@weavelogic/knowledge-graph-agent 0.10.2 → 0.10.4

package/dist/cli/commands/cultivate.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cultivate.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/cultivate.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAgCpC;;GAEG;AACH,wBAAgB,sBAAsB,IAAI,OAAO,CA4OhD"}
+{"version":3,"file":"cultivate.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/cultivate.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAgCpC;;GAEG;AACH,wBAAgB,sBAAsB,IAAI,OAAO,CA8PhD"}

package/dist/cli/commands/cultivate.js

@@ -121,32 +121,52 @@ function createCultivateCommand() {
         console.log("");
       }
       if (tasks.deepAnalysis) {
-        console.log(chalk.cyan("🧠 Running deep analysis with claude-flow...\n"));
-        const hasClaudeFlow = await checkClaudeFlowAvailable();
-        if (!hasClaudeFlow) {
-          console.log(chalk.yellow("  ⚠️  claude-flow not available"));
-          console.log(chalk.gray("  Install with: npm install -g claude-flow"));
-          result.warnings.push("claude-flow not available for deep analysis");
+        console.log(chalk.cyan("🧠 Running deep analysis...\n"));
+        const { DeepAnalyzer } = await import("../../cultivation/deep-analyzer.js");
+        const analyzer = new DeepAnalyzer({
+          projectRoot,
+          docsPath,
+          verbose
+        });
+        const availability = await analyzer.getAvailabilityStatus();
+        if (!availability.available) {
+          console.log(chalk.yellow("  ⚠️  Deep analysis unavailable"));
+          console.log(chalk.gray(`  ${availability.reason}`));
+          console.log("");
+          console.log(chalk.gray("  Options:"));
+          console.log(chalk.gray("  1. Run from a regular terminal (outside Claude Code)"));
+          console.log(chalk.gray("  2. Set ANTHROPIC_API_KEY environment variable"));
+          result.warnings.push(`Deep analysis unavailable: ${availability.reason}`);
         } else {
+          console.log(chalk.gray(`  Mode: ${availability.reason}`));
           if (dryRun) {
-            console.log(chalk.yellow("  [DRY RUN] Would spawn claude-flow agents:"));
-            console.log("    - Researcher: Analyze codebase patterns");
-            console.log("    - Analyst: Identify architectural decisions");
-            console.log("    - Coder: Detect implementation patterns");
-            console.log("    - Tester: Analyze testing coverage");
+            console.log(chalk.yellow("\n  [DRY RUN] Would run analysis agents:"));
+            console.log("    - Pattern Researcher: Analyze codebase architecture");
+            console.log("    - Code Analyst: Identify quality issues");
+            console.log("    - Implementation Reviewer: Review code patterns");
+            console.log("    - Test Analyzer: Analyze test coverage");
           } else {
             try {
-              const { DeepAnalyzer } = await import("../../cultivation/deep-analyzer.js");
-              const analyzer = new DeepAnalyzer({
-                projectRoot,
-                docsPath,
-                verbose
-              });
               const deepResult = await analyzer.analyze();
-              console.log(`  ${chalk.green("✓")} Deep analysis complete`);
-              console.log(`    Agents spawned: ${deepResult.agentsSpawned}`);
-              console.log(`    Insights generated: ${deepResult.insightsCount}`);
-              console.log(`    Documentation created: ${deepResult.documentsCreated}`);
+              if (deepResult.success) {
+                console.log(`
+  ${chalk.green("✓")} Deep analysis complete`);
+                console.log(`    Agents spawned: ${deepResult.agentsSpawned}`);
+                console.log(`    Insights generated: ${deepResult.insightsCount}`);
+                console.log(`    Documentation created: ${deepResult.documentsCreated}`);
+                console.log(`    Mode: ${deepResult.mode}`);
+              } else {
+                console.log(`
+  ${chalk.yellow("⚠")} Deep analysis completed with issues`);
+                console.log(`    Agents spawned: ${deepResult.agentsSpawned}`);
+                console.log(`    Insights generated: ${deepResult.insightsCount}`);
+                if (deepResult.errors.length > 0) {
+                  for (const err of deepResult.errors.slice(0, 3)) {
+                    console.log(chalk.gray(`    - ${err}`));
+                  }
+                }
+                result.warnings.push(...deepResult.errors);
+              }
             } catch (error) {
               result.errors.push(`Deep analysis failed: ${error instanceof Error ? error.message : String(error)}`);
