@weng-lab/genomebrowser-ui 0.2.11 → 0.3.0

package/dist/TrackSelect/Folders/biosamples/shared/types.d.ts

@@ -3,14 +3,18 @@
  */
 export type CollectionType = "Core" | "Ancillary" | "Partial";
 /**
- * Assay information from the JSON data
+ * Assay information from the JSON data.
+ * Standard assays have a single `url`, while WGBS assays have `cpgPlus`, `cpgMinus`, `coverage`.
  */
 export type BiosampleAssayInfo = {
     id: string;
     assay: string;
-    url: string;
+    url?: string;
     experimentAccession: string;
-    fileAccession: string;
+    fileAccession?: string;
+    cpgPlus?: string;
+    cpgMinus?: string;
+    coverage?: string;
 };
 /**
  * Track information from the JSON data
@@ -25,7 +29,8 @@ export type BiosampleTrackInfo = {
     collection: CollectionType;
 };
 /**
- * Row format for DataGrid (flattened from TrackInfo)
+ * Row format for DataGrid (flattened from TrackInfo).
+ * Standard assays have a single `url`, while WGBS assays have `cpgPlus`, `cpgMinus`, `coverage`.
  */
 export type BiosampleRowInfo = {
     id: string;
@@ -35,9 +40,12 @@ export type BiosampleRowInfo = {
     displayName: string;
     assay: string;
     experimentAccession: string;
-    fileAccession: string;
-    url: string;
+    fileAccession?: string;
+    url?: string;
     collection: CollectionType;
+    cpgPlus?: string;
+    cpgMinus?: string;
+    coverage?: string;
 };
 /**
  * Structure of the biosample JSON data files

package/dist/TrackSelect/Folders/index.d.ts

@@ -2,6 +2,7 @@ import { Assembly, FolderDefinition } from './types';
 export { type Assembly, type FolderDefinition, type FolderRuntimeConfig, } from './types';
 export type { BiosampleRowInfo } from './biosamples/shared/types';
 export type { GeneRowInfo } from './genes/shared/types';
+export type { OtherTrackInfo } from './other-tracks/shared/types';
 /**
  * Registry of folders available for each assembly.
  *

package/dist/TrackSelect/Folders/other-tracks/data/human.json.d.ts

@@ -0,0 +1,10 @@
+declare const _default: [
+  {
+    "id": "tf-peaks",
+    "name": "TF ChIP-seq Peaks",
+    "description": "Shows TF Motifs in green, overlayed on ChIP-seq peaks in gray"
+  }
+]
+;
+
+export default _default;

package/dist/TrackSelect/Folders/other-tracks/human.d.ts

@@ -0,0 +1 @@
+export declare const humanOtherTracksFolder: import('..').FolderDefinition<import('..').OtherTrackInfo>;

package/dist/TrackSelect/Folders/other-tracks/shared/columns.d.ts

@@ -0,0 +1,5 @@
+import { GridColDef } from '@mui/x-data-grid-premium';
+import { OtherTrackInfo } from './types';
+export declare const defaultColumns: GridColDef<OtherTrackInfo>[];
+export declare const defaultGroupingModel: string[];
+export declare const defaultLeafField = "id";

package/dist/TrackSelect/Folders/other-tracks/shared/createFolder.d.ts

@@ -0,0 +1,9 @@
+import { FolderDefinition } from '../../types';
+import { OtherTrackDataFile, OtherTrackInfo } from './types';
+export interface CreateOtherTracksFolderOptions {
+    id: string;
+    label: string;
+    description?: string;
+    data: OtherTrackDataFile;
+}
+export declare function createOtherTracksFolder(options: CreateOtherTracksFolderOptions): FolderDefinition<OtherTrackInfo>;

package/dist/TrackSelect/Folders/other-tracks/shared/treeBuilder.d.ts

@@ -0,0 +1,4 @@
+import { TreeViewBaseItem } from '@mui/x-tree-view';
+import { ExtendedTreeItemProps } from '../../../types';
+import { OtherTrackInfo } from './types';
+export declare function buildTreeView(selectedIds: string[], rowById: Map<string, OtherTrackInfo>, rootLabel?: string): TreeViewBaseItem<ExtendedTreeItemProps>[];

package/dist/TrackSelect/Folders/other-tracks/shared/types.d.ts

@@ -0,0 +1,6 @@
+export type OtherTrackInfo = {
+    id: string;
+    name: string;
+    description: string;
+};
+export type OtherTrackDataFile = OtherTrackInfo[];