@weavelogic/knowledge-graph-agent 0.2.0 → 0.4.0

package/dist/cultivation/seed-generator.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"seed-generator.js","sources":["../../src/cultivation/seed-generator.ts"],"sourcesContent":["/**\n * Seed Generator - Bootstrap knowledge graph with primitive nodes from codebase analysis\n *\n * Analyzes:\n * - package.json (Node.js dependencies)\n * - composer.json (PHP dependencies)\n * - requirements.txt / pyproject.toml (Python)\n * - Cargo.toml (Rust)\n * - go.mod (Go)\n * - pom.xml / build.gradle (Java)\n * - Existing vault documents\n * - Service configurations\n * - Deployment manifests\n *\n * @module cultivation/seed-generator\n */\n\nimport { readFile, readdir, stat, mkdir, writeFile } from 'fs/promises';\nimport { existsSync } from 'fs';\nimport { join, extname, basename, dirname } from 'path';\nimport matter from 'gray-matter';\nimport { createLogger } from '../utils/logger.js';\nimport type {\n  VaultContext,\n  DependencyInfo,\n  ServiceInfo,\n  SeedAnalysis,\n  GeneratedDocument,\n  DocumentMetadata,\n  Ecosystem,\n  DependencyType,\n  ServiceType,\n  CultivationOptions,\n  InitPrimitivesResult\n} from './types.js';\n\nconst logger = createLogger('seed-generator');\n\n/**\n * SeedGenerator class for analyzing codebases and generating primitive nodes\n */\nexport class SeedGenerator {\n  private vaultContext: VaultContext;\n  private projectRoot: string;\n  private startTime: number = 0;\n  private filesScanned: number = 0;\n\n  constructor(vaultContext: VaultContext, projectRoot: string) {\n    this.vaultContext = vaultContext;\n    this.projectRoot = projectRoot;\n  }\n\n  /**\n   * Create a SeedGenerator from project paths\n   */\n  static async create(projectRoot: string, docsPath: string): Promise<SeedGenerator> {\n    const vaultRoot = join(projectRoot, docsPath);\n    const allFiles = await SeedGenerator.collectVaultFiles(vaultRoot);\n\n    // Load context files if they exist\n    let primitives: string | undefined;\n    let features: string | undefined;\n    let techSpecs: string | undefined;\n\n    try {\n      primitives = await readFile(join(vaultRoot, 'PRIMITIVES.md'), 'utf-8');\n    } catch { /* File doesn't exist */ }\n\n    try {\n      features = await readFile(join(vaultRoot, 'features.md'), 'utf-8');\n    } catch { /* File doesn't exist */ }\n\n    try {\n      techSpecs = await readFile(join(vaultRoot, 'tech-specs.md'), 'utf-8');\n    } catch { /* File doesn't exist */ }\n\n    const vaultContext: VaultContext = {\n      vaultRoot,\n      allFiles,\n      primitives,\n      features,\n      techSpecs\n    };\n\n    return new SeedGenerator(vaultContext, projectRoot);\n  }\n\n  /**\n   * Collect all markdown files in vault\n   */\n  private static async collectVaultFiles(vaultRoot: string): Promise<string[]> {\n    const files: string[] = [];\n\n    async function walk(dir: string): Promise<void> {\n      try {\n        const entries = await readdir(dir, { withFileTypes: true });\n        for (const entry of entries) {\n          const fullPath = join(dir, entry.name);\n          if (entry.isDirectory() && !entry.name.startsWith('.')) {\n            await walk(fullPath);\n          } else if (entry.isFile() && entry.name.endsWith('.md')) {\n            files.push(fullPath);\n          }\n        }\n      } catch {\n        // Directory doesn't exist\n      }\n    }\n\n    await walk(vaultRoot);\n    return files;\n  }\n\n  /**\n   * Analyze entire codebase and generate seed data\n   */\n  async analyze(): Promise<SeedAnalysis> {\n    this.startTime = Date.now();\n    this.filesScanned = 0;\n\n    logger.info('Starting codebase analysis', { projectRoot: this.projectRoot });\n\n    const analysis: SeedAnalysis = {\n      dependencies: [],\n      services: [],\n      frameworks: [],\n      languages: [],\n      deployments: [],\n      existingConcepts: [],\n      existingFeatures: [],\n      metadata: {\n        analyzedAt: new Date().toISOString(),\n        projectRoot: this.projectRoot,\n        filesScanned: 0,\n        duration: 0\n      }\n    };\n\n    // Analyze dependency files\n    await this.analyzeDependencies(analysis);\n\n    // Analyze existing vault documents\n    await this.analyzeVaultDocuments(analysis);\n\n    // Analyze service configurations\n    await this.analyzeServices(analysis);\n\n    // Analyze deployment manifests\n    await this.analyzeDeployments(analysis);\n\n    // Classify dependencies into frameworks\n    this.classifyDependencies(analysis);\n\n    // Dedupe languages\n    analysis.languages = [...new Set(analysis.languages)];\n\n    // Update metadata\n    analysis.metadata.filesScanned = this.filesScanned;\n    analysis.metadata.duration = Date.now() - this.startTime;\n\n    logger.info('Analysis complete', {\n      dependencies: analysis.dependencies.length,\n      frameworks: analysis.frameworks.length,\n      services: analysis.services.length,\n      languages: analysis.languages.length,\n      duration: analysis.metadata.duration\n    });\n\n    return analysis;\n  }\n\n  /**\n   * Generate primitive nodes from seed analysis\n   */\n  async generatePrimitives(analysis: SeedAnalysis): Promise<GeneratedDocument[]> {\n    const documents: GeneratedDocument[] = [];\n    const frameworkNames = new Set(analysis.frameworks.map(f => f.name.toLowerCase()));\n\n    logger.info('Generating primitives', {\n      frameworks: analysis.frameworks.length,\n      dependencies: analysis.dependencies.length,\n      services: analysis.services.length\n    });\n\n    // Generate nodes for frameworks\n    for (const framework of analysis.frameworks) {\n      const doc = this.generateFrameworkNode(framework, analysis);\n      documents.push(doc);\n    }\n\n    // Generate nodes for major dependencies (skip frameworks to avoid duplicates)\n    for (const dep of analysis.dependencies) {\n      if (frameworkNames.has(dep.name.toLowerCase())) {\n        continue;\n      }\n      if (this.shouldGenerateNode(dep)) {\n        const doc = this.generateDependencyNode(dep, analysis);\n        documents.push(doc);\n      }\n    }\n\n    // Generate nodes for services\n    for (const service of analysis.services) {\n      const doc = this.generateServiceNode(service, analysis);\n      documents.push(doc);\n    }\n\n    // Generate language nodes\n    for (const language of analysis.languages) {\n      const doc = this.generateLanguageNode(language, analysis);\n      documents.push(doc);\n    }\n\n    logger.info('Generated primitives', { count: documents.length });\n    return documents;\n  }\n\n  /**\n   * Write generated documents to disk\n   */\n  async writePrimitives(documents: GeneratedDocument[]): Promise<InitPrimitivesResult> {\n    const result: InitPrimitivesResult = {\n      success: true,\n      analysis: {\n        dependencies: [],\n        services: [],\n        frameworks: [],\n        languages: [],\n        deployments: [],\n        existingConcepts: [],\n        existingFeatures: [],\n        metadata: {\n          analyzedAt: new Date().toISOString(),\n          projectRoot: this.projectRoot,\n          filesScanned: 0,\n          duration: 0\n        }\n      },\n      documentsGenerated: [],\n      directoriesCreated: [],\n      errors: [],\n      warnings: []\n    };\n\n    const createdDirs = new Set<string>();\n\n    for (const doc of documents) {\n      try {\n        // Ensure directory exists\n        const dir = dirname(doc.path);\n        if (!createdDirs.has(dir) && !existsSync(dir)) {\n          await mkdir(dir, { recursive: true });\n          createdDirs.add(dir);\n          result.directoriesCreated.push(dir);\n        }\n\n        // Check if file already exists\n        if (existsSync(doc.path)) {\n          result.warnings.push(`File already exists, skipping: ${doc.path}`);\n          continue;\n        }\n\n        // Write file with frontmatter\n        const frontmatterStr = matter.stringify(doc.content, doc.frontmatter);\n        await writeFile(doc.path, frontmatterStr, 'utf-8');\n        result.documentsGenerated.push(doc);\n\n        logger.debug('Created primitive', { path: doc.path, title: doc.title });\n      } catch (error) {\n        const errorMsg = `Failed to write ${doc.path}: ${String(error)}`;\n        result.errors.push(errorMsg);\n        logger.error(errorMsg);\n      }\n    }\n\n    