               console.log(chalk.red(`  ✗ Deep analysis failed: ${error instanceof Error ? error.message : String(error)}`));
@@ -239,20 +259,6 @@ function displaySummary(result, dryRun) {
     console.log(chalk.gray("\nRun without --dry-run to apply changes\n"));
   }
 }
-async function checkClaudeFlowAvailable() {
-  const { execSync } = await import("child_process");
-  try {
-    execSync("claude-flow --version", { stdio: "pipe", timeout: 5e3 });
-    return true;
-  } catch {
-  }
-  try {
-    execSync("npx claude-flow --version", { stdio: "pipe", timeout: 3e4 });
-    return true;
-  } catch {
-    return false;
-  }
-}
 export {
   createCultivateCommand
 };

package/dist/cli/commands/cultivate.js.map

@@ -1 +1 @@
-{"version":3,"file":"cultivate.js","sources":["../../../src/cli/commands/cultivate.ts"],"sourcesContent":["/**\n * Cultivate Command - Systematically enhance the knowledge graph\n *\n * This command provides cultivation tasks:\n * - Seed primitives from codebase analysis\n * - Deep analysis with claude-flow integration\n * - Graph enhancement and optimization\n *\n * @module cli/commands/cultivate\n */\n\nimport { Command } from 'commander';\nimport chalk from 'chalk';\nimport { resolve, join, relative } from 'path';\nimport { existsSync, mkdirSync, readFileSync, readdirSync, statSync } from 'fs';\nimport { SeedGenerator } from '../../cultivation/seed-generator.js';\nimport { ShadowCache, loadShadowCache } from '../../core/cache.js';\nimport type { CultivationOptions, Ecosystem, SeedAnalysis } from '../../cultivation/types.js';\n\n/**\n * Cultivation result\n */\ninterface CultivationResult {\n  success: boolean;\n  seed: {\n    created: number;\n    documents: Array<{ title: string; path: string; type: string }>;\n  };\n  analysis: {\n    filesProcessed: number;\n    dependenciesFound: number;\n    servicesFound: number;\n  };\n  cache: {\n    updated: number;\n    hits: number;\n    misses: number;\n  };\n  duration: number;\n  warnings: string[];\n  errors: string[];\n}\n\n/**\n * Create cultivate command\n */\nexport function createCultivateCommand(): Command {\n  return new Command('cultivate')\n    .description('Systematically cultivate and enhance the knowledge graph')\n    .argument('[path]', 'Directory to cultivate (defaults to current directory)', '.')\n    .option('--dry-run', 'Preview changes without executing', false)\n    .option('-d, --docs <path>', 'Documentation path', 'docs')\n    .option('-v, --verbose', 'Verbose output', false)\n    .option('--seed', 'Bootstrap vault with primitives from codebase analysis', false)\n    .option('--deep-analysis', 'Use claude-flow agents for deep analysis', false)\n    .option('--cache', 'Use shadow cache for incremental updates', true)\n    .option('--ecosystem <ecosystems>', 'Filter to specific ecosystems (comma-separated)', undefined)\n    .option('--include-dev', 'Include dev dependencies', false)\n    .option('--major-only', 'Only process major dependencies', false)\n    .option('--refresh-cache', 'Force refresh the shadow cache', false)\n    .action(async (targetPath: string, options: {\n      dryRun?: boolean;\n      docs?: string;\n      verbose?: boolean;\n      seed?: boolean;\n      deepAnalysis?: boolean;\n      cache?: boolean;\n      ecosystem?: string;\n      includeDev?: boolean;\n      majorOnly?: boolean;\n      refreshCache?: boolean;\n    }) => {\n      const projectRoot = resolve(targetPath);\n      const docsPath = options.docs || 'docs';\n      const verbose = options.verbose || false;\n      const dryRun = options.dryRun || false;\n\n      console.log(chalk.bold.green('\\n🌱 Knowledge Graph Cultivator\\n'));\n      console.log(`  Project: ${projectRoot}`);\n      console.log(`  Docs: ${docsPath}`);\n      if (dryRun) {\n        console.log(`  Mode: ${chalk.yellow('Dry Run')}`);\n      }\n      console.log('');\n\n      // Determine tasks\n      const tasks = {\n        seed: options.seed || false,\n        deepAnalysis: options.deepAnalysis || false,\n      };\n\n      // If no tasks selected, show help\n      if (!tasks.seed && !tasks.deepAnalysis) {\n        console.log(chalk.yellow('💡 No tasks selected. Use one or more of:'));\n        console.log('  --seed           Bootstrap vault with primitives from codebase');\n        console.log('  --deep-analysis  Use claude-flow for deep codebase analysis');\n        console.log('');\n        console.log(chalk.gray('Options:'));\n        console.log('  --dry-run        Preview without writing files');\n        console.log('  --cache          Use shadow cache for incremental updates (default: true)');\n        console.log('  --refresh-cache  Force refresh