npm - @weavelogic/knowledge-graph-agent - Versions diffs - 0.10.6 → 0.11.0 - Mend

@weavelogic/knowledge-graph-agent 0.10.6 → 0.11.0

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Files changed (16) hide show

package/dist/cli/commands/analyze.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"analyze.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/analyze.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAQpC;;GAEG;AACH,wBAAgB,oBAAoB,IAAI,OAAO,CAoe9C"}

package/dist/cli/commands/analyze.js CHANGED Viewed

@@ -173,6 +173,108 @@ function createAnalyzeCommand() {
       process.exit(1);
     }
   });
+  command.command("migrate").description("Implement analysis recommendations using AI agents to fill gaps, answer questions, and build connections").argument("[path]", "Project root path", ".").option("-d, --docs <dir>", "Documentation directory", "docs").option("-a, --analysis <dir>", "Analysis directory (relative to docs)", "analysis").option("--max-agents <n>", "Maximum parallel agents", "8").option("--dry-run", "Preview changes without making them").option("--use-vector", "Use vector search for context retrieval").option("-v, --verbose", "Verbose output").action(async (path, options) => {
+    const spinner = ora("Initializing migration orchestration...").start();
+    try {
+      const projectRoot = validateProjectRoot(path);
+      const docsDir = options.docs;
+      const analysisDir = options.analysis;
+      const dryRun = options.dryRun ?? false;
+      const verbose = options.verbose ?? false;
+      const analysisPath = join(projectRoot, docsDir, analysisDir);
+      if (!existsSync(analysisPath)) {
+        spinner.fail(`Analysis directory not found: ${analysisPath}`);
+        console.log(chalk.gray('  Run "kg cultivate --deep-analysis" first to generate analysis'));
+        process.exit(1);
+      }
+      const requiredFiles = ["documentation-gaps.md", "research-questions.md"];
+      const missingFiles = requiredFiles.filter((f) => !existsSync(join(analysisPath, f)));
+      if (missingFiles.length > 0) {
+        spinner.warn(`Missing analysis files: ${missingFiles.join(", ")}`);
+        console.log(chalk.gray('  Run "kg cultivate --deep-analysis" to generate complete analysis'));
+      }
+      const { MigrationOrchestrator } = await import("../../cultivation/migration-orchestrator.js");
+      const orchestrator = new MigrationOrchestrator({
+        projectRoot,
+        docsPath: docsDir,
+        analysisDir,
+        verbose,
+        dryRun,
+        useVectorSearch: options.useVector ?? false,
+        maxAgents: parseInt(options.maxAgents || "8", 10)
+      });
+      const status = await orchestrator.getAvailabilityStatus();
+      if (!status.available) {
+        spinner.fail("Migration unavailable");
+        console.log(chalk.red(`  ${status.reason}`));
+        console.log(chalk.gray("  Set GOOGLE_GEMINI_API_KEY or ANTHROPIC_API_KEY"));
+        process.exit(1);
+      }
+      spinner.text = `Running migration (${status.reason})...`;
+      if (dryRun) {
+        spinner.text = `Running migration dry run (${status.reason})...`;
+      }
+      const result = await orchestrator.migrate();
+      if (result.success) {
+        if (dryRun) {
+          spinner.succeed("Migration dry run complete!");
+        } else {
+          spinner.succeed("Migration complete!");
+        }
+      } else {
+        spinner.warn("Migration completed with errors");
+      }
+      console.log();
+      console.log(chalk.cyan.bold("  Migration Results"));
+      console.log(chalk.gray("  ─────────────────────────────────────"));
+      console.log();
+      if (dryRun) {
+        console.log(chalk.yellow("  [DRY RUN] No changes were made\n"));
+      }
+      console.log(chalk.white("  Summary:"));
+      console.log(chalk.gray(`    Analysis dir:       ${docsDir}/${analysisDir}/`));
+      console.log(chalk.green(`    Agents used:        ${result.agentsUsed}`));
+      console.log(chalk.green(`    Documents created:  ${result.documentsCreated}`));
+      console.log(chalk.blue(`    Documents updated:  ${result.documentsUpdated}`));
+      console.log(chalk.cyan(`    Gaps filled:        ${result.gapsFilled}`));
+      console.log(chalk.cyan(`    Questions answered: ${result.questionsAnswered}`));
+      console.log(chalk.cyan(`    Connections added:  ${result.connectionsAdded}`));
+      console.log(chalk.gray(`    Duration:           ${(result.duration / 1e3).toFixed(1)}s`));
+      if (result.warnings.length > 0) {
+        console.log();
+        console.log(chalk.yellow("  Warnings:"));
+        result.warnings.slice(0, 5).forEach((w) => {
+          console.log(chalk.gray(`    - ${w}`));
+        });
+        if (result.warnings.length > 5) {
