@weavelogic/knowledge-graph-agent 0.3.0 → 0.6.0

package/dist/index.js

@@ -37,7 +37,18 @@ import { LogLevel, Logger, createLogger, createProgressLogger, getLogger, parseL
 import { KnowledgeGraphMCPServer, createMCPServer, runServer } from "./mcp-server/server.js";
 import { getToolCategories, getToolDefinition, getToolDefinitions, getToolHandler, initializeTools, registerTool } from "./mcp-server/tools/registry.js";
 import "path";
+import { createLocalConfig, createPostgresConfig, createVercelConfig, createWorkflowConfig, defaultConfig, validateWorkflowConfig } from "./workflow/config.js";
+import "./workflow/adapters/goap-adapter.js";
+import "./workflow/services/workflow-service.js";
 import { createErrorResult, createSuccessResult, handleError, handleToolCall } from "./mcp-server/handlers/index.js";
+import { DEFAULT_DASHBOARD_PORT, DEFAULT_DATABASE_PATH, DEFAULT_GRAPHQL_PORT, HEALTH_CHECK_INTERVAL, SHUTDOWN_TIMEOUT } from "./server/types.js";
+import { SharedServices, createDefaultConfig, createSharedServices, getSharedServices } from "./server/shared-services.js";
+import { ServerManager, createServerManager } from "./server/manager.js";
+import { ServiceContainer, createServiceContainer, getServiceContainer, hasServiceContainer, shutdownServiceContainer } from "./server/container.js";
+import { TypedEventBus, createNodeTypeFilter, createSourceFilter, createSubscriptionIterator, createTypedEventBus } from "./server/event-bus.js";
+import { createGraphQLServer } from "./graphql/server.js";
+import { createContextFactory, hasScope, isGraphQLContext, requireAuth, requireScope } from "./graphql/context.js";
+import { DateTimeScalar, FilePathScalar, JSONScalar, UUIDScalar, customScalars, scalarTypeDefs } from "./graphql/scalars.js";
 import { FileWatcherService, ServiceManager, createServiceManager } from "./services/index.js";
 import { ConfigManager, createConfigManager, getDefaultConfig } from "./config/index.js";
 import { HealthMonitor, createCacheCheck, createDatabaseCheck, createDiskCheck, createHealthMonitor, createMemoryCheck } from "./health/index.js";
@@ -45,6 +56,21 @@ import { Chunker, chunkDocument, createChunker } from "./chunking/index.js";
 import { BackupManager, IntegrityChecker, checkDatabaseIntegrity, createBackupManager, createIntegrityChecker } from "./recovery/index.js";
 import { AdvancedCache, createAdvancedCache } from "./caching/index.js";
 import { DecisionTracker, createDecisionTracker, getDecisionTracker } from "./reasoning/index.js";
+import { createDefaultPluginMetadata, createPluginId, isAnalysisResult, isAnalyzerPlugin, isPluginManifest, isValidSemver } from "./plugins/types.js";
+import { PluginLoaderImpl, PluginManagerImpl, PluginRegistryImpl, createDefaultPluginManager, createPluginLoader, createPluginManager, createPluginRegistry } from "./plugins/manager.js";
+import { AdvancedPluginRegistry, createAdvancedPluginRegistry } from "./plugins/registry.js";
+import { AdvancedPluginLoader, createAdvancedPluginLoader } from "./plugins/loader.js";
+import { DependencyHealthAnalyzerPlugin, DependencyHealthPlugin, analyzeDependencyHealth, createDependencyHealthAnalyzerPlugin, createDependencyHealthPlugin, enhanceDependenciesWithHealth } from "./plugins/analyzers/dependency-health/index.js";
+import { CodeComplexityPlugin, analyzeComplexity, pluginMetadata, createComplexityPlugin, registerWithSeedGenerator } from "./plugins/analyzers/code-complexity/index.js";
+import { DependencyHealthAnalyzer, createDependencyHealthAnalyzer } from "./plugins/analyzers/dependency-health/analyzer.js";
+import { DependencyGraphGenerator, createDependencyGraphGenerator } from "./plugins/analyzers/dependency-health/graph-generator.js";
+import { NpmClient, createNpmClient } from "./plugins/analyzers/dependency-health/npm-client.js";
+import { VulnerabilityChecker, createVulnerabilityChecker } from "./plugins/analyzers/dependency-health/vulnerability.js";
+import { CodeComplexityAnalyzerPlugin, createCodeComplexityAnalyzerPlugin } from "./plugins/analyzers/code-complexity/plugin.js";
+import { CodeComplexityAnalyzer, analyzeFileComplexity, analyzeProjectComplexity } from "./plugins/analyzers/code-complexity/analyzer.js";
+import { ComplexityGraphGenerator, generateComplexityNodes } from "./plugins/analyzers/code-complexity/graph-generator.js";
+import { calculateCognitiveComplexity, calculateCyclomaticComplexity, calculateHalsteadMetrics, calculateMaintainabilityIndex, calculateMaxNestingDepth } from "./plugins/analyzers/code-complexity/metrics.js";
+import { DEFAULT_THRESHOLDS, EMPTY_HALSTEAD_METRICS } from "./plugins/analyzers/code-complexity/types.js";
 async function quickInit(options) {
   const {
     projectRoot,
@@ -112,6 +138,8 @@ async function quickInit(options) {
 }
 export {
   AdvancedCache,
+  AdvancedPluginLoader,
+  AdvancedPluginRegistry,
   AgentRegistry,
   AgentStatus,
   AgentType,
@@ -124,18 +152,35 @@ export {
   CircuitOpenError,
   CircuitState,
   ClaudeFlowIntegration,
+  CodeComplexityAnalyzer,
+  CodeComplexityAnalyzerPlugin,
