npm - @weavelogic/knowledge-graph-agent - Versions diffs - 0.10.0 → 0.10.2 - Mend

@weavelogic/knowledge-graph-agent 0.10.0 → 0.10.2

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Files changed (36) hide show

package/README.md +166 -2
package/dist/agents/base-agent.js +3 -3
package/dist/agents/base-agent.js.map +1 -1
package/dist/cli/commands/analyze.js +3 -3
package/dist/cli/commands/analyze.js.map +1 -1
package/dist/cli/commands/convert.js +1 -1
package/dist/cli/commands/convert.js.map +1 -1
package/dist/cli/commands/cultivate.js +8 -3
package/dist/cli/commands/cultivate.js.map +1 -1
package/dist/cli/index.js +1 -1
package/dist/cli/index.js.map +1 -1
package/dist/cultivation/deep-analyzer.d.ts +8 -1
package/dist/cultivation/deep-analyzer.d.ts.map +1 -1
package/dist/cultivation/deep-analyzer.js +36 -8
package/dist/cultivation/deep-analyzer.js.map +1 -1
package/dist/generators/claude-md.js +1 -1
package/dist/generators/claude-md.js.map +1 -1
package/dist/generators/doc-cultivator.js +2 -3
package/dist/generators/doc-cultivator.js.map +1 -1
package/dist/generators/doc-generator-agents.js +18 -9
package/dist/generators/doc-generator-agents.js.map +1 -1
package/dist/generators/docs-analyzer.d.ts +2 -2
package/dist/generators/docs-analyzer.d.ts.map +1 -1
package/dist/generators/docs-analyzer.js +1 -1
package/dist/generators/docs-analyzer.js.map +1 -1
package/dist/generators/docs-convert.d.ts +1 -1
package/dist/generators/docs-convert.d.ts.map +1 -1
package/dist/generators/docs-convert.js +1 -1
package/dist/generators/docs-convert.js.map +1 -1
package/dist/integrations/claude-flow.js +4 -4
package/dist/integrations/claude-flow.js.map +1 -1
package/dist/mcp/clients/mcp-client-adapter.d.ts +1 -1
package/dist/mcp/clients/mcp-client-adapter.d.ts.map +1 -1
package/dist/mcp/clients/mcp-client-adapter.js +1 -1
package/dist/mcp/clients/mcp-client-adapter.js.map +1 -1
package/package.json +1 -1

package/dist/cli/commands/cultivate.js CHANGED Viewed

@@ -125,7 +125,7 @@ function createCultivateCommand() {
         const hasClaudeFlow = await checkClaudeFlowAvailable();
         if (!hasClaudeFlow) {
           console.log(chalk.yellow("  ⚠️  claude-flow not available"));
-          console.log(chalk.gray("  Install with: npm install -g claude-flow@alpha"));
+          console.log(chalk.gray("  Install with: npm install -g claude-flow"));
           result.warnings.push("claude-flow not available for deep analysis");
         } else {
           if (dryRun) {
@@ -240,9 +240,14 @@ function displaySummary(result, dryRun) {
   }
 }
 async function checkClaudeFlowAvailable() {
+  const { execSync } = await import("child_process");
   try {
-    const { execSync } = await import("child_process");
-    execSync("npx claude-flow@alpha --version", { stdio: "pipe", timeout: 5e3 });
+    execSync("claude-flow --version", { stdio: "pipe", timeout: 5e3 });
+    return true;
+  } catch {
+  }
+  try {
+    execSync("npx claude-flow --version", { stdio: "pipe", timeout: 3e4 });
     return true;
   } catch {
     return false;

package/dist/cli/commands/cultivate.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"cultivate.js","sources":["../../../src/cli/commands/cultivate.ts"],"sourcesContent":["/*\n Cultivate Command - Systematically enhance the knowledge graph\n \n This command provides cultivation tasks:\n * - Seed primitives from codebase analysis\n * - Deep analysis with claude-flow integration\n * - Graph enhancement and optimization\n \n @module cli/commands/cultivate\n /\n\nimport { Command } from 'commander';\nimport chalk from 'chalk';\nimport { resolve, join, relative } from 'path';\nimport { existsSync, mkdirSync, readFileSync, readdirSync, statSync } from 'fs';\nimport { SeedGenerator } from '../../cultivation/seed-generator.js';\nimport { ShadowCache, loadShadowCache } from '../../core/cache.js';\nimport type { CultivationOptions, Ecosystem, SeedAnalysis } from '../../cultivation/types.js';\n\n/\n Cultivation result\n /\ninterface CultivationResult {\n success: boolean;\n seed: {\n created: number;\n documents: Array<{ title: string; path: string; type: string }>;\n };\n analysis: {\n filesProcessed: number;\n dependenciesFound: number;\n servicesFound: number;\n };\n cache: {\n updated: number;\n hits: number;\n misses: number;\n };\n duration: number;\n warnings: string[];\n errors: string[];\n}\n\n/\n Create cultivate command\n /\nexport function createCultivateCommand(): Command {\n return new Command('cultivate')\n .description('Systematically cultivate and enhance the knowledge graph')\n .argument('[path]', 'Directory to cultivate (defaults to current directory)', '.')\n .option('--dry-run', 'Preview changes without executing', false)\n .option('-d, --docs <path>', 'Documentation path', 'docs')\n .option('-v, --verbose', 'Verbose output', false)\n .option('--seed', 'Bootstrap vault with primitives from codebase analysis', false)\n .option('--deep-analysis', 'Use claude-flow agents for deep analysis', false)\n .option('--cache', 'Use shadow cache for incremental updates', true)\n .option('--ecosystem <ecosystems>', 'Filter to specific ecosystems (comma-separated)', undefined)\n .option('--include-dev', 'Include dev dependencies', false)\n .option('--major-only', 'Only process major dependencies', false)\n .option('--refresh-cache', 'Force refresh the shadow cache', false)\n .action(async (targetPath: string, options: {\n dryRun?: boolean;\n docs?: string;\n verbose?: boolean;\n seed?: boolean;\n deepAnalysis?: boolean;\n cache?: boolean;\n ecosystem?: string;\n includeDev?: boolean;\n majorOnly?: boolean;\n refreshCache?: boolean;\n }) => {\n const projectRoot = resolve(targetPath);\n const docsPath = options.docs \|\| 'docs';\n const verbose = options.verbose \|\| false;\n const dryRun = options.dryRun \|\| false;\n\n console.log(chalk.bold.green('\\n🌱 Knowledge Graph Cultivator\\n'));\n console.log(` Project: ${projectRoot}`);\n console.log(` Docs: ${docsPath}`);\n if (dryRun) {\n console.log(` Mode: ${chalk.yellow('Dry Run')}`);\n }\n