result.success = result.errors.length === 0;\n    return result;\n  }\n\n  /**\n   * Full init-primitives workflow\n   */\n  async initPrimitives(options?: CultivationOptions): Promise<InitPrimitivesResult> {\n    const analysis = await this.analyze();\n    const documents = await this.generatePrimitives(analysis);\n\n    if (options?.dryRun) {\n      return {\n        success: true,\n        analysis,\n        documentsGenerated: documents,\n        directoriesCreated: [],\n        errors: [],\n        warnings: ['Dry run - no files written']\n      };\n    }\n\n    const result = await this.writePrimitives(documents);\n    result.analysis = analysis;\n    return result;\n  }\n\n  // ============================================================================\n  // Dependency Analysis Methods\n  // ============================================================================\n\n  private async analyzeDependencies(analysis: SeedAnalysis): Promise<void> {\n    await this.analyzePackageJson(analysis);\n    await this.analyzePython(analysis);\n    await this.analyzeComposer(analysis);\n    await this.analyzeCargo(analysis);\n    await this.analyzeGoMod(analysis);\n    await this.analyzeJava(analysis);\n  }\n\n  private async analyzePackageJson(analysis: SeedAnalysis): Promise<void> {\n    const packageJsonPaths = [\n      join(this.projectRoot, 'package.json'),\n      join(this.projectRoot, 'packages/*/package.json')\n    ];\n\n    for (const path of [packageJsonPaths[0]]) {\n      try {\n        const content = await readFile(path, 'utf-8');\n        const pkg = JSON.parse(content);\n        this.filesScanned++;\n\n        if (!analysis.languages.includes('javascript')) {\n          analysis.languages.push('javascript');\n        }\n        if (pkg.devDependencies?.typescript || pkg.dependencies?.typescript) {\n          if (!analysis.languages.includes('typescript')) {\n            analysis.languages.push('typescript');\n          }\n        }\n\n        // Process dependencies\n        for (const [name, version] of Object.entries(pkg.dependencies || {})) {\n          const dep = this.createDependencyInfo(name, version as string, 'nodejs', false);\n          analysis.dependencies.push(dep);\n        }\n\n        // Process devDependencies\n        for (const [name, version] of Object.entries(pkg.devDependencies || {})) {\n          const dep = this.createDependencyInfo(name, version as string, 'nodejs', true);\n          analysis.dependencies.push(dep);\n        }\n      } catch {\n        // File doesn't exist\n      }\n    }\n\n    // Check for monorepo packages\n    try {\n      const packagesDir = join(this.projectRoot, 'packages');\n      const entries = await readdir(packagesDir, { withFileTypes: true });\n\n      for (const entry of entries) {\n        if (entry.isDirectory()) {\n          const pkgPath = join(packagesDir, entry.name, 'package.json');\n          try {\n            const content = await readFile(pkgPath, 'utf-8');\n            const pkg = JSON.parse(content);\n            this.filesScanned++;\n\n            for (const [name, version] of Object.entries(pkg.dependencies || {})) {\n              // Avoid duplicates\n              if (!analysis.dependencies.some(d => d.name === name && d.ecosystem === 'nodejs')) {\n                const dep = this.createDependencyInfo(name, version as string, 'nodejs', false);\n                analysis.dependencies.push(dep);\n              }\n            }\n          } catch {\n            // Package doesn't have package.json\n          }\n        }\n      }\n    } catch {\n      // No packages directory\n    }\n  }\n\n  private async analyzePython(analysis: SeedAnalysis): Promise<void> {\n    const requirementsPaths = [\n      join(this.projectRoot, 'requirements.txt'),\n      join(this.projectRoot, 'requirements-dev.txt')\n    ];\n\n    for (const path of requirementsPaths) {\n      try {\n        const content = await readFile(path, 'utf-8');\n        const isDev = path.includes('dev');\n        this.filesScanned++;\n\n        if (!analysis.languages.includes('python')) {\n          analysis.languages.push('python');\n        }\n\n        for (const line of content.split('\\n')) {\n          const trimmed = line.trim();\n          if (!trimmed || trimmed.startsWith('#')) continue;\n\n          const match = trimmed.match(/^([a-zA-Z0-9-_]+)(?:==|>=|<=|~=|>|<)?(.+)?$/);\n          if (match) {\n            const [, name, version] = match;\n            const dep = this.createDependencyInfo(name, version?.trim() || 'latest', 'python', isDev);\n            analysis.dependencies.push(dep);\n          }\n        }\n      } catch {\n        // File doesn't exist\n      }\n    }\n\n    // pyproject.toml\n    try {\n      const content = await readFile(join(this.projectRoot, 'pyproject.toml'), 'utf-8');\n      this.filesScanned++;\n\n      const depMatch = content.match(/\\[tool\\.poetry\\.dependencies\\]([\\s\\S]*?)(?=\\[|$)/);\n      if (depMatch) {\n        for (const line of depMatch[1].split('\\n')) {\n          const match = line.match(/^([a-zA-Z0-9-_]+)\\s*=\\s*\"([^\"]+)\"/);\n          if (match) {\n            const [, name, version] = match;\n            if (name !== 'python') {\n              const dep = this.createDependencyInfo(name, version, 'python', false);\n              analysis.dependencies.push(dep);\n            }\n          }\n        }\n      }\n    } catch {\n      // File doesn't exist\n    }\n  }\n\n  private async analyzeComposer(analysis: SeedAnalysis): Promise<void> {\n    try {\n      const content = await readFile(join(this.projectRoot, 'composer.json'), 'utf-8');\n      const composer = JSON.parse(content);\n      this.filesScanned++;\n\n      if (!analysis.languages.includes('php')) {\n        analysis.languages.push('php');\n      }\n\n      for (const [name, version] of Object.entries(composer.require || {})) {\n        if (name === 'php') continue;\n        const dep = this.createDependencyInfo(name, version as string, 'php', false);\n        analysis.dependencies.push(dep);\n      }\n\n      for (const [name, version] of Object.entries(composer['require-dev'] || {})) {\n        const dep = this.createDependencyInfo(name, version as string, 'php', true);\n        analysis.dependencies.push(dep);\n      }\n    } catch {\n      // File doesn't exist\n    }\n  }\n\n  private async analyzeCargo(analysis: SeedAnalysis): Promise<void> {\n    try {\n      const content = await readFile(join(this.projectRoot, 'Cargo.toml'), 'utf-8');\n      this.filesScanned++;\n\n      if (!analysis.languages.includes('rust')) {\n        analysis.languages.push('rust');\n      }\n\n      const depMatch = content.match(/\\[dependencies\\]([\\s\\S]*?)(?=\\[|$)/);\n      if (depMatch) {\n        for (const line of depMatch[1].split('\\n')) {\n          const match = line.match(/^([a-zA-Z0-9-_]+)\\s*=\\s*\"([^\"]+)\"/);\n          if (match) {\n            const [, name, version] = match;\n            const dep = this.createDependencyInfo(name, version, 'rust', false);\n            dep.repository = `https://crates.io/crates/${name}`;\n            analysis.dependencies.push(dep);\n          }\n        }\n      }\n    } catch {\n      // File doesn't exist\n    }\n  }\n\n  private async analyzeGoMod(analysis: SeedAnalysis): Promise<void> {\n    try {\n      const content = await readFile(join(this.projectRoot, 'go.mod'), 'utf-8');\n      this.filesScanned++;\n\n      if (!analysis.languages.includes('go')) {\n        analysis.languages.push('go');\n      }\n\n      let inRequire = false;\n      for (const line of content.split('\\n')) {\n        if (line.trim() === 'require (') {\n          inRequire = true;\n          continue;\n        }\n        if (line.trim() === ')') {\n          inRequire = false;\n          continue;\n        }\n\n        if (inRequire || line.trim().startsWith('require ')) {\n          const match = line.match(/([a-zA-Z0-9.-]+\\/[a-zA-Z0-9.-/]+)\\s+v([0-9.]+)/);\n          if (match) {\n            const [, name, version] = match;\n            const dep = this.createDependencyInfo(name, version, 'go', false);\n            dep.documentation = [`https://pkg.go.dev/${name}`];\n            dep.repository = `https://${name}`;\n            analysis.dependencies.push(dep);\n          }\n        }\n      }\n    } catch {\n      // File doesn't exist\n    }\n  }\n\n  private async analyzeJava(analysis: SeedAnalysis): Promise<void> {\n    try {\n      const content = await readFile(join(this.projectRoot, 'pom.xml'), 'utf-8');\n      this.filesScanned++;\n\n      if (!analysis.languages.includes('java')) {\n        analysis.languages.push('java');\n      }\n\n      const depMatches = content.matchAll(\n        /<dependency>[\\s\\S]*?