+          console.log(chalk.gray(`    ... and ${result.warnings.length - 5} more`));
+        }
+      }
+      if (result.errors.length > 0) {
+        console.log();
+        console.log(chalk.red("  Errors:"));
+        result.errors.slice(0, 5).forEach((e) => {
+          console.log(chalk.gray(`    - ${e}`));
+        });
+        if (result.errors.length > 5) {
+          console.log(chalk.gray(`    ... and ${result.errors.length - 5} more`));
+        }
+      }
+      if (!dryRun && result.documentsCreated > 0) {
+        console.log();
+        console.log(chalk.cyan("  Next steps:"));
+        console.log(chalk.white(`    1. Review generated documents in ${docsDir}/`));
+        console.log(chalk.white(`    2. Check ${docsDir}/${analysisDir}/ for summaries`));
+        console.log(chalk.white(`    3. Run: kg graph --docs ${docsDir}`));
+        console.log(chalk.white(`    4. Run: kg stats --docs ${docsDir}`));
+      }
+      console.log();
+    } catch (error) {
+      spinner.fail("Migration failed");
+      console.error(chalk.red(String(error)));
+      process.exit(1);
+    }
+  });
   command.command("report").description("Generate analysis report without creating files").option("-p, --path <path>", "Project root path", ".").option("-s, --source <dir>", "Source docs directory", "docs").option("--json", "Output as JSON").action(async (options) => {
     const spinner = ora("Generating analysis report...").start();
     try {

package/dist/cli/commands/analyze.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"analyze.js","sources":["../../../src/cli/commands/analyze.ts"],"sourcesContent":["/*\n Analyze Command\n \n Advanced documentation analyzer using claude-flow for deep analysis\n * and creating proper knowledge graph documentation structure.\n /\n\nimport { Command } from 'commander';\nimport chalk from 'chalk';\nimport ora from 'ora';\nimport { existsSync } from 'fs';\nimport { join } from 'path';\nimport { analyzeDocs } from '../../generators/docs-analyzer.js';\nimport { validateProjectRoot } from '../../core/security.js';\n\n/\n Create analyze command\n /\nexport function createAnalyzeCommand(): Command {\n const command = new Command('analyze');\n\n command\n .description('Analyze and migrate docs to knowledge graph structure')\n .option('-p, --path <path>', 'Project root path', '.')\n .option('-s, --source <dir>', 'Source docs directory', 'docs')\n .option('-t, --target <dir>', 'Target directory', 'docs')\n .option('--use-claude-flow', 'Use claude-flow for deep analysis')\n .option('--no-moc', 'Skip MOC (Map of Content) generation')\n .option('--no-link-original', 'Do not link back to original docs')\n .option('--max-depth <n>', 'Maximum analysis depth', '3')\n .option('--dry-run', 'Show what would be done without making changes')\n .option('-v, --verbose', 'Verbose output')\n .action(async (options) => {\n const spinner = ora('Analyzing documentation...').start();\n\n try {\n const projectRoot = validateProjectRoot(options.path);\n const sourceDir = options.source;\n const targetDir = options.target;\n\n // Check source exists\n if (!existsSync(join(projectRoot, sourceDir))) {\n spinner.fail(`Source directory not found: ${sourceDir}`);\n console.log(chalk.gray(' Specify source with --source <dir>'));\n process.exit(1);\n }\n\n // Check if target already exists\n if (existsSync(join(projectRoot, targetDir)) && !options.dryRun) {\n spinner.warn(`Target directory exists: ${targetDir}`);\n console.log(chalk.yellow(' Files may be overwritten. Use --dry-run to preview.'));\n }\n\n if (options.dryRun) {\n spinner.text = 'Analyzing documentation (dry run)...';\n }\n\n if (options.useClaudeFlow) {\n spinner.text = 'Analyzing with claude-flow (deep analysis)...';\n }\n\n const result = await analyzeDocs({\n sourceDir,\n targetDir,\n projectRoot,\n useClaudeFlow: options.useClaudeFlow,\n createMOC: options.moc !== false,\n linkOriginal: options.linkOriginal !== false,\n maxDepth: parseInt(options.maxDepth, 10),\n dryRun: options.dryRun,\n verbose: options.verbose,\n });\n\n if (result.success) {\n if (options.dryRun) {\n spinner.succeed('Dry run complete!');\n } else {\n spinner.succeed('Documentation analyzed and migrated!');\n }\n } else {\n spinner.warn('Analysis completed with errors');\n }\n\n // Display results\n console.log();\n console.log(chalk.cyan.bold(' Analysis Results'));\n console.log(chalk.gray(' ─────────────────────────────────────'));\n console.log();\n console.log(chalk.white(' Summary:'));\n console.log(chalk.gray(` Source: ${sourceDir}/`));\n console.log(chalk.gray(` Target: ${targetDir}/`));\n console.log(chalk.green(` Files analyzed: ${result.filesAnalyzed}`));\n console.log(chalk.green(` Files created: ${result.filesCreated}`));\n