the shadow cache');\n        console.log('  --ecosystem      Filter to ecosystems (nodejs,python,rust,go,php,java)');\n        console.log('  --include-dev    Include dev dependencies');\n        console.log('  --major-only     Only process major dependencies');\n        console.log('');\n        console.log('Run \"kg cultivate --help\" for more options');\n        return;\n      }\n\n      const startTime = Date.now();\n      const result: CultivationResult = {\n        success: true,\n        seed: { created: 0, documents: [] },\n        analysis: { filesProcessed: 0, dependenciesFound: 0, servicesFound: 0 },\n        cache: { updated: 0, hits: 0, misses: 0 },\n        duration: 0,\n        warnings: [],\n        errors: [],\n      };\n\n      try {\n        // Initialize shadow cache\n        let cache: ShadowCache | undefined;\n        if (options.cache !== false) {\n          console.log(chalk.cyan('📦 Initializing shadow cache...'));\n          cache = await loadShadowCache(projectRoot);\n\n          if (options.refreshCache) {\n            cache.clear();\n            console.log(chalk.gray('  Cache cleared (refresh mode)'));\n          }\n\n          const stats = cache.getStats();\n          console.log(chalk.gray(`  Entries: ${stats.totalEntries}, Hit rate: ${(stats.hitRate * 100).toFixed(1)}%`));\n          console.log('');\n        }\n\n        // Task 1: Seed primitives\n        if (tasks.seed) {\n          console.log(chalk.cyan('🌱 Seeding primitives from codebase...\\n'));\n\n          // Parse ecosystem filter\n          let ecosystems: Ecosystem[] | undefined;\n          if (options.ecosystem) {\n            ecosystems = options.ecosystem.split(',').map(e => e.trim() as Ecosystem);\n            console.log(chalk.gray(`  Ecosystems: ${ecosystems.join(', ')}`));\n          }\n\n          // Create generator\n          const generator = await SeedGenerator.create(projectRoot, docsPath);\n\n          // Analyze\n          console.log(chalk.gray('  Analyzing codebase...'));\n          const analysis = await generator.analyze();\n\n          result.analysis = {\n            filesProcessed: analysis.metadata.filesScanned,\n            dependenciesFound: analysis.dependencies.length,\n            servicesFound: analysis.services.length,\n          };\n\n          // Display analysis\n          console.log(`\\n  ${chalk.bold('Analysis Results:')}`);\n          console.log(`    Languages: ${analysis.languages.join(', ') || 'none'}`);\n          console.log(`    Dependencies: ${analysis.dependencies.length}`);\n          console.log(`    Frameworks: ${analysis.frameworks.length}`);\n          console.log(`    Services: ${analysis.services.length}`);\n          console.log(`    Deployments: ${analysis.deployments.length}`);\n\n          if (verbose) {\n            displayDetailedAnalysis(analysis);\n          }\n\n          console.log('');\n\n          // Generate primitives\n          console.log(chalk.gray('  Generating primitive nodes...'));\n          const documents = await generator.generatePrimitives(analysis);\n\n          if (dryRun) {\n            console.log(`\\n  ${chalk.yellow('[DRY RUN]')} Would create ${documents.length} primitives:`);\n            for (const doc of documents.slice(0, 10)) {\n              console.log(`    - ${doc.frontmatter.type}: ${doc.title}`);\n            }\n            if (documents.length > 10) {\n              console.log(`    ... and ${documents.length - 10} more`);\n            }\n            result.seed.documents = documents.map(d => ({\n              title: d.title,\n              path: d.path,\n              type: d.frontmatter.type || 'unknown',\n            }));\n          } else {\n            const writeResult = await generator.writePrimitives(documents);\n            result.seed.created = writeResult.documentsGenerated.length;\n            result.seed.documents = writeResult.documentsGenerated;\n\n            console.log(`\\n  ${chalk.green('✓')} Created ${writeResult.documentsGenerated.length} primitives`);\n\n            if (writeResult.warnings.length > 0) {\n              result.warnings.push(...writeResult.warnings);\n              if (verbose) {\n                console.log(chalk.yellow(`  Warnings: ${writeResult.warnings.length}`));\n              }\n            }\n\n            if (writeResult.errors.length > 0) {\n              result.errors.push(...writeResult.errors);\n              console.log(chalk.red(`  Errors: ${writeResult.errors.length}`));\n            }\n          }\n\n          console.log('');\n        }\n\n        // Task 2: Deep Analysis with claude-flow\n        if (tasks.deepAnalysis) {\n          console.log(chalk.cyan('🧠 Running deep analysis with claude-flow...