@weng-lab/genomebrowser-ui 0.1.9 → 0.1.11

package/dist/TrackSelect/DataGrid/GroupingCell.d.ts

@@ -0,0 +1,2 @@
+import { GridRenderCellParams } from '@mui/x-data-grid-premium';
+export default function GroupingCell(params: GridRenderCellParams): import("react/jsx-runtime").JSX.Element;

package/dist/TrackSelect/DataGrid/dataGridHelpers.d.ts

@@ -1,11 +1,28 @@
 import { FuseResult } from 'fuse.js';
 import { RowInfo, SearchTracksProps, TrackInfo } from '../types';
-export declare function getTracksByAssayAndOntology(assay: string, ontology: string): TrackInfo[];
-/** Flatten TrackInfo or FuseResult into RowInfo for DataGrid display.
- * @param track TrackInfo object or FuseResult containing information from JSON file
- * @returns Flattened RowInfo object
+import { Assembly } from '../consts';
+export declare function getTracksData(assembly: Assembly): {
+    tracks: {
+        name: string;
+        ontology: string;
+        lifeStage: string;
+        sampleType: string;
+        displayname: string;
+        assays: {
+            id: string;
+            assay: string;
+            url: string;
+            experimentAccession: string;
+            fileAccession: string;
+        }[];
+    }[];
+};
+export declare function getTracksByAssayAndOntology(assay: string, ontology: string, tracksData: ReturnType<typeof getTracksData>): TrackInfo[];
+/** Flatten TrackInfo into RowInfo objects for DataGrid display.
+ * @param track TrackInfo object containing information from JSON file
+ * @returns Array of flattened RowInfo objects, one per assay
  */
-export declare function flattenIntoRow(track: TrackInfo): RowInfo;
+export declare function flattenIntoRows(track: TrackInfo): RowInfo[];
 /**
  * Fuzzy search in tracks stored in a JSON file.
  *
@@ -27,4 +44,6 @@ export declare function flattenIntoRow(track: TrackInfo): RowInfo;
  * @param limit - (Optional) Maximum number of results to return (default is 10).
  * @returns FuseResult object containing the search results.
  */
-export declare function searchTracks({ jsonStructure, query, keyWeightMap, threshold, }: SearchTracksProps): FuseResult<TrackInfo>[];
+export declare function searchTracks({ jsonStructure, query, keyWeightMap, threshold, tracksData, }: SearchTracksProps & {
+    tracksData: ReturnType<typeof getTracksData>;
+}): FuseResult<TrackInfo>[];

package/dist/TrackSelect/TrackSelect.d.ts

@@ -1,5 +1,8 @@
 import { SelectionStoreInstance } from './store';
 export interface TrackSelectProps {
     store: SelectionStoreInstance;
+    onSubmit?: (trackIds: Set<string>) => void;
+    onCancel?: () => void;
+    onReset?: () => void;
 }
-export default function TrackSelect({ store }: TrackSelectProps): import("react/jsx-runtime").JSX.Element;
+export default function TrackSelect({ store, onSubmit, onCancel, onReset, }: TrackSelectProps): import("react/jsx-runtime").JSX.Element;

package/dist/TrackSelect/TreeView/treeViewHelpers.d.ts

@@ -39,7 +39,7 @@ export declare function buildTreeView(selectedIds: string[], root: TreeViewBaseI
  * @param limit - (Optional) Maximum number of results to return (default is 10).
  * @returns FuseResult object containing the search results.
  */
-export declare function searchTreeItems({ treeItems, query, keyWeightMap, threshold, limit }: SearchTracksProps): FuseResult<RowInfo>[];
+export declare function searchTreeItems({ treeItems, query, keyWeightMap, threshold, limit, }: SearchTracksProps): FuseResult<RowInfo>[];
 /**
  * Creates the assay icon for DataGrid and RichTreeView
  * @param type: assay type

package/dist/TrackSelect/consts.d.ts

@@ -1,22 +1,11 @@
 import { RowInfo } from './types';
+export type Assembly = "GRCh38" | "mm10";
 export declare const assayTypes: string[];
 export declare const ontologyTypes: string[];
-export declare const rows: {
-    assay: string;
-    ontology: string;
-    lifeStage: string;
-    sampleType: string;
-    displayname: string;
-    experimentAccession: string;
-    fileAccession: string;
-    url: string;
-}[];
-export declare const rowById: Map<string, RowInfo>;
 /**
- * Check if an ID is a real track (exists in rowById) vs an auto-generated group ID
+ * Build rows and rowById for a specific assembly
  */
-export declare const isTrackId: (id: string) => boolean;
-/**
- * Filter a set of IDs to return only real track IDs (no auto-generated group IDs)
- */
-export declare const getActiveTracks: (selectedIds: Set<string>) => Set<string>;
+export declare function buildRowsForAssembly(assembly: Assembly): {
+    rows: RowInfo[];
+    rowById: Map<string, RowInfo>;
+};

package/dist/TrackSelect/store.d.ts

@@ -1,4 +1,5 @@
 import { StoreApi, UseBoundStore } from 'zustand';
+import { Assembly } from './consts';
 import { SelectionAction, SelectionState } from './types';
 export type SelectionStoreInstance = UseBoundStore<StoreApi<SelectionState & SelectionAction>>;
-export declare function createSelectionStore(initialIds?: Set<string>): UseBoundStore<StoreApi<SelectionState & SelectionAction>>;
+export declare function createSelectionStore(assembly: Assembly, initialIds?: Set<string>): UseBoundStore<StoreApi<SelectionState & SelectionAction>>;

package/dist/TrackSelect/types.d.ts

@@ -17,6 +17,7 @@ export interface SearchTracksProps {
  * Types for the JSON-formatted tracks fomr modifiedHumanTracks.json
  */
 export type AssayInfo = {
+    id: string;
     assay: string;
     url: string;
     experimentAccession: string;
@@ -34,6 +35,7 @@ export type TrackInfo = {
  *  Row format for DataGrid
  */
 export type RowInfo = {
+    id: string;
     ontology: string;
     lifeStage: string;
     sampleType: string;
@@ -83,6 +85,9 @@ export interface CustomTreeItemProps extends Omit<UseTreeItemParameters, "rootRe
  */
 export type SelectionState = {
     maxTracks: number;
+    assembly: string;
+    rows: RowInfo[];
+    rowById: Map<string, RowInfo>;
     selectedIds: Set<string>;
 };
 export type SelectionAction = {