console.log('');\n\n // Determine tasks\n const tasks = {\n seed: options.seed \|\| false,\n deepAnalysis: options.deepAnalysis \|\| false,\n };\n\n // If no tasks selected, show help\n if (!tasks.seed && !tasks.deepAnalysis) {\n console.log(chalk.yellow('💡 No tasks selected. Use one or more of:'));\n console.log(' --seed Bootstrap vault with primitives from codebase');\n console.log(' --deep-analysis Use claude-flow for deep codebase analysis');\n console.log('');\n console.log(chalk.gray('Options:'));\n console.log(' --dry-run Preview without writing files');\n console.log(' --cache Use shadow cache for incremental updates (default: true)');\n console.log(' --refresh-cache Force refresh the shadow cache');\n console.log(' --ecosystem Filter to ecosystems (nodejs,python,rust,go,php,java)');\n console.log(' --include-dev Include dev dependencies');\n console.log(' --major-only Only process major dependencies');\n console.log('');\n console.log('Run \"kg cultivate --help\" for more options');\n return;\n }\n\n const startTime = Date.now();\n const result: CultivationResult = {\n success: true,\n seed: { created: 0, documents: [] },\n analysis: { filesProcessed: 0, dependenciesFound: 0, servicesFound: 0 },\n cache: { updated: 0, hits: 0, misses: 0 },\n duration: 0,\n warnings: [],\n errors: [],\n };\n\n try {\n // Initialize shadow cache\n let cache: ShadowCache \| undefined;\n if (options.cache !== false) {\n console.log(chalk.cyan('📦 Initializing shadow cache...'));\n cache = await loadShadowCache(projectRoot);\n\n if (options.refreshCache) {\n cache.clear();\n console.log(chalk.gray(' Cache cleared (refresh mode)'));\n }\n\n const stats = cache.getStats();\n console.log(chalk.gray(` Entries: ${stats.totalEntries}, Hit rate: ${(stats.hitRate 100).toFixed(1)}%`));\n console.log('');\n }\n\n // Task 1: Seed primitives\n if (tasks.seed) {\n console.log(chalk.cyan('🌱 Seeding primitives from codebase...\\n'));\n\n // Parse ecosystem filter\n let ecosystems: Ecosystem[] \| undefined;\n if (options.ecosystem) {\n ecosystems = options.ecosystem.split(',').map(e => e.trim() as Ecosystem);\n console.log(chalk.gray(` Ecosystems: ${ecosystems.join(', ')}`));\n }\n\n // Create generator\n const generator = await SeedGenerator.create(projectRoot, docsPath);\n\n // Analyze\n console.log(chalk.gray(' Analyzing codebase...'));\n const analysis = await generator.analyze();\n\n result.analysis = {\n filesProcessed: analysis.metadata.filesScanned,\n dependenciesFound: analysis.dependencies.length,\n servicesFound: analysis.services.length,\n };\n\n // Display analysis\n console.log(`\\n ${chalk.bold('Analysis Results:')}`);\n console.log(` Languages: ${analysis.languages.join(', ') \|\| 'none'}`);\n console.log(` Dependencies: ${analysis.dependencies.length}`);\n console.log(` Frameworks: ${analysis.frameworks.length}`);\n console.log(` Services: ${analysis.services.length}`);\n console.log(` Deployments: ${analysis.deployments.length}`);\n\n if (verbose) {\n displayDetailedAnalysis(analysis);\n }\n\n console.log('');\n\n // Generate primitives\n console.log(chalk.gray(' Generating primitive nodes...'));\n const documents = await generator.generatePrimitives(analysis);\n\n if (dryRun) {\n console.log(`\\n ${chalk.yellow('[DRY RUN]')} Would create ${documents.length} primitives:`);\n for (const doc of documents.slice(0, 10)) {\n console.log(` - ${doc.frontmatter.type}: ${doc.title}`);\n }\n if (documents.length > 10) {\n console.log(` ... and ${documents.length - 10} more`);\n }\n result.seed.documents = documents.map(d => ({\n title: d.title,\n path: d.path,\n type: d.frontmatter.type \|\| 'unknown',\n }));\n } else {\n const writeResult = await generator.writePrimitives(documents);\n result.seed.created = writeResult.documentsGenerated.length;\n result.seed.documents = writeResult.documentsGenerated;\n\n console.log(`\\n ${chalk.green('✓')} Created ${writeResult.documentsGenerated.length} primitives`);\n\n if (writeResult.warnings.length > 0) {\n result.warnings.push(...writeResult.warnings);\n if (verbose) {\n console.log(chalk.yellow(` Warnings: ${writeResult.warnings.length}`));\n }\n }\n\n if (writeResult.errors.length > 0) {\n result.errors.push(...writeResult.errors);\n console.log(chalk.red(` Errors: ${writeResult.errors.length}`));\n }\n }\n\n console.log('');\n }\n\n // Task 2: Deep Analysis with claude-flow\n if (tasks.deepAnalysis) {\n console.log(chalk.cyan('🧠 Running deep analysis with claude-flow...\\n'));\n\n // Check if claude-flow is available\n const hasClaudeFlow = await checkClaudeFlowAvailable();\n\n if (!hasClaudeFlow) {\n console.log(chalk.yellow(' ⚠️ claude-flow not available'));\n console.log(chalk.gray(' Install with: npm install -g claude-flow@alpha'));\n result.warnings.push('claude-flow not available for deep analysis');\n } else {\n if (dryRun) {\n console.log(chalk.yellow(' [DRY RUN] Would spawn claude-flow agents:'));\n console.log(' - Researcher: Analyze codebase patterns');\n console.log(' - Analyst: Identify architectural decisions');\n console.log(' - Coder: Detect implementation patterns');\n console.log(' - Tester: Analyze testing coverage');\n } else {\n // Import and run DeepAnalyzer\n try {\n const { DeepAnalyzer } = await import('../../cultivation/deep-analyzer.js');\n const analyzer = new DeepAnalyzer({\n projectRoot,\n docsPath,\n verbose,\n });\n\n const deepResult = await analyzer.analyze();\n\n console.log(` ${chalk.green('✓')} Deep analysis complete`);\n console.log(` Agents spawned: ${deepResult.agentsSpawned}`);\n console.log(` Insights generated: ${deepResult.insightsCount}`);\n console.log(` Documentation created: ${deepResult.documentsCreated}`);\n } catch (error) {\n result.errors.push(`Deep analysis failed: ${error instanceof Error ? error.message : String(error)}`);\n console.log(chalk.red(` ✗ Deep analysis failed: ${error instanceof Error ? error.message : String(error)}`));\n }\n }\n }\n\n console.log('');\n }\n\n // Update cache\n if (cache) {\n const stats = cache.getStats();\n result.cache = {\n updated: stats.totalEntries,\n hits: stats.hitCount,\n misses: stats.missCount,\n };\n\n await cache.save();\n }\n\n result.duration = Date.now() - startTime;\n result.success = result.errors.length === 0;\n\n // Final summary\n displaySummary(result, dryRun);\n\n } catch (error) {\n console.error(chalk.red('\\n❌ Cultivation failed:'), error);\n process.exit(1);\n }\n });\n}\n\n/*\n Display detailed analysis output\n /\nfunction displayDetailedAnalysis(analysis: SeedAnalysis): void {\n if (analysis.frameworks.length > 0) {\n console.log(`\\n ${chalk.gray('Frameworks:')}`);\n for (const fw of analysis.frameworks) {\n console.log(` - ${fw.name} (${fw.ecosystem}) v${fw.version}`);\n }\n }\n\n if (analysis.services.length > 0) {\n console.log(`\\n ${chalk.gray('Services:')}`);\n for (const svc of analysis.services) {\n console.log(` - ${svc.name}: ${svc.type} (${svc.technology})`);\n }\n }\n\n if (analysis.deployments.length > 0) {\n console.log(`\\n ${chalk.gray('Deployments:')}`);\n for (const dep of analysis.deployments) {\n console.log(` - ${dep}`);\n }\n }\n}\n\n/\n Display cultivation summary\n /\nfunction displaySummary(result: CultivationResult, dryRun: boolean): void {\n console.log(chalk.bold.blue('📊 Cultivation Summary\\n'));\n\n if (dryRun) {\n console.log(chalk.yellow('[DRY RUN] No changes were made\\n'));\n }\n\n console.log(' Analysis:');\n console.log(` Files processed: ${result.analysis.filesProcessed}`);\n console.log(` Dependencies: ${result.analysis.dependenciesFound}`);\n console.log(` Services: ${result.analysis.servicesFound}`);\n\n if (result.seed.created > 0 \|\| result.seed.documents.length > 0) {\n console.log('\\n Seed:');\n console.log(` Primitives ${dryRun ? 'would create' : 'created'}: ${dryRun ? result.seed.documents.length : result.seed.created}`);\n }\n\n if (result.cache.updated > 0) {\n console.log('\\n Cache:');\n console.log(` Entries: ${result.cache.updated}`);\n const hitRate = result.cache.hits + result.cache.misses > 0\n ? (result.cache.hits / (result.cache.hits + result.cache.misses) 100).toFixed(1)\n : 0;\n console.log(` Hit rate: ${hitRate}%`);\n }\n\n console.log(`\\n Duration: ${(result.duration / 1000).toFixed(2)}s`);\n\n if (result.warnings.length > 0) {\n console.log(chalk.yellow(`\\n ⚠️ Warnings: ${result.warnings.length}`));\n for (const warning of result.warnings.slice(0, 5)) {\n console.log(chalk.gray(` - ${warning}`));\n }\n }\n\n if (result.errors.length > 0) {\n console.log(chalk.red(`\\n ❌ Errors: ${result.errors.length}`));\n for (const error of result.errors.slice(0, 5)) {\n console.log(chalk.gray(` - ${error}`));\n }\n }\n\n if (result.success && !dryRun) {\n console.log(chalk.bold.green('\\n✨ Cultivation complete!\\n'));\n } else if (!result.success) {\n console.log(chalk.yellow('\\n⚠️ Cultivation completed with errors\\n'));\n } else {\n console.log(chalk.gray('\\nRun without --dry-run to apply changes\\n'));\n }\n}\n\n/*\n Check if claude-flow is available\n */\nasync function checkClaudeFlowAvailable(): Promise<boolean> {\n try {\n const { execSync } = await import('child_process');\n execSync('npx claude-flow@alpha --version', { stdio: 'pipe', timeout: 5000 });\n return true;\n } catch {\n return false;\n 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1	+ {"version":3,"file":"cultivate.js","sources":["../../../src/cli/commands/cultivate.ts"],"sourcesContent":["/*\n Cultivate Command - Systematically enhance the knowledge graph\n \n This command provides cultivation tasks:\n * - Seed primitives from codebase analysis\n * - Deep analysis with claude-flow integration\n * - Graph enhancement and optimization\n \n @module cli/commands/cultivate\n /\n\nimport { Command } from 'commander';\nimport chalk from 'chalk';\nimport { resolve, join, relative } from 'path';\nimport { existsSync, mkdirSync, readFileSync, readdirSync, statSync } from 'fs';\nimport { SeedGenerator } from '../../cultivation/seed-generator.js';\nimport { ShadowCache, loadShadowCache } from '../../core/cache.js';\nimport type { CultivationOptions, Ecosystem, SeedAnalysis } from '../../cultivation/types.js';\n\n/\n Cultivation result\n /\ninterface CultivationResult {\n success: boolean;\n seed: {\n created: number;\n documents: Array<{ title: string; path: string; type: string }>;\n };\n analysis: {\n filesProcessed: number;\n dependenciesFound: number;\n servicesFound: number;\n };\n cache: {\n updated: number;\n hits: number;\n misses: number;\n };\n duration: number;\n warnings: string[];\n errors: string[];\n}\n\n/\n Create cultivate command\n /\nexport function createCultivateCommand(): Command {\n return new Command('cultivate')\n .description('Systematically cultivate and enhance the knowledge graph')\n .argument('[path]', 'Directory to cultivate (defaults to current directory)', '.')\n .option('--dry-run', 'Preview changes without executing', false)\n .option('-d, --docs <path>', 'Documentation path', 'docs')\n .option('-v, --verbose', 'Verbose output', false)\n .option('--seed', 'Bootstrap vault with primitives from codebase analysis', false)\n .option('--deep-analysis', 'Use claude-flow agents for deep analysis', false)\n .option('--cache', 'Use shadow cache for incremental updates', true)\n .option('--ecosystem <ecosystems>', 'Filter to specific ecosystems (comma-separated)', undefined)\n .option('--include-dev', 'Include dev dependencies', false)\n .option('--major-only', 'Only process major dependencies', false)\n .option('--refresh-cache', 'Force refresh the shadow cache', false)\n .action(async (targetPath: string, options: {\n dryRun?: boolean;\n docs?: string;\n verbose?: boolean;\n seed?: boolean;\n deepAnalysis?: boolean;\n cache?: boolean;\n ecosystem?: string;\n includeDev?: boolean;\n majorOnly?: boolean;\n refreshCache?: boolean;\n }) => {\n const projectRoot = resolve(targetPath);\n const docsPath = options.docs \|\| 'docs';\n const verbose = options.verbose \|\| false;\n const dryRun = options.dryRun \|\| false;\n\n console.log(chalk.bold.green('\\n🌱 Knowledge Graph Cultivator\\n'));\n console.log(` Project: ${projectRoot}`);\n console.log(` Docs: ${docsPath}`);\n if (dryRun) {\n console.log(` Mode: ${chalk.yellow('Dry Run')}`);\n }\n console.log('');\n\n // Determine tasks\n const tasks = {\n seed: options.seed \|\| false,\n deepAnalysis: options.deepAnalysis \|\| false,\n };\n\n // If no tasks selected, show help\n if (!tasks.seed && !tasks.deepAnalysis) {\n console.log(chalk.yellow('💡 No tasks selected. Use one or more of:'));\n console.log(' --seed Bootstrap vault with primitives from codebase');\n console.log(' --deep-analysis Use claude-flow for deep codebase analysis');\n console.log('');\n console.log(chalk.gray('Options:'));\n console.log(' --dry-run Preview without writing files');\n console.log(' --cache Use shadow cache for incremental updates (default: true)');\n console.log(' --refresh-cache Force refresh the shadow cache');\n console.log(' --ecosystem Filter to ecosystems (nodejs,python,rust,go,php,java)');\n console.log(' --include-dev Include dev dependencies');\n console.log(' --major-only Only process major dependencies');\n console.log('');\n console.log('Run \"kg cultivate --help\" for more options');\n return;\n }\n\n const startTime = Date.now();\n const result: CultivationResult = {\n success: true,\n seed: { created: 0, documents: [] },\n analysis: { filesProcessed: 0, dependenciesFound: 0, servicesFound: 0 },\n cache: { updated: 0, hits: 0, misses: 0 },\n duration: 0,\n warnings: [],\n errors: [],\n };\n\n try {\n // Initialize shadow cache\n let cache: ShadowCache \| undefined;\n if (options.cache !== false) {\n console.log(chalk.cyan('📦 Initializing shadow cache...'));\n cache = await loadShadowCache(projectRoot);\n\n if (options.refreshCache) {\n cache.clear();\n console.log(chalk.gray(' Cache cleared (refresh mode)'));\n }\n\n const stats = cache.getStats();\n console.log(chalk.gray(` Entries: ${stats.totalEntries}, Hit rate: ${(stats.hitRate 100).toFixed(1)}%`));\n console.log('');\n }\n\n // Task 1: Seed primitives\n if (tasks.seed) {\n console.log(chalk.cyan('🌱 Seeding primitives from codebase...\\n'));\n\n // Parse ecosystem filter\n let ecosystems: Ecosystem[] \| undefined;\n if (options.ecosystem) {\n ecosystems = options.ecosystem.split(',').map(e => e.trim() as Ecosystem);\n console.log(chalk.gray(` Ecosystems: ${ecosystems.join(', ')}`));\n }\n\n // Create generator\n const generator = await SeedGenerator.create(projectRoot, docsPath);\n\n // Analyze\n console.log(chalk.gray(' Analyzing codebase...'));\n const analysis = await generator.analyze();\n\n result.analysis = {\n filesProcessed: analysis.metadata.filesScanned,\n dependenciesFound: analysis.dependencies.length,\n servicesFound: analysis.services.length,\n };\n\n // Display analysis\n console.log(`\\n ${chalk.bold('Analysis Results:')}`);\n console.log(` Languages: ${analysis.languages.join(', ') \|\| 'none'}`);\n console.log(` Dependencies: ${analysis.dependencies.length}`);\n console.log(` Frameworks: ${analysis.frameworks.length}`);\n console.log(` Services: ${analysis.services.length}`);\n console.log(` Deployments: ${analysis.deployments.length}`);\n\n if (verbose) {\n displayDetailedAnalysis(analysis);\n }\n\n console.log('');\n\n // Generate primitives\n console.log(chalk.gray(' Generating primitive nodes...'));\n const documents = await generator.generatePrimitives(analysis);\n\n if (dryRun) {\n console.log(`\\n ${chalk.yellow('[DRY RUN]')} Would create ${documents.length} primitives:`);\n for (const doc of documents.slice(0, 10)) {\n console.log(` - 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package/dist/cli/index.js CHANGED Viewed

@@ -69,7 +69,7 @@ function createCLI() {
     console.log(chalk.gray("    $ kg analyze               # Analyze & migrate to knowledge graph"));
     console.log(chalk.gray("    $ kg analyze deep          # Deep analysis with claude-flow"));
     console.log(chalk.gray("    $ kg analyze report        # Generate analysis report"));
-    console.log(chalk.gray("    $ kg convert docs          # Convert docs/ → docs-nn/"));
+    console.log(chalk.gray("    $ kg convert docs          # Convert docs/ with proper structure"));
     console.log(chalk.gray("    $ kg frontmatter add       # Add frontmatter to files"));
     console.log(chalk.gray("    $ kg frontmatter validate  # Validate frontmatter\n"));
     console.log(chalk.white("  AI-SDLC SOP Compliance:"));

package/dist/cli/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sources":["../../src/cli/index.ts"],"sourcesContent":["/*\n Knowledge Graph Agent CLI\n \n Main CLI setup and command registration.\n /\n\nimport { Command } from 'commander';\nimport chalk from 'chalk';\nimport { createInitCommand } from './commands/init.js';\nimport { createGraphCommand } from './commands/graph.js';\nimport { createDocsCommand } from './commands/docs.js';\nimport { createClaudeCommand } from './commands/claude.js';\nimport { createSyncCommand } from './commands/sync.js';\nimport { createStatsCommand } from './commands/stats.js';\nimport { createSearchCommand } from './commands/search.js';\nimport { createConvertCommand, createFrontmatterCommand } from './commands/convert.js';\nimport { createAnalyzeCommand } from './commands/analyze.js';\nimport { createSOPCommands } from './commands/sop.js';\nimport { createInitPrimitivesCommand, createAnalyzeCodebaseCommand } from './commands/init-primitives.js';\nimport { createCultivateCommand 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graphs for Claude Code')\n .version(VERSION, '-v, --version', 'Display version number');\n\n // Configure help\n program.configureHelp({\n sortSubcommands: true,\n sortOptions: true,\n });\n\n // Add commands\n program.addCommand(createInitCommand());\n program.addCommand(createGraphCommand());\n program.addCommand(createDocsCommand());\n program.addCommand(createClaudeCommand());\n program.addCommand(createSyncCommand());\n program.addCommand(createStatsCommand());\n program.addCommand(createSearchCommand());\n program.addCommand(createConvertCommand());\n program.addCommand(createFrontmatterCommand());\n