\\n'));\n\n          // Check if claude-flow is available\n          const hasClaudeFlow = await checkClaudeFlowAvailable();\n\n          if (!hasClaudeFlow) {\n            console.log(chalk.yellow('  ⚠️  claude-flow not available'));\n            console.log(chalk.gray('  Install with: npm install -g claude-flow'));\n            result.warnings.push('claude-flow not available for deep analysis');\n          } else {\n            if (dryRun) {\n              console.log(chalk.yellow('  [DRY RUN] Would spawn claude-flow agents:'));\n              console.log('    - Researcher: Analyze codebase patterns');\n              console.log('    - Analyst: Identify architectural decisions');\n              console.log('    - Coder: Detect implementation patterns');\n              console.log('    - Tester: Analyze testing coverage');\n            } else {\n              // Import and run DeepAnalyzer\n              try {\n                const { DeepAnalyzer } = await import('../../cultivation/deep-analyzer.js');\n                const analyzer = new DeepAnalyzer({\n                  projectRoot,\n                  docsPath,\n                  verbose,\n                });\n\n                const deepResult = await analyzer.analyze();\n\n                console.log(`  ${chalk.green('✓')} Deep analysis complete`);\n                console.log(`    Agents spawned: ${deepResult.agentsSpawned}`);\n                console.log(`    Insights generated: ${deepResult.insightsCount}`);\n                console.log(`    Documentation created: ${deepResult.documentsCreated}`);\n              } catch (error) {\n                result.errors.push(`Deep analysis failed: ${error instanceof Error ? error.message : String(error)}`);\n                console.log(chalk.red(`  ✗ Deep analysis failed: ${error instanceof Error ? error.message : String(error)}`));\n              }\n            }\n          }\n\n          console.log('');\n        }\n\n        // Update cache\n        if (cache) {\n          const stats = cache.getStats();\n          result.cache = {\n            updated: stats.totalEntries,\n            hits: stats.hitCount,\n            misses: stats.missCount,\n          };\n\n          await cache.save();\n        }\n\n        result.duration = Date.now() - startTime;\n        result.success = result.errors.length === 0;\n\n        // Final summary\n        displaySummary(result, dryRun);\n\n      } catch (error) {\n        console.error(chalk.red('\\n❌ Cultivation failed:'), error);\n        process.exit(1);\n      }\n    });\n}\n\n/**\n * Display detailed analysis output\n */\nfunction displayDetailedAnalysis(analysis: SeedAnalysis): void {\n  if (analysis.frameworks.length > 0) {\n    console.log(`\\n    ${chalk.gray('Frameworks:')}`);\n    for (const fw of analysis.frameworks) {\n      console.log(`      - ${fw.name} (${fw.ecosystem}) v${fw.version}`);\n    }\n  }\n\n  if (analysis.services.length > 0) {\n    console.log(`\\n    ${chalk.gray('Services:')}`);\n    for (const svc of analysis.services) {\n      console.log(`      - ${svc.name}: ${svc.type} (${svc.technology})`);\n    }\n  }\n\n  if (analysis.deployments.length > 0) {\n    console.log(`\\n    ${chalk.gray('Deployments:')}`);\n    for (const dep of analysis.deployments) {\n      console.log(`      - ${dep}`);\n    }\n  }\n}\n\n/**\n * Display cultivation summary\n */\nfunction displaySummary(result: CultivationResult, dryRun: boolean): void {\n  console.log(chalk.bold.blue('📊 Cultivation Summary\\n'));\n\n  if (dryRun) {\n    console.log(chalk.yellow('[DRY RUN] No changes were made\\n'));\n  }\n\n  console.log('  Analysis:');\n  console.log(`    Files processed: ${result.analysis.filesProcessed}`);\n  console.log(`    Dependencies: ${result.analysis.dependenciesFound}`);\n  console.log(`    Services: ${result.analysis.servicesFound}`);\n\n  if (result.seed.created > 0 || result.seed.documents.length > 0) {\n    console.log('\\n  Seed:');\n    console.log(`    Primitives ${dryRun ? 'would create' : 'created'}: ${dryRun ? result.seed.documents.length : result.seed.created}`);\n  }\n\n  if (result.cache.updated > 0) {\n    console.log('\\n  Cache:');\n    console.log(`    Entries: ${result.cache.updated}`);\n    const hitRate = result.cache.hits + result.cache.misses > 0\n      ? (result.cache.hits / (result.cache.hits + result.cache.misses) * 100).toFixed(1)\n      : 0;\n    console.log(`    Hit rate: ${hitRate}%`);\n  }\n\n  console.log(`\\n  Duration: ${(result.duration / 1000).toFixed(2)}s`);\n\n  if (result.warnings.length > 0) {\n    console.log(chalk.yellow(`\\n  ⚠️  Warnings: ${result.warnings.length}`));\n    for (const warning of result.warnings.slice(0, 5)) {\n      console.log(chalk.gray(`    - ${warning}`));\n    }\n  }\n\n  if (result.errors.length > 0) {\n    console.log(chalk.red(`\\n  ❌ Errors: ${result.errors.length}`));\n    for (const error of result.errors.slice(0, 5)) {\n      console.log(chalk.gray(`    - ${error}`));\n    }\n  }\n\n  if (result.success && !dryRun) {\n    console.log(chalk.bold.green('\\n✨ Cultivation complete!