+  CodeComplexityPlugin,
   CoderAgent,
+  ComplexityGraphGenerator,
   ComplianceStatus,
   ConfigManager,
+  DEFAULT_DASHBOARD_PORT,
+  DEFAULT_DATABASE_PATH,
+  DEFAULT_GRAPHQL_PORT,
+  DEFAULT_THRESHOLDS,
+  DateTimeScalar,
   DecisionTracker,
   DeepAnalyzer,
+  DependencyGraphGenerator,
+  DependencyHealthAnalyzer,
+  DependencyHealthAnalyzerPlugin,
+  DependencyHealthPlugin,
+  EMPTY_HALSTEAD_METRICS,
   ErrorCategory,
   ErrorSeverity,
+  FilePathScalar,
   FileWatcherService,
   GraphLayer,
+  HEALTH_CHECK_INTERVAL,
   HealthMonitor,
   IRBStatus,
   IntegrityChecker,
+  JSONScalar,
   KnowledgeGraphDatabase,
   KnowledgeGraphError,
   KnowledgeGraphMCPServer,
@@ -143,36 +188,59 @@ export {
   LogLevel,
   Logger,
   MessageType,
+  NpmClient,
+  PluginLoaderImpl,
+  PluginManagerImpl,
+  PluginRegistryImpl,
   ResearcherAgent,
   RetriesExhaustedError,
   RulesEngine,
+  SHUTDOWN_TIMEOUT,
   SOPCategory,
   SOPPriority,
   SeedGenerator,
+  ServerManager,
+  ServiceContainer,
   ServiceManager,
   ShadowCache,
+  SharedServices,
   TaskPriority,
   TesterAgent,
+  TypedEventBus,
+  UUIDScalar,
   VaultMemorySync,
+  VulnerabilityChecker,
   WorkflowRegistry,
   WorkflowStatus,
   addComplianceOverlay,
   addFrontmatter,
   addProjectLayer,
   addSection,
+  analyzeComplexity,
   analyzeDeep,
+  analyzeDependencyHealth,
   analyzeDocs,
+  analyzeFileComplexity,
   analyzeGaps,
+  analyzeProjectComplexity,
   analyzeSeed,
   calculateBackoff,
+  calculateCognitiveComplexity,
+  calculateCyclomaticComplexity,
+  calculateHalsteadMetrics,
+  calculateMaintainabilityIndex,
+  calculateMaxNestingDepth,
   calculateProgress,
   checkCompliance,
   checkDatabaseIntegrity,
   checkSOPCompliance,
   chunkDocument,
   classifyError,
+  pluginMetadata as codeComplexityMetadata,
   convertDocs,
   createAdvancedCache,
+  createAdvancedPluginLoader,
+  createAdvancedPluginRegistry,
   createAgentCompletionRule,
   createAgentId,
   createBackupManager,
@@ -180,45 +248,77 @@ export {
   createCacheCheck,
   createChunker,
   createClaudeFlowIntegration,
+  createCodeComplexityAnalyzerPlugin,
+  createComplexityPlugin,
   createConditionalRule,
   createConfigManager,
   createConfigurationError,
+  createContextFactory,
   createDatabase,
   createDatabaseCheck,
   createDecisionTracker,
   createDeepAnalyzer,
+  createDefaultConfig,
+  createDefaultPluginManager,
+  createDefaultPluginMetadata,
+  createDependencyGraphGenerator,
+  createDependencyHealthAnalyzer,
+  createDependencyHealthAnalyzerPlugin,
+  createDependencyHealthPlugin,
   createDiskCheck,
   createErrorResult,
   createFileChangeLogRule,
+  createGraphQLServer,
   createGraphUpdateNotificationRule,
   createHealthMonitor,
   createIntegrityChecker,
   createKnowledgeGraph,
+  createLocalConfig,
   createLogger,
   createMCPServer,
   createMemoryCheck,
   createMessageId,
   createMultiLayerGraph,
+  createNodeTypeFilter,
+  createNpmClient,
+  createPluginId,
+  createPluginLoader,
+  createPluginManager,
+  createPluginRegistry,
+  createPostgresConfig,
   createProgressLogger,
   createRegistry,
   createResourceError,
   createRule,
   createRulesEngine,
   createSOPFocusedSubgraph,
+  createServerManager,
+  createServiceContainer,
   createServiceManager,
   createShadowCache,
+  createSharedServices,
+  createSourceFilter,
+  createSubscriptionIterator,
   createSuccessResult,
   createTask,
   createTaskId,
+  createTypedEventBus,
   createValidationError,
   createVaultMemorySync,
+  createVercelConfig,
+  createVulnerabilityChecker,
+  createWorkflowConfig,
   createWorkflowRegistry,
+  customScalars,
+  defaultConfig as defaultWorkflowConfig,
   docsExist,
+  enhanceDependenciesWithHealth,
   exportToVisualizationFormat,
   filterByComplianceStatus,
   filterByLayer,
   generateAndSave,
   generateClaudeMd,
+  generateComplexityNodes,
   generateGraph,
   generateMcpConfig,
   getAllSOPs,
@@ -236,6 +336,8 @@ export {
   getSOPsByCategory,
   getSOPsRequiringIRB,
   getSectionTemplate,
+  getServiceContainer,
+  getSharedServices,
   getSopCount,
   getToolCategories,
   getToolDefinition,
@@ -243,15 +345,22 @@ export {
   getToolHandler,
   handleError,
   handleToolCall,
+  hasScope,
+  hasServiceContainer,
   initDocs,
   initPrimitives,
   initializeTools,
   isAgentError,
   isAgentResult,
+  isAnalysisResult,
+  isAnalyzerPlugin,
+  isGraphQLContext,
   isPermanentError,
+  isPluginManifest,
   isRateLimitError,
   isRetryableError,
   isTransientError,
+  isValidSemver,
   listSectionTemplates,
   loadShadowCache,
   meetsMinimumCompliance,
@@ -259,17 +368,23 @@ export {
   quickInit,
   registerDefaultAgents,
   registerTool,
+  registerWithSeedGenerator,
+  requireAuth,
+  requireScope,
   retry,
   retryable,
   runServer,
+  scalarTypeDefs,
   searchSOPs,
   setDefaultLogger,
   setDefaultRegistry,
+  shutdownServiceContainer,
   sleep,
   toggleLayerVisibility,
   updateClaudeMd,
   updateGraph,
   validateFrontmatter,
+  validateWorkflowConfig,
   withCircuitBreaker,
   withFallback,
   withRetry