program.addCommand(createAnalyzeCommand());\n program.addCommand(createSOPCommands());\n program.addCommand(createInitPrimitivesCommand());\n program.addCommand(createAnalyzeCodebaseCommand());\n program.addCommand(createCultivateCommand());\n program.addCommand(createCommitCommand());\n program.addCommand(createConfigCommand());\n program.addCommand(createDiagnosticsCommand());\n 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console.log(chalk.gray(' $ kg diag run --fix # Attempt to fix issues'));\n console.log(chalk.gray(' $ kg diag health # Check system health'));\n console.log(chalk.gray(' $ kg diag repair # Repair database issues'));\n console.log(chalk.gray(' $ kg diag backup # Create database backup'));\n console.log(chalk.gray(' $ kg diag backup --list # List existing backups'));\n console.log(chalk.gray(' $ kg diag info # Show system information\\n'));\n\n console.log(chalk.white(' Workflow Management:'));\n console.log(chalk.gray(' $ kg workflow start <type> # Start a workflow'));\n console.log(chalk.gray(' $ kg workflow status [id] # Check workflow status'));\n console.log(chalk.gray(' $ kg workflow list # List active workflows'));\n console.log(chalk.gray(' $ kg workflow stop <id> # Stop a workflow'));\n console.log(chalk.gray(' $ kg workflow history # Show workflow history\\n'));\n\n console.log(chalk.white(' Vector Operations:'));\n console.log(chalk.gray(' $ kg vector search <query> # Semantic search'));\n console.log(chalk.gray(' $ kg vector stats # Vector store statistics'));\n console.log(chalk.gray(' $ kg vector rebuild # Rebuild vector index'));\n console.log(chalk.gray(' $ kg vector traj list # List trajectories'));\n console.log(chalk.gray(' $ kg vector traj show <id> # Show trajectory details'));\n console.log(chalk.gray(' $ kg vector traj patterns # Show detected patterns\\n'));\n\n console.log(chalk.white(' Audit & Exochain:'));\n console.log(chalk.gray(' $ kg audit query # Query the audit log'));\n console.log(chalk.gray(' $ kg audit checkpoint # Create a checkpoint'));\n console.log(chalk.gray(' $ kg audit verify # Verify chain integrity'));\n console.log(chalk.gray(' $ kg audit sync status # Check sync status'));\n console.log(chalk.gray(' $ kg audit sync peers # List sync peers'));\n console.log(chalk.gray(' $ kg audit export # Export audit log\\n'));\n\n console.log(chalk.white(' Server Mode:'));\n console.log(chalk.gray(' $ kg serve # Start MCP server (stdio)'));\n console.log(chalk.gray(' $ kg serve --graphql # Start GraphQL server'));\n console.log(chalk.gray(' $ kg serve --dashboard # Start web dashboard'));\n console.log(chalk.gray(' $ kg serve --all # Start all servers'));\n console.log(chalk.gray(' $ kg serve status # Show server status\\n'));\n\n console.log(chalk.white(' Dashboard:'));\n console.log(chalk.gray(' $ kg dashboard start # Start dashboard dev server'));\n console.log(chalk.gray(' $ kg dashboard build # Build dashboard for production'));\n console.log(chalk.gray(' $ kg dashboard serve # Serve built dashboard'));\n console.log(chalk.gray(' $ kg dashboard open # Open dashboard in browser'));\n console.log(chalk.gray(' $ kg dashboard status # Check dashboard status\\n'));\n\n console.log(chalk.white(' Plugin Management:'));\n console.log(chalk.gray(' $ kg plugin list # List installed plugins'));\n console.log(chalk.gray(' $ kg plugin install <pkg> # Install a plugin'));\n console.log(chalk.gray(' $ kg plugin uninstall <n> # Uninstall a plugin'));\n console.log(chalk.gray(' $ kg plugin enable <name> # Enable a plugin'));\n console.log(chalk.gray(' $ kg plugin disable <name> # Disable a plugin'));\n console.log(chalk.gray(' $ kg plugin info <name> # Show plugin details'));\n console.log(chalk.gray(' $ kg plugin run <n> <file> # Run analyzer plugin'));\n console.log(chalk.gray(' $ kg plugin create <name> # Create new plugin\\n'));\n\n console.log(chalk.white(' Hive Mind (Graph Reconnection):'));\n console.log(chalk.gray(' $ kg hive-mind analyze-links <vault> # Analyze wiki-links'));\n console.log(chalk.gray(' $ kg hive-mind find-connections <vault> # Find potential links'));\n console.log(chalk.gray(' $ kg hive-mind validate-names <vault> # Validate file names'));\n console.log(chalk.gray(' $ kg hive-mind add-frontmatter <vault> # Add YAML frontmatter\\n'));\n\n console.log(chalk.white(' Claude Code Hooks:'));\n console.log(chalk.gray(' $ kg hooks install # Install hooks to capture interactions'));\n console.log(chalk.gray(' $ kg hooks uninstall # Remove hooks'));\n console.log(chalk.gray(' $ kg hooks status # Show hooks status'));\n console.log(chalk.gray(' $ kg hooks sessions # List captured sessions'));\n console.log(chalk.gray(' $ kg hooks export # Export captured sessions\\n'));\n\n console.log(chalk.white(' Commands:'));\n program.commands.forEach(cmd => {\n console.log(chalk.cyan(` ${cmd.name().padEnd(20)}`), chalk.gray(cmd.description() \|\| ''));\n });\n\n console.log('\\n Run', chalk.cyan('kg <command> --help'), 'for more information\\n');\n });\n\n return 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1	+ {"version":3,"file":"index.js","sources":["../../src/cli/index.ts"],"sourcesContent":["/*\n Knowledge Graph Agent CLI\n \n Main CLI setup and command registration.