\\n'));\n  } else if (!result.success) {\n    console.log(chalk.yellow('\\n⚠️  Cultivation completed with errors\\n'));\n  } else {\n    console.log(chalk.gray('\\nRun without --dry-run to apply changes\\n'));\n  }\n}\n\n/**\n * Check if claude-flow is available\n * Checks for direct command first (globally installed), then falls back to npx\n */\nasync function checkClaudeFlowAvailable(): Promise<boolean> {\n  const { execSync } = await import('child_process');\n\n  // First try direct command (globally installed claude-flow)\n  try {\n    execSync('claude-flow --version', { stdio: 'pipe', timeout: 5000 });\n    return true;\n  } catch {\n    // Direct command not available, try npx\n  }\n\n  // Fall back to npx\n  try {\n    execSync('npx claude-flow --version', { stdio: 'pipe', timeout: 30000 });\n    return true;\n  } catch {\n    return false;\n  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+{"version":3,"file":"cultivate.js","sources":["../../../src/cli/commands/cultivate.ts"],"sourcesContent":["/**\n * Cultivate Command - Systematically enhance the knowledge graph\n *\n * This command provides cultivation tasks:\n * - Seed primitives from codebase analysis\n * - Deep analysis with claude-flow integration\n * - Graph enhancement and optimization\n *\n * @module cli/commands/cultivate\n */\n\nimport { Command } from 'commander';\nimport chalk from 'chalk';\nimport { resolve, join, relative } from 'path';\nimport { existsSync, mkdirSync, readFileSync, readdirSync, statSync } from 'fs';\nimport { SeedGenerator } from '../../cultivation/seed-generator.js';\nimport { ShadowCache, loadShadowCache } from '../../core/cache.js';\nimport type { CultivationOptions, Ecosystem, SeedAnalysis } from '../../cultivation/types.js';\n\n/**\n * Cultivation result\n */\ninterface CultivationResult {\n  success: boolean;\n  seed: {\n    created: number;\n    documents: Array<{ title: string; path: string; type: string }>;\n  };\n  analysis: {\n    filesProcessed: number;\n    dependenciesFound: number;\n    servicesFound: number;\n  };\n  cache: {\n    updated: number;\n    hits: number;\n    misses: number;\n  };\n  duration: number;\n  warnings: string[];\n  errors: string[];\n}\n\n/**\n * Create cultivate command\n */\nexport function createCultivateCommand(): Command {\n  return new Command('cultivate')\n    .description('Systematically cultivate and enhance the knowledge graph')\n    .argument('[path]', 'Directory to cultivate (defaults to current directory)', '.')\n    .option('--dry-run', 'Preview changes without executing', false)\n    .option('-d, --docs <path>', 'Documentation path', 'docs')\n    .option('-v, --verbose', 'Verbose output', false)\n    .option('--seed', 'Bootstrap vault with primitives from codebase analysis', false)\n    .option('--deep-analysis', 'Use claude-flow agents for deep analysis', false)\n    .option('--cache', 'Use shadow cache for incremental updates', true)\n    .option('--ecosystem <ecosystems>', 'Filter to specific ecosystems (comma-separated)', undefined)\n    .option('--include-dev', 'Include dev dependencies', false)\n    .option('--major-only', 'Only process major dependencies', false)\n    .option('--refresh-cache', 'Force refresh the shadow cache', false)\n    .action(async (targetPath: string, options: {\n      dryRun?: boolean;\n      docs?: string;\n      verbose?: boolean;\n      seed?: boolean;\n      deepAnalysis?: boolean;\n      cache?: boolean;\n      ecosystem?: string;\n      includeDev?: boolean;\n      majorOnly?: boolean;\n      refreshCache?: boolean;\n    }) => {\n      const projectRoot = resolve(targetPath);\n      const docsPath = options.docs || 'docs';\n      const verbose = options.verbose || false;\n      const dryRun = options.dryRun || false;\n\n      console.log(chalk.bold.green('\\n🌱 Knowledge Graph Cultivator\\n'));\n      console.log(`  Project: ${projectRoot}`);\n      console.log(`  Docs: ${docsPath}`);\n      if (dryRun) {\n        console.log(`  Mode: ${chalk.yellow('Dry Run')}`);\n      }\n      console.log('');\n\n      // Determine tasks\n      const tasks = {\n        seed: options.seed || false,\n        deepAnalysis: options.deepAnalysis || false,\n      };\n\n      // If no