console.log(chalk.blue(` MOC files: ${result.mocFilesCreated}`));\n\n // Category breakdown\n if (result.structure.size > 0) {\n console.log();\n console.log(chalk.white(' Categories:'));\n for (const [category, docs] of result.structure) {\n console.log(chalk.cyan(` ${category.padEnd(15)}`), chalk.gray(`${docs.length} docs`));\n }\n }\n\n // Show sample analyzed documents\n if (result.analyzed.length > 0 && options.verbose) {\n console.log();\n console.log(chalk.white(' Sample documents:'));\n result.analyzed.slice(0, 5).forEach(doc => {\n console.log(chalk.gray(` ${doc.originalPath}`));\n console.log(chalk.cyan(` → ${doc.newPath}`) + chalk.gray(` [${doc.type}]`));\n if (doc.tags.length > 0) {\n console.log(chalk.gray(` tags: ${doc.tags.slice(0, 5).map(t => `#${t}`).join(' ')}`));\n }\n });\n if (result.analyzed.length > 5) {\n console.log(chalk.gray(` ... and ${result.analyzed.length - 5} more`));\n }\n }\n\n // Show errors\n if (result.errors.length > 0) {\n console.log();\n console.log(chalk.red(' Errors:'));\n result.errors.slice(0, 5).forEach(err => {\n console.log(chalk.gray(` - ${err}`));\n });\n if (result.errors.length > 5) {\n console.log(chalk.gray(` ... and ${result.errors.length - 5} more`));\n }\n }\n\n // Research needed summary\n const researchDocs = result.analyzed.filter(d => d.researchNeeded.length > 0);\n const todoDocs = result.analyzed.filter(d => d.todos.length > 0);\n\n if (researchDocs.length > 0 \|\| todoDocs.length > 0) {\n console.log();\n console.log(chalk.yellow(' Attention Needed:'));\n if (researchDocs.length > 0) {\n console.log(chalk.yellow(` 📚 ${researchDocs.length} docs need research`));\n }\n if (todoDocs.length > 0) {\n console.log(chalk.yellow(` ✏️ ${todoDocs.length} docs have TODOs`));\n }\n }\n\n // Next steps\n if (!options.dryRun && result.filesCreated > 0) {\n console.log();\n console.log(chalk.cyan(' Next steps:'));\n console.log(chalk.white(` 1. Review ${targetDir}/MOC.md (Master Index)`));\n console.log(chalk.white(` 2. Check ${targetDir}/PRIMITIVES.md`));\n console.log(chalk.white(` 3. Run: kg graph --docs ${targetDir}`));\n console.log(chalk.white(` 4. Run: kg stats --docs ${targetDir}`));\n if (researchDocs.length > 0) {\n console.log(chalk.white(` 5. Address research items in flagged docs`));\n }\n }\n\n console.log();\n\n } catch (error) {\n spinner.fail('Analysis failed');\n console.error(chalk.red(String(error)));\n process.exit(1);\n }\n });\n\n // Deep analyze subcommand (uses claude-flow agents)\n command\n .command('deep')\n .description('Deep analysis using claude-flow agents for comprehensive knowledge extraction')\n .option('-p, --path <path>', 'Project root path', '.')\n .option('-s, --source <dir>', 'Source docs directory', 'docs')\n .option('-t, --target <dir>', 'Target directory', 'docs')\n .option('--agents <n>', 'Number of parallel agents', '3')\n .action(async (options) => {\n const spinner = ora('Initializing deep analysis with claude-flow...').start();\n\n try {\n const projectRoot = validateProjectRoot(options.path);\n const sourceDir = options.source;\n const targetDir = options.target;\n\n // Check source exists\n if (!existsSync(join(projectRoot, sourceDir))) {\n spinner.fail(`Source directory not found: ${sourceDir}`);\n process.exit(1);\n }\n\n spinner.text = 'Running claude-flow deep analysis...';\n\n // Run deep analysis with claude-flow\n const result = await analyzeDocs({\n sourceDir,\n targetDir,\n projectRoot,\n useClaudeFlow: true,\n createMOC: true,\n linkOriginal: true,\n maxDepth: 5,\n dryRun: false,\n verbose: true,\n });\n\n if (result.success) {\n spinner.succeed('Deep analysis complete!');\n } else {\n spinner.warn('Deep analysis completed with some errors');\n }\n\n console.log();\n console.log(chalk.cyan.bold(' Deep Analysis Results'));\n console.log(chalk.gray(' ─────────────────────────────────────'));\n console.log(chalk.green(` Documents analyzed: ${result.filesAnalyzed}`));\n console.log(chalk.green(` Knowledge docs: ${result.filesCreated}`));\n console.log(chalk.blue(` Index files (MOC): ${result.mocFilesCreated}`));\n console.log(chalk.gray(` Categories: ${result.structure.size}`));\n\n // Research summary\n const totalResearch = result.analyzed.reduce((sum, d) => sum + d.researchNeeded.length, 0);\n const totalTodos = result.analyzed.reduce((sum, d) => sum + d.todos.length, 0);\n\n console.log();\n console.log(chalk.white(' Knowledge extraction:'));\n console.log(chalk.cyan(` Research areas: ${totalResearch}`));\n console.log(chalk.cyan(` TODOs found: ${totalTodos}`));\n console.log(chalk.cyan(` Concepts: ${result.analyzed.reduce((sum, d) => sum + d.concepts.length, 0)}`));\n console.log(chalk.cyan(` Cross-refs: ${result.analyzed.reduce((sum, d) => sum + d.related.length, 0)}`));\n\n console.log();\n console.log(chalk.white(` Output: ${targetDir}/`));\n console.log(chalk.gray(` MOC.md Master index`));\n console.log(chalk.gray(` PRIMITIVES.md Core building blocks`));\n console.log(chalk.gray(` /\\_MOC.md Category indexes`));\n console.log();\n\n } catch (error) {\n spinner.fail('Deep analysis failed');\n console.error(chalk.red(String(error)));\n process.exit(1);\n }\n });\n\n // Report subcommand\n command\n .command('report')\n .description('Generate analysis report without creating files')\n .option('-p, --path <path>', 'Project root path', '.')