<groupId>([^<]+)<\\/groupId>[\\s\\S]*?<artifactId>([^<]+)<\\/artifactId>[\\s\\S]*?(?:<version>([^<]+)<\\/version>)?[\\s\\S]*?<\\/dependency>/g\n      );\n\n      for (const match of depMatches) {\n        const [, groupId, artifactId, version] = match;\n        const name = `${groupId}:${artifactId}`;\n        const dep = this.createDependencyInfo(name, version || 'latest', 'java', false);\n        dep.documentation = [`https://mvnrepository.com/artifact/${groupId}/${artifactId}`];\n        analysis.dependencies.push(dep);\n      }\n    } catch {\n      // File doesn't exist\n    }\n\n    // build.gradle (basic support)\n    try {\n      const content = await readFile(join(this.projectRoot, 'build.gradle'), 'utf-8');\n      this.filesScanned++;\n\n      if (!analysis.languages.includes('java')) {\n        analysis.languages.push('java');\n      }\n    } catch {\n      // File doesn't exist\n    }\n  }\n\n  private createDependencyInfo(name: string, version: string, ecosystem: Ecosystem, isDev: boolean): DependencyInfo {\n    return {\n      name,\n      version,\n      type: this.inferDependencyType(name),\n      category: this.inferCategory(name),\n      ecosystem,\n      documentation: this.getDocumentationLinks(name, ecosystem),\n      repository: this.getRepositoryUrl(name, ecosystem),\n      usedBy: [],\n      relatedTo: [],\n      isDev\n    };\n  }\n\n  // ============================================================================\n  // Vault Document Analysis\n  // ============================================================================\n\n  private async analyzeVaultDocuments(analysis: SeedAnalysis): Promise<void> {\n    for (const filePath of this.vaultContext.allFiles) {\n      try {\n        const content = await readFile(filePath, 'utf-8');\n        const { data } = matter(content);\n        this.filesScanned++;\n\n        if (data.type === 'concept') {\n          analysis.existingConcepts.push(data.title || basename(filePath, '.md'));\n        } else if (data.type === 'feature') {\n          analysis.existingFeatures.push(data.title || basename(filePath, '.md'));\n        }\n\n        // Extract mentions of dependencies\n        const contentLower = content.toLowerCase();\n        for (const dep of analysis.dependencies) {\n          if (contentLower.includes(dep.name.toLowerCase())) {\n            dep.usedBy.push(data.title || basename(filePath, '.md'));\n          }\n        }\n      } catch {\n        // Skip files that can't be read\n      }\n    }\n  }\n\n  // ============================================================================\n  // Service Analysis\n  // ============================================================================\n\n  private async analyzeServices(analysis: SeedAnalysis): Promise<void> {\n    const serviceFiles = [\n      'docker-compose.yml',\n      'docker-compose.yaml',\n      'compose.yml',\n      'compose.yaml'\n    ];\n\n    for (const file of serviceFiles) {\n      try {\n        const content = await readFile(join(this.projectRoot, file), 'utf-8');\n        this.filesScanned++;\n\n        // Simple line-by-line parsing for docker-compose\n        const lines = content.split('\\n');\n        let inServices = false;\n        let currentService: string | null = null;\n        let currentIndent = 0;\n        const serviceData = new Map<string, { image?: string; ports: string[] }>();\n\n        for (const line of lines) {\n          // Check for services section\n          if (line.match(/^services:\\s*$/)) {\n            inServices = true;\n            continue;\n          }\n\n          // Check for end of services section (new top-level key)\n          if (inServices && line.match(/^[a-zA-Z]+:\\s*$/)) {\n            inServices = false;\n            currentService = null;\n            continue;\n          }\n\n          if (!inServices) continue;\n\n          // Detect service name (2-space indent, ends with colon)\n          const serviceMatch = line.match(/^  ([a-zA-Z0-9-_]+):\\s*$/);\n          if (serviceMatch) {\n            currentService = serviceMatch[1];\n            if (!['volumes', 'networks', 'secrets', 'configs'].includes(currentService)) {\n              serviceData.set(currentService, { ports: [] });\n            } else {\n              currentService = null;\n            }\n            continue;\n          }\n\n          // Extract properties for current service (4+ space indent)\n          if (currentService && serviceData.has(currentService)) {\n            const data = serviceData.get(currentService)!;\n\n            const imageMatch = line.match(/^\\s+image:\\s*(.+)$/);\n            if (imageMatch) {\n              data.image = imageMatch[1].trim();\n            }\n\n            const portMatch = line.match(/^\\s+-\\s*[\"']?(\\d+)(?::\\d+)?[\"']?/);\n            if (portMatch) {\n              data.ports.push(portMatch[1]);\n            }\n          }\n        }\n\n        // Convert to ServiceInfo objects\n        for (const [name, data] of serviceData.entries()) {\n          const service: ServiceInfo = {\n            name,\n            type: this.inferServiceType(name, data.image),\n            technology: data.image?.split(':')[0] || 'unknown',\n            dependencies: [],\n            ports: data.ports.map(p => parseInt(p, 10))\n          };\n          analysis.services.push(service);\n        }\n      } catch {\n        // File doesn't exist\n      }\n    }\n  }\n\n  private extractPorts(portsSection?: string): number[] {\n    if (!portsSection) return [];\n    const ports: number[] = [];\n    const matches = portsSection.matchAll(/(\\d+)(?::\\d+)?/g);\n    for (const match of matches) {\n      ports.push(parseInt(match[1], 10));\n    }\n    return ports;\n  }\n\n  // ============================================================================\n  // Deployment Analysis\n  // ============================================================================\n\n  private async analyzeDeployments(analysis: SeedAnalysis): Promise<void> {\n    const deploymentIndicators = [\n      'Dockerfile',\n      'docker-compose.yml',\n      '.github/workflows',\n      'vercel.json',\n      'netlify.toml',\n      'railway.json',\n      'fly.toml',\n      'render.yaml',\n      'kubernetes',\n      'k8s'\n    ];\n\n    for (const indicator of deploymentIndicators) {\n      try {\n        await stat(join(this.projectRoot, indicator));\n        analysis.deployments.push(indicator);\n      } catch {\n        // Doesn't exist\n      }\n    }\n  }\n\n  // ============================================================================\n  // Classification Methods\n  // ============================================================================\n\n  private classifyDependencies(analysis: SeedAnalysis): void {\n    const frameworkKeywords = [\n      'express', 'fastify', 'koa', 'hapi', 'nest',\n      'react', 'vue', 'angular', 'svelte', 'solid',\n      'next', 'nuxt', 'gatsby', 'remix', 'astro',\n      'django', 'flask', 'fastapi', 'rails', 'laravel',\n      'spring', 'quarkus', 'micronaut',\n      'actix', 'rocket', 'axum',\n      'gin', 'echo', 'fiber'\n    ];\n\n    for (const dep of analysis.dependencies) {\n      const nameLower = dep.name.toLowerCase();\n      if (frameworkKeywords.some(fw => nameLower.includes(fw))) {\n        dep.type = 'framework';\n        if (!analysis.frameworks.some(f => f.name === dep.name)) {\n          analysis.frameworks.push(dep);\n        }\n      }\n    }\n  }\n\n  private inferDependencyType(name: string): DependencyType {\n    const nameLower = name.toLowerCase();\n\n    if (nameLower.includes('eslint') || nameLower.includes('prettier') ||\n        nameLower.includes('webpack') || nameLower.includes('vite') ||\n        nameLower.includes('rollup') || nameLower.includes('esbuild')) {\n      return 'tool';\n    }\n\n    return 'library';\n  }\n\n  private inferCategory(name: string): string {\n    const nameLower = name.toLowerCase();\n\n    // Frontend frameworks & UI → components/ui\n    if (['react', 'vue', 'angular', 'svelte', 'solid'].some(fw => nameLower.includes(fw))) {\n      return 'components/ui';\n    }\n    if (['radix', 'shadcn', 'chakra', 'mui', 'antd'].some(ui => nameLower.includes(ui))) {\n      return 'components/ui';\n    }\n\n    // Backend frameworks → services/api\n    if (['express', 'fastapi', 'django', 'flask', 'next', 'fastify', 'koa', 'hapi'].some(fw => nameLower.includes(fw))) {\n      return 'services/api';\n    }\n\n    // Database/ORM → integrations/databases\n    if (['prisma', 'typeorm', 'sequelize', 'mongoose', 'pg', 'mysql', 'sqlite', 'drizzle'].some(db => nameLower.includes(db))) {\n      return 'integrations/databases';\n    }\n\n    // Auth → integrations/auth-providers\n    if (['auth', 'passport', 'jwt', 'oauth', 'clerk', 'auth0', 'nextauth'].some(auth => nameLower.includes(auth))) {\n      return 'integrations/auth-providers';\n    }\n\n    // Testing → guides/testing\n    if (['test', 'jest', 'mocha', 'vitest', 'cypress', 'playwright'].some(test => nameLower.includes(test))) {\n      return 'guides/testing';\n    }\n\n    // Build tools → standards/build-tools\n    if (['webpack', 'vite', 'rollup', 'esbuild', 'turbo', 'nx'].some(tool => nameLower.includes(tool))) {\n      return 'standards/build-tools';\n    }\n\n    // Linters → standards/coding-standards\n    if (['eslint', 'prettier', 'stylelint', 'biome'].some(lint => nameLower.includes(lint))) {\n      return 'standards/coding-standards';\n    }\n\n    // Type definitions → components/utilities\n    if (nameLower.includes('@types') || nameLower.includes('typescript')) {\n      return 'components/utilities';\n    }\n\n    // Default\n    return 'components/utilities';\n  }\n\n  private getDocumentationLinks(name: string, ecosystem: Ecosystem): string[] {\n    const links: string[] = [];\n\n    switch (ecosystem) {\n      case 'nodejs':\n        links.push(`https://www.npmjs.com/package/${name}`);\n        break;\n      case 'python':\n        links.push(`https://pypi.org/project/${name}/`);\n        break;\n      case 'php':\n        links.push(`https://packagist.org/packages/${name}`);\n        break;\n      case 'rust':\n        links.push(`https://crates.io/crates/${name}`);\n        break;\n      case 'go':\n        links.push(`https://pkg.go.dev/${name}`);\n        break;\n      case 'java':\n        if (name.includes(':')) {\n          const [group, artifact] = name.split(':');\n          links.push(`https://mvnrepository.com/artifact/${group}/${artifact}`);\n        }\n        break;\n    }\n\n    return links;\n  }\n\n  private getRepositoryUrl(name: string, ecosystem: Ecosystem): string | undefined {\n    // Could be enhanced to query package registries\n    return undefined;\n  }\n\n  private inferServiceType(name: string, image?: string): ServiceType {\n    const nameLower = name.toLowerCase();\n    const imageLower = image?.toLowerCase() || '';\n\n    if (nameLower.includes('db') || nameLower.includes('database') ||\n        ['postgres', 'mysql', 'mongo', 'mariadb'].some(db => imageLower.includes(db))) {\n      return 'database';\n    }\n    if (nameLower.includes('cache') || imageLower.includes('redis') || imageLower.includes('memcached')) {\n      return 'cache';\n    }\n    if (nameLower.includes('queue') || ['rabbitmq', 'kafka', 'nats'].some(q => imageLower.includes(q))) {\n      return 'queue';\n    }\n    if (nameLower.includes('search') || ['elastic', 'meilisearch', 'typesense'].some(s => imageLower.includes(s))) {\n      return 'search';\n    }\n    if (nameLower.includes('api') || nameLower.includes('backend') || nameLower.includes('server')) {\n      return 'api';\n    }\n    if (nameLower.includes('storage') || imageLower.includes('minio') || imageLower.includes('s3')) {\n      return 'storage';\n    }\n    if (['prometheus', 'grafana', 'jaeger', 'datadog'].some(m => imageLower.includes(m))) {\n      return 'monitoring';\n    }\n\n    return 'compute';\n  }\n\n  private shouldGenerateNode(dep: DependencyInfo): boolean {\n    // Generate nodes for frameworks\n    if (dep.type === 'framework') return true;\n\n    // Major packages that should have nodes\n    const majorPackages = [\n      'react', 'vue', 'angular', 'svelte',\n      'typescript', 'webpack', 'vite', 'esbuild',\n      'jest', 'vitest', 'mocha', 'playwright', 'cypress',\n      'express', 'fastify', 'koa', 'next', 'nuxt',\n      'prisma', 'typeorm', 'sequelize', 'drizzle',\n      'axios', 'graphql', 'trpc', 'zod'\n    ];\n\n    return majorPackages.some(pkg => dep.name.toLowerCase().includes(pkg));\n  }\n\n  // ============================================================================\n  // Node Generation Methods\n  // ============================================================================\n\n  private generateFrameworkNode(framework: DependencyInfo, analysis: SeedAnalysis): GeneratedDocument {\n    const title = this.formatTitle(framework.name);\n    const content = this.buildFrameworkContent(framework, analysis);\n\n    const frontmatter: DocumentMetadata = {\n      title,\n      type: 'primitive',\n      category: framework.category,\n      ecosystem: framework.ecosystem,\n      version: framework.version,\n      status: 'active',\n      tags: ['framework', framework.ecosystem, framework.category.split('/').pop() || ''],\n      documentation: framework.documentation,\n      repository: framework.repository,\n      used_by: framework.usedBy.slice(0, 10),\n      created: new Date().toISOString().split('T')[0],\n      updated: new Date().toISOString()\n    };\n\n    return {\n      type: 'primitive',\n      path: join(this.vaultContext.vaultRoot, framework.category, `${this.slugify(framework.name)}.md`),\n      title,\n      content,\n      frontmatter,\n      backlinks: []\n    };\n  }\n\n  private generateDependencyNode(dep: DependencyInfo, analysis: SeedAnalysis): GeneratedDocument {\n    const title = this.formatTitle(dep.name);\n    const content = this.buildDependencyContent(dep, analysis);\n\n    const frontmatter: DocumentMetadata = {\n      title,\n      type: 'primitive',\n      category: dep.category,\n      ecosystem: dep.ecosystem,\n      version: dep.version,\n      status: 'active',\n      tags: [dep.type, dep.ecosystem, dep.category.split('/').pop() || ''],\n      documentation: dep.documentation,\n      repository: dep.repository,\n      used_by: dep.usedBy.slice(0, 10),\n      created: new Date().toISOString().split('T')[0],\n      updated: new Date().toISOString()\n    };\n\n    return {\n      type: 'primitive',\n      path: join(this.vaultContext.vaultRoot, dep.category, `${this.slugify(dep.name)}.md`),\n      title,\n      content,\n      frontmatter,\n      backlinks: []\n    };\n  }\n\n  private generateServiceNode(service: ServiceInfo, analysis: SeedAnalysis): GeneratedDocument {\n    const title = this.formatTitle(service.name);\n    const content = this.buildServiceContent(service, analysis);\n\n    const frontmatter: DocumentMetadata = {\n      title,\n      type: 'service',\n      category: 'service',\n      service_type: service.type,\n      technology: service.technology,\n      status: 'active',\n      tags: ['service', service.type, service.technology],\n      created: new Date().toISOString().split('T')[0],\n      updated: new Date().toISOString()\n    };\n\n    return {\n      type: 'service',\n      path: join(this.vaultContext.vaultRoot, 'services', service.type, `${this.slugify(service.name)}.md`),\n      title,\n      content,\n      frontmatter,\n      backlinks: []\n    };\n  }\n\n  private generateLanguageNode(language: string, analysis: SeedAnalysis): GeneratedDocument {\n    const title = this.formatTitle(language);\n    const content = this.buildLanguageContent(language, analysis);\n\n    const frontmatter: DocumentMetadata = {\n      title,\n      type: 'standard',\n      category: 'language',\n      status: 'active',\n      tags: ['language', 'programming'],\n      created: new Date().toISOString().split('T')[0],\n      updated: new Date().toISOString()\n    };\n\n    return {\n      type: 'standard',\n      path: join(this.vaultContext.vaultRoot, 'standards', 'programming-languages', `${language.toLowerCase()}.md`),\n      title,\n      content,\n      frontmatter,\n      backlinks: []\n    };\n  }\n\n  // ============================================================================\n  // Content Building Methods\n  // ============================================================================\n\n  private buildFrameworkContent(framework: DependencyInfo, analysis: SeedAnalysis): string {\n    const sections: string[] = [];\n\n    sections.push(`# ${this.formatTitle(framework.name)}\\n`);\n    sections.push(`${framework.category} framework for ${framework.ecosystem}.