tasks selected, show help\n      if (!tasks.seed && !tasks.deepAnalysis) {\n        console.log(chalk.yellow('💡 No tasks selected. Use one or more of:'));\n        console.log('  --seed           Bootstrap vault with primitives from codebase');\n        console.log('  --deep-analysis  Use claude-flow for deep codebase analysis');\n        console.log('');\n        console.log(chalk.gray('Options:'));\n        console.log('  --dry-run        Preview without writing files');\n        console.log('  --cache          Use shadow cache for incremental updates (default: true)');\n        console.log('  --refresh-cache  Force refresh the shadow cache');\n        console.log('  --ecosystem      Filter to ecosystems (nodejs,python,rust,go,php,java)');\n        console.log('  --include-dev    Include dev dependencies');\n        console.log('  --major-only     Only process major dependencies');\n        console.log('');\n        console.log('Run \"kg cultivate --help\" for more options');\n        return;\n      }\n\n      const startTime = Date.now();\n      const result: CultivationResult = {\n        success: true,\n        seed: { created: 0, documents: [] },\n        analysis: { filesProcessed: 0, dependenciesFound: 0, servicesFound: 0 },\n        cache: { updated: 0, hits: 0, misses: 0 },\n        duration: 0,\n        warnings: [],\n        errors: [],\n      };\n\n      try {\n        // Initialize shadow cache\n        let cache: ShadowCache | undefined;\n        if (options.cache !== false) {\n          console.log(chalk.cyan('📦 Initializing shadow cache...'));\n          cache = await loadShadowCache(projectRoot);\n\n          if (options.refreshCache) {\n            cache.clear();\n            console.log(chalk.gray('  Cache cleared (refresh mode)'));\n          }\n\n          const stats = cache.getStats();\n          console.log(chalk.gray(`  Entries: ${stats.totalEntries}, Hit rate: ${(stats.hitRate * 100).toFixed(1)}%`));\n          console.log('');\n        }\n\n        // Task 1: Seed primitives\n        if (tasks.seed) {\n          console.log(chalk.cyan('🌱 Seeding primitives from codebase...\\n'));\n\n          // Parse ecosystem filter\n          let ecosystems: Ecosystem[] | undefined;\n          if (options.ecosystem) {\n            ecosystems = options.ecosystem.split(',').map(e => e.trim() as Ecosystem);\n            console.log(chalk.gray(`  Ecosystems: ${ecosystems.join(', ')}`));\n          }\n\n          // Create generator\n          const generator = await SeedGenerator.create(projectRoot, docsPath);\n\n          // Analyze\n          console.log(chalk.gray('  Analyzing codebase...'));\n          const analysis = await generator.analyze();\n\n          result.analysis = {\n            filesProcessed: analysis.metadata.filesScanned,\n            dependenciesFound: analysis.dependencies.length,\n            servicesFound: analysis.services.length,\n          };\n\n          // Display analysis\n          console.log(`\\n  ${chalk.bold('Analysis Results:')}`);\n          console.log(`    Languages: ${analysis.languages.join(', ') || 'none'}`);\n          console.log(`    Dependencies: ${analysis.dependencies.length}`);\n          console.log(`    Frameworks: ${analysis.frameworks.length}`);\n          console.log(`    Services: ${analysis.services.length}`);\n          console.log(`    Deployments: ${analysis.deployments.length}`);\n\n          if (verbose) {\n            displayDetailedAnalysis(analysis);\n          }\n\n          console.log('');\n\n          // Generate primitives\n          console.log(chalk.gray('  Generating primitive nodes...'));\n          const documents = await generator.generatePrimitives(analysis);\n\n          if (dryRun) {\n            console.log(`\\n  ${chalk.yellow('[DRY RUN]')} Would create ${documents.length} primitives:`);\n            for (const doc of documents.slice(0, 10)) {\n              console.log(`    - ${doc.frontmatter.type}: ${doc.title}`);\n            }\n            if (documents.length > 10) {\n              console.log(`    ... and ${documents.length - 10} more`);\n            }\n            result.seed.documents = documents.map(d => ({\n              title: d.title,\n              path: d.path,\n              type: d.frontmatter.type || 'unknown',\n            }));\n          } else {\n            const writeResult = await generator.writePrimitives(documents);\n            result.seed.created = writeResult.documentsGenerated.length;\n            result.seed.documents = writeResult.documentsGenerated;\n\n            console.log(`\\n  ${chalk.green('✓')} Created ${writeResult.documentsGenerated.length} primitives`);\n\n            if (writeResult.warnings.length > 0) {\n              result.warnings.push(...writeResult.warnings);\n              if (verbose) {\n                console.log(chalk.yellow(`  Warnings: ${writeResult.warnings.length}`));\n              }\n            }\n\n            if (writeResult.errors.length > 0) {\n              result.errors.push(...writeResult.errors);\n              console.log(chalk.red(`  Errors: ${writeResult.errors.length}`));\n            }\n          }\n\n          console.log('');\n        }\n\n        // Task 2: Deep Analysis\n        if (tasks.deepAnalysis) {\n          console.log(chalk.cyan('🧠 Running deep analysis...