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sources":["../src/index.ts"],"sourcesContent":["/**\n * Knowledge Graph Agent\n *\n * NPM library for creating and managing knowledge graphs for Claude Code.\n *\n * @packageDocumentation\n */\n\n// Internal imports for quickInit\nimport { createDatabase as _createDatabase } from './core/database.js';\nimport { initDocs as _initDocs, docsExist as _docsExist } from './generators/docs-init.js';\nimport { generateAndSave as _generateAndSave } from './generators/graph-generator.js';\nimport { updateClaudeMd as _updateClaudeMd } from './generators/claude-md.js';\n\n// Core exports\nexport {\n  KnowledgeGraphManager,\n  createKnowledgeGraph,\n} from './core/graph.js';\n\nexport {\n  KnowledgeGraphDatabase,\n  createDatabase,\n} from './core/database.js';\n\n// Cache exports\nexport {\n  ShadowCache,\n  createShadowCache,\n  loadShadowCache,\n} from './core/cache.js';\n\nexport type {\n  FileMetadata,\n  FileType,\n  ChangeType,\n  FileChange,\n  CacheStats,\n  ShadowCacheOptions,\n} from './core/cache.js';\n\nexport type {\n  // Node types\n  NodeType,\n  NodeStatus,\n  NodeLink,\n  NodeFrontmatter,\n  KnowledgeNode,\n\n  // Graph types\n  GraphEdge,\n  GraphMetadata,\n  GraphStats,\n  KnowledgeGraph,\n\n  // Configuration\n  KGConfig,\n  ConfigSchema,\n\n  // Generator types\n  GeneratorOptions,\n  GeneratedDocument,\n  DocsInitOptions,\n  DocsInitResult,\n\n  // Integration types\n  MemoryEntry,\n  SyncResult,\n\n  // CLAUDE.md types\n  ClaudeMdSection,\n  ClaudeMdTemplate,\n  ClaudeMdGeneratorOptions,\n} from './core/types.js';\n\n// Generator exports\nexport {\n  generateGraph,\n  generateAndSave,\n  updateGraph,\n} from './generators/graph-generator.js';\n\nexport {\n  initDocs,\n  docsExist,\n  getDocsPath,\n} from './generators/docs-init.js';\n\nexport {\n  generateClaudeMd,\n  updateClaudeMd,\n  addSection,\n  getSectionTemplate,\n  listSectionTemplates,\n} from './generators/claude-md.js';\n\n// Conversion exports\nexport {\n  convertDocs,\n  addFrontmatter,\n  validateFrontmatter,\n} from './generators/docs-convert.js';\n\nexport type {\n  ConvertOptions,\n  ConvertResult,\n  FrontmatterOptions,\n  FrontmatterResult,\n} from './generators/docs-convert.js';\n\n// Analyzer exports\nexport {\n  analyzeDocs,\n} from './generators/docs-analyzer.js';\n\nexport type {\n  AnalyzerOptions,\n  AnalyzedDoc,\n  AnalyzerResult,\n} from './generators/docs-analyzer.js';\n\n// Integration exports\nexport {\n  ClaudeFlowIntegration,\n  createClaudeFlowIntegration,\n  generateMcpConfig,\n} from './integrations/claude-flow.js';\n\n// CLI export\nexport { createCLI } from './cli/index.js';\n\n// Agents exports\nexport {\n  // Agent system core\n  AgentType,\n  AgentStatus,\n  TaskPriority,\n  MessageType,\n  createMessageId,\n  createTaskId,\n  createAgentId,\n\n  // Registry\n  AgentRegistry,\n  getRegistry,\n  createRegistry,\n  setDefaultRegistry,\n  registerDefaultAgents,\n\n  // Base Agent\n  BaseAgent,\n  createTask,\n  isAgentResult,\n  isAgentError,\n\n  // Specialized Agents\n  ResearcherAgent,\n  CoderAgent,\n  TesterAgent,\n  AnalystAgent,\n  ArchitectAgent,\n\n  // Rules Engine\n  RulesEngine,\n  createRulesEngine,\n  createRule,\n  createConditionalRule,\n  createFileChangeLogRule,\n  createGraphUpdateNotificationRule,\n  createAgentCompletionRule,\n} from './agents/index.js';\n\nexport type {\n  // Agent types\n  AgentConfig,\n  ResearcherAgentConfig,\n  CoderAgentConfig,\n  TesterAgentConfig,\n  AnalystAgentConfig,\n  ArchitectAgentConfig,\n  SpecializedAgentConfig,\n  TaskInput,\n  AgentTask,\n  AgentResult as AgentSystemResult,\n  AgentError,\n  ExecutionMetrics,\n  ResultArtifact,\n  AgentMessage,\n  TaskRequestMessage,\n  TaskResponseMessage,\n  StatusMessage,\n  ErrorMessage,\n  CoordinationMessage,\n  AgentMessageUnion,\n  AgentState,\n  AgentFactory,\n  AgentInstance,\n  AgentCapability,\n  AgentHealthCheck,\n  RegistryOptions,\n  SpawnOptions,\n\n  // Rules Engine types\n  RuleTrigger,\n  RulePriority,\n  RuleExecutionStatus,\n  RuleContext,\n  RuleCondition,\n  RuleAction,\n  AgentRule,\n  RuleExecutionLog,\n  RuleStatistics,\n  EngineStatistics,\n  RulesEngineConfig,\n} from './agents/index.js';\n\n// Cultivation exports\nexport {\n  SeedGenerator,\n  analyzeSeed,\n  initPrimitives,\n  DeepAnalyzer,\n  createDeepAnalyzer,\n  analyzeDeep,\n} from './cultivation/index.js';\n\nexport type {\n  VaultContext,\n  Ecosystem,\n  DependencyType,\n  ServiceType,\n  DependencyInfo,\n  ServiceInfo,\n  SeedAnalysis,\n  DocumentMetadata as CultivationDocumentMetadata,\n  GeneratedDocument as CultivationGeneratedDocument,\n  CultivationReport,\n  CultivationOptions,\n  GapAnalysis as CultivationGapAnalysis,\n  InitPrimitivesResult,\n  DeepAnalyzerOptions,\n  AgentResult,\n  DeepAnalysisResult,\n} from './cultivation/index.js';\n\n// SOP exports\nexport {\n  // Enums\n  SOPCategory,\n  ComplianceStatus,\n  SOPPriority,\n  IRBStatus,\n  GraphLayer,\n  // Registry\n  getSOPById,\n  getSOPsByCategory,\n  getSOPsRequiringIRB,\n  searchSOPs,\n  getAllSOPs,\n  getSopCount,\n  getCategories,\n  // Compliance\n  checkCompliance,\n  checkSOPCompliance,\n  meetsMinimumCompliance,\n  // Gap Analysis\n  analyzeGaps,\n  getGapsForSOP,\n  getQuickWins,\n  calculateProgress,\n  // Overlay Management\n  createMultiLayerGraph,\n  addProjectLayer,\n  addComplianceOverlay,\n  filterByLayer,\n  filterByComplianceStatus,\n  getComplianceSummary,\n  getGapNodes,\n  toggleLayerVisibility,\n  exportToVisualizationFormat,\n  createSOPFocusedSubgraph,\n} from './sops/index.js';\n\nexport type {\n  // SOP types\n  SOPRequirement,\n  SOPCheckpoint,\n  SOPDefinition,\n  SOPAssessment,\n  ComplianceGap,\n  LayerDefinition,\n  LayerNode,\n  LayerEdge,\n  MultiLayerGraph,\n  ComplianceReport,\n  SOPFrontmatter,\n  SOPConfig,\n  // Compliance types\n  ComplianceCheckOptions,\n  ComplianceCheckResult,\n  EvidenceItem,\n  // Gap types\n  GapAnalysisOptions,\n  GapAnalysisResult,\n  GapSummary,\n  RemediationRoadmap,\n  RemediationPhase,\n  GapDependency,\n  // Overlay types\n  OverlayManagerOptions,\n  NodeStyleConfig,\n} from './sops/index.js';\n\n// Workflows exports\nexport {\n  WorkflowStatus,\n  WorkflowRegistry,\n  createWorkflowRegistry,\n} from './workflows/index.js';\n\nexport type {\n  StepContext,\n  StepHandler,\n  RollbackHandler,\n  WorkflowStep,\n  WorkflowDefinition,\n  StepExecution,\n  WorkflowExecution,\n  WorkflowResult,\n  WorkflowExecutionStats,\n  WorkflowRegistryOptions,\n  WorkflowListOptions,\n  ExecutionHistoryOptions,\n  WorkflowEventType,\n  WorkflowEvent,\n  WorkflowEventListener,\n} from './workflows/index.js';\n\n// Memory exports\nexport {\n  VaultMemorySync,\n  createVaultMemorySync,\n} from './memory/index.js';\n\nexport type {\n  SyncDirection,\n  ConflictStrategy,\n  SyncStatus,\n  MemoryNode,\n  SyncConflict,\n  VaultSyncOptions,\n  SyncOperationResult,\n  FullSyncResult,\n} from './memory/index.js';\n\n// Utils exports\nexport {\n  // Error