\\n`);\n\n    sections.push(`## Overview\\n`);\n    sections.push(`**Version:** ${framework.version}`);\n    sections.push(`**Type:** ${framework.type}`);\n    sections.push(`**Ecosystem:** ${framework.ecosystem}\\n`);\n\n    if (framework.usedBy.length > 0) {\n      sections.push(`## Usage in This Project\\n`);\n      framework.usedBy.slice(0, 10).forEach(feature => {\n        sections.push(`- [[${this.slugify(feature)}|${feature}]]`);\n      });\n      sections.push('');\n    }\n\n    if (framework.documentation && framework.documentation.length > 0) {\n      sections.push(`## Documentation\\n`);\n      framework.documentation.forEach(url => {\n        sections.push(`- [${this.getLinkText(url)}](${url})`);\n      });\n      sections.push('');\n    }\n\n    if (framework.repository) {\n      sections.push(`## Repository\\n`);\n      sections.push(`- [Source Code](${framework.repository})\\n`);\n    }\n\n    const related = this.findRelatedTechnologies(framework, analysis);\n    if (related.length > 0) {\n      sections.push(`## Related Primitives\\n`);\n      related.forEach(rel => {\n        sections.push(`- [[${this.slugify(rel)}]]`);\n      });\n      sections.push('');\n    }\n\n    return sections.join('\\n');\n  }\n\n  private buildDependencyContent(dep: DependencyInfo, analysis: SeedAnalysis): string {\n    const sections: string[] = [];\n\n    sections.push(`# ${this.formatTitle(dep.name)}\\n`);\n    sections.push(`${dep.category} ${dep.type} for ${dep.ecosystem}.\\n`);\n\n    sections.push(`## Overview\\n`);\n    sections.push(`**Version:** ${dep.version}`);\n    sections.push(`**Type:** ${dep.type}\\n`);\n\n    if (dep.usedBy.length > 0) {\n      sections.push(`## Usage\\n`);\n      dep.usedBy.slice(0, 10).forEach(ref => {\n        sections.push(`- [[${this.slugify(ref)}|${ref}]]`);\n      });\n      if (dep.usedBy.length > 10) {\n        sections.push(`- ...and ${dep.usedBy.length - 10} more`);\n      }\n      sections.push('');\n    }\n\n    if (dep.documentation && dep.documentation.length > 0) {\n      sections.push(`## Documentation\\n`);\n      dep.documentation.forEach(url => {\n        sections.push(`- [${this.getLinkText(url)}](${url})`);\n      });\n      sections.push('');\n    }\n\n    return sections.join('\\n');\n  }\n\n  private buildServiceContent(service: ServiceInfo, analysis: SeedAnalysis): string {\n    const sections: string[] = [];\n\n    sections.push(`# ${this.formatTitle(service.name)}\\n`);\n    sections.push(`${service.type} service using ${service.technology}.\\n`);\n\n    sections.push(`## Service Details\\n`);\n    sections.push(`**Type:** ${service.type}`);\n    sections.push(`**Technology:** ${service.technology}`);\n    if (service.framework) {\n      sections.push(`**Framework:** [[${this.slugify(service.framework)}|${service.framework}]]`);\n    }\n    if (service.language) {\n      sections.push(`**Language:** [[${service.language}]]`);\n    }\n    sections.push('');\n\n    if (service.ports && service.ports.length > 0) {\n      sections.push(`## Ports\\n`);\n      service.ports.forEach(port => {\n        sections.push(`- ${port}`);\n      });\n      sections.push('');\n    }\n\n    if (service.dependencies.length > 0) {\n      sections.push(`## Dependencies\\n`);\n      service.dependencies.forEach(dep => {\n        sections.push(`- [[${this.slugify(dep)}]]`);\n      });\n      sections.push('');\n    }\n\n    return sections.join('\\n');\n  }\n\n  private buildLanguageContent(language: string, analysis: SeedAnalysis): string {\n    const sections: string[] = [];\n    const langLower = language.toLowerCase();\n\n    sections.push(`# ${this.formatTitle(language)}\\n`);\n    sections.push(`Programming language used in this project.\\n`);\n\n    const frameworks = analysis.frameworks.filter(f =>\n      f.ecosystem === langLower ||\n      (langLower === 'javascript' && f.ecosystem === 'nodejs') ||\n      (langLower === 'typescript' && f.ecosystem === 'nodejs')\n    );\n    const dependencies = analysis.dependencies.filter(d =>\n      d.ecosystem === langLower ||\n      (langLower === 'javascript' && d.ecosystem === 'nodejs') ||\n      (langLower === 'typescript' && d.ecosystem === 'nodejs')\n    );\n\n    if (frameworks.length > 0) {\n      sections.push(`## Frameworks\\n`);\n      frameworks.slice(0, 10).forEach(fw => {\n        sections.push(`- [[${this.slugify(fw.name)}|${this.formatTitle(fw.name)}]]`);\n      });\n      sections.push('');\n    }\n\n    if (dependencies.length > 0) {\n      sections.push(`## Libraries (${dependencies.length})\\n`);\n      sections.push(`This project uses ${dependencies.length} ${language} dependencies.\\n`);\n    }\n\n    sections.push(`## Resources\\n`);\n    sections.push(`- [Official Documentation](${this.getLanguageDocUrl(language)})`);\n    sections.push('');\n\n    return sections.join('\\n');\n  }\n\n  // ============================================================================\n  // Helper Methods\n  // ============================================================================\n\n  private findRelatedTechnologies(dep: DependencyInfo, analysis: SeedAnalysis): string[] {\n    const related: string[] = [];\n\n    // Add related frameworks in same category\n    for (const other of analysis.frameworks) {\n      if (other.name !== dep.name && other.category === dep.category) {\n        related.push(other.name);\n      }\n    }\n\n    return related.slice(0, 5);\n  }\n\n  private formatTitle(name: string): string {\n    return name\n      .split(/[-_/]/)\n      .filter(Boolean)\n      .map(word => word.charAt(0).toUpperCase() + word.slice(1))\n      .join(' ');\n  }\n\n  private slugify(text: string): string {\n    return text\n      .toLowerCase()\n      .replace(/[^a-z0-9]+/g, '-')\n      .replace(/^-|-$/g, '');\n  }\n\n  private getLinkText(url: string): string {\n    if (url.includes('github.com')) return 'GitHub';\n    if (url.includes('npmjs.com')) return 'NPM';\n    if (url.includes('pypi.org')) return 'PyPI';\n    if (url.includes('crates.io')) return 'Crates.io';\n    if (url.includes('pkg.go.dev')) return 'Go Docs';\n    if (url.includes('packagist.org')) return 'Packagist';\n    if (url.includes('mvnrepository.com')) return 'Maven';\n    return 'Documentation';\n  }\n\n  private getLanguageDocUrl(language: string): string {\n    const urls: Record<string, string> = {\n      'javascript': 'https://developer.mozilla.org/en-US/docs/Web/JavaScript',\n      'typescript': 'https://www.typescriptlang.org/docs/',\n      'python': 'https://docs.python.org/',\n      'php': 'https://www.php.net/docs.php',\n      'rust': 'https://doc.rust-lang.org/',\n      'go': 'https://go.dev/doc/',\n      'java': 'https://docs.oracle.com/en/java/',\n      'ruby': 'https://www.ruby-lang.org/en/documentation/'\n    };\n\n    return urls[language.toLowerCase()] || `https://www.google.com/search?q=${language}+documentation`;\n  }\n}\n\n// ============================================================================\n// Convenience Functions\n// ============================================================================\n\n/**\n * Create and run a seed analysis\n */\nexport async function analyzeSeed(projectRoot: string, docsPath: string): Promise<SeedAnalysis> {\n  const generator = await SeedGenerator.create(projectRoot, docsPath);\n  return generator.analyze();\n}\n\n/**\n * Initialize primitives from codebase analysis\n */\nexport async function initPrimitives(\n  projectRoot: string,\n  docsPath: string,\n  options?: CultivationOptions\n): Promise<InitPrimitivesResult> {\n  const generator = await SeedGenerator.create(projectRoot, docsPath);\n  return 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package/dist/cultivation/types.d.ts

@@ -0,0 +1,230 @@
+/**
+ * Cultivation System - Type Definitions
+ *
+ * Types for the seed generator and cultivation system that analyzes
+ * codebases and generates knowledge graph primitives.