\\n'));\n\n          // Import and check DeepAnalyzer availability\n          const { DeepAnalyzer } = await import('../../cultivation/deep-analyzer.js');\n          const analyzer = new DeepAnalyzer({\n            projectRoot,\n            docsPath,\n            verbose,\n          });\n\n          const availability = await analyzer.getAvailabilityStatus();\n\n          if (!availability.available) {\n            console.log(chalk.yellow('  ⚠️  Deep analysis unavailable'));\n            console.log(chalk.gray(`  ${availability.reason}`));\n            console.log('');\n            console.log(chalk.gray('  Options:'));\n            console.log(chalk.gray('  1. Run from a regular terminal (outside Claude Code)'));\n            console.log(chalk.gray('  2. Set ANTHROPIC_API_KEY environment variable'));\n            result.warnings.push(`Deep analysis unavailable: ${availability.reason}`);\n          } else {\n            console.log(chalk.gray(`  Mode: ${availability.reason}`));\n\n            if (dryRun) {\n              console.log(chalk.yellow('\\n  [DRY RUN] Would run analysis agents:'));\n              console.log('    - Pattern Researcher: Analyze codebase architecture');\n              console.log('    - Code Analyst: Identify quality issues');\n              console.log('    - Implementation Reviewer: Review code patterns');\n              console.log('    - Test Analyzer: Analyze test coverage');\n            } else {\n              try {\n                const deepResult = await analyzer.analyze();\n\n                if (deepResult.success) {\n                  console.log(`\\n  ${chalk.green('✓')} Deep analysis complete`);\n                  console.log(`    Agents spawned: ${deepResult.agentsSpawned}`);\n                  console.log(`    Insights generated: ${deepResult.insightsCount}`);\n                  console.log(`    Documentation created: ${deepResult.documentsCreated}`);\n                  console.log(`    Mode: ${deepResult.mode}`);\n                } else {\n                  console.log(`\\n  ${chalk.yellow('⚠')} Deep analysis completed with issues`);\n                  console.log(`    Agents spawned: ${deepResult.agentsSpawned}`);\n                  console.log(`    Insights generated: ${deepResult.insightsCount}`);\n                  if (deepResult.errors.length > 0) {\n                    for (const err of deepResult.errors.slice(0, 3)) {\n                      console.log(chalk.gray(`    - ${err}`));\n                    }\n                  }\n                  result.warnings.push(...deepResult.errors);\n                }\n              } catch (error) {\n                result.errors.push(`Deep analysis failed: ${error instanceof Error ? error.message : String(error)}`);\n                console.log(chalk.red(`  ✗ Deep analysis failed: ${error instanceof Error ? error.message : String(error)}`));\n              }\n            }\n          }\n\n          console.log('');\n        }\n\n        // Update cache\n        if (cache) {\n          const stats = cache.getStats();\n          result.cache = {\n            updated: stats.totalEntries,\n            hits: stats.hitCount,\n            misses: stats.missCount,\n          };\n\n          await cache.save();\n        }\n\n        result.duration = Date.now() - startTime;\n        result.success = result.errors.length === 0;\n\n        // Final summary\n        displaySummary(result, dryRun);\n\n      } catch (error) {\n        console.error(chalk.red('\\n❌ Cultivation failed:'), error);\n        process.exit(1);\n      }\n    });\n}\n\n/**\n * Display detailed analysis output\n */\nfunction displayDetailedAnalysis(analysis: SeedAnalysis): void {\n  if (analysis.frameworks.length > 0) {\n    console.log(`\\n    ${chalk.gray('Frameworks:')}`);\n    for (const fw of analysis.frameworks) {\n      console.log(`      - ${fw.name} (${fw.ecosystem}) v${fw.version}`);\n    }\n  }\n\n  if (analysis.services.length > 0) {\n    console.log(`\\n    ${chalk.gray('Services:')}`);\n    for (const svc