@weavelogic/knowledge-graph-agent 0.9.0 → 0.10.1

package/dist/generators/docs-analyzer.js.map

@@ -1 +1 @@
-{"version":3,"file":"docs-analyzer.js","sources":["../../src/generators/docs-analyzer.ts"],"sourcesContent":["/**\n * Docs Analyzer\n *\n * Advanced documentation analyzer that uses claude-flow to create\n * comprehensive knowledge graph documentation with proper structure,\n * wikilinks, frontmatter, and tags following Obsidian conventions.\n */\n\nimport { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';\nimport { join, basename, dirname, relative, extname } from 'path';\nimport { execSync, spawn } from 'child_process';\nimport fg from 'fast-glob';\nimport matter from 'gray-matter';\nimport type { NodeType, NodeStatus, NodeFrontmatter } from '../core/types.js';\n\n/**\n * Analyzer options\n */\nexport interface AnalyzerOptions {\n  /** Source directory with existing docs */\n  sourceDir: string;\n  /** Target directory (default: docs-nn) */\n  targetDir?: string;\n  /** Project root for path resolution */\n  projectRoot: string;\n  /** Use claude-flow for deep analysis */\n  useClaudeFlow?: boolean;\n  /** Create MOC (Map of Content) files */\n  createMOC?: boolean;\n  /** Link back to original docs */\n  linkOriginal?: boolean;\n  /** Maximum depth for analysis */\n  maxDepth?: number;\n  /** Dry run - show what would be done */\n  dryRun?: boolean;\n  /** Verbose output */\n  verbose?: boolean;\n}\n\n/**\n * Analyzed document\n */\nexport interface AnalyzedDoc {\n  /** Original file path */\n  originalPath: string;\n  /** New file path in docs-nn */\n  newPath: string;\n  /** Document title */\n  title: string;\n  /** Detected node type */\n  type: NodeType;\n  /** Extracted tags */\n  tags: string[];\n  /** Related documents (wikilinks) */\n  related: string[];\n  /** Key concepts extracted */\n  concepts: string[];\n  /** Areas needing research */\n  researchNeeded: string[];\n  /** TODOs found or generated */\n  todos: string[];\n  /** Summary/description */\n  summary: string;\n  /** Category path in structure */\n  category: string;\n}\n\n/**\n * Analyzer result\n */\nexport interface AnalyzerResult {\n  success: boolean;\n  filesAnalyzed: number;\n  filesCreated: number;\n  mocFilesCreated: number;\n  errors: string[];\n  analyzed: AnalyzedDoc[];\n  structure: Map<string, string[]>;\n}\n\n/**\n * Weave-NN category structure with descriptions\n */\nconst CATEGORY_STRUCTURE: Record<string, { type: NodeType; description: string; subcategories: string[] }> = {\n  concepts: {\n    type: 'concept',\n    description: 'Abstract concepts, theories, and architectural principles',\n    subcategories: ['architecture', 'patterns', 'principles', 'models'],\n  },\n  components: {\n    type: 'technical',\n    description: 'Reusable technical components and implementations',\n    subcategories: ['ui', 'utilities', 'core', 'shared'],\n  },\n  services: {\n    type: 'service',\n    description: 'Backend services, APIs, and workers',\n    subcategories: ['api', 'workers', 'handlers', 'middleware'],\n  },\n  features: {\n    type: 'feature',\n    description: 'Product features and capabilities',\n    subcategories: ['core', 'advanced', 'experimental'],\n  },\n  integrations: {\n    type: 'integration',\n    description: 'External integrations and adapters',\n    subcategories: ['databases', 'auth', 'storage', 'monitoring', 'third-party'],\n  },\n  standards: {\n    type: 'standard',\n    description: 'Coding standards, conventions, and best practices',\n    subcategories: ['coding', 'documentation', 'testing', 'security'],\n  },\n  guides: {\n    type: 'guide',\n    description: 'How-to guides and tutorials',\n    subcategories: ['getting-started', 'tutorials', 'troubleshooting', 'deployment'],\n  },\n  references: {\n    type: 'technical',\n    description: 'API references and technical documentation',\n    subcategories: ['api', 'cli', 'config', 'schemas'],\n  },\n};\n\n/**\n * Analyze and migrate documentation to weave-nn structure\n */\nexport async function analyzeDocs(options: AnalyzerOptions): Promise<AnalyzerResult> {\n  const {\n    sourceDir,\n    targetDir = 'docs-nn',\n    projectRoot,\n    useClaudeFlow = false,\n    createMOC = true,\n    linkOriginal = true,\n    maxDepth = 3,\n    dryRun = false,\n    verbose = false,\n  } = options;\n\n  const result: AnalyzerResult = {\n    success: true,\n    filesAnalyzed: 0,\n    filesCreated: 0,\n    mocFilesCreated: 0,\n    errors: [],\n    analyzed: [],\n    structure: new Map(),\n  };\n\n  const sourcePath = join(projectRoot, sourceDir);\n  const targetPath = join(projectRoot, targetDir);\n\n  // Validate source exists\n  if (!existsSync(sourcePath)) {\n    result.success = false;\n    result.errors.push(`Source directory not found: ${sourcePath}`);\n    return result;\n  }\n\n  // Create target structure\n  if (!dryRun) {\n    createFullStructure(targetPath);\n  }\n\n  // Find all markdown files\n  const files = await fg('**/*.md', {\n    cwd: sourcePath,\n    ignore: ['node_modules/**', '.git/**', '_templates/**', 'docs-nn/**'],\n  });\n\n  // First pass: Analyze all documents\n  const analyzedDocs: AnalyzedDoc[] = [];\n\n  for (const file of files) {\n    result.filesAnalyzed++;\n    const sourceFile = join(sourcePath, file);\n\n    try {\n      const analyzed = await analyzeDocument(sourceFile, file, sourcePath, {\n        useClaudeFlow,\n        linkOriginal,\n        verbose,\n      });\n      analyzedDocs.push(analyzed);\n\n      // Track structure\n      const category = analyzed.category.split('/')[0];\n      if (!result.structure.has(category)) {\n        result.structure.set(category, []);\n      }\n      result.structure.get(category)!.push(analyzed.title);\n\n    } catch (error) {\n      result.errors.push(`Failed to analyze ${file}: ${error}`);\n    }\n  }\n\n  // Build cross-references between documents\n  buildCrossReferences(analyzedDocs);\n\n  // Second pass: Create new documents\n  for (const doc of analyzedDocs) {\n    try {\n      const targetFile = join(targetPath, doc.newPath);\n\n      if (!dryRun) {\n        mkdirSync(dirname(targetFile), { recursive: true });\n        const content = generateKnowledgeDoc(doc, sourceDir, linkOriginal, analyzedDocs);\n        writeFileSync(targetFile, content, 'utf-8');\n      }\n\n      result.filesCreated++;\n      result.analyzed.push(doc);\n\n    } catch (error) {\n      result.errors.push(`Failed to create ${doc.newPath}: ${error}`);\n    }\n  }\n\n  // Create MOC files for each category\n  if (createMOC && !dryRun) {\n    for (const [category, docs] of result.structure) {\n      const mocPath = join(targetPath, category, '_MOC.md');\n      const mocContent = generateMOC(category, docs, analyzedDocs);\n      writeFileSync(mocPath, mocContent, 'utf-8');\n      result.mocFilesCreated++;\n    }\n\n    // Create master MOC\n    const masterMocPath = join(targetPath, 'MOC.md');\n    const masterMocContent = generateMasterMOC(result.structure, analyzedDocs);\n    writeFileSync(masterMocPath, masterMocContent, 'utf-8');\n    result.mocFilesCreated++;\n\n    // Create PRIMITIVES.md\n    const primitivesPath = join(targetPath, 'PRIMITIVES.md');\n    const primitivesContent = generatePrimitives(analyzedDocs);\n    writeFileSync(primitivesPath, primitivesContent, 'utf-8');\n  }\n\n  result.success = result.errors.length === 0;\n  return result;\n}\n\n/**\n * Analyze a single document\n */\nasync function analyzeDocument(\n  filePath: string,\n  relativePath: string,\n  sourcePath: string,\n  options: { useClaudeFlow?: boolean; linkOriginal?: boolean; verbose?: boolean }\n): Promise<AnalyzedDoc> {\n  const content = readFileSync(filePath, 'utf-8');\n  const { data: existingFrontmatter, content: body } = matter(content);\n\n  const filename = basename(filePath, '.md');\n  const title = existingFrontmatter.title as string || formatTitle(filename);\n\n  // Detect