+ *
+ * @module cultivation/types
+ */
+import type { NodeType, NodeFrontmatter } from '../core/types.js';
+/**
+ * Context about the vault/docs structure
+ */
+export interface VaultContext {
+    /** Content of primitives.md - foundational concepts */
+    primitives?: string;
+    /** Content of features.md - current feature set */
+    features?: string;
+    /** Content of tech-specs.md - technical specifications */
+    techSpecs?: string;
+    /** Vault/docs root directory */
+    vaultRoot: string;
+    /** All markdown files in vault */
+    allFiles: string[];
+}
+/**
+ * Supported programming language ecosystems
+ */
+export type Ecosystem = 'nodejs' | 'python' | 'php' | 'rust' | 'go' | 'java' | 'ruby' | 'dotnet' | 'other';
+/**
+ * Dependency classification type
+ */
+export type DependencyType = 'framework' | 'library' | 'tool' | 'service' | 'language' | 'runtime';
+/**
+ * Information about a detected dependency
+ */
+export interface DependencyInfo {
+    /** Package/library name */
+    name: string;
+    /** Version string */
+    version: string;
+    /** Classification type */
+    type: DependencyType;
+    /** Category in knowledge graph (maps to PRIMITIVES.md structure) */
+    category: string;
+    /** Package ecosystem (nodejs, python, etc.) */
+    ecosystem: Ecosystem;
+    /** Optional description */
+    description?: string;
+    /** Documentation URLs */
+    documentation?: string[];
+    /** Repository URL */
+    repository?: string;
+    /** Files/docs that use this dependency */
+    usedBy: string[];
+    /** Related dependencies */
+    relatedTo: string[];
+    /** Is this a dev dependency? */
+    isDev?: boolean;
+}
+/**
+ * Service type classification
+ */
+export type ServiceType = 'api' | 'database' | 'queue' | 'cache' | 'storage' | 'compute' | 'monitoring' | 'auth' | 'search' | 'ml';
+/**
+ * Information about a detected service
+ */
+export interface ServiceInfo {
+    /** Service name */
+    name: string;
+    /** Service type */
+    type: ServiceType;
+    /** Technology used (postgres, redis, etc.) */
+    technology: string;
+    /** Framework if applicable */
+    framework?: string;
+    /** Programming language */
+    language?: string;
+    /** Service dependencies */
+    dependencies: string[];
+    /** API endpoints if detected */
+    endpoints?: string[];
+    /** Port mappings */
+    ports?: number[];
+    /** Environment variables */
+    envVars?: string[];
+}
+/**
+ * Complete seed analysis result from codebase
+ */
+export interface SeedAnalysis {
+    /** All detected dependencies */
+    dependencies: DependencyInfo[];
+    /** Detected services */
+    services: ServiceInfo[];
+    /** Framework dependencies (subset of dependencies) */
+    frameworks: DependencyInfo[];
+    /** Programming languages used */
+    languages: string[];
+    /** Deployment configurations found */
+    deployments: string[];
+    /** Existing concepts from vault */
+    existingConcepts: string[];
+    /** Existing features from vault */
+    existingFeatures: string[];
+    /** Analysis metadata */
+    metadata: {
+        analyzedAt: string;
+        projectRoot: string;
+        filesScanned: number;
+        duration: number;
+    };
+}
+/**
+ * Document metadata for generated files
+ */
+export interface DocumentMetadata extends NodeFrontmatter {
+    /** Ecosystem/language */
+    ecosystem?: Ecosystem;
+    /** Version of the dependency */
+    version?: string;
+    /** Service type if applicable */
+    service_type?: ServiceType;
+    /** Technology used */
+    technology?: string;
+    /** Documentation links */
+    documentation?: string[];
+    /** Repository URL */
+    repository?: string;
+    /** Files using this primitive */
+    used_by?: string[];
+}
+/**
+ * Generated document from seed analysis
+ */
+export interface GeneratedDocument {
+    /** Document type */
+    type: NodeType | string;
+    /** Output file path */
+    path: string;
+    /** Document title */
+    title: string;
+    /** Markdown content */
+    content: string;
+    /** Frontmatter metadata */
+    frontmatter: DocumentMetadata;
+    /** Backlinks to include */
+    backlinks: string[];
+}
+/**
+ * Report from cultivation process
+ */
+export interface CultivationReport {
+    /** Files processed */
+    filesProcessed: number;
+    /** Frontmatter entries added */
+    frontmatterAdded: number;
+    /** Documents generated */
+    documentsGenerated: number;
+    /** Footers updated */
+    footersUpdated: number;
+    /** Warnings encountered */
+    warnings: string[];
+    /** Errors encountered */
+    errors: string[];
+    /** Generated document details */
+    generatedDocuments: GeneratedDocument[];
+    /** Processing time in ms */
+    processingTime: number;
+}
+/**
+ * Options for cultivation process
+ */
+export interface CultivationOptions {
+    /** Project root path */
+    projectRoot: string;
+    /** Docs/vault path */
+    docsPath: string;
+    /** Output path for generated files */
+    outputPath?: string;
+    /** Only analyze, don't generate */
+    dryRun?: boolean;
+    /** Verbose output */
+    verbose?: boolean;
+    /** Filter to specific ecosystems */
+    ecosystems?: Ecosystem[];
+    /** Minimum dependency importance to include */
+    minImportance?: 'all' | 'major' | 'framework';
+    /** Include dev dependencies */
+    includeDev?: boolean;
+}
+/**
+ * Analysis of missing documentation/nodes
+ */
+export interface GapAnalysis {
+    /** Missing concept documentation */
+    missingConcepts: string[];
+    /** Missing feature documentation */
+    missingFeatures: string[];
+    /** Missing architecture documentation */
+    missingArchitecture: string[];
+    /** Missing integration documentation */
+    missingIntegrations: string[];
+    /** Areas needing improvement */
+    improvementAreas: string[];
+    /** Items needing replacement */
+    replacementNeeded: Array<{
+        area: string;
+        current: string;
+        reason: string;
+        priority: 'low' | 'medium' | 'high' | 'critical';
+    }>;
+}
+/**
+ * Result of init-primitives command
+ */
+export interface InitPrimitivesResult {
+    /** Operation success */
+    success: boolean;
+    /** Seed analysis performed */
+    analysis: SeedAnalysis;
+    /** Documents generated */
+    documentsGenerated: GeneratedDocument[];
+    /** Directories created */
+    directoriesCreated: string[];
+    /** Errors encountered */
+    errors: string[];
+    /** Warnings */
+    warnings: string[];
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/cultivation/types.d.ts.map

@@ -0,0 +1 @@
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package/dist/database/schemas/index.d.ts

@@ -0,0 +1,85 @@
+/**
+ * Database Schemas
+ *
+ * Exports SQL schema definitions for PostgreSQL integration.
+ * Provides utilities for loading and managing RuVector and Exochain schemas.
