 @@
           "experimentAccession": "ENCSR690VOH",
           "fileAccession": "ENCFF762WBC"
         },
+        {
+          "id": "chromhmm-ENCFF715PSZ",
+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF715PSZ.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF715PSZ"
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         {
           "id": "rnaseq-ENCFF319VES",
           "assay": "rnaseq",
@@ -5219,6 +5364,13 @@
           "experimentAccession": "ENCSR217NOA",
           "fileAccession": "ENCFF869JSQ"
         },
+        {
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF673BTO.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF673BTO"
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           "id": "rnaseq-ENCFF825BVO",
           "assay": "rnaseq",
@@ -5263,6 +5415,13 @@
           "experimentAccession": "ENCSR700QBR",
           "fileAccession": "ENCFF745AWN"
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+        {
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF297TXW.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF297TXW"
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           "assay": "ccre",
@@ -5300,6 +5459,13 @@
           "experimentAccession": "ENCSR983JWA",
           "fileAccession": "ENCFF931NRR"
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF624UWR.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF624UWR"
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           "assay": "rnaseq",
@@ -5876,6 +6042,13 @@
           "experimentAccession": "ENCSR820ACB",
           "fileAccession": "ENCFF470YRM"
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF823IOJ.bigBed",
+          "experimentAccession": "",
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           "assay": "rnaseq",
@@ -5920,6 +6093,13 @@
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           "fileAccession": "ENCFF817SNN"
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF025BZM.bigBed",
+          "experimentAccession": "",
+          "fileAccession": "ENCFF025BZM"
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           "assay": "rnaseq",
@@ -5964,6 +6144,13 @@
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           "fileAccession": "ENCFF578WSN"
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF359RXA.bigBed",
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           "assay": "rnaseq",
@@ -6008,6 +6195,13 @@
           "experimentAccession": "ENCSR068YGC",
           "fileAccession": "ENCFF930NIN"
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF707UVS.bigBed",
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@@ -6082,6 +6276,13 @@
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+          "assay": "chromhmm",
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           "assay": "rnaseq",
@@ -6126,6 +6327,13 @@
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+          "assay": "chromhmm",
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           "assay": "rnaseq",
@@ -6228,6 +6436,13 @@
           "experimentAccession": "ENCSR451NAE",
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+          "assay": "chromhmm",
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           "assay": "rnaseq",
@@ -6279,6 +6494,13 @@
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+          "assay": "chromhmm",
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           "assay": "rnaseq",
@@ -6323,6 +6545,13 @@
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+          "assay": "chromhmm",
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@@ -6367,6 +6596,13 @@
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           "fileAccession": "ENCFF084TXQ"
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@@ -6881,6 +7131,13 @@
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+          "assay": "chromhmm",
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@@ -6983,6 +7240,13 @@
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+          "assay": "chromhmm",
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@@ -7101,6 +7365,13 @@
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+          "assay": "chromhmm",
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@@ -7145,6 +7416,13 @@
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           "fileAccession": "ENCFF715HOE"
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+          "assay": "chromhmm",
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           "fileAccession": "ENCFF926MJG"
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+          "assay": "chromhmm",
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@@ -7240,6 +7525,13 @@
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           "fileAccession": "ENCFF691WWH"
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@@ -7284,6 +7576,13 @@
           "experimentAccession": "ENCSR204ZTY",
           "fileAccession": "ENCFF069VZC"
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@@ -7519,6 +7818,13 @@
           "experimentAccession": "ENCSR785NEL",
           "fileAccession": "ENCFF535WOY"
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF617UGY.bigBed",
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           "assay": "rnaseq",
@@ -7563,6 +7869,13 @@
           "experimentAccession": "ENCSR302LIV",
           "fileAccession": "ENCFF199LFB"
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF919UMR.bigBed",
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@@ -7607,6 +7920,13 @@
           "experimentAccession": "ENCSR343TXK",
           "fileAccession": "ENCFF388YMS"
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF216VJO.bigBed",
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           "assay": "rnaseq",
@@ -7665,6 +7985,13 @@
           "experimentAccession": "ENCSR032HKE",
           "fileAccession": "ENCFF450YYQ"
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+          "assay": "chromhmm",
+          "url": "https://downloads.wenglab.org/Registry-V4/ENCFF477PYZ.bigBed",
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+          "assay": "chromhmm",
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@@ -7783,6 +8117,13 @@
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+          "assay": "chromhmm",
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+          "assay": "chromhmm",
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