\n .option('-s, --source <dir>', 'Source docs directory', 'docs')\n .option('--json', 'Output as JSON')\n .action(async (options) => {\n const spinner = ora('Generating analysis report...').start();\n\n try {\n const projectRoot = validateProjectRoot(options.path);\n const sourceDir = options.source;\n\n if (!existsSync(join(projectRoot, sourceDir))) {\n spinner.fail(`Source directory not found: ${sourceDir}`);\n process.exit(1);\n }\n\n const result = await analyzeDocs({\n sourceDir,\n targetDir: 'docs',\n projectRoot,\n useClaudeFlow: false,\n createMOC: false,\n linkOriginal: false,\n dryRun: true,\n verbose: false,\n });\n\n spinner.succeed('Report generated!');\n\n if (options.json) {\n // JSON output\n const report = {\n summary: {\n totalDocs: result.filesAnalyzed,\n categories: Object.fromEntries(result.structure),\n },\n documents: result.analyzed.map(d => ({\n original: d.originalPath,\n target: d.newPath,\n type: d.type,\n category: d.category,\n tags: d.tags,\n concepts: d.concepts,\n researchNeeded: d.researchNeeded,\n todos: d.todos,\n })),\n researchAreas: result.analyzed\n .flatMap(d => d.researchNeeded.map(r => ({ doc: d.title, area: r }))),\n todos: result.analyzed\n .flatMap(d => d.todos.map(t => ({ doc: d.title, todo: t }))),\n };\n console.log(JSON.stringify(report, null, 2));\n } else {\n // Human-readable output\n console.log();\n console.log(chalk.cyan.bold(' Documentation Analysis Report'));\n console.log(chalk.gray(' ─────────────────────────────────────'));\n console.log();\n console.log(chalk.white(` Total documents: ${result.filesAnalyzed}`));\n console.log();\n\n // Type breakdown\n const byType = new Map<string, number>();\n result.analyzed.forEach(d => {\n byType.set(d.type, (byType.get(d.type) \|\| 0) + 1);\n });\n\n console.log(chalk.white(' By Type:'));\n for (const [type, count] of byType) {\n const bar = '█'.repeat(Math.ceil(count / result.filesAnalyzed * 20));\n console.log(chalk.cyan(` ${type.padEnd(12)} ${bar} ${count}`));\n }\n console.log();\n\n // Category breakdown\n console.log(chalk.white(' By Category:'));\n for (const [category, docs] of result.structure) {\n const bar = '█'.repeat(Math.ceil(docs.length / result.filesAnalyzed * 20));\n console.log(chalk.cyan(` ${category.padEnd(12)} ${bar} ${docs.length}`));\n }\n console.log();\n\n // Issues\n const withResearch = result.analyzed.filter(d => d.researchNeeded.length > 0);\n const withTodos = result.analyzed.filter(d => d.todos.length > 0);\n\n console.log(chalk.white(' Areas Needing Attention:'));\n console.log(chalk.yellow(` 📚 Research needed: ${withResearch.length} docs`));\n console.log(chalk.yellow(` ✏️ With TODOs: ${withTodos.length} docs`));\n console.log();\n\n // Top research areas\n if (withResearch.length > 0) {\n console.log(chalk.white(' Top Research Areas:'));\n withResearch.slice(0, 5).forEach(d => {\n console.log(chalk.gray(` ${d.title}:`));\n d.researchNeeded.slice(0, 2).forEach(r => {\n console.log(chalk.yellow(` - ${r.slice(0, 60)}...`));\n });\n });\n console.log();\n }\n\n console.log(chalk.cyan(' Run `kg analyze` to migrate documentation'));\n console.log();\n }\n\n } catch (error) {\n spinner.fail('Report generation failed');\n console.error(chalk.red(String(error)));\n process.exit(1);\n }\n });\n\n return 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1	+ {"version":3,"file":"analyze.js","sources":["../../../src/cli/commands/analyze.ts"],"sourcesContent":["/*\n Analyze Command\n \n Advanced documentation analyzer using claude-flow for deep analysis\n * and creating proper knowledge graph documentation structure.\n /\n\nimport { Command } from 'commander';\nimport chalk from 'chalk';\nimport ora from 'ora';\nimport { existsSync } from 'fs';\nimport { join } from 'path';\nimport { analyzeDocs } from '../../generators/docs-analyzer.js';\nimport { validateProjectRoot } from '../../core/security.js';\n\n/\n Create analyze command\n /\nexport function createAnalyzeCommand(): Command {\n const command = new Command('analyze');\n\n command\n .description('Analyze and migrate docs to knowledge graph structure')\n .option('-p, --path <path>', 'Project root path', '.')