Taxonomy\n  ErrorCategory,\n  ErrorSeverity,\n  classifyError,\n  isRetryableError,\n  isTransientError,\n  isRateLimitError,\n  isPermanentError,\n  KnowledgeGraphError,\n  createValidationError,\n  createConfigurationError,\n  createResourceError,\n  // Error Recovery\n  withRetry,\n  retry,\n  withFallback,\n  withCircuitBreaker,\n  retryable,\n  calculateBackoff,\n  sleep,\n  CircuitBreaker,\n  CircuitState,\n  RetriesExhaustedError,\n  CircuitOpenError,\n  // Logger\n  Logger,\n  LogLevel,\n  getLogger,\n  createLogger,\n  setDefaultLogger,\n  parseLogLevel,\n  createProgressLogger,\n} from './utils/index.js';\n\nexport type {\n  ClassifiedError,\n  RetryOptions,\n  RetryResult,\n  FallbackOptions,\n  CircuitBreakerOptions,\n  LoggerOptions,\n  LogEntry,\n  ProgressLogger,\n} from './utils/index.js';\n\n// MCP Server exports\nexport {\n  KnowledgeGraphMCPServer,\n  createMCPServer,\n  runServer,\n  initializeTools,\n  registerTool,\n  getToolHandler,\n  getToolDefinition,\n  getToolDefinitions,\n  getToolCategories,\n  handleToolCall,\n  handleError,\n  createErrorResult,\n  createSuccessResult,\n} from './mcp-server/index.js';\n\nexport type {\n  MCPServerConfig,\n  ServerHealth,\n  ToolCategory,\n  ToolHandler,\n  ToolHandlerEntry,\n  ToolResult,\n  ToolContext,\n  ToolInputSchema,\n  ToolDefinition,\n  GraphQueryParams,\n  GraphNodeResult,\n  AgentInvokeParams,\n  AgentResult as MCPAgentResult,\n  WorkflowParams,\n  WorkflowResult as MCPWorkflowResult,\n  MemoryParams,\n  MemoryResult,\n} from './mcp-server/index.js';\n\n// Services exports\nexport {\n  ServiceManager,\n  createServiceManager,\n  FileWatcherService,\n} from './services/index.js';\n\nexport type {\n  ServiceStatus,\n  ServiceType as ManagerServiceType,\n  ServiceConfig,\n  ServiceState,\n  ServiceMetrics,\n  ServiceHandler,\n} from './services/index.js';\n\n// Config exports\nexport {\n  ConfigManager,\n  createConfigManager,\n  getDefaultConfig,\n} from './config/index.js';\n\nexport type {\n  KGConfiguration,\n  DatabaseConfig,\n  CacheConfig,\n  AgentConfig as ConfigAgentConfig,\n  ServicesConfig,\n  LoggingConfig,\n  ConfigMigration,\n} from './config/index.js';\n\n// Health exports\nexport {\n  HealthMonitor,\n  createHealthMonitor,\n  createDatabaseCheck,\n  createCacheCheck,\n  createMemoryCheck,\n  createDiskCheck,\n} from './health/index.js';\n\nexport type {\n  HealthStatus,\n  ComponentHealth,\n  SystemHealth,\n  MemoryMetrics,\n  PerformanceMetrics,\n  HealthCheck,\n  HealthMonitorConfig,\n} from './health/index.js';\n\n// Chunking exports\nexport {\n  Chunker,\n  createChunker,\n  chunkDocument,\n} from './chunking/index.js';\n\nexport type {\n  ChunkStrategy,\n  ChunkOptions,\n  Chunk,\n  ChunkMetadata,\n  ChunkResult,\n} from './chunking/index.js';\n\n// Recovery exports\nexport {\n  BackupManager,\n  createBackupManager,\n  IntegrityChecker,\n  createIntegrityChecker,\n  checkDatabaseIntegrity,\n} from './recovery/index.js';\n\nexport type {\n  BackupConfig,\n  BackupInfo,\n  RestoreResult,\n  RecoveryOptions,\n  IntegrityCheckResult,\n  TableIntegrity,\n} from './recovery/index.js';\n\n// Advanced Caching exports\nexport {\n  AdvancedCache,\n  createAdvancedCache,\n} from './caching/index.js';\n\nexport type {\n  EvictionPolicy,\n  CacheEntry,\n  CacheConfig as AdvancedCacheConfig,\n  CacheStats as AdvancedCacheStats,\n} from './caching/index.js';\n\n// Reasoning exports\nexport {\n  DecisionTracker,\n  createDecisionTracker,\n  getDecisionTracker,\n} from './reasoning/index.js';\n\nexport type {\n  DecisionType,\n  ConfidenceLevel,\n  Decision,\n  DecisionContext,\n  Alternative,\n  DecisionOutcome,\n  ReasoningChain,\n} from './reasoning/index.js';\n\n/**\n * Quick start function for programmatic usage\n *\n * @example\n * ```typescript\n * import { quickInit } from '@weave-nn/knowledge-graph-agent';\n *\n * await quickInit({\n *   projectRoot: '/path/to/project',\n *   docsPath: 'docs',\n * });\n * ```\n */\nexport async function quickInit(options: {\n  projectRoot: string;\n  docsPath?: string;\n  generateGraph?: boolean;\n  updateClaudeMd?: boolean;\n}): Promise<{\n  success: boolean;\n  docsCreated: boolean;\n  graphGenerated: boolean;\n  claudeMdUpdated: boolean;\n  errors: string[];\n}> {\n  const {\n    projectRoot,\n    docsPath = 'docs',\n    generateGraph: genGraph = true,\n    updateClaudeMd: updateClaude = true,\n  } = options;\n\n  const result = {\n    success: true,\n    docsCreated: false,\n    graphGenerated: false,\n    claudeMdUpdated: false,\n    errors: [] as string[],\n  };\n\n  try {\n    // Initialize docs if needed\n    const { existsSync, mkdirSync, writeFileSync } = await import('fs');\n    const { join } = await import('path');\n\n    // Create .kg directory\n    const kgDir = join(projectRoot, '.kg');\n    if (!existsSync(kgDir)) {\n      mkdirSync(kgDir, { recursive: true });\n    }\n\n    // Initialize database\n    const dbPath = join(kgDir, 'knowledge.db');\n    const db = _createDatabase(dbPath);\n    db.setMetadata('initialized', new Date().toISOString());\n\n    // Initialize docs\n    if (!_docsExist(projectRoot, docsPath)) {\n      const docsResult = await _initDocs({\n        projectRoot,\n        docsPath,\n        includeExamples: true,\n        detectFramework: true,\n      });\n      result.docsCreated = docsResult.success;\n      if (!docsResult.success) {\n        result.errors.push(...docsResult.errors);\n      }\n    }\n\n    // Generate graph\n    if (genGraph && _docsExist(projectRoot, docsPath)) {\n      const graphResult = await _generateAndSave(\n        {\n          projectRoot,\n          outputPath: join(projectRoot, docsPath),\n        },\n        dbPath\n      );\n      result.graphGenerated = graphResult.success;\n      if (!graphResult.success) {\n        result.errors.push(...graphResult.stats.errors);\n      }\n    }\n\n    // Update CLAUDE.md\n    if (updateClaude) {\n      const claudeResult = await _updateClaudeMd({\n        projectRoot,\n        includeKnowledgeGraph: true,\n        includeClaudeFlow: true,\n      });\n      result.claudeMdUpdated = claudeResult.created || claudeResult.updated;\n    }\n\n    db.close();\n    result.success = result.errors.length === 0;\n\n  } catch (error) {\n    result.success = false;\n    result.errors.push(String(error));\n  }\n\n  return 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+{"version":3,"file":"index.js","sources":["../src/index.ts"],"sourcesContent":["/**\n * Knowledge Graph Agent\n *\n * NPM library for creating and managing knowledge graphs for Claude Code.