of analysis.services) {\n      console.log(`      - ${svc.name}: ${svc.type} (${svc.technology})`);\n    }\n  }\n\n  if (analysis.deployments.length > 0) {\n    console.log(`\\n    ${chalk.gray('Deployments:')}`);\n    for (const dep of analysis.deployments) {\n      console.log(`      - ${dep}`);\n    }\n  }\n}\n\n/**\n * Display cultivation summary\n */\nfunction displaySummary(result: CultivationResult, dryRun: boolean): void {\n  console.log(chalk.bold.blue('📊 Cultivation Summary\\n'));\n\n  if (dryRun) {\n    console.log(chalk.yellow('[DRY RUN] No changes were made\\n'));\n  }\n\n  console.log('  Analysis:');\n  console.log(`    Files processed: ${result.analysis.filesProcessed}`);\n  console.log(`    Dependencies: ${result.analysis.dependenciesFound}`);\n  console.log(`    Services: ${result.analysis.servicesFound}`);\n\n  if (result.seed.created > 0 || result.seed.documents.length > 0) {\n    console.log('\\n  Seed:');\n    console.log(`    Primitives ${dryRun ? 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package/dist/cultivation/deep-analyzer.d.ts

@@ -1,10 +1,10 @@
 /**
- * DeepAnalyzer - Claude-Flow Integration for Deep Codebase Analysis
+ * DeepAnalyzer - Deep Codebase Analysis
  *
- * Uses claude-flow agents for comprehensive codebase analysis:
- * - Pattern detection and architectural insights
- * - Documentation gap analysis
- * - Standards compliance checking
+ * Provides comprehensive codebase analysis using:
+ * - Claude CLI (`claude -p`) when running outside Claude Code
+ * - Direct Anthropic API when ANTHROPIC_API_KEY is available
+ * - Clear error messaging when neither option is available
  *
  * @module cultivation/deep-analyzer
  */
@@ -26,6 +26,8 @@ export interface DeepAnalyzerOptions {
     agentMode?: 'sequential' | 'parallel' | 'adaptive';
     /** Timeout for each agent (ms) */
     agentTimeout?: number;
+    /** Force use of API key even if CLI is available */
+    forceApiKey?: boolean;
 }
 /**
  * Analysis result from an agent
@@ -53,9 +55,10 @@ export interface DeepAnalysisResult {
     results: AgentResult[];
     duration: number;
     errors: string[];
+    mode: 'cli' | 'api' | 'static';
 }
 /**
- * DeepAnalyzer - Uses claude-flow for deep codebase analysis
+ * DeepAnalyzer - Deep codebase analysis with multiple execution modes
  *
  * @example
  * ```typescript
@@ -76,46 +79,59 @@ export declare class DeepAnalyzer {
     private maxAgents;
     private agentMode;
     private agentTimeout;
-    private claudeFlowCommand;
+    private forceApiKey;
     constructor(options: DeepAnalyzerOptions);
     /**
-     * Check if claude-flow is available and determine the best command to use
-     * Checks for direct command first (globally installed), then falls back to npx
+     * Check if running inside a Claude Code session
      */
-    isAvailable(): Promise<boolean>;
+    private isInsideClaudeCode;
     /**
-     * Detect which claude-flow command to use
-     * Returns the command configuration or null if not available
+     * Check if Anthropic API key is available
      */
-    private detectClaudeFlowCommand;
+    private hasApiKey;
     /**
-     * Run deep analysis
+     * Check if Claude CLI is available
      */
-    analyze(): Promise<DeepAnalysisResult>;
+    private isCliAvailable;
     /**
-     * Execute agents in parallel
+     * Determine the best execution mode
      */
-    private executeParallel;
+    private detectExecutionMode;
     /**
-     * Execute agents sequentially
+     * Check if analysis is available
      */
-    private executeSequential;
+    isAvailable(): Promise<boolean>;
     /**
-     * Execute agents adaptively (start with 2, scale based on success)
+     * Get availability status with reason
      */
-    private executeAdaptive;
+    getAvailabilityStatus(): Promise<{
+        available: boolean;
+        reason: string;
+    }>;
+    /**
+     * Run deep analysis
+     */
+    analyze(): Promise<DeepAnalysisResult>;
     /**
      * Execute a single agent
      */
     private executeAgent;
     /**
-     * Build prompt for agent
+     * Build context-aware prompt for analysis
      */
     private buildPrompt;
     /**
-     * Run claude-flow agent
+     * Gather project context for analysis
+     */
+    private gatherProjectContext;
+    /**
+     * Run analysis using Claude CLI
+     */
+    private runWithCli;
+    /**
+     * Run analysis using Anthropic API directly
      */
-    private runClaudeFlowAgent;
+    private runWithApi;
     /**
      * Extract insights from agent output
      */

package/dist/cultivation/deep-analyzer.d.ts.map

@@ -1 +1 @@
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