node type and category\n  const { type, category } = detectTypeAndCategory(relativePath, body, existingFrontmatter);\n\n  // Extract tags\n  const tags = extractAllTags(body, existingFrontmatter, relativePath);\n\n  // Extract wikilinks and markdown links\n  const related = extractLinks(body);\n\n  // Extract key concepts\n  const concepts = extractConcepts(body);\n\n  // Find areas needing research\n  const researchNeeded = findResearchAreas(body, filename);\n\n  // Extract existing TODOs and generate new ones\n  const todos = extractAndGenerateTodos(body, content, filename);\n\n  // Generate summary\n  const summary = generateSummary(body, existingFrontmatter);\n\n  // Determine new path\n  const newPath = join(category, formatFilename(filename) + '.md');\n\n  return {\n    originalPath: relativePath,\n    newPath,\n    title,\n    type,\n    tags,\n    related,\n    concepts,\n    researchNeeded,\n    todos,\n    summary,\n    category,\n  };\n}\n\n/**\n * Create full target directory structure\n */\nfunction createFullStructure(targetPath: string): void {\n  // Create all category directories and subcategories\n  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {\n    mkdirSync(join(targetPath, category), { recursive: true });\n    for (const sub of config.subcategories) {\n      mkdirSync(join(targetPath, category, sub), { recursive: true });\n    }\n  }\n\n  // Create meta directories\n  mkdirSync(join(targetPath, '_templates'), { recursive: true });\n  mkdirSync(join(targetPath, '_attachments'), { recursive: true });\n  mkdirSync(join(targetPath, '_archive'), { recursive: true });\n}\n\n/**\n * Detect node type and category from content\n */\nfunction detectTypeAndCategory(\n  filePath: string,\n  content: string,\n  frontmatter: Record<string, unknown>\n): { type: NodeType; category: string } {\n  // Check frontmatter first\n  if (frontmatter.type && frontmatter.category) {\n    return {\n      type: frontmatter.type as NodeType,\n      category: frontmatter.category as string,\n    };\n  }\n\n  const lowerContent = content.toLowerCase();\n  const lowerPath = filePath.toLowerCase();\n\n  // Score each category\n  const scores: Record<string, number> = {};\n\n  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {\n    scores[category] = 0;\n\n    // Path matching\n    if (lowerPath.includes(category)) scores[category] += 10;\n    for (const sub of config.subcategories) {\n      if (lowerPath.includes(sub)) scores[category] += 5;\n    }\n\n    // Content analysis based on type\n    const keywords = getKeywordsForType(config.type);\n    for (const keyword of keywords) {\n      const regex = new RegExp(`\\\\b${keyword}\\\\b`, 'gi');\n      const matches = content.match(regex);\n      if (matches) scores[category] += matches.length;\n    }\n  }\n\n  // Find best match\n  let bestCategory = 'concepts';\n  let bestScore = 0;\n\n  for (const [category, score] of Object.entries(scores)) {\n    if (score > bestScore) {\n      bestScore = score;\n      bestCategory = category;\n    }\n  }\n\n  return {\n    type: CATEGORY_STRUCTURE[bestCategory].type,\n    category: bestCategory,\n  };\n}\n\n/**\n * Get keywords for a node type\n */\nfunction getKeywordsForType(type: NodeType): string[] {\n  const keywords: Record<NodeType, string[]> = {\n    concept: ['concept', 'theory', 'principle', 'overview', 'introduction', 'architecture', 'design', 'pattern'],\n    technical: ['component', 'implementation', 'class', 'function', 'module', 'utility', 'helper'],\n    feature: ['feature', 'capability', 'functionality', 'user', 'requirement', 'use case'],\n    primitive: ['library', 'framework', 'dependency', 'tool', 'sdk'],\n    service: ['api', 'endpoint', 'service', 'server', 'backend', 'worker', 'handler'],\n    guide: ['how to', 'tutorial', 'guide', 'step', 'walkthrough', 'getting started'],\n    standard: ['standard', 'convention', 'best practice', 'rule', 'guideline', 'style'],\n    integration: ['integration', 'connect', 'plugin', 'adapter', 'sync', 'import', 'export'],\n  };\n\n  return keywords[type] || [];\n}\n\n/**\n * Extract all tags from content and path\n */\nfunction extractAllTags(\n  content: string,\n  frontmatter: Record<string, unknown>,\n  filePath: string\n): string[] {\n  const tags = new Set<string>();\n\n  // Add existing frontmatter tags\n  if (Array.isArray(frontmatter.tags)) {\n    frontmatter.tags.forEach(t => tags.add(String(t)));\n  }\n\n  // Extract #tags from content\n  const hashTags = content.match(/#[\\w-]+/g);\n  if (hashTags) {\n    hashTags.forEach(t => tags.add(t.slice(1)));\n  }\n\n  // Generate tags from path\n  const pathParts = filePath.split('/').filter(p => p && !p.endsWith('.md'));\n  pathParts.forEach(p => {\n    if (p.length > 2 && p.length < 20) {\n      tags.add(p.replace(/[-_]/g, '-').toLowerCase());\n    }\n  });\n\n  // Add status tags\n  if (content.match(/\\b(wip|draft|todo)\\b/i)) tags.add('needs-work');\n  if (content.match(/\\b(deprecated|legacy)\\b/i)) tags.add('deprecated');\n  if (content.match(/\\b(experimental|beta)\\b/i)) tags.add('experimental');\n\n  return [...tags].slice(0, 15);\n}\n\n/**\n * Extract wikilinks and markdown links\n */\nfunction extractLinks(content: string): string[] {\n  const links = new Set<string>();\n\n  // Wikilinks\n  const wikilinks = content.match(/\\[\\[([^\\]|]+)(?:\\|[^\\]]+)?\\]\\]/g);\n  if (wikilinks) {\n    wikilinks.forEach(link => {\n      const match = link.match(/\\[\\[([^\\]|]+)/);\n      if (match) links.add(match[1].trim());\n    });\n  }\n\n  // Markdown links (internal only)\n  const mdLinks = content.match(/\\[([^\\]]+)\\]\\(([^)]+)\\)/g);\n  if (mdLinks) {\n    mdLinks.forEach(link => {\n      const match = link.match(/\\]\\(([^)]+)\\)/);\n      if (match && !match[1].startsWith('http')) {\n        links.add(match[1].replace(/\\.md$/, '').trim());\n      }\n    });\n  }\n\n  return [...links];\n}\n\n/**\n * Extract key concepts from content\n */\nfunction extractConcepts(content: string): string[] {\n  const concepts: string[] = [];\n\n  // Look for headers as concepts\n  const headers = content.match(/^##\\s+(.+)$/gm);\n  if (headers) {\n    headers.slice(0, 5).forEach(h => {\n      concepts.push(h.replace(/^##\\s+/, '').trim());\n    });\n  }\n\n  // Look for bold terms as concepts\n  const boldTerms = content.match(/\\*\\*([^*]+)\\*\\*/g);\n  if (boldTerms) {\n    boldTerms.slice(0, 5).forEach(term => {\n      const clean = term.replace(/\\*\\*/g, '').trim();\n      if (clean.length > 2 && clean.length < 50) {\n        concepts.push(clean);\n      }\n    });\n  }\n\n  return [...new Set(concepts)].slice(0, 10);\n}\n\n/**\n * Find areas needing research\n */\nfunction findResearchAreas(content: string, filename: string): string[] {\n  const areas: string[] = [];\n\n  // Look for question marks indicating uncertainty\n  const questions = content.match(/[^.!?]*\\?/g);\n  if (questions) {\n    questions.slice(0, 3).forEach(q => {\n      if (q.length > 10 && q.length < 200) {\n        areas.push(q.trim());\n      }\n    });\n  }\n\n  // Look for placeholders\n  if (content.match(/\\bTBD\\b|\\bTODO\\b|\\bFIXME\\b/i)) {\n    areas.push('Contains placeholders that need completion');\n  }\n\n  // Look for empty sections\n  const emptyHeaders = content.match(/^##[^#\\n]+\\n\\n##/gm);\n  if (emptyHeaders) {\n    areas.push('Has empty sections that need content');\n  }\n\n  // Check for missing content indicators\n  if (content.length < 500) {\n    areas.push('Document is short - may need expansion');\n  }\n\n  return areas;\n}\n\n/**\n * Extract and generate TODOs\n */\nfunction extractAndGenerateTodos(body: string, fullContent: string, filename: string): string[] {\n  const todos: string[] = [];\n\n  // Extract existing TODOs\n  const existingTodos = fullContent.match(/[-*]\\s*\\[[ x]\\]\\s*(.