\n .option('-s, --source <dir>', 'Source docs directory', 'docs')\n .option('-t, --target <dir>', 'Target directory', 'docs')\n .option('--use-claude-flow', 'Use claude-flow for deep analysis')\n .option('--no-moc', 'Skip MOC (Map of Content) generation')\n .option('--no-link-original', 'Do not link back to original docs')\n .option('--max-depth <n>', 'Maximum analysis depth', '3')\n .option('--dry-run', 'Show what would be done without making changes')\n .option('-v, --verbose', 'Verbose output')\n .action(async (options) => {\n const spinner = ora('Analyzing documentation...').start();\n\n try {\n const projectRoot = validateProjectRoot(options.path);\n const sourceDir = options.source;\n const targetDir = options.target;\n\n // Check source exists\n if (!existsSync(join(projectRoot, sourceDir))) {\n spinner.fail(`Source directory not found: ${sourceDir}`);\n console.log(chalk.gray(' Specify source with --source <dir>'));\n process.exit(1);\n }\n\n // Check if target already exists\n if (existsSync(join(projectRoot, targetDir)) && !options.dryRun) {\n spinner.warn(`Target directory exists: ${targetDir}`);\n console.log(chalk.yellow(' Files may be overwritten. Use --dry-run to preview.'));\n }\n\n if (options.dryRun) {\n spinner.text = 'Analyzing documentation (dry run)...';\n }\n\n if (options.useClaudeFlow) {\n spinner.text = 'Analyzing with claude-flow (deep analysis)...';\n }\n\n const result = await analyzeDocs({\n sourceDir,\n targetDir,\n projectRoot,\n useClaudeFlow: options.useClaudeFlow,\n createMOC: options.moc !== false,\n linkOriginal: options.linkOriginal !== false,\n maxDepth: parseInt(options.maxDepth, 10),\n dryRun: options.dryRun,\n verbose: options.verbose,\n });\n\n if (result.success) {\n if (options.dryRun) {\n spinner.succeed('Dry run complete!');\n } else {\n spinner.succeed('Documentation analyzed and migrated!');\n }\n } else {\n spinner.warn('Analysis completed with errors');\n }\n\n // Display results\n console.log();\n console.log(chalk.cyan.bold(' Analysis Results'));\n console.log(chalk.gray(' ─────────────────────────────────────'));\n console.log();\n console.log(chalk.white(' Summary:'));\n console.log(chalk.gray(` Source: ${sourceDir}/`));\n console.log(chalk.gray(` Target: ${targetDir}/`));\n console.log(chalk.green(` Files analyzed: ${result.filesAnalyzed}`));\n console.log(chalk.green(` Files created: ${result.filesCreated}`));\n console.log(chalk.blue(` MOC files: ${result.mocFilesCreated}`));\n\n // Category breakdown\n if (result.structure.size > 0) {\n console.log();\n console.log(chalk.white(' Categories:'));\n for (const [category, docs] of result.structure) {\n console.log(chalk.cyan(` ${category.padEnd(15)}`), chalk.gray(`${docs.length} docs`));\n }\n }\n\n // Show sample analyzed documents\n if (result.analyzed.length > 0 && options.verbose) {\n console.log();\n console.log(chalk.white(' Sample documents:'));\n result.analyzed.slice(0, 5).forEach(doc => {\n console.log(chalk.gray(` ${doc.originalPath}`));\n console.log(chalk.cyan(` → ${doc.newPath}`) + chalk.gray(` [${doc.type}]`));\n if (doc.tags.length > 0) {\n console.log(chalk.gray(` tags: ${doc.tags.slice(0, 5).map(t => `#${t}`).join(' ')}`));\n }\n });\n if (result.analyzed.length > 5) {\n console.log(chalk.gray(` ... and ${result.analyzed.length - 5} more`));\n }\n }\n\n // Show errors\n if (result.errors.length > 0) {\n console.log();\n console.log(chalk.red(' Errors:'));\n result.errors.slice(0, 5).forEach(err => {\n console.log(chalk.gray(` - ${err}`));\n });\n if (result.errors.length > 5) {\n console.log(chalk.gray(` ... and ${result.errors.length - 5} more`));\n }\n }\n\n // Research needed summary\n const researchDocs = result.analyzed.filter(d => d.researchNeeded.length > 0);\n const todoDocs = result.analyzed.filter(d => d.todos.length > 0);\n\n if (researchDocs.length > 0 \|\| todoDocs.length > 0) {\n console.log();\n console.log(chalk.yellow(' Attention Needed:'));\n if (researchDocs.length > 0) {\n console.log(chalk.yellow(` 📚 ${researchDocs.length} docs need research`));\n }\n if (todoDocs.length > 0) {\n console.log(chalk.yellow(` ✏️ ${todoDocs.length} docs have TODOs`));\n }\n }\n\n // Next steps\n if (!options.dryRun && result.filesCreated > 0) {\n console.log();\n console.log(chalk.cyan(' Next steps:'));\n console.log(chalk.white(` 1. Review ${targetDir}/MOC.md (Master Index)`));\n console.log(chalk.white(` 2. Check ${targetDir}/PRIMITIVES.md`));\n console.log(chalk.white(` 3. Run: kg graph --docs ${targetDir}`));\n console.log(chalk.white(` 4. Run: kg stats --docs ${targetDir}`));\n if (researchDocs.length > 0) {\n console.log(chalk.white(` 5. Address research items in flagged docs`));\n }\n }\n\n console.log();\n\n } catch (error) {\n spinner.fail('Analysis failed');\n console.error(chalk.red(String(error)));\n process.exit(1);\n }\n });\n\n // Deep analyze subcommand (uses claude-flow agents)\n command\n .command('deep')\n .description('Deep analysis using claude-flow agents for comprehensive knowledge extraction')\n .option('-p, --path <path>', 'Project root path', '.')