\n *\n * @packageDocumentation\n */\n\n// Internal imports for quickInit\nimport { createDatabase as _createDatabase } from './core/database.js';\nimport { initDocs as _initDocs, docsExist as _docsExist } from './generators/docs-init.js';\nimport { generateAndSave as _generateAndSave } from './generators/graph-generator.js';\nimport { updateClaudeMd as _updateClaudeMd } from './generators/claude-md.js';\n\n// ============================================================================\n// Core\n// ============================================================================\n\nexport {\n  KnowledgeGraphManager,\n  createKnowledgeGraph,\n} from './core/graph.js';\n\nexport {\n  KnowledgeGraphDatabase,\n  createDatabase,\n} from './core/database.js';\n\n// Cache exports\nexport {\n  ShadowCache,\n  createShadowCache,\n  loadShadowCache,\n} from './core/cache.js';\n\nexport type {\n  FileMetadata,\n  FileType,\n  ChangeType,\n  FileChange,\n  CacheStats,\n  ShadowCacheOptions,\n} from './core/cache.js';\n\nexport type {\n  // Node types\n  NodeType,\n  NodeStatus,\n  NodeLink,\n  NodeFrontmatter,\n  KnowledgeNode,\n\n  // Graph types\n  GraphEdge,\n  GraphMetadata,\n  GraphStats,\n  KnowledgeGraph,\n\n  // Configuration\n  KGConfig,\n  ConfigSchema,\n\n  // Generator types\n  GeneratorOptions,\n  GeneratedDocument,\n  DocsInitOptions,\n  DocsInitResult,\n\n  // Integration types\n  MemoryEntry,\n  SyncResult,\n\n  // CLAUDE.md types\n  ClaudeMdSection,\n  ClaudeMdTemplate,\n  ClaudeMdGeneratorOptions,\n} from './core/types.js';\n\n// ============================================================================\n// Generators\n// ============================================================================\n\nexport {\n  generateGraph,\n  generateAndSave,\n  updateGraph,\n} from './generators/graph-generator.js';\n\nexport {\n  initDocs,\n  docsExist,\n  getDocsPath,\n} from './generators/docs-init.js';\n\nexport {\n  generateClaudeMd,\n  updateClaudeMd,\n  addSection,\n  getSectionTemplate,\n  listSectionTemplates,\n} from './generators/claude-md.js';\n\n// Conversion exports\nexport {\n  convertDocs,\n  addFrontmatter,\n  validateFrontmatter,\n} from './generators/docs-convert.js';\n\nexport type {\n  ConvertOptions,\n  ConvertResult,\n  FrontmatterOptions,\n  FrontmatterResult,\n} from './generators/docs-convert.js';\n\n// Analyzer exports\nexport {\n  analyzeDocs,\n} from './generators/docs-analyzer.js';\n\nexport type {\n  AnalyzerOptions,\n  AnalyzedDoc,\n  AnalyzerResult,\n} from './generators/docs-analyzer.js';\n\n// ============================================================================\n// Integrations\n// ============================================================================\n\nexport {\n  ClaudeFlowIntegration,\n  createClaudeFlowIntegration,\n  generateMcpConfig,\n} from './integrations/claude-flow.js';\n\n// ============================================================================\n// CLI\n// ============================================================================\n\nexport { createCLI } from './cli/index.js';\n\n// ============================================================================\n// Agents\n// ============================================================================\n\nexport {\n  // Agent system core\n  AgentType,\n  AgentStatus,\n  TaskPriority,\n  MessageType,\n  createMessageId,\n  createTaskId,\n  createAgentId,\n\n  // Registry\n  AgentRegistry,\n  getRegistry,\n  createRegistry,\n  setDefaultRegistry,\n  registerDefaultAgents,\n\n  // Base Agent\n  BaseAgent,\n  createTask,\n  isAgentResult,\n  isAgentError,\n\n  // Specialized Agents\n  ResearcherAgent,\n  CoderAgent,\n  TesterAgent,\n  AnalystAgent,\n  ArchitectAgent,\n\n  // Rules Engine\n  RulesEngine,\n  createRulesEngine,\n  createRule,\n  createConditionalRule,\n  createFileChangeLogRule,\n  createGraphUpdateNotificationRule,\n  createAgentCompletionRule,\n} from './agents/index.js';\n\nexport type {\n  // Agent types\n  AgentConfig,\n  ResearcherAgentConfig,\n  CoderAgentConfig,\n  TesterAgentConfig,\n  AnalystAgentConfig,\n  ArchitectAgentConfig,\n  SpecializedAgentConfig,\n  TaskInput,\n  AgentTask,\n  AgentResult as AgentSystemResult,\n  AgentError,\n  ExecutionMetrics,\n  ResultArtifact,\n  AgentMessage,\n  TaskRequestMessage,\n  TaskResponseMessage,\n  StatusMessage,\n  ErrorMessage,\n  CoordinationMessage,\n  AgentMessageUnion,\n  AgentState,\n  AgentFactory,\n  AgentInstance,\n  AgentCapability,\n  AgentHealthCheck,\n  RegistryOptions,\n  SpawnOptions,\n\n  // Rules Engine types\n  RuleTrigger,\n  RulePriority,\n  RuleExecutionStatus,\n  RuleContext,\n  RuleCondition,\n  RuleAction,\n  AgentRule,\n  RuleExecutionLog,\n  RuleStatistics,\n  EngineStatistics,\n  RulesEngineConfig,\n} from './agents/index.js';\n\n// ============================================================================\n// Cultivation\n// ============================================================================\n\nexport {\n  SeedGenerator,\n  analyzeSeed,\n  initPrimitives,\n  DeepAnalyzer,\n  createDeepAnalyzer,\n  analyzeDeep,\n} from './cultivation/index.js';\n\nexport type {\n  VaultContext,\n  Ecosystem,\n  DependencyType,\n  ServiceType,\n  DependencyInfo,\n  ServiceInfo,\n  SeedAnalysis,\n  DocumentMetadata as CultivationDocumentMetadata,\n  GeneratedDocument as CultivationGeneratedDocument,\n  CultivationReport,\n  CultivationOptions,\n  GapAnalysis as CultivationGapAnalysis,\n  InitPrimitivesResult,\n  DeepAnalyzerOptions,\n  AgentResult,\n  DeepAnalysisResult,\n} from './cultivation/index.js';\n\n// ============================================================================\n// SOPs\n// ============================================================================\n\nexport {\n  // Enums\n  SOPCategory,\n  ComplianceStatus,\n  SOPPriority,\n  IRBStatus,\n  GraphLayer,\n  // Registry\n  getSOPById,\n  getSOPsByCategory,\n  getSOPsRequiringIRB,\n  searchSOPs,\n  getAllSOPs,\n  getSopCount,\n  getCategories,\n  // Compliance\n  checkCompliance,\n  checkSOPCompliance,\n  meetsMinimumCompliance,\n  // Gap Analysis\n  analyzeGaps,\n  getGapsForSOP,\n  getQuickWins,\n  calculateProgress,\n  // Overlay Management\n  createMultiLayerGraph,\n  addProjectLayer,\n  addComplianceOverlay,\n  filterByLayer,\n  filterByComplianceStatus,\n  getComplianceSummary,\n  getGapNodes,\n  toggleLayerVisibility,\n  exportToVisualizationFormat,\n  createSOPFocusedSubgraph,\n} from './sops/index.js';\n\nexport type {\n  // SOP types\n  SOPRequirement,\n  SOPCheckpoint,\n  SOPDefinition,\n  SOPAssessment,\n  ComplianceGap,\n  LayerDefinition,\n  LayerNode,\n  LayerEdge,\n  MultiLayerGraph,\n  ComplianceReport,\n  SOPFrontmatter,\n  SOPConfig,\n  // Compliance types\n  ComplianceCheckOptions,\n  ComplianceCheckResult,\n  EvidenceItem,\n  // Gap types\n  GapAnalysisOptions,\n  GapAnalysisResult,\n  GapSummary,\n  RemediationRoadmap,\n  RemediationPhase,\n  GapDependency,\n  // Overlay types\n  OverlayManagerOptions,\n  NodeStyleConfig,\n} from './sops/index.js';\n\n// ============================================================================\n// Workflows\n// ============================================================================\n\nexport {\n  WorkflowStatus,\n  WorkflowRegistry,\n  createWorkflowRegistry,\n} from './workflows/index.js';\n\nexport type {\n  StepContext,\n  StepHandler,\n  RollbackHandler,\n  WorkflowStep,\n  WorkflowDefinition,\n  