+)/g);\n  if (existingTodos) {\n    existingTodos.forEach(todo => {\n      todos.push(todo.replace(/^[-*]\\s*\\[[ x]\\]\\s*/, '').trim());\n    });\n  }\n\n  // Extract TODO comments\n  const todoComments = fullContent.match(/(?:TODO|FIXME|XXX):\\s*(.+)/gi);\n  if (todoComments) {\n    todoComments.forEach(todo => {\n      todos.push(todo.replace(/^(?:TODO|FIXME|XXX):\\s*/i, '').trim());\n    });\n  }\n\n  // Generate suggested TODOs based on analysis\n  if (!fullContent.match(/^---[\\s\\S]*?---/)) {\n    todos.push('Add proper frontmatter');\n  }\n\n  if (!fullContent.match(/\\[\\[/)) {\n    todos.push('Add wikilinks to related documents');\n  }\n\n  if (!fullContent.match(/^##\\s/m)) {\n    todos.push('Add section structure with headers');\n  }\n\n  return [...new Set(todos)].slice(0, 10);\n}\n\n/**\n * Generate summary from content\n */\nfunction generateSummary(body: string, frontmatter: Record<string, unknown>): string {\n  // Use existing description\n  if (frontmatter.description) {\n    return String(frontmatter.description);\n  }\n\n  // Extract first meaningful paragraph\n  const lines = body.split('\\n');\n  for (const line of lines) {\n    const trimmed = line.trim();\n    if (trimmed && !trimmed.startsWith('#') && !trimmed.startsWith('```') && trimmed.length > 30) {\n      return trimmed.length > 200 ? trimmed.slice(0, 197) + '...' : trimmed;\n    }\n  }\n\n  return 'Documentation requiring summary.';\n}\n\n/**\n * Build cross-references between documents\n */\nfunction buildCrossReferences(docs: AnalyzedDoc[]): void {\n  const titleMap = new Map<string, AnalyzedDoc>();\n\n  // Build title lookup\n  docs.forEach(doc => {\n    titleMap.set(doc.title.toLowerCase(), doc);\n    titleMap.set(formatFilename(doc.title), doc);\n  });\n\n  // Update related links\n  docs.forEach(doc => {\n    const newRelated: string[] = [];\n\n    doc.related.forEach(link => {\n      const linkedDoc = titleMap.get(link.toLowerCase()) || titleMap.get(formatFilename(link));\n      if (linkedDoc) {\n        newRelated.push(linkedDoc.title);\n      } else {\n        newRelated.push(link);\n      }\n    });\n\n    // Find related docs by shared tags\n    const sharedTagDocs = docs.filter(other =>\n      other !== doc &&\n      other.tags.some(t => doc.tags.includes(t))\n    );\n\n    sharedTagDocs.slice(0, 3).forEach(other => {\n      if (!newRelated.includes(other.title)) {\n        newRelated.push(other.title);\n      }\n    });\n\n    doc.related = [...new Set(newRelated)].slice(0, 10);\n  });\n}\n\n/**\n * Generate knowledge document content\n */\nfunction generateKnowledgeDoc(\n  doc: AnalyzedDoc,\n  sourceDir: string,\n  linkOriginal: boolean,\n  allDocs: AnalyzedDoc[]\n): string {\n  const lines: string[] = [];\n\n  // Frontmatter\n  lines.push('---');\n  lines.push(`title: \"${doc.title}\"`);\n  lines.push(`type: ${doc.type}`);\n  lines.push(`status: active`);\n  if (doc.tags.length > 0) {\n    lines.push('tags:');\n    doc.tags.forEach(tag => lines.push(`  - ${tag}`));\n  }\n  lines.push(`category: ${doc.category}`);\n  lines.push(`description: \"${doc.summary.replace(/\"/g, '\\\\\"')}\"`);\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push(`updated: ${new Date().toISOString().split('T')[0]}`);\n  if (linkOriginal) {\n    lines.push(`original: \"${sourceDir}/${doc.originalPath}\"`);\n  }\n  if (doc.related.length > 0) {\n    lines.push('related:');\n    doc.related.slice(0, 5).forEach(r => lines.push(`  - \"[[${r}]]\"`));\n  }\n  lines.push('---');\n  lines.push('');\n\n  // Title\n  lines.push(`# ${doc.title}`);\n  lines.push('');\n\n  // Summary\n  lines.push('## Overview');\n  lines.push('');\n  lines.push(doc.summary);\n  lines.push('');\n\n  // Original reference\n  if (linkOriginal) {\n    lines.push(`> [!info] Original Documentation`);\n    lines.push(`> See [[${sourceDir}/${doc.originalPath}|original document]] for full details.`);\n    lines.push('');\n  }\n\n  // Key concepts\n  if (doc.concepts.length > 0) {\n    lines.push('## Key Concepts');\n    lines.push('');\n    doc.concepts.forEach(concept => {\n      lines.push(`- **${concept}**`);\n    });\n    lines.push('');\n  }\n\n  // Related documents\n  if (doc.related.length > 0) {\n    lines.push('## Related');\n    lines.push('');\n    doc.related.forEach(rel => {\n      lines.push(`- [[${rel}]]`);\n    });\n    lines.push('');\n  }\n\n  // Research needed\n  if (doc.researchNeeded.length > 0) {\n    lines.push('## Research Needed');\n    lines.push('');\n    lines.push('> [!warning] Areas Requiring Further Research');\n    doc.researchNeeded.forEach(area => {\n      lines.push(`> - ${area}`);\n    });\n    lines.push('');\n  }\n\n  // TODOs\n  if (doc.todos.length > 0) {\n    lines.push('## TODOs');\n    lines.push('');\n    doc.todos.forEach(todo => {\n      lines.push(`- [ ] ${todo}`);\n    });\n    lines.push('');\n  }\n\n  // Tags section\n  lines.push('## Tags');\n  lines.push('');\n  lines.push(doc.tags.map(t => `#${t}`).join(' '));\n  lines.push('');\n\n  return lines.join('\\n');\n}\n\n/**\n * Generate MOC (Map of Content) for a category\n */\nfunction generateMOC(category: string, docTitles: string[], allDocs: AnalyzedDoc[]): string {\n  const config = CATEGORY_STRUCTURE[category];\n  const categoryDocs = allDocs.filter(d => d.category.startsWith(category));\n\n  const lines: string[] = [];\n\n  lines.push('---');\n  lines.push(`title: \"${formatTitle(category)} - Map of Content\"`);\n  lines.push('type: concept');\n  lines.push('status: active');\n  lines.push('tags:');\n  lines.push('  - moc');\n  lines.push(`  - ${category}`);\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push('---');\n  lines.push('');\n  lines.push(`# ${formatTitle(category)}`);\n  lines.push('');\n  lines.push(config?.description || `Documentation related to ${category}.`);\n  lines.push('');\n\n  // Group by subcategory\n  const bySubcategory = new Map<string, AnalyzedDoc[]>();\n  categoryDocs.forEach(doc => {\n    const parts = doc.category.split('/');\n    const sub = parts[1] || 'general';\n    if (!bySubcategory.has(sub)) {\n      bySubcategory.set(sub, []);\n    }\n    bySubcategory.get(sub)!.push(doc);\n  });\n\n  for (const [sub, docs] of bySubcategory) {\n    lines.push(`## ${formatTitle(sub)}`);\n    lines.push('');\n    docs.forEach(doc => {\n      lines.push(`- [[${doc.title}]] - ${doc.summary.slice(0, 60)}...`);\n    });\n    lines.push('');\n  }\n\n  lines.push('---');\n  lines.push(`*${categoryDocs.length} documents in this category*`);\n\n  return lines.join('\\n');\n}\n\n/**\n * Generate master MOC\n */\nfunction generateMasterMOC(structure: Map<string, string[]>, allDocs: AnalyzedDoc[]): string {\n  const lines: string[] = [];\n\n  lines.push('---');\n  lines.push('title: \"Knowledge Graph - Master Index\"');\n  lines.push('type: concept');\n  lines.push('status: active');\n  lines.push('tags:');\n  lines.push('  - moc');\n  lines.push('  - index');\n  lines.push('  - knowledge-graph');\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push('---');\n  lines.push('');\n  lines.push('# Knowledge Graph');\n  lines.push('');\n  lines.push('Welcome to the knowledge graph. This is the master index of all documentation.');\n  lines.push('');\n  lines.push('## Categories');\n  lines.push('');\n\n  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {\n    const count = structure.get(category)?.length || 0;\n    lines.push(`### [[${category}/_MOC|${formatTitle(category)}]]`);\n    lines.push('');\n    lines.push(`${config.description}`);\n    lines.push(`*${count} documents*`);\n    lines.push('');\n  }\n\n  lines.push('## Quick Links');\n  lines.push('');\n  lines.push('- [[PRIMITIVES]] - Core building blocks and technologies');\n  lines.push('- [[guides/_MOC|Getting Started]]');\n  lines.push('- [[standards/_MOC|Coding Standards]]');\n  lines.push('');\n\n  lines.push('## Statistics');\n  lines.push('');\n  lines.push(`- **Total Documents**: ${allDocs.length}`);\n  