+ *
+ * @module database/schemas
+ */
+/**
+ * Schema names supported by the system
+ */
+export type SchemaName = 'ruvector' | 'exochain';
+/**
+ * Load a SQL schema file from disk
+ *
+ * @param name - The schema name to load ('ruvector' or 'exochain')
+ * @returns The SQL schema content as a string
+ * @throws Error if the schema file cannot be read
+ *
+ * @example
+ * ```typescript
+ * const ruvectorSchema = loadSchema('ruvector');
+ * await pgClient.query(ruvectorSchema);
+ * ```
+ */
+export declare function loadSchema(name: SchemaName): string;
+/**
+ * Get all available schemas
+ *
+ * @returns A record mapping schema names to their SQL content
+ *
+ * @example
+ * ```typescript
+ * const schemas = getAllSchemas();
+ * for (const [name, sql] of Object.entries(schemas)) {
+ *   console.log(`Loading schema: ${name}`);
+ *   await pgClient.query(sql);
+ * }
+ * ```
+ */
+export declare function getAllSchemas(): Record<SchemaName, string>;
+/**
+ * Check if a schema name is valid
+ *
+ * @param name - The schema name to validate
+ * @returns True if the schema name is valid
+ *
+ * @example
+ * ```typescript
+ * if (isValidSchemaName('ruvector')) {
+ *   const schema = loadSchema('ruvector');
+ * }
+ * ```
+ */
+export declare function isValidSchemaName(name: string): name is SchemaName;
+/**
+ * Get the list of available schema names
+ *
+ * @returns Array of available schema names
+ *
+ * @example
+ * ```typescript
+ * const names = getSchemaNames(); // ['ruvector', 'exochain']
+ * ```
+ */
+export declare function getSchemaNames(): SchemaName[];
+/**
+ * RuVector schema SQL (inline for bundled distribution)
+ *
+ * This constant provides a minimal inline version of the RuVector schema
+ * for use cases where file system access is not available (e.g., bundled builds).
+ *
+ * For the full schema with all functions and triggers, use loadSchema('ruvector').
+ */
+export declare const RUVECTOR_SCHEMA = "\n-- Inline RuVector schema for bundled distribution\nCREATE SCHEMA IF NOT EXISTS ruvector;\n\nCREATE TABLE IF NOT EXISTS ruvector.embeddings (\n  id TEXT PRIMARY KEY,\n  node_type TEXT NOT NULL,\n  embedding REAL[] NOT NULL,\n  dimensions INTEGER NOT NULL,\n  metadata JSONB DEFAULT '{}',\n  created_at TIMESTAMPTZ DEFAULT NOW(),\n  updated_at TIMESTAMPTZ DEFAULT NOW()\n);\n\nCREATE INDEX IF NOT EXISTS idx_embeddings_node_type\nON ruvector.embeddings(node_type);\n\nCREATE INDEX IF NOT EXISTS idx_embeddings_metadata\nON ruvector.embeddings USING GIN (metadata);\n\nCREATE TABLE IF NOT EXISTS ruvector.trajectories (\n  id TEXT PRIMARY KEY,\n  agent_id TEXT NOT NULL,\n  workflow_id TEXT,\n  steps JSONB DEFAULT '[]',\n  started_at TIMESTAMPTZ NOT NULL,\n  completed_at TIMESTAMPTZ,\n  success BOOLEAN DEFAULT FALSE,\n  total_duration INTEGER DEFAULT 0,\n  metadata JSONB DEFAULT '{}'\n);\n\nCREATE INDEX IF NOT EXISTS idx_trajectories_agent_id\nON ruvector.trajectories(agent_id);\n\nCREATE INDEX IF NOT EXISTS idx_trajectories_workflow_id\nON ruvector.trajectories(workflow_id);\n\nCREATE INDEX IF NOT EXISTS idx_trajectories_success\nON ruvector.trajectories(success);\n\nCREATE TABLE IF NOT EXISTS ruvector.patterns (\n  id TEXT PRIMARY KEY,\n  pattern_type TEXT NOT NULL,\n  actions TEXT[] NOT NULL,\n  frequency INTEGER DEFAULT 1,\n  avg_duration REAL DEFAULT 0,\n  success_rate REAL DEFAULT 0,\n  confidence REAL DEFAULT 0,\n  metadata JSONB DEFAULT '{}',\n  created_at TIMESTAMPTZ DEFAULT NOW(),\n  updated_at TIMESTAMPTZ DEFAULT NOW()\n);\n\nCREATE INDEX IF NOT EXISTS idx_patterns_type\nON ruvector.patterns(pattern_type);\n\nCREATE INDEX IF NOT EXISTS idx_patterns_confidence\nON ruvector.patterns(confidence);\n\nCREATE TABLE IF NOT EXISTS ruvector.learning_records (\n  id SERIAL PRIMARY KEY,\n  trajectory_id TEXT NOT NULL REFERENCES ruvector.trajectories(id),\n  pattern_id TEXT NOT NULL REFERENCES ruvector.patterns(id),\n  pattern_type TEXT NOT NULL,\n  confidence REAL NOT NULL,\n  learned_at TIMESTAMPTZ DEFAULT NOW(),\n  applied_count INTEGER DEFAULT 0\n);\n\nCREATE INDEX IF NOT EXISTS idx_learning_records_pattern\nON ruvector.learning_records(pattern_id);\n\nCREATE TABLE IF NOT EXISTS ruvector.graph_nodes (\n  id TEXT PRIMARY KEY,\n  node_type TEXT NOT NULL,\n  properties JSONB DEFAULT '{}',\n  embedding_id TEXT REFERENCES ruvector.embeddings(id),\n  created_at TIMESTAMPTZ DEFAULT NOW(),\n  updated_at TIMESTAMPTZ DEFAULT NOW()\n);\n\nCREATE INDEX IF NOT EXISTS idx_graph_nodes_type\nON ruvector.graph_nodes(node_type);\n\nCREATE INDEX IF NOT EXISTS idx_graph_nodes_properties\nON ruvector.graph_nodes USING GIN (properties);\n\nCREATE TABLE IF NOT EXISTS ruvector.graph_edges (\n  id TEXT PRIMARY KEY,\n  source_id TEXT NOT NULL REFERENCES ruvector.graph_nodes(id),\n  target_id TEXT NOT NULL REFERENCES ruvector.graph_nodes(id),\n  edge_type TEXT NOT NULL,\n  properties JSONB DEFAULT '{}',\n  created_at TIMESTAMPTZ DEFAULT NOW()\n);\n\nCREATE INDEX IF NOT EXISTS idx_graph_edges_source\nON ruvector.graph_edges(source_id);\n\nCREATE INDEX IF NOT EXISTS idx_graph_edges_target\nON ruvector.graph_edges(target_id);\n\nCREATE INDEX IF NOT EXISTS idx_graph_edges_type\nON ruvector.graph_edges(edge_type);\n";
+/**
+ * Exochain schema SQL (inline for bundled distribution)
+ *
+ * This constant provides a minimal inline version of the Exochain schema
+ * for use cases where file system access is not available (e.g., bundled builds).
+ *
+ * For the full schema with all functions and triggers, use loadSchema('exochain').