\n /\n\nimport { Command } from 'commander';\nimport chalk from 'chalk';\nimport { createInitCommand } from './commands/init.js';\nimport { createGraphCommand } from './commands/graph.js';\nimport { createDocsCommand } from './commands/docs.js';\nimport { createClaudeCommand } from './commands/claude.js';\nimport { createSyncCommand } from './commands/sync.js';\nimport { createStatsCommand } from './commands/stats.js';\nimport { createSearchCommand } from './commands/search.js';\nimport { createConvertCommand, createFrontmatterCommand } from './commands/convert.js';\nimport { createAnalyzeCommand } from './commands/analyze.js';\nimport { createSOPCommands } from './commands/sop.js';\nimport { createInitPrimitivesCommand, createAnalyzeCodebaseCommand } from './commands/init-primitives.js';\nimport { createCultivateCommand } from './commands/cultivate.js';\nimport { createCommitCommand } from './commands/commit.js';\nimport { createConfigCommand } from './commands/config.js';\nimport { createDiagnosticsCommand } from './commands/diagnostics.js';\nimport { createWorkflowCommand } from './commands/workflow.js';\nimport { createAuditCommand } from './commands/audit.js';\nimport { createVectorCommand } from './commands/vector.js';\nimport { createServeCommand } from './commands/serve.js';\nimport { createDashboardCommand } from './commands/dashboard.js';\nimport { createPluginCommand } from './commands/plugin.js';\nimport { createHiveMindCommand } from './commands/hive-mind/index.js';\nimport { createHooksCommand } from './commands/hooks.js';\n\n/\n CLI version\n /\nconst VERSION = '0.4.0';\n\n/\n Create and configure the CLI program\n */\nexport function createCLI(): Command {\n const program = new Command();\n\n program\n .name('kg')\n .description('Knowledge Graph Agent - Generate and manage knowledge graphs for Claude Code')\n .version(VERSION, '-v, --version', 'Display version number');\n\n // Configure help\n program.configureHelp({\n sortSubcommands: true,\n sortOptions: true,\n });\n\n // Add commands\n program.addCommand(createInitCommand());\n program.addCommand(createGraphCommand());\n program.addCommand(createDocsCommand());\n program.addCommand(createClaudeCommand());\n program.addCommand(createSyncCommand());\n program.addCommand(createStatsCommand());\n program.addCommand(createSearchCommand());\n program.addCommand(createConvertCommand());\n program.addCommand(createFrontmatterCommand());\n program.addCommand(createAnalyzeCommand());\n program.addCommand(createSOPCommands());\n program.addCommand(createInitPrimitivesCommand());\n program.addCommand(createAnalyzeCodebaseCommand());\n program.addCommand(createCultivateCommand());\n program.addCommand(createCommitCommand());\n program.addCommand(createConfigCommand());\n program.addCommand(createDiagnosticsCommand());\n program.addCommand(createWorkflowCommand());\n program.addCommand(createAuditCommand());\n program.addCommand(createVectorCommand());\n program.addCommand(createServeCommand());\n program.addCommand(createDashboardCommand());\n program.addCommand(createPluginCommand());\n program.addCommand(createHiveMindCommand());\n program.addCommand(createHooksCommand());\n\n // Default action (show help)\n program.action(() => {\n console.log(chalk.cyan.bold('\\n Knowledge Graph Agent\\n'));\n console.log(chalk.gray(' Generate and manage knowledge graphs for Claude Code\\n'));\n\n console.log(chalk.white(' Quick Start:'));\n console.log(chalk.gray(' $ kg init # Initialize knowledge graph'));\n console.log(chalk.gray(' $ kg docs init # Initialize docs directory'));\n console.log(chalk.gray(' $ kg graph # Generate knowledge graph'));\n console.log(chalk.gray(' $ kg claude update # Update CLAUDE.md'));\n console.log(chalk.gray(' $ kg sync # Sync with claude-flow\\n'));\n\n console.log(chalk.white(' Migration & Analysis:'));\n console.log(chalk.gray(' $ kg analyze # Analyze & migrate to knowledge graph'));\n console.log(chalk.gray(' $ kg analyze deep # Deep analysis with claude-flow'));\n console.log(chalk.gray(' $ kg analyze report # Generate analysis report'));\n console.log(chalk.gray(' $ kg convert docs # Convert docs/ with proper structure'));\n console.log(chalk.gray(' $ kg frontmatter add # Add frontmatter to files'));\n console.log(chalk.gray(' $ kg frontmatter validate # Validate frontmatter\\n'));\n\n console.log(chalk.white(' AI-SDLC SOP Compliance:'));\n console.log(chalk.gray(' $ kg sop init # Initialize SOP standards layer'));\n console.log(chalk.gray(' $ kg sop check # Check compliance against SOPs'));\n console.log(chalk.gray(' $ kg sop gaps # Analyze compliance gaps'));\n console.log(chalk.gray(' $ kg sop report # Generate compliance report'));\n console.log(chalk.gray(' $ kg sop list # List available SOPs\\n'));\n\n console.log(chalk.white(' Cultivation & Primitives:'));\n console.log(chalk.gray(' $ kg init-primitives # Bootstrap primitives from codebase'));\n console.log(chalk.gray(' $ kg analyze-codebase # Analyze dependencies & services'));\n console.log(chalk.gray(' $ kg init-primitives --dry-run # Preview without writing\\n'));\n\n console.log(chalk.white(' Git Integration:'));\n console.log(chalk.gray(' $ kg commit # Show status and suggested message'));\n console.log(chalk.gray(' $ kg commit -a # Auto-commit with generated message'));\n console.log(chalk.gray(' $ kg commit -i # Interactive commit mode'));\n console.log(chalk.gray(' $ kg commit -m \"message\" # Commit with custom message'));\n console.log(chalk.gray(' $ kg commit status # Show git status with analysis'));\n console.log(chalk.gray(' $ kg commit log # Show recent commits'));\n console.log(chalk.gray(' $ kg commit diff # Show diff of changes\\n'));\n\n console.log(chalk.white(' Diagnostics & Health:'));\n console.log(chalk.gray(' $ kg diag run # Run full diagnostics'));\n console.log(chalk.gray(' $ kg diag run --fix # Attempt to fix issues'));\n console.log(chalk.gray(' $ kg diag health # Check system health'));\n console.log(chalk.gray(' $ kg diag repair # Repair database issues'));\n console.log(chalk.gray(' $ kg diag backup # Create database backup'));\n console.log(chalk.gray(' $ kg diag backup --list # List existing backups'));\n console.log(chalk.gray(' $ kg diag info # Show system information\\n'));\n\n console.log(chalk.white(' Workflow Management:'));\n console.log(chalk.gray(' $ kg workflow start <type> # Start a workflow'));\n console.log(chalk.gray(' $ kg workflow status [id] # Check workflow status'));\n console.log(chalk.gray(' $ kg workflow list # List active workflows'));\n console.log(chalk.gray(' $ kg workflow stop <id> # Stop a workflow'));\n console.log(chalk.gray(' $ kg workflow history # Show workflow history\\n'));\n\n console.log(chalk.white(' Vector Operations:'));\n console.log(chalk.gray(' $ kg vector search <query> # Semantic search'));\n console.log(chalk.gray(' $ kg vector stats # Vector store statistics'));\n console.log(chalk.gray(' $ kg vector rebuild # Rebuild vector index'));\n console.log(chalk.gray(' $ kg vector traj list # List trajectories'));\n console.log(chalk.gray(' $ kg vector traj show <id> # Show trajectory details'));\n console.log(chalk.gray(' $ kg vector traj patterns # Show detected patterns\\n'));\n\n console.log(chalk.white(' Audit & Exochain:'));\n console.log(chalk.gray(' $ kg audit query # Query the audit log'));\n console.log(chalk.gray(' $ kg audit checkpoint # Create a checkpoint'));\n console.log(chalk.gray(' $ kg audit verify # Verify chain integrity'));\n console.log(chalk.gray(' $ kg audit sync status # Check sync status'));\n console.log(chalk.gray(' $ kg audit sync peers # List sync peers'));\n console.log(chalk.gray(' $ kg audit export # Export audit log\\n'));\n\n console.log(chalk.white(' Server Mode:'));\n console.log(chalk.gray(' $ kg serve # Start MCP server (stdio)'));\n console.log(chalk.gray(' $ kg serve --graphql # Start GraphQL server'));\n console.log(chalk.gray(' $ kg serve --dashboard # Start web dashboard'));\n console.log(chalk.gray(' $ kg serve --all # Start all servers'));\n console.log(chalk.gray(' $ kg serve status # Show server status\\n'));\n\n console.log(chalk.white(' Dashboard:'));\n console.log(chalk.gray(' $ kg dashboard start # Start dashboard dev server'));\n console.log(chalk.gray(' $ kg dashboard build # Build dashboard for production'));\n console.log(chalk.gray(' $ kg dashboard serve # Serve built dashboard'));\n console.log(chalk.gray(' $ kg dashboard open # Open dashboard in browser'));\n console.log(chalk.gray(' $ kg dashboard status # Check dashboard status\\n'));\n\n console.log(chalk.white(' Plugin Management:'));\n console.log(chalk.gray(' $ kg plugin list # List installed plugins'));\n console.log(chalk.gray(' $ kg plugin install <pkg> # Install a plugin'));\n console.log(chalk.gray(' $ kg plugin uninstall <n> # Uninstall a plugin'));\n console.log(chalk.gray(' $ kg plugin enable <name> # Enable a plugin'));\n console.log(chalk.gray(' $ kg plugin disable <name> # Disable a plugin'));\n console.log(chalk.gray(' $ kg plugin info <name> # Show plugin details'));\n console.log(chalk.gray(' $ kg plugin run <n> <file> # Run analyzer plugin'));\n console.log(chalk.gray(' $ kg plugin create <name> # Create new plugin\\n'));\n\n console.log(chalk.white(' Hive Mind (Graph Reconnection):'));\n console.log(chalk.gray(' $ kg hive-mind analyze-links <vault> # Analyze wiki-links'));\n console.log(chalk.gray(' $ kg hive-mind find-connections <vault> # Find potential links'));\n console.log(chalk.gray(' $ kg hive-mind validate-names <vault> # Validate file names'));\n console.log(chalk.gray(' $ kg hive-mind add-frontmatter <vault> # Add YAML frontmatter\\n'));\n\n console.log(chalk.white(' Claude Code Hooks:'));\n console.log(chalk.gray(' $ kg hooks install # Install hooks to capture interactions'));\n console.log(chalk.gray(' $ kg hooks uninstall # Remove hooks'));\n console.log(chalk.gray(' $ kg hooks status # Show hooks status'));\n console.log(chalk.gray(' $ kg hooks sessions # List captured sessions'));\n console.log(chalk.gray(' $ kg hooks export # Export captured sessions\\n'));\n\n console.log(chalk.white(' Commands:'));\n program.commands.forEach(cmd => {\n console.log(chalk.cyan(` ${cmd.name().padEnd(20)}`), chalk.gray(cmd.description() \|\| ''));\n });\n\n console.log('\\n Run', chalk.cyan('kg <command> --help'), 'for more information\\n');\n });\n\n return 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package/dist/cultivation/deep-analyzer.d.ts CHANGED Viewed

@@ -76,11 +76,18 @@ export declare class DeepAnalyzer {
     private maxAgents;
     private agentMode;
     private agentTimeout;
+    private claudeFlowCommand;
     constructor(options: DeepAnalyzerOptions);
     /**
-     * Check if claude-flow is available
+     * Check if claude-flow is available and determine the best command to use
+     * Checks for direct command first (globally installed), then falls back to npx
      */
     isAvailable(): Promise<boolean>;
+    /**
+     * Detect which claude-flow command to use
+     * Returns the command configuration or null if not available
+     */
+    private detectClaudeFlowCommand;
     /**
      * Run deep analysis
      */

package/dist/cultivation/deep-analyzer.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"deep-analyzer.d.ts","sourceRoot":"","sources":["../../src/cultivation/deep-analyzer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAsBH;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,6BAA6B;IAC7B,WAAW,EAAE,MAAM,CAAC;IACpB,oDAAoD;IACpD,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,4CAA4C;IAC5C,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,6BAA6B;IAC7B,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,8BAA8B;IAC9B,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,2BAA2B;IAC3B,SAAS,CAAC,EAAE,YAAY,GAAG,UAAU,GAAG,UAAU,CAAC;IACnD,kCAAkC;IAClC,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED;;GAEG;AACH,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,OAAO,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,SAAS,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAClD,QAAQ,EAAE,MAAM,CAAC;IACjB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,OAAO,EAAE,OAAO,CAAC;IACjB,aAAa,EAAE,MAAM,CAAC;IACtB,aAAa,EAAE,MAAM,CAAC;IACtB,gBAAgB,EAAE,MAAM,CAAC;IACzB,OAAO,EAAE,WAAW,EAAE,CAAC;IACvB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAYD;;;;;;;;;;;;;GAaG;AACH,qBAAa,YAAY;IACvB,OAAO,CAAC,WAAW,CAAS;IAC5B,OAAO,CAAC,QAAQ,CAAS;IACzB,OAAO,CAAC,SAAS,CAAS;IAC1B,OAAO,CAAC,OAAO,CAAU;IACzB,OAAO,CAAC,SAAS,CAAS;IAC1B,OAAO,CAAC,SAAS,CAAyC;IAC1D,OAAO,CAAC,YAAY,CAAS;~~gBAEjB~~,OAAO,EAAE,mBAAmB;IAWxC~~;;OAEG~~;IACG,WAAW,IAAI,OAAO,CAAC,OAAO,CAAC;~~IAerC~~;;OAEG;IACG,OAAO,IAAI,OAAO,CAAC,kBAAkB,CAAC;IAyF5C;;OAEG;YACW,eAAe;IAK7B;;OAEG;YACW,iBAAiB;IAQ/B;;OAEG;YACW,eAAe;IA2B7B;;OAEG;YACW,YAAY;IA0C1B;;OAEG;IACH,OAAO,CAAC,WAAW;IA8BnB;;OAEG;YACW,kBAAkB;~~IA2ChC~~;;OAEG;IACH,OAAO,CAAC,eAAe;IAuBvB;;OAEG;IACH,OAAO,CAAC,YAAY;CA4BrB;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,mBAAmB,GAAG,YAAY,CAE7E;AAED;;GAEG;AACH,wBAAsB,WAAW,CAC/B,WAAW,EAAE,MAAM,EACnB,QAAQ,CAAC,EAAE,MAAM,GAChB,OAAO,CAAC,kBAAkB,CAAC,CAG7B"}