lines.push(`- **Categories**: ${structure.size}`);\n  lines.push(`- **Generated**: ${new Date().toISOString()}`);\n  lines.push('');\n\n  return lines.join('\\n');\n}\n\n/**\n 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string;\n}\n\n/**\n * Analyzer result\n */\nexport interface AnalyzerResult {\n  success: boolean;\n  filesAnalyzed: number;\n  filesCreated: number;\n  mocFilesCreated: number;\n  errors: string[];\n  analyzed: AnalyzedDoc[];\n  structure: Map<string, string[]>;\n}\n\n/**\n * Weave-NN category structure with descriptions\n */\nconst CATEGORY_STRUCTURE: Record<string, { type: NodeType; description: string; subcategories: string[] }> = {\n  concepts: {\n    type: 'concept',\n    description: 'Abstract concepts, theories, and architectural principles',\n    subcategories: ['architecture', 'patterns', 'principles', 'models'],\n  },\n  components: {\n    type: 'technical',\n    description: 'Reusable technical components and implementations',\n    subcategories: ['ui', 'utilities', 'core', 'shared'],\n  },\n  services: {\n    type: 'service',\n    description: 'Backend services, APIs, and workers',\n    subcategories: ['api', 'workers', 'handlers', 'middleware'],\n  },\n  features: {\n    type: 'feature',\n    description: 'Product features and capabilities',\n    subcategories: ['core', 'advanced', 'experimental'],\n  },\n  integrations: {\n    type: 'integration',\n    description: 'External integrations and adapters',\n    subcategories: ['databases', 'auth', 'storage', 'monitoring', 'third-party'],\n  },\n  standards: {\n    type: 'standard',\n    description: 'Coding standards, conventions, and best practices',\n    subcategories: ['coding', 'documentation', 'testing', 'security'],\n  },\n  guides: {\n    type: 'guide',\n    description: 'How-to guides and tutorials',\n    subcategories: ['getting-started', 'tutorials', 'troubleshooting', 'deployment'],\n  },\n  references: {\n    type: 'technical',\n    description: 'API references and technical documentation',\n    subcategories: ['api', 'cli', 'config', 'schemas'],\n  },\n};\n\n/**\n * Analyze and migrate documentation to weave-nn structure\n */\nexport async function analyzeDocs(options: AnalyzerOptions): Promise<AnalyzerResult> {\n  const {\n    sourceDir,\n    targetDir = 'docs',\n    projectRoot,\n    useClaudeFlow = false,\n    createMOC = true,\n    linkOriginal = true,\n    maxDepth = 3,\n    dryRun = false,\n    verbose = false,\n  } = options;\n\n  const result: AnalyzerResult = {\n    success: true,\n    filesAnalyzed: 0,\n    filesCreated: 0,\n    mocFilesCreated: 0,\n    errors: [],\n    analyzed: [],\n    structure: new Map(),\n  };\n\n  const sourcePath = join(projectRoot, sourceDir);\n  const targetPath = join(projectRoot, targetDir);\n\n  // Validate source exists\n  if (!existsSync(sourcePath)) {\n    result.success = false;\n    result.errors.push(`Source directory not found: ${sourcePath}`);\n    return result;\n  }\n\n  // Create target structure\n  if (!dryRun) {\n    createFullStructure(targetPath);\n  }\n\n  // Find all markdown files\n  const files = await fg('**/*.md', {\n    cwd: sourcePath,\n    ignore: ['node_modules/**', '.git/**', '_templates/**', 'docs-nn/**'],\n  });\n\n  // First pass: Analyze all documents\n  const analyzedDocs: AnalyzedDoc[] = [];\n\n  for (const file of files) {\n    result.filesAnalyzed++;\n    const sourceFile = join(sourcePath, file);\n\n    try {\n      const analyzed = await analyzeDocument(sourceFile, file, sourcePath, {\n        useClaudeFlow,\n        linkOriginal,\n        verbose,\n      });\n      analyzedDocs.push(analyzed);\n\n      // Track structure\n      const category = analyzed.category.split('/')[0];\n      if (!result.structure.has(category)) {\n        result.structure.set(category, []);\n      }\n      result.structure.get(category)!.push(analyzed.title);\n\n    } catch (error) {\n      result.errors.push(`Failed to analyze ${file}: ${error}`);\n    }\n  }\n\n  // Build cross-references between documents\n  buildCrossReferences(analyzedDocs);\n\n  // Second pass: Create new documents\n  for (const doc of analyzedDocs) {\n    try {\n      const targetFile = join(targetPath, doc.newPath);\n\n      if (!dryRun) {\n        mkdirSync(dirname(targetFile), { recursive: true });\n        const content = generateKnowledgeDoc(doc, sourceDir, linkOriginal, analyzedDocs);\n        writeFileSync(targetFile, content, 'utf-8');\n      }\n\n      result.filesCreated++;\n      result.analyzed.push(doc);\n\n    } catch (error) {\n      result.errors.push(`Failed to create ${doc.newPath}: ${error}`);\n    }\n  }\n\n  // Create MOC files for each category\n  if (createMOC && !dryRun) {\n    for (const [category, docs] of result.structure) {\n      const mocPath = join(targetPath, category, '_MOC.md');\n      const mocContent = generateMOC(category, docs, analyzedDocs);\n      writeFileSync(mocPath, mocContent, 'utf-8');\n      result.mocFilesCreated++;\n    }\n\n    // Create master MOC\n    const masterMocPath = join(targetPath, 'MOC.md');\n    const masterMocContent = generateMasterMOC(result.structure, analyzedDocs);\n    writeFileSync(masterMocPath, masterMocContent, 'utf-8');\n    result.mocFilesCreated++;\n\n    // Create PRIMITIVES.md\n    const primitivesPath = join(targetPath, 'PRIMITIVES.md');\n    const primitivesContent = generatePrimitives(analyzedDocs);\n    writeFileSync(primitivesPath, primitivesContent, 'utf-8');\n  }\n\n  result.success = result.errors.length === 0;\n  return result;\n}\n\n/**\n * Analyze a single document\n */\nasync function analyzeDocument(\n  filePath: string,\n  relativePath: string,\n  sourcePath: string,\n  options: { useClaudeFlow?: boolean; linkOriginal?: boolean; verbose?: boolean }\n): Promise<AnalyzedDoc> {\n  const content = readFileSync(filePath, 'utf-8');\n  const { data: existingFrontmatter, content: body } = matter(content);\n\n  const filename = basename(filePath, '.md');\n  const title = existingFrontmatter.title as string || formatTitle(filename);\n\n  // Detect node type and category\n  const { type, category } = detectTypeAndCategory(relativePath, body, existingFrontmatter);\n\n  // Extract tags\n  const tags = extractAllTags(body, existingFrontmatter, relativePath);\n\n  // Extract wikilinks and markdown links\n  const related = extractLinks(body);\n\n  // Extract key concepts\n  const concepts = extractConcepts(body);\n\n  // Find areas needing research\n  const researchNeeded = findResearchAreas(body, filename);\n\n  // Extract existing TODOs and generate new ones\n  const todos = extractAndGenerateTodos(body, content, filename);\n\n  // Generate summary\n  const summary = generateSummary(body, existingFrontmatter);\n\n  // Determine new path\n  const newPath = join(category, formatFilename(filename) + '.md');\n\n  return {\n    originalPath: relativePath,\n    newPath,\n    title,\n    type,\n    tags,\n    related,\n    concepts,\n    researchNeeded,\n    todos,\n    summary,\n    category,\n  };\n}\n\n/**\n * Create full target directory structure\n */\nfunction createFullStructure(targetPath: string): void {\n  // Create all category directories and subcategories\n  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {\n    mkdirSync(join(targetPath, category), { recursive: true });\n    for (const sub of config.subcategories) {\n      mkdirSync(join(targetPath, category, sub), { recursive: true });\n    }\n  }\n\n  // Create meta directories\n  mkdirSync(join(targetPath, '_templates'), { recursive: true });\n  mkdirSync(join(targetPath, '_attachments'), { recursive: true });\n  mkdirSync(join(targetPath, '_archive'), { recursive: true });\n}\n\n/**\n * Detect node type and category from content\n */\nfunction detectTypeAndCategory(\n  filePath: string,\n  content: string,\n  frontmatter: Record<string, unknown>\n): { type: NodeType; category: string } {\n  // Check frontmatter first\n  