+ */
+export declare const EXOCHAIN_SCHEMA = "\n-- Inline Exochain schema for bundled distribution\nCREATE SCHEMA IF NOT EXISTS exochain;\n\nCREATE TABLE IF NOT EXISTS exochain.events (\n  id TEXT PRIMARY KEY,\n  parents TEXT[] DEFAULT '{}',\n  hlc_physical_ms BIGINT NOT NULL,\n  hlc_logical INTEGER NOT NULL,\n  author TEXT NOT NULL,\n  payload_type TEXT NOT NULL,\n  payload JSONB NOT NULL,\n  signature TEXT NOT NULL,\n  created_at TIMESTAMPTZ DEFAULT NOW()\n);\n\nCREATE INDEX IF NOT EXISTS idx_events_author\nON exochain.events(author);\n\nCREATE INDEX IF NOT EXISTS idx_events_payload_type\nON exochain.events(payload_type);\n\nCREATE INDEX IF NOT EXISTS idx_events_hlc\nON exochain.events(hlc_physical_ms, hlc_logical);\n\nCREATE INDEX IF NOT EXISTS idx_events_parents\nON exochain.events USING GIN (parents);\n\nCREATE TABLE IF NOT EXISTS exochain.checkpoints (\n  height INTEGER PRIMARY KEY,\n  event_root TEXT NOT NULL,\n  state_root TEXT NOT NULL,\n  timestamp TIMESTAMPTZ NOT NULL,\n  created_at TIMESTAMPTZ DEFAULT NOW()\n);\n\nCREATE TABLE IF NOT EXISTS exochain.checkpoint_signatures (\n  id SERIAL PRIMARY KEY,\n  checkpoint_height INTEGER NOT NULL REFERENCES exochain.checkpoints(height),\n  validator_did TEXT NOT NULL,\n  signature TEXT NOT NULL,\n  signed_at TIMESTAMPTZ DEFAULT NOW(),\n  UNIQUE(checkpoint_height, validator_did)\n);\n\nCREATE INDEX IF NOT EXISTS idx_checkpoint_signatures_height\nON exochain.checkpoint_signatures(checkpoint_height);\n\nCREATE TABLE IF NOT EXISTS exochain.tips (\n  event_id TEXT PRIMARY KEY REFERENCES exochain.events(id),\n  added_at TIMESTAMPTZ DEFAULT NOW()\n);\n\nCREATE TABLE IF NOT EXISTS exochain.peers (\n  id TEXT PRIMARY KEY,\n  endpoint TEXT NOT NULL UNIQUE,\n  did TEXT,\n  status TEXT DEFAULT 'disconnected',\n  last_sync_time TIMESTAMPTZ,\n  last_checkpoint_height INTEGER,\n  events_received INTEGER DEFAULT 0,\n  events_sent INTEGER DEFAULT 0,\n  errors INTEGER DEFAULT 0,\n  created_at TIMESTAMPTZ DEFAULT NOW(),\n  updated_at TIMESTAMPTZ DEFAULT NOW()\n);\n\nCREATE INDEX IF NOT EXISTS idx_peers_status\nON exochain.peers(status);\n\nCREATE TABLE IF NOT EXISTS exochain.sync_log (\n  id SERIAL PRIMARY KEY,\n  peer_id TEXT NOT NULL,\n  direction TEXT NOT NULL,\n  events_transferred INTEGER DEFAULT 0,\n  duration_ms INTEGER,\n  success BOOLEAN DEFAULT FALSE,\n  error_message TEXT,\n  started_at TIMESTAMPTZ NOT NULL,\n  completed_at TIMESTAMPTZ\n);\n\nCREATE INDEX IF NOT EXISTS idx_sync_log_peer\nON exochain.sync_log(peer_id);\n\nCREATE INDEX IF NOT EXISTS idx_sync_log_started_at\nON exochain.sync_log(started_at);\n";
+//# sourceMappingURL=index.d.ts.map

package/dist/database/schemas/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/generators/claude-md.d.ts

@@ -3,6 +3,13 @@
  *
  * Generates and manages CLAUDE.md configuration files for Claude Code
  * with knowledge graph integration.
+ *
+ * SECURITY NOTES (Handlebars Templates):
+ * - All templates use double-braces {{}} which HTML-escapes output
+ * - Triple-braces {{{raw}}} are NOT used, preventing XSS in HTML contexts
+ * - User input is sanitized via sanitizeTemplateInput() before template use
+ * - Template content is validated and Handlebars delimiters are stripped from user input
+ * - See: https://handlebarsjs.com/guide/#html-escaping
  */
 import type { ClaudeMdGeneratorOptions, ClaudeMdSection } from '../core/types.js';
 /**

package/dist/generators/claude-md.d.ts.map

@@ -1 +1 @@
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package/dist/generators/claude-md.js.map

@@ -1 +1 @@
-{"version":3,"file":"claude-md.js","sources":["../../src/generators/claude-md.ts"],"sourcesContent":["/**\n * CLAUDE.md Generator\n *\n * Generates and manages CLAUDE.md configuration files for Claude Code\n * with knowledge graph integration.\n */\n\nimport { existsSync, readFileSync, writeFileSync } from 'fs';\nimport { join, basename, resolve, normalize } from 'path';\nimport Handlebars from 'handlebars';\nimport type {\n  ClaudeMdGeneratorOptions,\n  ClaudeMdSection,\n  ClaudeMdTemplate,\n} from '../core/types.js';\n\n/**\n * Validate that a template path is within the project directory\n * and is a markdown file\n */\nfunction validateTemplatePath(projectRoot: string, templatePath: string): string | null {\n  // Resolve both paths to absolute\n  const resolvedRoot = resolve(projectRoot);\n  const resolvedTemplate = resolve(projectRoot, templatePath);\n  const normalizedTemplate = normalize(resolvedTemplate);\n\n  // Ensure template is within project directory\n  if (!normalizedTemplate.startsWith(resolvedRoot + '/') && normalizedTemplate !== resolvedRoot) {\n    return null; 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Follow these guidelines:\n\n- Never hardcode secrets or API keys\n- Use environment variables for sensitive data\n- Validate all user inputs\n- Sanitize outputs to prevent XSS\n- Follow OWASP guidelines`,\n  },\n\n  agents: {\n    title: 'Available Agents',\n    order: 40,\n    content: `Use Claude Code's Task tool to spawn specialized agents:\n\n### Core Agents\n\\`coder\\`, \\`reviewer\\`, \\`tester\\`, \\`planner\\`, \\`researcher\\`\n\n### SPARC Agents\n\\`sparc-coord\\`, \\`sparc-coder\\`, \\`specification\\`, \\`architecture\\`\n\n### Specialized Agents\n\\`backend-dev\\`, \\`system-architect\\`, \\`code-analyzer\\`, \\`api-docs\\`\n\n### Usage\n\n\\`\\`\\`javascript\nTask(\"Implement feature\", \"Description...\", \"coder\")\nTask(\"Review code\", \"Description...\", \"reviewer\")\n\\`\\`\\``,\n  },\n};\n\n/**\n * Generate CLAUDE.md content\n */\nexport function generateClaudeMd(options: ClaudeMdGeneratorOptions): string {\n  const {\n    projectRoot,\n    template,\n    includeKnowledgeGraph = true,\n    includeClaudeFlow = true,\n    customSections = [],\n  } = options;\n\n  // Detect project info\n  const projectInfo = detectProjectInfo(projectRoot);\n\n  // Prepare context\n  const context = {\n    projectName: projectInfo.name,\n    description: projectInfo.description || `${projectInfo.name} project`,\n    docsPath: getDocsPath(projectRoot),\n    includeKnowledgeGraph,\n    includeClaudeFlow,\n    namespace: 'knowledge-graph',\n    syncOnChange: true,\n    buildCommands: projectInfo.scripts,\n    codeStyleRules: getDefaultCodeStyleRules(),\n    customSections: [...customSections],\n    customDirectories: null,\n  };\n\n  // Get template content (pass projectRoot for path validation)\n  const templateContent = template ? getTemplateContent(template, projectRoot) : DEFAULT_TEMPLATE;\n\n  // Compile and render\n  const compiled = Handlebars.compile(templateContent);\n  return compiled(context);\n}\n\n/**\n * Create or update CLAUDE.md file\n */\nexport async function updateClaudeMd(options: ClaudeMdGeneratorOptions): Promise<{\n  created: boolean;\n  updated: boolean;\n  path: string;\n  content: string;\n}> {\n  const { projectRoot, outputPath } = options;\n  const filePath = outputPath || join(projectRoot, 'CLAUDE.md');\n\n  const exists = existsSync(filePath);\n  const content = generateClaudeMd(options);\n\n  writeFileSync(filePath, content, 'utf-8');\n\n  return {\n    created: !exists,\n    updated: exists,\n    path: filePath,\n    content,\n  };\n}\n\n/**\n * Add section to existing CLAUDE.md\n */\nexport function addSection(\n  projectRoot: string,\n  section: ClaudeMdSection\n): boolean {\n  const filePath = join(projectRoot, 'CLAUDE.md');\n\n  if (!existsSync(filePath)) {\n    return false;\n  }\n\n  const content = readFileSync(filePath, 'utf-8');\n\n  // Check if section already exists\n  const sectionRegex = new RegExp(`^## ${section.title}`, 'm');\n  if (sectionRegex.test(content)) {\n    return false; // Section already exists\n  }\n\n  // Find the best position to insert (before Important Instructions or at end)\n  const importantMatch = content.match(/^## Important Instructions/m);\n  let newContent: string;\n\n  const sectionContent = `\\n## ${section.title}\\n\\n${section.content}\\n`;\n\n  if (importantMatch && importantMatch.index !== undefined) {\n    newContent =\n      content.slice(0, importantMatch.index) +\n      sectionContent +\n      '\\n' +\n      content.slice(importantMatch.index);\n  } else {\n    newContent = content + sectionContent;\n  }\n\n  writeFileSync(filePath, newContent, 'utf-8');\n  return true;\n}\n\n/**\n * Get predefined section template\n */\nexport function getSectionTemplate(name: string): ClaudeMdSection | null {\n  return SECTION_TEMPLATES[name] || null;\n}\n\n/**\n * List available section templates\n */\nexport function listSectionTemplates(): string[] {\n  return Object.keys(SECTION_TEMPLATES);\n}\n\n// 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