\n .option('-s, --source <dir>', 'Source docs directory', 'docs')\n .option('-t, --target <dir>', 'Target directory', 'docs')\n .option('--agents <n>', 'Number of parallel agents', '3')\n .action(async (options) => {\n const spinner = ora('Initializing deep analysis with claude-flow...').start();\n\n try {\n const projectRoot = validateProjectRoot(options.path);\n const sourceDir = options.source;\n const targetDir = options.target;\n\n // Check source exists\n if (!existsSync(join(projectRoot, sourceDir))) {\n spinner.fail(`Source directory not found: ${sourceDir}`);\n process.exit(1);\n }\n\n spinner.text = 'Running claude-flow deep analysis...';\n\n // Run deep analysis with claude-flow\n const result = await analyzeDocs({\n sourceDir,\n targetDir,\n projectRoot,\n useClaudeFlow: true,\n createMOC: true,\n linkOriginal: true,\n maxDepth: 5,\n dryRun: false,\n verbose: true,\n });\n\n if (result.success) {\n spinner.succeed('Deep analysis complete!');\n } else {\n spinner.warn('Deep analysis completed with some errors');\n }\n\n console.log();\n console.log(chalk.cyan.bold(' Deep Analysis Results'));\n console.log(chalk.gray(' ─────────────────────────────────────'));\n console.log(chalk.green(` Documents analyzed: ${result.filesAnalyzed}`));\n console.log(chalk.green(` Knowledge docs: ${result.filesCreated}`));\n console.log(chalk.blue(` Index files (MOC): ${result.mocFilesCreated}`));\n console.log(chalk.gray(` Categories: ${result.structure.size}`));\n\n // Research summary\n const totalResearch = result.analyzed.reduce((sum, d) => sum + d.researchNeeded.length, 0);\n const totalTodos = result.analyzed.reduce((sum, d) => sum + d.todos.length, 0);\n\n console.log();\n console.log(chalk.white(' Knowledge extraction:'));\n console.log(chalk.cyan(` Research areas: ${totalResearch}`));\n console.log(chalk.cyan(` TODOs found: ${totalTodos}`));\n console.log(chalk.cyan(` Concepts: ${result.analyzed.reduce((sum, d) => sum + d.concepts.length, 0)}`));\n console.log(chalk.cyan(` Cross-refs: ${result.analyzed.reduce((sum, d) => sum + d.related.length, 0)}`));\n\n console.log();\n console.log(chalk.white(` Output: ${targetDir}/`));\n console.log(chalk.gray(` MOC.md Master index`));\n console.log(chalk.gray(` PRIMITIVES.md Core building blocks`));\n console.log(chalk.gray(` /\\_MOC.md Category indexes`));\n console.log();\n\n } catch (error) {\n spinner.fail('Deep analysis failed');\n console.error(chalk.red(String(error)));\n process.exit(1);\n }\n });\n\n // Migrate subcommand - implements analysis recommendations\n command\n .command('migrate')\n .description('Implement analysis recommendations using AI agents to fill gaps, answer questions, and build connections')\n .argument('[path]', 'Project root path', '.')\n .option('-d, --docs <dir>', 'Documentation directory', 'docs')\n .option('-a, --analysis <dir>', 'Analysis directory (relative to docs)', 'analysis')\n .option('--max-agents <n>', 'Maximum parallel agents', '8')\n .option('--dry-run', 'Preview changes without making them')\n .option('--use-vector', 'Use vector search for context retrieval')\n .option('-v, --verbose', 'Verbose output')\n .action(async (path: string, options) => {\n const spinner = ora('Initializing migration orchestration...').start();\n\n try {\n const projectRoot = validateProjectRoot(path);\n const docsDir = options.docs;\n const analysisDir = options.analysis;\n const dryRun = options.dryRun ?? false;\n const verbose = options.verbose ?? false;\n\n // Check analysis directory exists\n const analysisPath = join(projectRoot, docsDir, analysisDir);\n if (!existsSync(analysisPath)) {\n spinner.fail(`Analysis directory not found: ${analysisPath}`);\n console.log(chalk.gray(' Run \"kg cultivate --deep-analysis\" first to generate analysis'));\n process.exit(1);\n }\n\n // Check for required analysis files\n const requiredFiles = ['documentation-gaps.md', 'research-questions.md'];\n const missingFiles = requiredFiles.filter(f => !existsSync(join(analysisPath, f)));\n if (missingFiles.length > 0) {\n spinner.warn(`Missing analysis files: ${missingFiles.join(', ')}`);\n console.log(chalk.gray(' Run \"kg cultivate --deep-analysis\" to generate complete analysis'));\n }\n\n // Import and create orchestrator\n const { MigrationOrchestrator } = await import('../../cultivation/migration-orchestrator.js');\n const orchestrator = new MigrationOrchestrator({\n projectRoot,\n docsPath: docsDir,\n analysisDir,\n verbose,\n dryRun,\n useVectorSearch: options.useVector ?? false,\n maxAgents: parseInt(options.maxAgents \|\| '8', 10)\n });\n\n // Check availability\n const status = await orchestrator.getAvailabilityStatus();\n if (!status.available) {\n spinner.fail('Migration unavailable');\n console.log(chalk.red(` ${status.reason}`));\n console.log(chalk.gray(' Set GOOGLE_GEMINI_API_KEY or ANTHROPIC_API_KEY'));\n process.exit(1);\n }\n\n spinner.text = `Running migration (${status.reason})...