if (frontmatter.type && frontmatter.category) {\n    return {\n      type: frontmatter.type as NodeType,\n      category: frontmatter.category as string,\n    };\n  }\n\n  const lowerContent = content.toLowerCase();\n  const lowerPath = filePath.toLowerCase();\n\n  // Score each category\n  const scores: Record<string, number> = {};\n\n  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {\n    scores[category] = 0;\n\n    // Path matching\n    if (lowerPath.includes(category)) scores[category] += 10;\n    for (const sub of config.subcategories) {\n      if (lowerPath.includes(sub)) scores[category] += 5;\n    }\n\n    // Content analysis based on type\n    const keywords = getKeywordsForType(config.type);\n    for (const keyword of keywords) {\n      const regex = new RegExp(`\\\\b${keyword}\\\\b`, 'gi');\n      const matches = content.match(regex);\n      if (matches) scores[category] += matches.length;\n    }\n  }\n\n  // Find best match\n  let bestCategory = 'concepts';\n  let bestScore = 0;\n\n  for (const [category, score] of Object.entries(scores)) {\n    if (score > bestScore) {\n      bestScore = score;\n      bestCategory = category;\n    }\n  }\n\n  return {\n    type: CATEGORY_STRUCTURE[bestCategory].type,\n    category: bestCategory,\n  };\n}\n\n/**\n * Get keywords for a node type\n */\nfunction getKeywordsForType(type: NodeType): string[] {\n  const keywords: Record<NodeType, string[]> = {\n    concept: ['concept', 'theory', 'principle', 'overview', 'introduction', 'architecture', 'design', 'pattern'],\n    technical: ['component', 'implementation', 'class', 'function', 'module', 'utility', 'helper'],\n    feature: ['feature', 'capability', 'functionality', 'user', 'requirement', 'use case'],\n    primitive: ['library', 'framework', 'dependency', 'tool', 'sdk'],\n    service: ['api', 'endpoint', 'service', 'server', 'backend', 'worker', 'handler'],\n    guide: ['how to', 'tutorial', 'guide', 'step', 'walkthrough', 'getting started'],\n    standard: ['standard', 'convention', 'best practice', 'rule', 'guideline', 'style'],\n    integration: ['integration', 'connect', 'plugin', 'adapter', 'sync', 'import', 'export'],\n  };\n\n  return keywords[type] || [];\n}\n\n/**\n * Extract all tags from content and path\n */\nfunction extractAllTags(\n  content: string,\n  frontmatter: Record<string, unknown>,\n  filePath: string\n): string[] {\n  const tags = new Set<string>();\n\n  // Add existing frontmatter tags\n  if (Array.isArray(frontmatter.tags)) {\n    frontmatter.tags.forEach(t => tags.add(String(t)));\n  }\n\n  // Extract #tags from content\n  const hashTags = content.match(/#[\\w-]+/g);\n  if (hashTags) {\n    hashTags.forEach(t => tags.add(t.slice(1)));\n  }\n\n  // Generate tags from path\n  const pathParts = filePath.split('/').filter(p => p && !p.endsWith('.md'));\n  pathParts.forEach(p => {\n    if (p.length > 2 && p.length < 20) {\n      tags.add(p.replace(/[-_]/g, '-').toLowerCase());\n    }\n  });\n\n  // Add status tags\n  if (content.match(/\\b(wip|draft|todo)\\b/i)) tags.add('needs-work');\n  if (content.match(/\\b(deprecated|legacy)\\b/i)) tags.add('deprecated');\n  if (content.match(/\\b(experimental|beta)\\b/i)) tags.add('experimental');\n\n  return [...tags].slice(0, 15);\n}\n\n/**\n * Extract wikilinks and markdown links\n */\nfunction extractLinks(content: string): string[] {\n  const links = new Set<string>();\n\n  // Wikilinks\n  const wikilinks = content.match(/\\[\\[([^\\]|]+)(?:\\|[^\\]]+)?\\]\\]/g);\n  if (wikilinks) {\n    wikilinks.forEach(link => {\n      const match = link.match(/\\[\\[([^\\]|]+)/);\n      if (match) links.add(match[1].trim());\n    });\n  }\n\n  // Markdown links (internal only)\n  const mdLinks = content.match(/\\[([^\\]]+)\\]\\(([^)]+)\\)/g);\n  if (mdLinks) {\n    mdLinks.forEach(link => {\n      const match = link.match(/\\]\\(([^)]+)\\)/);\n      if (match && !match[1].startsWith('http')) {\n        links.add(match[1].replace(/\\.md$/, '').trim());\n      }\n    });\n  }\n\n  return [...links];\n}\n\n/**\n * Extract key concepts from content\n */\nfunction extractConcepts(content: string): string[] {\n  const concepts: string[] = [];\n\n  // Look for headers as concepts\n  const headers = content.match(/^##\\s+(.+)$/gm);\n  if (headers) {\n    headers.slice(0, 5).forEach(h => {\n      concepts.push(h.replace(/^##\\s+/, '').trim());\n    });\n  }\n\n  // Look for bold terms as concepts\n  const boldTerms = content.match(/\\*\\*([^*]+)\\*\\*/g);\n  if (boldTerms) {\n    boldTerms.slice(0, 5).forEach(term => {\n      const clean = term.replace(/\\*\\*/g, '').trim();\n      if (clean.length > 2 && clean.length < 50) {\n        concepts.push(clean);\n      }\n    });\n  }\n\n  return [...new Set(concepts)].slice(0, 10);\n}\n\n/**\n * Find areas needing research\n */\nfunction findResearchAreas(content: string, filename: string): string[] {\n  const areas: string[] = [];\n\n  // Look for question marks indicating uncertainty\n  const questions = content.match(/[^.!?]*\\?/g);\n  if (questions) {\n    questions.slice(0, 3).forEach(q => {\n      if (q.length > 10 && q.length < 200) {\n        areas.push(q.trim());\n      }\n    });\n  }\n\n  // Look for placeholders\n  if (content.match(/\\bTBD\\b|\\bTODO\\b|\\bFIXME\\b/i)) {\n    areas.push('Contains placeholders that need completion');\n  }\n\n  // Look for empty sections\n  const emptyHeaders = content.match(/^##[^#\\n]+\\n\\n##/gm);\n  if (emptyHeaders) {\n    areas.push('Has empty sections that need content');\n  }\n\n  // Check for missing content indicators\n  if (content.length < 500) {\n    areas.push('Document is short - may need expansion');\n  }\n\n  return areas;\n}\n\n/**\n * Extract and generate TODOs\n */\nfunction extractAndGenerateTodos(body: string, fullContent: string, filename: string): string[] {\n  const todos: string[] = [];\n\n  // Extract existing TODOs\n  const existingTodos = fullContent.match(/[-*]\\s*\\[[ x]\\]\\s*(.+)/g);\n  if (existingTodos) {\n    existingTodos.forEach(todo => {\n      todos.push(todo.replace(/^[-*]\\s*\\[[ x]\\]\\s*/, '').trim());\n    });\n  }\n\n  // Extract TODO comments\n  const todoComments = fullContent.match(/(?:TODO|FIXME|XXX):\\s*(.+)/gi);\n  if (todoComments) {\n    todoComments.forEach(todo => {\n      todos.push(todo.replace(/^(?:TODO|FIXME|XXX):\\s*/i, '').trim());\n    });\n  }\n\n  // Generate suggested TODOs based on analysis\n  if (!fullContent.match(/^---[\\s\\S]*?---/)) {\n    todos.push('Add proper frontmatter');\n  }\n\n  if (!fullContent.match(/\\[\\[/)) {\n    todos.push('Add wikilinks to related documents');\n  }\n\n  if (!fullContent.match(/^##\\s/m)) {\n    todos.push('Add section structure with headers');\n  }\n\n  return [...new Set(todos)].slice(0, 10);\n}\n\n/**\n * Generate summary from content\n */\nfunction generateSummary(body: string, frontmatter: Record<string, unknown>): string {\n  // Use existing description\n  if (frontmatter.description) {\n    return String(frontmatter.description);\n  }\n\n  // Extract first meaningful paragraph\n  const lines = body.split('\\n');\n  for (const line of lines) {\n    const trimmed = line.trim();\n    if (trimmed && !trimmed.startsWith('#') && !trimmed.startsWith('```') && trimmed.length > 30) {\n      return trimmed.length > 200 ? trimmed.slice(0, 197) + '...' : trimmed;\n    }\n  }\n\n  return 'Documentation requiring summary.';\n}\n\n/**\n * Build cross-references between documents\n */\nfunction buildCrossReferences(docs: AnalyzedDoc[]): void {\n  const titleMap = new Map<string, AnalyzedDoc>();\n\n  // Build title lookup\n  docs.forEach(doc => {\n    titleMap.set(doc.title.toLowerCase(), doc);\n    titleMap.set(formatFilename(doc.title), doc);\n  });\n\n  // Update related links\n  docs.forEach(doc => {\n    const newRelated: string[] = [];\n\n    doc.related.forEach(link => {\n      const linkedDoc = titleMap.get(link.toLowerCase()) || titleMap.get(formatFilename(link));\n      if (linkedDoc) {\n        newRelated.push(linkedDoc.title);\n      } else {\n        newRelated.push(link);\n      }\n    });\n\n    // Find related docs by shared tags\n    const sharedTagDocs = docs.filter(other =>\n      other !