StepExecution,\n  WorkflowExecution,\n  WorkflowResult,\n  WorkflowExecutionStats,\n  WorkflowRegistryOptions,\n  WorkflowListOptions,\n  ExecutionHistoryOptions,\n  WorkflowEventType,\n  WorkflowEvent,\n  WorkflowEventListener,\n} from './workflows/index.js';\n\n// ============================================================================\n// Memory\n// ============================================================================\n\nexport {\n  VaultMemorySync,\n  createVaultMemorySync,\n} from './memory/index.js';\n\nexport type {\n  SyncDirection,\n  ConflictStrategy,\n  SyncStatus,\n  MemoryNode,\n  SyncConflict,\n  VaultSyncOptions,\n  SyncOperationResult,\n  FullSyncResult,\n} from './memory/index.js';\n\n// ============================================================================\n// Utils\n// ============================================================================\n\nexport {\n  // Error Taxonomy\n  ErrorCategory,\n  ErrorSeverity,\n  classifyError,\n  isRetryableError,\n  isTransientError,\n  isRateLimitError,\n  isPermanentError,\n  KnowledgeGraphError,\n  createValidationError,\n  createConfigurationError,\n  createResourceError,\n  // Error Recovery\n  withRetry,\n  retry,\n  withFallback,\n  withCircuitBreaker,\n  retryable,\n  calculateBackoff,\n  sleep,\n  CircuitBreaker,\n  CircuitState,\n  RetriesExhaustedError,\n  CircuitOpenError,\n  // Logger\n  Logger,\n  LogLevel,\n  getLogger,\n  createLogger,\n  setDefaultLogger,\n  parseLogLevel,\n  createProgressLogger,\n} from './utils/index.js';\n\nexport type {\n  ClassifiedError,\n  RetryOptions,\n  RetryResult,\n  FallbackOptions,\n  CircuitBreakerOptions,\n  LoggerOptions,\n  LogEntry,\n  ProgressLogger,\n} from './utils/index.js';\n\n// ============================================================================\n// MCP Server\n// ============================================================================\n\nexport {\n  KnowledgeGraphMCPServer,\n  createMCPServer,\n  runServer,\n  initializeTools,\n  registerTool,\n  getToolHandler,\n  getToolDefinition,\n  getToolDefinitions,\n  getToolCategories,\n  handleToolCall,\n  handleError,\n  createErrorResult,\n  createSuccessResult,\n} from './mcp-server/index.js';\n\nexport type {\n  MCPServerConfig,\n  ServerHealth,\n  ToolCategory,\n  ToolHandler,\n  ToolHandlerEntry,\n  ToolResult,\n  ToolContext,\n  ToolInputSchema,\n  ToolDefinition,\n  GraphQueryParams,\n  GraphNodeResult,\n  AgentInvokeParams,\n  AgentResult as MCPAgentResult,\n  WorkflowParams,\n  WorkflowResult as MCPWorkflowResult,\n  MemoryParams,\n  MemoryResult,\n} from './mcp-server/index.js';\n\n// ============================================================================\n// Server Infrastructure\n// ============================================================================\n\nexport {\n  // Server Manager\n  ServerManager,\n  createServerManager,\n\n  // Shared Services\n  SharedServices,\n  createSharedServices,\n  getSharedServices,\n  createDefaultConfig,\n\n  // Service Container\n  ServiceContainer,\n  createServiceContainer,\n  getServiceContainer,\n  hasServiceContainer,\n  shutdownServiceContainer,\n\n  // TypedEventBus\n  TypedEventBus,\n  createTypedEventBus,\n  createSubscriptionIterator,\n  createNodeTypeFilter,\n  createSourceFilter,\n\n  // Constants\n  DEFAULT_GRAPHQL_PORT,\n  DEFAULT_DASHBOARD_PORT,\n  DEFAULT_DATABASE_PATH,\n  SHUTDOWN_TIMEOUT,\n  HEALTH_CHECK_INTERVAL,\n} from './server/index.js';\n\nexport type {\n  // Configuration types\n  ServerConfig,\n  MCPServerConfig as ServerMCPConfig,\n  GraphQLServerConfig,\n  DashboardServerConfig,\n  DatabaseServerConfig,\n  CacheServerConfig,\n\n  // State types\n  ServerStatus,\n  ServerState,\n  ServerManagerState,\n\n  // Health types\n  ComponentHealth as ServerComponentHealth,\n  HealthStatus as ServerHealthStatus,\n\n  // Event types\n  ServerEventType,\n  ServerEvent,\n  ServerEventListener,\n\n  // Instance types\n  HTTPServerInstance,\n  MCPServerInstance,\n\n  // CLI types\n  ServeCommandOptions,\n  ParsedServeOptions,\n\n  // Interface types\n  ISharedServices,\n  IServerManager,\n\n  // Service Container types\n  ServiceInitState,\n  ServiceDependency,\n  ContainerConfig,\n  ContainerEventType,\n\n  // TypedEventBus types\n  EventType as ServerEventTypeEnum,\n  EventDataMap,\n  EventEntry,\n  EventFilter,\n  EventHandler as ServerEventHandler,\n  Unsubscribe,\n  NodeEventData,\n  RelationEventData,\n  AgentEventData,\n  WorkflowEventData,\n  PluginEventData,\n  HealthEventData,\n  CacheEvictionData,\n  EventTypeMetrics,\n  EventBusMetrics,\n  ITypedEventBus,\n  TypedEventBusOptions,\n} from './server/index.js';\n\n// ============================================================================\n// GraphQL\n// ============================================================================\n\nexport {\n  // Server\n  createGraphQLServer,\n\n  // Context\n  createContextFactory,\n  hasScope,\n  requireAuth,\n  requireScope,\n  isGraphQLContext,\n\n  // Scalars\n  DateTimeScalar,\n  JSONScalar,\n  UUIDScalar,\n  FilePathScalar,\n  customScalars,\n  scalarTypeDefs,\n} from './graphql/index.js';\n\nexport type {\n  // Server types\n  GraphQLServerConfig as GraphQLServerOptions,\n  GraphQLServerInstance,\n  CorsConfig,\n  HealthCheckResponse as GraphQLHealthCheckResponse,\n\n  // Context types\n  GraphQLContext,\n  AuthResult,\n  RequestMeta,\n  RequestUtils,\n  Services as GraphQLServices,\n  ContextFactoryConfig,\n} from './graphql/index.js';\n\n// ============================================================================\n// Services\n// ============================================================================\n\nexport {\n  ServiceManager,\n  createServiceManager,\n  FileWatcherService,\n} from './services/index.js';\n\nexport type {\n  ServiceStatus,\n  ServiceType as ManagerServiceType,\n  ServiceConfig,\n  ServiceState,\n  ServiceMetrics,\n  ServiceHandler,\n} from './services/index.js';\n\n// ============================================================================\n// Config\n// ============================================================================\n\nexport {\n  ConfigManager,\n  createConfigManager,\n  getDefaultConfig,\n} from './config/index.js';\n\nexport type {\n  KGConfiguration,\n  DatabaseConfig,\n  CacheConfig,\n  AgentConfig as ConfigAgentConfig,\n  ServicesConfig,\n  LoggingConfig,\n  ConfigMigration,\n} from './config/index.js';\n\n// ============================================================================\n// Health\n// ============================================================================\n\nexport {\n  HealthMonitor,\n  createHealthMonitor,\n  createDatabaseCheck,\n  createCacheCheck,\n  createMemoryCheck,\n  createDiskCheck,\n} from './health/index.js';\n\nexport type {\n  HealthStatus,\n  ComponentHealth,\n  SystemHealth,\n  MemoryMetrics,\n  PerformanceMetrics,\n  HealthCheck,\n  HealthMonitorConfig,\n} from './health/index.js';\n\n// ============================================================================\n// Chunking\n// ============================================================================\n\nexport {\n  Chunker,\n  createChunker,\n  chunkDocument,\n} from './chunking/index.js';\n\nexport type {\n  ChunkStrategy,\n  ChunkOptions,\n  Chunk,\n  ChunkMetadata,\n  ChunkResult,\n} from './chunking/index.js';\n\n// ============================================================================\n// Recovery\n// ============================================================================\n\nexport {\n  BackupManager,\n  createBackupManager,\n  IntegrityChecker,\n  createIntegrityChecker,\n  checkDatabaseIntegrity,\n} from './recovery/index.js';\n\nexport type {\n  BackupConfig,\n  BackupInfo,\n  RestoreResult,\n  RecoveryOptions,\n  IntegrityCheckResult,\n  TableIntegrity,\n} from './recovery/index.js';\n\n// ============================================================================\n// Advanced Caching\n// ============================================================================\n\nexport {\n  AdvancedCache,\n  createAdvancedCache,\n} from './caching/index.js';\n\nexport type {\n  EvictionPolicy,\n  CacheEntry,\n  CacheConfig as AdvancedCacheConfig,\n  CacheStats as AdvancedCacheStats,\n} from './caching/index.js';\n\n// ============================================================================\n// Reasoning\n// ============================================================================\n\nexport {\n  DecisionTracker,\n  createDecisionTracker,\n  getDecisionTracker,\n} from './reasoning/index.js';\n\nexport type {\n  DecisionType,\n  ConfidenceLevel,\n  Decision,\n  DecisionContext,\n  Alternative,\n  DecisionOutcome,\n  ReasoningChain,\n} from './reasoning/index.js';\n\n// ============================================================================\n// Workflow DevKit\n// ============================================================================\n\nexport {\n  createWorkflowConfig,\n  validateWorkflowConfig,\n  createPostgresConfig,\n  createVercelConfig,\n  createLocalConfig,\n  defaultConfig as defaultWorkflowConfig,\n} from './workflow/index.js';\n\nexport type {\n  // Configuration types\n  WorkflowConfig as WorkflowDevKitConfig,\n  PostgresPoolConfig,\n  PostgresWorldConfig,\n  VercelWorldConfig,\n  LocalWorldConfig,\n  // World state types\n  WorldState,\n  // Event types\n  NodeUpdateEvent,\n  GapDetectedEvent,\n  WorkflowCompleteEvent,\n  WorkflowRunMetadata as DevKitRunMetadata,\n  // Task types\n  TaskSpec,\n  DocumentGap,\n  GapAnalysis as DevKitGapAnalysis,\n  // GOAP types\n  GOAPAction,\n  GOAPGoal,\n  GOAPPlanStep,\n  GOAPPlan,\n  GOAPPlanExtended,\n  PlanExecutionResult,\n  ReadinessEvaluation,\n  // Execution types\n  WorkflowExecutionOptions as DevKitExecutionOptions,\n  WorkflowExecutionResult as DevKitExecutionResult,\n  // Hook types\n  HookHandler,\n  HookRegistration,\n} from './workflow/index.js';\n\n// ============================================================================\n// Plugins\n// ============================================================================\n\n// Plugin System - Core exports (includes types, manager, analyzers)\n// This re-exports everything from plugins/index.js including:\n// - Types: PluginType, PluginHook, PluginStatus, PluginCapability, PluginDependency,\n//          PluginConfigSchema, KGPluginManifest, PluginMetadata, KGPlugin, AnalyzerPlugin,\n//          PluginContext, PluginAPI, PluginCommand, PluginEventEmitter, PluginLoader,\n//          PluginRegistry, PluginManager, PluginManagerConfig, DiscoveredPlugin,\n//          PluginLoadOptions, PluginLoadResult, PluginRegistryEvents, AnalysisInput,\n//          AnalysisResult, AnalysisStreamChunk, PluginFactory, PluginConstructor,\n//          PluginModuleExport, PluginConfigType\n// - Manager: PluginManagerImpl, PluginRegistryImpl, PluginLoaderImpl,\n//            createPluginManager, createPluginRegistry, createPluginLoader,\n//            createDefaultPluginManager\n// - Analyzers: CodeComplexityPlugin, DependencyHealthPlugin, and related exports\nexport * from './plugins/index.js';\n\n// ============================================================================\n// Quick Start\n// ============================================================================\n\n/**\n * Quick start function for programmatic usage\n *\n * @example\n * ```typescript\n * import { quickInit } from '@weave-nn/knowledge-graph-agent';\n *\n * await quickInit({\n *   projectRoot: '/path/to/project',\n *   docsPath: 'docs',\n * });\n * ```\n */\nexport async function quickInit(options: {\n  projectRoot: string;\n  docsPath?: string;\n  generateGraph?: boolean;\n  updateClaudeMd?: boolean;\n}): Promise<{\n  success: boolean;\n  docsCreated: boolean;\n  graphGenerated: boolean;\n  claudeMdUpdated: boolean;\n  errors: string[];\n}> {\n  const {\n    projectRoot,\n    docsPath = 'docs',\n    generateGraph: genGraph = true,\n    updateClaudeMd: updateClaude = true,\n  } = options;\n\n  const result = {\n    success: true,\n    docsCreated: false,\n    graphGenerated: false,\n    claudeMdUpdated: false,\n    errors: [] as string[],\n  };\n\n  try {\n    // Initialize docs if needed\n    const { existsSync, mkdirSync, writeFileSync } = await import('fs');\n    const { join } = await import('path');\n\n    // Create .kg directory\n    const kgDir = join(projectRoot, '.kg');\n    if (!existsSync(kgDir)) {\n      mkdirSync(kgDir, { recursive: true });\n    }\n\n    // Initialize database\n    const dbPath = join(kgDir, 'knowledge.db');\n    const db = _createDatabase(dbPath);\n    db.setMetadata('initialized', new Date().toISOString());\n\n    // Initialize docs\n    if (!_docsExist(projectRoot, docsPath)) {\n      const docsResult = await _initDocs({\n        projectRoot,\n        docsPath,\n        includeExamples: true,\n        detectFramework: true,\n      });\n      result.docsCreated = docsResult.success;\n      if (!docsResult.success) {\n        result.errors.push(...docsResult.errors);\n      }\n    }\n\n    // Generate graph\n    if (genGraph && _docsExist(projectRoot, docsPath)) {\n      const graphResult = await _generateAndSave(\n        {\n          projectRoot,\n          outputPath: join(projectRoot, docsPath),\n        },\n        dbPath\n      );\n      result.graphGenerated = graphResult.success;\n      if (!graphResult.success) {\n        result.errors.push(...graphResult.stats.errors);\n      }\n    }\n\n    // Update CLAUDE.md\n    if (updateClaude) {\n      const claudeResult = await _updateClaudeMd({\n        projectRoot,\n        includeKnowledgeGraph: true,\n        includeClaudeFlow: true,\n      });\n      result.claudeMdUpdated = claudeResult.created || claudeResult.updated;\n    }\n\n    db.close();\n    result.success = result.errors.length === 0;\n\n  } catch (error) {\n    result.success = false;\n    result.errors.push(String(error));\n  }\n\n  return 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package/dist/mcp-server/handlers/index.js