`;\n if (dryRun) {\n spinner.text = `Running migration dry run (${status.reason})...`;\n }\n\n // Run migration\n const result = await orchestrator.migrate();\n\n if (result.success) {\n if (dryRun) {\n spinner.succeed('Migration dry run complete!');\n } else {\n spinner.succeed('Migration complete!');\n }\n } else {\n spinner.warn('Migration completed with errors');\n }\n\n // Display results\n console.log();\n console.log(chalk.cyan.bold(' Migration Results'));\n console.log(chalk.gray(' ─────────────────────────────────────'));\n console.log();\n\n if (dryRun) {\n console.log(chalk.yellow(' [DRY RUN] No changes were made\\n'));\n }\n\n console.log(chalk.white(' Summary:'));\n console.log(chalk.gray(` Analysis dir: ${docsDir}/${analysisDir}/`));\n console.log(chalk.green(` Agents used: ${result.agentsUsed}`));\n console.log(chalk.green(` Documents created: ${result.documentsCreated}`));\n console.log(chalk.blue(` Documents updated: ${result.documentsUpdated}`));\n console.log(chalk.cyan(` Gaps filled: ${result.gapsFilled}`));\n console.log(chalk.cyan(` Questions answered: ${result.questionsAnswered}`));\n console.log(chalk.cyan(` Connections added: ${result.connectionsAdded}`));\n console.log(chalk.gray(` Duration: ${(result.duration / 1000).toFixed(1)}s`));\n\n // Show warnings\n if (result.warnings.length > 0) {\n console.log();\n console.log(chalk.yellow(' Warnings:'));\n result.warnings.slice(0, 5).forEach(w => {\n console.log(chalk.gray(` - ${w}`));\n });\n if (result.warnings.length > 5) {\n console.log(chalk.gray(` ... and ${result.warnings.length - 5} more`));\n }\n }\n\n // Show errors\n if (result.errors.length > 0) {\n console.log();\n console.log(chalk.red(' Errors:'));\n result.errors.slice(0, 5).forEach(e => {\n console.log(chalk.gray(` - ${e}`));\n });\n if (result.errors.length > 5) {\n console.log(chalk.gray(` ... and ${result.errors.length - 5} more`));\n }\n }\n\n // Next steps\n if (!dryRun && result.documentsCreated > 0) {\n console.log();\n console.log(chalk.cyan(' Next steps:'));\n console.log(chalk.white(` 1. Review generated documents in ${docsDir}/`));\n console.log(chalk.white(` 2. Check ${docsDir}/${analysisDir}/ for summaries`));\n console.log(chalk.white(` 3. Run: kg graph --docs ${docsDir}`));\n console.log(chalk.white(` 4. Run: kg stats --docs ${docsDir}`));\n }\n\n console.log();\n\n } catch (error) {\n spinner.fail('Migration failed');\n console.error(chalk.red(String(error)));\n process.exit(1);\n }\n });\n\n // Report subcommand\n command\n .command('report')\n .description('Generate analysis report without creating files')\n .option('-p, --path <path>', 'Project root path', '.')\n .option('-s, --source <dir>', 'Source docs directory', 'docs')\n .option('--json', 'Output as JSON')\n .action(async (options) => {\n const spinner = ora('Generating analysis report...').start();\n\n try {\n const projectRoot = validateProjectRoot(options.path);\n const sourceDir = options.source;\n\n if (!existsSync(join(projectRoot, sourceDir))) {\n spinner.fail(`Source directory not found: ${sourceDir}`);\n process.exit(1);\n }\n\n const result = await analyzeDocs({\n sourceDir,\n targetDir: 'docs',\n projectRoot,\n useClaudeFlow: false,\n createMOC: false,\n linkOriginal: false,\n dryRun: true,\n verbose: false,\n 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breakdown\n const byType = new Map<string, number>();\n result.analyzed.forEach(d => {\n byType.set(d.type, (byType.get(d.type) \|\| 0) + 1);\n });\n\n console.log(chalk.white(' By Type:'));\n for (const [type, count] of byType) {\n const bar = '█'.repeat(Math.ceil(count / result.filesAnalyzed * 20));\n console.log(chalk.cyan(` ${type.padEnd(12)} ${bar} ${count}`));\n }\n console.log();\n\n // Category breakdown\n console.log(chalk.white(' By Category:'));\n for (const [category, docs] of result.structure) {\n const bar = '█'.repeat(Math.ceil(docs.length / result.filesAnalyzed * 20));\n console.log(chalk.cyan(` ${category.padEnd(12)} ${bar} ${docs.length}`));\n }\n console.log();\n\n // Issues\n const withResearch = result.analyzed.filter(d => d.researchNeeded.length > 0);\n const withTodos = result.analyzed.filter(d => d.todos.length > 0);\n\n console.log(chalk.white(' Areas Needing Attention:'));\n console.log(chalk.yellow(` 📚 Research needed: ${withResearch.length} docs`));\n console.log(chalk.yellow(` ✏️ With TODOs: ${withTodos.length} docs`));\n console.log();\n\n // Top research areas\n if (withResearch.length > 0) {\n console.log(chalk.white(' Top Research Areas:'));\n withResearch.slice(0, 5).forEach(d => {\n console.log(chalk.gray(` ${d.title}:`));\n d.researchNeeded.slice(0, 2).forEach(r => {\n console.log(chalk.yellow(` - ${r.slice(0, 60)}...