== doc &&\n      other.tags.some(t => doc.tags.includes(t))\n    );\n\n    sharedTagDocs.slice(0, 3).forEach(other => {\n      if (!newRelated.includes(other.title)) {\n        newRelated.push(other.title);\n      }\n    });\n\n    doc.related = [...new Set(newRelated)].slice(0, 10);\n  });\n}\n\n/**\n * Generate knowledge document content\n */\nfunction generateKnowledgeDoc(\n  doc: AnalyzedDoc,\n  sourceDir: string,\n  linkOriginal: boolean,\n  allDocs: AnalyzedDoc[]\n): string {\n  const lines: string[] = [];\n\n  // Frontmatter\n  lines.push('---');\n  lines.push(`title: \"${doc.title}\"`);\n  lines.push(`type: ${doc.type}`);\n  lines.push(`status: active`);\n  if (doc.tags.length > 0) {\n    lines.push('tags:');\n    doc.tags.forEach(tag => lines.push(`  - ${tag}`));\n  }\n  lines.push(`category: ${doc.category}`);\n  lines.push(`description: \"${doc.summary.replace(/\"/g, '\\\\\"')}\"`);\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push(`updated: ${new Date().toISOString().split('T')[0]}`);\n  if (linkOriginal) {\n    lines.push(`original: \"${sourceDir}/${doc.originalPath}\"`);\n  }\n  if (doc.related.length > 0) {\n    lines.push('related:');\n    doc.related.slice(0, 5).forEach(r => lines.push(`  - \"[[${r}]]\"`));\n  }\n  lines.push('---');\n  lines.push('');\n\n  // Title\n  lines.push(`# ${doc.title}`);\n  lines.push('');\n\n  // Summary\n  lines.push('## Overview');\n  lines.push('');\n  lines.push(doc.summary);\n  lines.push('');\n\n  // Original reference\n  if (linkOriginal) {\n    lines.push(`> [!info] Original Documentation`);\n    lines.push(`> See [[${sourceDir}/${doc.originalPath}|original document]] for full details.`);\n    lines.push('');\n  }\n\n  // Key concepts\n  if (doc.concepts.length > 0) {\n    lines.push('## Key Concepts');\n    lines.push('');\n    doc.concepts.forEach(concept => {\n      lines.push(`- **${concept}**`);\n    });\n    lines.push('');\n  }\n\n  // Related documents\n  if (doc.related.length > 0) {\n    lines.push('## Related');\n    lines.push('');\n    doc.related.forEach(rel => {\n      lines.push(`- [[${rel}]]`);\n    });\n    lines.push('');\n  }\n\n  // Research needed\n  if (doc.researchNeeded.length > 0) {\n    lines.push('## Research Needed');\n    lines.push('');\n    lines.push('> [!warning] Areas Requiring Further Research');\n    doc.researchNeeded.forEach(area => {\n      lines.push(`> - ${area}`);\n    });\n    lines.push('');\n  }\n\n  // TODOs\n  if (doc.todos.length > 0) {\n    lines.push('## TODOs');\n    lines.push('');\n    doc.todos.forEach(todo => {\n      lines.push(`- [ ] ${todo}`);\n    });\n    lines.push('');\n  }\n\n  // Tags section\n  lines.push('## Tags');\n  lines.push('');\n  lines.push(doc.tags.map(t => `#${t}`).join(' '));\n  lines.push('');\n\n  return lines.join('\\n');\n}\n\n/**\n * Generate MOC (Map of Content) for a category\n */\nfunction generateMOC(category: string, docTitles: string[], allDocs: AnalyzedDoc[]): string {\n  const config = CATEGORY_STRUCTURE[category];\n  const categoryDocs = allDocs.filter(d => d.category.startsWith(category));\n\n  const lines: string[] = [];\n\n  lines.push('---');\n  lines.push(`title: \"${formatTitle(category)} - Map of Content\"`);\n  lines.push('type: concept');\n  lines.push('status: active');\n  lines.push('tags:');\n  lines.push('  - moc');\n  lines.push(`  - ${category}`);\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push('---');\n  lines.push('');\n  lines.push(`# ${formatTitle(category)}`);\n  lines.push('');\n  lines.push(config?.description || `Documentation related to ${category}.`);\n  lines.push('');\n\n  // Group by subcategory\n  const bySubcategory = new Map<string, AnalyzedDoc[]>();\n  categoryDocs.forEach(doc => {\n    const parts = doc.category.split('/');\n    const sub = parts[1] || 'general';\n    if (!bySubcategory.has(sub)) {\n      bySubcategory.set(sub, []);\n    }\n    bySubcategory.get(sub)!.push(doc);\n  });\n\n  for (const [sub, docs] of bySubcategory) {\n    lines.push(`## ${formatTitle(sub)}`);\n    lines.push('');\n    docs.forEach(doc => {\n      lines.push(`- [[${doc.title}]] - ${doc.summary.slice(0, 60)}...`);\n    });\n    lines.push('');\n  }\n\n  lines.push('---');\n  lines.push(`*${categoryDocs.length} documents in this category*`);\n\n  return lines.join('\\n');\n}\n\n/**\n * Generate master MOC\n */\nfunction generateMasterMOC(structure: Map<string, string[]>, allDocs: AnalyzedDoc[]): string {\n  const lines: string[] = [];\n\n  lines.push('---');\n  lines.push('title: \"Knowledge Graph - Master Index\"');\n  lines.push('type: concept');\n  lines.push('status: active');\n  lines.push('tags:');\n  lines.push('  - moc');\n  lines.push('  - index');\n  lines.push('  - knowledge-graph');\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push('---');\n  lines.push('');\n  lines.push('# Knowledge Graph');\n  lines.push('');\n  lines.push('Welcome to the knowledge graph. This is the master index of all documentation.');\n  lines.push('');\n  lines.push('## Categories');\n  lines.push('');\n\n  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {\n    const count = structure.get(category)?.length || 0;\n    lines.push(`### [[${category}/_MOC|${formatTitle(category)}]]`);\n    lines.push('');\n    lines.push(`${config.description}`);\n    lines.push(`*${count} documents*`);\n    lines.push('');\n  }\n\n  lines.push('## Quick Links');\n  lines.push('');\n  lines.push('- [[PRIMITIVES]] - Core building blocks and technologies');\n  lines.push('- [[guides/_MOC|Getting Started]]');\n  lines.push('- [[standards/_MOC|Coding Standards]]');\n  lines.push('');\n\n  lines.push('## Statistics');\n  lines.push('');\n  lines.push(`- **Total Documents**: ${allDocs.length}`);\n  lines.push(`- **Categories**: ${structure.size}`);\n  lines.push(`- **Generated**: ${new Date().toISOString()}`);\n  lines.push('');\n\n  return lines.join('\\n');\n}\n\n/**\n * Generate PRIMITIVES.md\n */\nfunction generatePrimitives(allDocs: AnalyzedDoc[]): string {\n  const lines: string[] = [];\n\n  lines.push('---');\n  lines.push('title: \"Primitives\"');\n  lines.push('type: primitive');\n  lines.push('status: active');\n  lines.push('tags:');\n  lines.push('  - primitives');\n  lines.push('  - foundation');\n  lines.push('  - knowledge-graph');\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push('---');\n  lines.push('');\n  lines.push('# Primitives');\n  lines.push('');\n  lines.push('Core building blocks and foundational technologies used in this project.');\n  lines.push('');\n\n  // Group docs by type\n  const byType = new Map<NodeType, AnalyzedDoc[]>();\n  allDocs.forEach(doc => {\n    if (!byType.has(doc.type)) {\n      byType.set(doc.type, []);\n    }\n    byType.get(doc.type)!.push(doc);\n  });\n\n  for (const [type, docs] of byType) {\n    lines.push(`## ${formatTitle(type)}`);\n    lines.push('');\n    docs.slice(0, 10).forEach(doc => {\n      lines.push(`- [[${doc.title}]]`);\n    });\n    if (docs.length > 10) {\n      lines.push(`- *...and ${docs.length - 10} more*`);\n    }\n    lines.push('');\n  }\n\n  return lines.join('\\n');\n}\n\n/**\n * Format filename from title\n */\nfunction formatFilename(title: string): string {\n  return title\n    .toLowerCase()\n    .replace(/[^a-z0-9]+/g, '-')\n    .replace(/^-|-$/g, '')\n    .slice(0, 50);\n}\n\n/**\n * Format title from filename\n */\nfunction formatTitle(filename: string): string {\n  return filename\n    .replace(/[-_]/g, ' ')\n    .replace(/\\b\\w/g, c => c.toUpperCase())\n    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package/dist/generators/docs-convert.d.ts