@@ -1,4 +1,4 @@
-import { McpError, ErrorCode } from "../../node_modules/@modelcontextprotocol/sdk/dist/esm/types.js";
+import { McpError, ErrorCode } from "@modelcontextprotocol/sdk/types.js";
 import { createLogger } from "../../utils/logger.js";
 import { getToolHandler } from "../tools/registry.js";
 const logger = createLogger("mcp-handler");

package/dist/mcp-server/server.js

@@ -1,6 +1,6 @@
-import { Server } from "../node_modules/@modelcontextprotocol/sdk/dist/esm/server/index.js";
+import { Server } from "@modelcontextprotocol/sdk/server/index.js";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
-import { McpError, ErrorCode, ListToolsRequestSchema, CallToolRequestSchema } from "../node_modules/@modelcontextprotocol/sdk/dist/esm/types.js";
+import { McpError, ErrorCode, ListToolsRequestSchema, CallToolRequestSchema } from "@modelcontextprotocol/sdk/types.js";
 import { createLogger } from "../utils/logger.js";
 import { getToolDefinitions, initializeTools, getToolCount } from "./tools/registry.js";
 import { handleToolCall } from "./handlers/index.js";

package/dist/mcp-server/tools/audit/checkpoint.d.ts

@@ -0,0 +1,58 @@
+/**
+ * Audit Checkpoint Tool
+ *
+ * MCP tool for creating checkpoints in the audit chain.
+ * Checkpoints provide periodic state snapshots for efficient
+ * verification and sync recovery.
+ *
+ * @module mcp-server/tools/audit/checkpoint
+ */
+import type { Tool } from '@modelcontextprotocol/sdk/types.js';
+import type { ToolHandler } from '../../types/index.js';
+import type { AuditChain } from '../../../audit/services/audit-chain.js';
+/**
+ * Audit checkpoint tool definition
+ *
+ * Creates a checkpoint in the audit chain with optional
+ * name and tags for identification.
+ */
+export declare const auditCheckpointTool: Tool;
+/**
+ * Parameters for the audit checkpoint tool
+ */
+export interface AuditCheckpointParams {
+    /** Optional checkpoint name */
+    name?: string;
+    /** Optional tags for the checkpoint */
+    tags?: string[];
+}
+/**
+ * Create audit checkpoint handler
+ *
+ * Factory function that creates a tool handler for checkpoint creation.
+ *
+ * @param auditChain - The audit chain instance
+ * @returns Tool handler function
+ *
+ * @example
+ * ```typescript
+ * const auditChain = createAuditChain({ agentDid: 'did:exo:agent-1' });
+ * const handler = createAuditCheckpointHandler(auditChain);
+ *
+ * const result = await handler({
+ *   name: 'pre-migration',
+ *   tags: ['migration', 'backup']
+ * });
+ * ```
+ */
+export declare function createAuditCheckpointHandler(auditChain?: AuditChain): ToolHandler;
+/**
+ * Get the latest checkpoint from the audit chain
+ *
+ * Utility function to retrieve the most recent checkpoint.
+ *
+ * @param auditChain - The audit chain instance
+ * @returns The latest checkpoint or null if none exist
+ */
+export declare function getLatestCheckpoint(auditChain: AuditChain): import("../../../audit/types.js").Checkpoint | null;
+//# sourceMappingURL=checkpoint.d.ts.map

package/dist/mcp-server/tools/audit/checkpoint.d.ts.map

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package/dist/mcp-server/tools/audit/checkpoint.js

@@ -0,0 +1,73 @@
+const auditCheckpointTool = {
+  name: "kg_audit_checkpoint",
+  description: "Create a checkpoint in the audit chain. Checkpoints provide periodic state snapshots for efficient verification and sync recovery points.",
+  inputSchema: {
+    type: "object",
+    properties: {
+      name: {
+        type: "string",
+        description: "Optional name for the checkpoint (for reference purposes)"
+      },
+      tags: {
+        type: "array",
+        description: "Optional tags for categorizing the checkpoint",
+        items: {
+          type: "string"
+        }
+      }
+    }
+  }
+};
+function createAuditCheckpointHandler(auditChain) {
+  return async (params) => {
+    const startTime = Date.now();
+    const { name, tags } = params;
+    try {
+      if (!auditChain) {
+        return {
+          success: false,
+          error: "Audit chain not initialized. The exochain audit system is not available.",
+          metadata: { executionTime: Date.now() - startTime }
+        };
+      }
+      const statsBefore = auditChain.getStats();
+      const previousCheckpoint = auditChain.getLatestCheckpoint();
+      const checkpoint = await auditChain.createCheckpoint();
+      const statsAfter = auditChain.getStats();
+      const checkpointData = {
+        height: checkpoint.height,
+        eventRoot: checkpoint.eventRoot,
+        stateRoot: checkpoint.stateRoot,
+        timestamp: checkpoint.timestamp.toISOString(),
+        validatorCount: checkpoint.validatorSignatures.length,
+        metadata: {
+          name: name || null,
+          tags: tags || []
+        },
+        stats: {
+          totalEventsAtCheckpoint: statsAfter.totalEvents,
+          eventsSincePreviousCheckpoint: previousCheckpoint ? statsAfter.totalEvents - statsBefore.totalEvents : statsAfter.totalEvents,
+          previousCheckpointHeight: previousCheckpoint?.height ?? null
+        }
+      };
+      return {
+        success: true,
+        data: checkpointData,
+        metadata: {
+          executionTime: Date.now() - startTime
+        }
+      };
+    } catch (error) {
+      return {
+        success: false,
+        error: error instanceof Error ? error.message : String(error),
+        metadata: { executionTime: Date.now() - startTime }
+      };
+    }
+  };
+}
+export {
+  auditCheckpointTool,
+  createAuditCheckpointHandler
+};
+//# sourceMappingURL=checkpoint.js.map

package/dist/mcp-server/tools/audit/checkpoint.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"checkpoint.js","sources":["../../../../src/mcp-server/tools/audit/checkpoint.ts"],"sourcesContent":["/**\n * Audit Checkpoint Tool\n *\n * MCP tool for creating checkpoints in the audit chain.\n * Checkpoints provide periodic state snapshots for efficient\n * verification and sync recovery.\n *\n * @module mcp-server/tools/audit/checkpoint\n */\n\nimport type { Tool } from '@modelcontextprotocol/sdk/types.js';\nimport type { ToolHandler, ToolResult } from '../../types/index.js';\nimport type { AuditChain } from '../../../audit/services/audit-chain.js';\n\n/**\n * Audit checkpoint tool definition\n *\n * Creates a checkpoint in the audit chain with optional\n * name and tags for identification.\n */\nexport const auditCheckpointTool: Tool = {\n  name: 'kg_audit_checkpoint',\n  description: 'Create a checkpoint in the audit chain. 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package/dist/mcp-server/tools/audit/index.d.ts

@@ -0,0 +1,53 @@
+/**
+ * Audit Tools
+ *
+ * MCP tools for the exochain audit system, providing:
+ * - Event querying with filtering
+ * - Checkpoint creation for state snapshots
+ * - Sync status monitoring for peer environments
+ *
+ * @module mcp-server/tools/audit
+ */
+export { auditQueryTool, createAuditQueryHandler, type AuditQueryParams, } from './query.js';
+export { auditCheckpointTool, createAuditCheckpointHandler, getLatestCheckpoint, type AuditCheckpointParams, } from './checkpoint.js';
+export { syncStatusTool, createSyncStatusHandler, triggerManualSync, type SyncStatusParams, } from './sync.js';
+/**
+ * All audit tool definitions for registration
+ */
+export declare const auditToolDefinitions: {
+    inputSchema: {
+        [x: string]: unknown;
+        type: "object";
+        properties?: {
+            [x: string]: object;
+        } | undefined;
+        required?: string[] | undefined;
+    };
+    name: string;
+    description?: string | undefined;
+    outputSchema?: {
+        [x: string]: unknown;
+        type: "object";
+        properties?: {
+            [x: string]: object;
+        } | undefined;
+        required?: string[] | undefined;
+    } | undefined;
+    annotations?: {
+        title?: string | undefined;
+        readOnlyHint?: boolean | undefined;
+        destructiveHint?: boolean | undefined;
+        idempotentHint?: boolean | undefined;
+        openWorldHint?: boolean | undefined;
+    } | undefined;
+    _meta?: {
+        [x: string]: unknown;
+    } | undefined;
+    icons?: {
+        src: string;
+        mimeType?: string | undefined;
+        sizes?: string[] | undefined;
+    }[] | undefined;
+    title?: string | undefined;
+}[];
+//# sourceMappingURL=index.d.ts.map

package/dist/mcp-server/tools/audit/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/mcp-server/tools/audit/index.js

@@ -0,0 +1,12 @@
+import { auditQueryTool, createAuditQueryHandler } from "./query.js";
+import { auditCheckpointTool, createAuditCheckpointHandler } from "./checkpoint.js";
+import { createSyncStatusHandler, syncStatusTool } from "./sync.js";
+export {
+  auditCheckpointTool,
+  auditQueryTool,
+  createAuditCheckpointHandler,
+  createAuditQueryHandler,
+  createSyncStatusHandler,
+  syncStatusTool
+};
+//# sourceMappingURL=index.js.map

package/dist/mcp-server/tools/audit/index.js.map

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