`));\n });\n });\n console.log();\n }\n\n console.log(chalk.cyan(' Run `kg analyze` to migrate documentation'));\n console.log();\n }\n\n } catch (error) {\n spinner.fail('Report generation failed');\n console.error(chalk.red(String(error)));\n process.exit(1);\n }\n });\n\n return 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package/dist/cultivation/deep-analyzer.d.ts CHANGED Viewed

@@ -1,11 +1,13 @@
 /**
- * DeepAnalyzer - Deep Codebase Analysis
+ * DeepAnalyzer - Documentation Cultivation & Knowledge Graph Enhancement
  *
- * Provides comprehensive codebase analysis using:
- * - Claude CLI (`claude -p`) when running outside Claude Code
- * - Direct Anthropic API when ANTHROPIC_API_KEY is available
- * - Google Gemini API when GOOGLE_AI_API_KEY is available (fallback)
- * - Clear error messaging when no option is available
+ * Analyzes existing documentation to:
+ * - Understand the vision and requirements described
+ * - Identify documentation gaps and unclear areas
+ * - Guide the documentation process with research questions
+ * - Build knowledge graph connections
+ *
+ * This is NOT for code analysis - use analyze-codebase for that.
  *
  * @module cultivation/deep-analyzer
  */
@@ -21,11 +23,9 @@ export interface DeepAnalyzerOptions {
     outputDir?: string;
     /** Enable verbose logging */
     verbose?: boolean;
-    /** Maximum agents to spawn */
-    maxAgents?: number;
-    /** Agent execution mode */
-    agentMode?: 'sequential' | 'parallel' | 'adaptive';
-    /** Timeout for each agent (ms) */
+    /** Maximum documents to analyze */
+    maxDocuments?: number;
+    /** Timeout for each analysis (ms) */
     agentTimeout?: number;
     /** Force use of API key even if CLI is available */
     forceApiKey?: boolean;
@@ -61,12 +61,13 @@ export interface DeepAnalysisResult {
     mode: 'cli' | 'anthropic' | 'gemini' | 'static';
 }
 /**
- * DeepAnalyzer - Deep codebase analysis with multiple execution modes
+ * DeepAnalyzer - Documentation cultivation with AI-powered analysis
  *
- * Supports multiple providers:
- * - Claude CLI (uses OAuth session, no API key needed)
- * - Anthropic API (requires ANTHROPIC_API_KEY)
- * - Google Gemini API (requires GOOGLE_AI_API_KEY or GEMINI_API_KEY)
+ * Reads existing markdown documentation and provides:
+ * - Vision synthesis from requirements
+ * - Gap analysis identifying missing documentation
+ * - Research questions for unclear areas
+ * - Knowledge graph connection suggestions
  *
  * @example
  * ```typescript
@@ -84,8 +85,7 @@ export declare class DeepAnalyzer {
     private docsPath;
     private outputDir;
     private verbose;
-    private maxAgents;
-    private agentMode;
+    private maxDocuments;
     private agentTimeout;
     private forceApiKey;
     private preferredProvider;
@@ -100,7 +100,6 @@ export declare class DeepAnalyzer {
     private hasAnthropicApiKey;
     /**
      * Check if Google AI / Gemini API key is available
-     * Supports: GOOGLE_AI_API_KEY, GOOGLE_GEMINI_API_KEY, GEMINI_API_KEY, GOOGLE_API_KEY
      */
     private hasGeminiApiKey;
     /**
@@ -113,10 +112,6 @@ export declare class DeepAnalyzer {
     private isCliAvailable;
     /**
      * Determine the best execution mode
-     *
-     * Priority: API keys > CLI (CLI often hangs in various contexts)
-     * - Prefer API when available for reliability
-     * - Fall back to CLI only when no API key is available
      */
     private detectExecutionMode;
     /**
@@ -130,6 +125,14 @@ export declare class DeepAnalyzer {
         available: boolean;
         reason: string;
     }>;
+    /**
+     * Scan documentation directory for markdown files
+     */
+    private scanDocumentation;
+    /**
+     * Read full content of key documents
+     */
+    private readKeyDocuments;
     /**
      * Run deep analysis
      */
@@ -139,13 +142,9 @@ export declare class DeepAnalyzer {
      */
     private executeAgent;
     /**
-     * Build context-aware prompt for analysis
+     * Build context-aware prompt for documentation cultivation
      */
     private buildPrompt;
-    /**
-     * Gather project context for analysis
-     */
-    private gatherProjectContext;
     /**
      * Run analysis using Claude CLI
      */

package/dist/cultivation/deep-analyzer.d.ts.map CHANGED Viewed

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