@@ -11,7 +11,7 @@ import type { NodeType, NodeStatus } from '../core/types.js';
 export interface ConvertOptions {
     /** Source directory with existing docs */
     sourceDir: string;
-    /** Target directory (default: docs-nn) */
+    /** Target directory (default: docs) */
     targetDir?: string;
     /** Project root for path resolution */
     projectRoot: string;

package/dist/generators/docs-convert.d.ts.map

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package/dist/generators/docs-convert.js

@@ -119,7 +119,7 @@ const PATH_PATTERNS = [
 async function convertDocs(options) {
   const {
     sourceDir,
-    targetDir = "docs-nn",
+    targetDir = "docs",
     projectRoot,
     preserveOriginal = true,
     force = false,

package/dist/generators/docs-convert.js.map

@@ -1 +1 @@
-{"version":3,"file":"docs-convert.js","sources":["../../src/generators/docs-convert.ts"],"sourcesContent":["/**\n * Docs Converter\n *\n * Converts existing documentation to weave-nn structure with proper\n * frontmatter and directory organization.\n */\n\nimport { existsSync, mkdirSync, readFileSync, writeFileSync, copyFileSync } from 'fs';\nimport { join, basename, dirname, relative, extname } from 'path';\nimport fg from 'fast-glob';\nimport matter from 'gray-matter';\nimport type { NodeType, NodeStatus, NodeFrontmatter } from '../core/types.js';\n\n/**\n * Conversion options\n */\nexport interface ConvertOptions {\n  /** Source directory with existing docs */\n  sourceDir: string;\n  /** Target directory (default: docs-nn) */\n  targetDir?: string;\n  /** Project root for path resolution */\n  projectRoot: string;\n  /** Preserve original files (copy instead of move) */\n  preserveOriginal?: boolean;\n  /** Overwrite existing files in target */\n  force?: boolean;\n  /** Auto-categorize based on content analysis */\n  autoCategory?: boolean;\n  /** Dry run - show what would be done */\n  dryRun?: boolean;\n}\n\n/**\n * Frontmatter options\n */\nexport interface FrontmatterOptions {\n  /** Target file or directory */\n  target: string;\n  /** Project root */\n  projectRoot: string;\n  /** Override type detection */\n  type?: NodeType;\n  /** Override status */\n  status?: NodeStatus;\n  /** Additional tags to add */\n  tags?: string[];\n  /** Force overwrite existing frontmatter */\n  force?: boolean;\n  /** Dry run */\n  dryRun?: boolean;\n}\n\n/**\n * Conversion result\n */\nexport interface ConvertResult {\n  success: boolean;\n  filesProcessed: number;\n  filesConverted: number;\n  filesSkipped: number;\n  errors: string[];\n  converted: Array<{\n    source: string;\n    target: string;\n    type: NodeType;\n  }>;\n}\n\n/**\n * Frontmatter result\n */\nexport interface FrontmatterResult {\n  success: boolean;\n  filesProcessed: number;\n  filesUpdated: number;\n  filesSkipped: number;\n  errors: string[];\n}\n\n/**\n * Weave-NN directory structure mapping\n */\nconst CATEGORY_DIRS: Record<NodeType, string> = {\n  concept: 'concepts',\n  technical: 'components',\n  feature: 'features',\n  primitive: 'integrations',\n  service: 'services',\n  guide: 'guides',\n  standard: 'standards',\n  integration: 'integrations',\n};\n\n/**\n * Keywords for content-based categorization\n */\nconst CATEGORY_KEYWORDS: Record<NodeType, string[]> = {\n  concept: [\n    'overview', 'introduction', 'theory', 'principle', 'concept',\n    'philosophy', 'approach', 'methodology', 'paradigm', 'model',\n  ],\n  technical: [\n    'component', 'implementation', 'class', 'function', 'module',\n    'algorithm', 'data structure', 'interface', 'abstract', 'utility',\n  ],\n  feature: [\n    'feature', 'capability', 'functionality', 'use case', 'user story',\n    'requirement', 'specification', 'product', 'roadmap',\n  ],\n  primitive: [\n    'library', 'framework', 'dependency', 'package', 'tool',\n    'sdk', 'runtime', 'platform', 'language',\n  ],\n  service: [\n    'api', 'endpoint', 'service', 'server', 'backend', 'microservice',\n    'rest', 'graphql', 'webhook', 'worker', 'queue',\n  ],\n  guide: [\n    'how to', 'tutorial', 'guide', 'walkthrough', 'step by step',\n    'getting started', 'setup', 'installation', 'configuration',\n  ],\n  standard: [\n    'standard', 'convention', 'best practice', 'rule', 'policy',\n    'guideline', 'coding style', 'lint', 'format',\n  ],\n  integration: [\n    'integration', 'connect', 'plugin', 'adapter', 'bridge',\n    'sync', 'import', 'export', 'webhook',\n  ],\n};\n\n/**\n * Path-based categorization patterns\n */\nconst PATH_PATTERNS: Array<{ pattern: RegExp; type: NodeType }> = [\n  { pattern: /\\/(api|endpoints?|routes?)\\//i, type: 'service' },\n  { pattern: /\\/(guide|tutorial|howto|getting-started)\\//i, type: 'guide' },\n  { pattern: /\\/(component|ui|widget)\\//i, type: 'technical' },\n  { pattern: /\\/(feature|capability)\\//i, type: 'feature' },\n  { pattern: /\\/(standard|convention|style)\\//i, type: 'standard' },\n  { pattern: /\\/(integration|plugin|adapter)\\//i, type: 'integration' },\n  { pattern: /\\/(service|worker|job)\\//i, type: 'service' },\n  { pattern: /\\/(concept|architecture|design)\\//i, type: 'concept' },\n];\n\n/**\n * Convert existing docs to weave-nn structure\n */\nexport async function convertDocs(options: ConvertOptions): Promise<ConvertResult> {\n  const {\n    sourceDir,\n    targetDir = 'docs-nn',\n    projectRoot,\n    preserveOriginal = true,\n    force = false,\n    autoCategory = true,\n    dryRun = false,\n  } = options;\n\n  const result: ConvertResult = {\n    success: true,\n    filesProcessed: 0,\n    filesConverted: 0,\n    filesSkipped: 0,\n    errors: [],\n    converted: [],\n  };\n\n  const sourcePath = join(projectRoot, sourceDir);\n  const targetPath = join(projectRoot, targetDir);\n\n  // Validate source exists\n  if (!existsSync(sourcePath)) {\n    result.success = false;\n    result.errors.push(`Source directory not found: ${sourcePath}`);\n    return result;\n  }\n\n  // Create target structure\n  if (!dryRun) {\n    createTargetStructure(targetPath);\n  }\n\n  // Find all markdown files\n  const files = await fg('**/*.md', {\n    cwd: sourcePath,\n    ignore: ['node_modules/**', '.git/**', '_templates/**'],\n  });\n\n  for (const file of files) {\n    result.filesProcessed++;\n    const sourceFile = join(sourcePath, file);\n\n    try {\n      // Read and parse file\n      const content = readFileSync(sourceFile, 'utf-8');\n      const { data: existingFrontmatter, content: body } = matter(content);\n\n      // Determine node type\n      const nodeType = autoCategory\n        ? detectNodeType(file, body, existingFrontmatter)\n        : (existingFrontmatter.type as NodeType) || 'concept';\n\n      // Determine target path\n      const targetSubdir = CATEGORY_DIRS[nodeType];\n      const targetFile = join(targetPath, targetSubdir, basename(file));\n\n      // Check if target exists\n      if (existsSync(targetFile) && !force) {\n        result.filesSkipped++;\n        continue;\n      }\n\n      // Generate frontmatter\n      const frontmatter = generateFrontmatter(file, body, nodeType, existingFrontmatter);\n\n      // Build new content\n      const newContent = buildMarkdownWithFrontmatter(frontmatter, body);\n\n      if (!dryRun) {\n        // Ensure directory exists\n        mkdirSync(dirname(targetFile), { recursive: true });\n\n        // Write converted file\n        writeFileSync(targetFile, newContent, 'utf-8');\n      }\n\n      result.filesConverted++;\n      result.converted.push({\n        source: file,\n        target: relative(projectRoot, targetFile),\n        type: nodeType,\n      });\n\n    } catch (error) {\n      result.errors.push(`Failed to convert ${file}: ${error}`);\n    }\n  }\n\n  result.success = result.errors.length === 0;\n  return result;\n}\n\n/**\n * Add or update frontmatter in existing files\n */\nexport async function addFrontmatter(options: FrontmatterOptions): Promise<FrontmatterResult> {\n  const {\n    target,\n    projectRoot,\n    type,\n    status = 'active',\n    tags = [],\n    force = false,\n    dryRun = false,\n  } = options;\n\n  const result: FrontmatterResult = {\n    success: true,\n    filesProcessed: 0,\n    filesUpdated: 0,\n    filesSkipped: 0,\n    errors: [],\n  };\n\n  const targetPath = join(projectRoot, target);\n\n  // Handle single file or directory\n  let files: string[];\n  if (existsSync(targetPath) && !targetPath.endsWith('.md')) {\n    // Directory - find all markdown files\n    files = await fg('**/*.md', {\n      cwd: targetPath,\n      ignore: ['node_modules/**', '.git/**', '_templates/**'],\n      absolute: true,\n    });\n  } else if (existsSync(targetPath)) {\n    files = [targetPath];\n  } else {\n    result.success = false;\n    result.errors.push(`Target not found: ${targetPath}`);\n    return result;\n  }\n\n  for (const file of files) {\n    result.filesProcessed++;\n\n    try {\n      const content = readFileSync(file, 'utf-8');\n      const { data: existingFrontmatter, content: body } = matter(content);\n\n      // Skip if has frontmatter and not forcing\n      if (Object.keys(existingFrontmatter).length > 0 && !force) {\n        result.filesSkipped++;\n        continue;\n      }\n\n      // Detect type if not specified\n      const relPath = relative(projectRoot, file);\n      const nodeType = type || detectNodeType(relPath, body, existingFrontmatter);\n\n      // Generate frontmatter\n      const frontmatter = generateFrontmatter(\n        relPath,\n        body,\n        nodeType,\n        force ? {} : existingFrontmatter,\n        status,\n        tags\n      );\n\n      // Build new content\n      const newContent = buildMarkdownWithFrontmatter(frontmatter, body);\n\n      if (!dryRun) {\n        writeFileSync(file, newContent, 'utf-8');\n      }\n\n      result.filesUpdated++;\n\n    } catch (error) {\n      result.errors.push(`Failed to update ${file}: ${error}`);\n    }\n  }\n\n  result.success = result.errors.length === 0;\n  return result;\n}\n\n/**\n * Validate frontmatter in files\n */\nexport async function validateFrontmatter(\n  target: string,\n  projectRoot: string\n): Promise<{\n  valid: number;\n  invalid: number;\n  missing: number;\n  issues: Array<{ file: string; issues: string[] }>;\n}> {\n  const result = {\n    valid: 0,\n    invalid: 0,\n    missing: 0,\n    issues: [] as Array<{ file: string; issues: string[] }>,\n  };\n\n  const targetPath = join(projectRoot, target);\n\n  const files = await fg('**/*.md', {\n    cwd: targetPath,\n    ignore: ['node_modules/**', '.git/**', '_templates/**'],\n    absolute: true,\n  });\n\n  const validTypes: NodeType[] = [\n    'concept', 'technical', 'feature', 'primitive',\n    'service', 'guide', 'standard', 'integration',\n  ];\n\n  const validStatuses: NodeStatus[] = ['draft', 'active', 'deprecated', 'archived'];\n\n  for (const file of files) {\n    const content = readFileSync(file, 'utf-8');\n    const { data: frontmatter } = matter(content);\n    const fileIssues: string[] = [];\n\n    if (Object.keys(frontmatter).length === 0) {\n      result.missing++;\n      fileIssues.push('Missing frontmatter');\n    } else {\n      // Check required fields\n      if (!frontmatter.title) {\n        fileIssues.push('Missing title');\n      }\n      if (!frontmatter.type) {\n        fileIssues.push('Missing type');\n      } else if (!validTypes.includes(frontmatter.type)) {\n        fileIssues.push(`Invalid type: ${frontmatter.type}`);\n      }\n      if (frontmatter.status && !validStatuses.includes(frontmatter.status)) {\n        fileIssues.push(`Invalid status: ${frontmatter.status}`);\n      }\n      if (!frontmatter.created) {\n        fileIssues.push('Missing created date');\n      }\n    }\n\n    if (fileIssues.length > 0) {\n      result.invalid++;\n      result.issues.push({\n        file: relative(projectRoot, file),\n        issues: fileIssues,\n      });\n    } else if (Object.keys(frontmatter).length > 0) {\n      result.valid++;\n    }\n  }\n\n  return result;\n}\n\n// ============================================================================\n// Helper Functions\n// ============================================================================\n\n/**\n * Create target directory structure\n */\nfunction createTargetStructure(targetPath: string): void {\n  const dirs = [\n    '',\n    'concepts',\n    'concepts/architecture',\n    'concepts/patterns',\n    'components',\n    'components/ui',\n    'components/utilities',\n    'services',\n    'services/api',\n    'services/workers',\n    'features',\n    'features/core',\n    'features/advanced',\n    'integrations',\n    'integrations/databases',\n    'integrations/auth',\n    'standards',\n    'standards/coding',\n    'standards/documentation',\n    'guides',\n    'guides/getting-started',\n    'guides/tutorials',\n    'references',\n    'references/api',\n    '_templates',\n    '_attachments',\n  ];\n\n  for (const dir of dirs) {\n    const fullPath = join(targetPath, dir);\n    if (!existsSync(fullPath)) {\n      mkdirSync(fullPath, { recursive: true });\n    }\n  }\n}\n\n/**\n * Detect node type from file path and content\n */\nfunction detectNodeType(\n  filePath: string,\n  content: string,\n  existingFrontmatter: Record<string, unknown>\n): NodeType {\n  // Use existing type if valid\n  const validTypes: NodeType[] = [\n    'concept', 'technical', 'feature', 'primitive',\n    'service', 'guide', 'standard', 'integration',\n  ];\n\n  if (existingFrontmatter.type && validTypes.includes(existingFrontmatter.type as NodeType)) {\n    return existingFrontmatter.type as NodeType;\n  }\n\n  // Check path patterns\n  for (const { pattern, type } of PATH_PATTERNS) {\n    if (pattern.test(filePath)) {\n      return type;\n    }\n  }\n\n  // Analyze content\n  const lowerContent = content.toLowerCase();\n  const scores: Record<NodeType, number> = {\n    concept: 0,\n    technical: 0,\n    feature: 0,\n    primitive: 0,\n    service: 0,\n    guide: 0,\n    standard: 0,\n    integration: 0,\n  };\n\n  for (const [nodeType, keywords] of Object.entries(CATEGORY_KEYWORDS)) {\n    for (const keyword of keywords) {\n      const regex = new RegExp(`\\\\b${keyword}\\\\b`, 'gi');\n      const matches = lowerContent.match(regex);\n      if (matches) {\n        scores[nodeType as NodeType] += matches.length;\n      }\n    }\n  }\n\n  // Find highest scoring type\n  let maxScore = 0;\n  let detectedType: NodeType = 'concept';\n\n  for (const [nodeType, score] of Object.entries(scores)) {\n    if (score > maxScore) {\n      maxScore = score;\n      detectedType = nodeType as NodeType;\n    }\n  }\n\n  return detectedType;\n}\n\n/**\n * Generate frontmatter for a file\n */\nfunction generateFrontmatter(\n  filePath: string,\n  content: string,\n  nodeType: NodeType,\n  existing: Record<string, unknown> = {},\n  status: NodeStatus = 'active',\n  additionalTags: string[] = []\n): NodeFrontmatter {\n  const filename = basename(filePath, '.md');\n  const title = existing.title as string || formatTitle(filename);\n\n  // Extract tags from content\n  const extractedTags = extractTags(content);\n  const allTags = [...new Set([\n    ...(existing.tags as string[] || []),\n    ...extractedTags,\n    ...additionalTags,\n  ])];\n\n  // Get dates\n  const now = new Date().toISOString().split('T')[0];\n  const created = existing.created as string || now;\n\n  return {\n    title,\n    type: nodeType,\n    status: existing.status as NodeStatus || status,\n    tags: allTags.length > 0 ? allTags : undefined,\n    category: existing.category as string || undefined,\n    description: existing.description as string || extractDescription(content),\n    created,\n    updated: now,\n    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package/dist/node_modules/@typescript-eslint/project-service/dist/index.js

@@ -1,4 +1,4 @@
-import { __exports as dist } from "../../../../_virtual/index8.js";
+import { __exports as dist } from "../../../../_virtual/index7.js";
 import { __require as requireCreateProjectService } from "./createProjectService.js";
 var hasRequiredDist;
 function requireDist() {

package/dist/node_modules/@typescript-eslint/typescript-estree/node_modules/minimatch/dist/commonjs/index.js

@@ -1,4 +1,4 @@
-import { __exports as commonjs } from "../../../../../../../_virtual/index9.js";
+import { __exports as commonjs } from "../../../../../../../_virtual/index8.js";
 import { __require as requireBraceExpansion } from "../../../../../../brace-expansion/index.js";
 import { __require as requireAssertValidPattern } from "./assert-valid-pattern.js";
 import { __require as requireAst } from "./ast.js";

package/dist/node_modules/fdir/dist/index.js

@@ -1,4 +1,4 @@
-import { __exports as dist } from "../../../_virtual/index10.js";
+import { __exports as dist } from "../../../_virtual/index11.js";
 import path__default from "path";
 import require$$1 from "fs";
 import { __require as requirePicomatch } from "../../picomatch/index.js";

package/dist/node_modules/tinyglobby/dist/index.js

@@ -1,4 +1,4 @@
-import { __exports as dist } from "../../../_virtual/index7.js";
+import { __exports as dist } from "../../../_virtual/index9.js";
 import require$$1 from "fs";
 import path__default from "path";
 import require$$2 from "url";

package/dist/node_modules/ts-api-utils/lib/index.js

@@ -1,4 +1,4 @@
-import { __exports as lib } from "../../../_virtual/index11.js";
+import { __exports as lib } from "../../../_virtual/index10.js";
 import { __require as requireTypescript } from "../../typescript/lib/typescript.js";
 var hasRequiredLib;
 function requireLib() {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@weavelogic/knowledge-graph-agent",
-  "version": "0.9.0",
+  "version": "0.10.1",
   "description": "Knowledge graph agent for Claude Code - generates knowledge graphs, initializes docs, and integrates with claude-flow",
   "type": "module",
   "main": "dist/index.js",