1	+ {"version":3,"file":"deep-analyzer.d.ts","sourceRoot":"","sources":["../../src/cultivation/deep-analyzer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAsBH;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,6BAA6B;IAC7B,WAAW,EAAE,MAAM,CAAC;IACpB,oDAAoD;IACpD,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,4CAA4C;IAC5C,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,6BAA6B;IAC7B,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,8BAA8B;IAC9B,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,2BAA2B;IAC3B,SAAS,CAAC,EAAE,YAAY,GAAG,UAAU,GAAG,UAAU,CAAC;IACnD,kCAAkC;IAClC,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED;;GAEG;AACH,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,OAAO,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,SAAS,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAClD,QAAQ,EAAE,MAAM,CAAC;IACjB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,OAAO,EAAE,OAAO,CAAC;IACjB,aAAa,EAAE,MAAM,CAAC;IACtB,aAAa,EAAE,MAAM,CAAC;IACtB,gBAAgB,EAAE,MAAM,CAAC;IACzB,OAAO,EAAE,WAAW,EAAE,CAAC;IACvB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAYD;;;;;;;;;;;;;GAaG;AACH,qBAAa,YAAY;IACvB,OAAO,CAAC,WAAW,CAAS;IAC5B,OAAO,CAAC,QAAQ,CAAS;IACzB,OAAO,CAAC,SAAS,CAAS;IAC1B,OAAO,CAAC,OAAO,CAAU;IACzB,OAAO,CAAC,SAAS,CAAS;IAC1B,OAAO,CAAC,SAAS,CAAyC;IAC1D,OAAO,CAAC,YAAY,CAAS;IAC7B,OAAO,CAAC,iBAAiB,CAAgD;gBAE7D,OAAO,EAAE,mBAAmB;IAWxC;;;OAGG;IACG,WAAW,IAAI,OAAO,CAAC,OAAO,CAAC;IAKrC;;;OAGG;YACW,uBAAuB;IAkCrC;;OAEG;IACG,OAAO,IAAI,OAAO,CAAC,kBAAkB,CAAC;IAyF5C;;OAEG;YACW,eAAe;IAK7B;;OAEG;YACW,iBAAiB;IAQ/B;;OAEG;YACW,eAAe;IA2B7B;;OAEG;YACW,YAAY;IA0C1B;;OAEG;IACH,OAAO,CAAC,WAAW;IA8BnB;;OAEG;YACW,kBAAkB;IAkDhC;;OAEG;IACH,OAAO,CAAC,eAAe;IAuBvB;;OAEG;IACH,OAAO,CAAC,YAAY;CA4BrB;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,mBAAmB,GAAG,YAAY,CAE7E;AAED;;GAEG;AACH,wBAAsB,WAAW,CAC/B,WAAW,EAAE,MAAM,EACnB,QAAQ,CAAC,EAAE,MAAM,GAChB,OAAO,CAAC,kBAAkB,CAAC,CAG7B"}

package/dist/cultivation/deep-analyzer.js CHANGED Viewed

@@ -20,6 +20,7 @@ class DeepAnalyzer {
   maxAgents;
   agentMode;
   agentTimeout;
+  claudeFlowCommand = null;
   constructor(options) {
     this.projectRoot = resolve(options.projectRoot);
     this.docsPath = options.docsPath || "docs";
@@ -30,18 +31,41 @@ class DeepAnalyzer {
     this.agentTimeout = options.agentTimeout || 6e4;
   }
   /**
-   * Check if claude-flow is available
+   * Check if claude-flow is available and determine the best command to use
+   * Checks for direct command first (globally installed), then falls back to npx
    */
   async isAvailable() {
+    const command = await this.detectClaudeFlowCommand();
+    return command !== null;
+  }
+  /**
+   * Detect which claude-flow command to use
+   * Returns the command configuration or null if not available
+   */
+  async detectClaudeFlowCommand() {
+    if (this.claudeFlowCommand !== null) {
+      return this.claudeFlowCommand;
+    }
     try {
-      execFileSync("npx", ["claude-flow@alpha", "--version"], {
+      execFileSync("claude-flow", ["--version"], {
         stdio: "pipe",
         timeout: 5e3,
         windowsHide: true
       });
-      return true;
+      this.claudeFlowCommand = { cmd: "claude-flow", args: [] };
+      return this.claudeFlowCommand;
     } catch {
-      return false;
+    }
+    try {
+      execFileSync("npx", ["claude-flow", "--version"], {
+        stdio: "pipe",
+        timeout: 3e4,
+        windowsHide: true
+      });
+      this.claudeFlowCommand = { cmd: "npx", args: ["claude-flow"] };
+      return this.claudeFlowCommand;
+    } catch {
+      return null;
     }
   }
   /**
@@ -198,7 +222,7 @@ class DeepAnalyzer {
 **COORDINATION PROTOCOL**:
 \`\`\`bash
-npx claude-flow@alpha hooks pre-task --description "${agent.task}"
+claude-flow hooks pre-task --description "${agent.task}"
 \`\`\`
 **YOUR TASKS**:
@@ -216,7 +240,7 @@ npx claude-flow@alpha hooks pre-task --description "${agent.task}"
 After completing:
 \`\`\`bash
-npx claude-flow@alpha hooks post-task --task-id "${agent.type}-analysis"
+claude-flow hooks post-task --task-id "${agent.type}-analysis"
 \`\`\`
 `;
   }
@@ -228,9 +252,13 @@ npx claude-flow@alpha hooks post-task --task-id "${agent.type}-analysis"
       throw new Error(`Invalid agent type: ${type}. Valid types: ${[...VALID_AGENT_TYPES].join(", ")}`);
     }
     const sanitizedPrompt = prompt.replace(/[`$\\]/g, "");
+    const commandConfig = await this.detectClaudeFlowCommand();
+    if (!commandConfig) {
+      throw new Error("claude-flow is not available");
+    }
     return new Promise((resolve2, reject) => {
-      const args = ["claude-flow@alpha", "agent", "execute", type, sanitizedPrompt, "--json"];
-      const proc = spawn("npx", args, {
+      const args = [...commandConfig.args, "agent", "execute", type, sanitizedPrompt, "--json"];
+      const proc = spawn(commandConfig.cmd, args, {
         cwd: this.projectRoot,
         shell: false,
         // Security: Disable shell to prevent command injection

package/dist/cultivation/deep-analyzer.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"deep-analyzer.js","sources":["../../src/cultivation/deep-analyzer.ts"],"sourcesContent":["/*\n DeepAnalyzer - Claude-Flow Integration for Deep Codebase Analysis\n \n Uses claude-flow agents for comprehensive codebase analysis:\n * - Pattern detection and architectural insights\n * - Documentation gap analysis\n * - Standards compliance checking\n \n @module cultivation/deep-analyzer\n /\n\nimport { execFileSync, spawn } from 'child_process';\nimport { existsSync, mkdirSync, writeFileSync, readFileSync } from 'fs';\nimport { join, resolve } from 'path';\nimport { createLogger } from '../utils/index.js';\n\nconst logger = createLogger('deep-analyzer');\n\n/\n Valid agent types for security validation\n /\nconst VALID_AGENT_TYPES = new Set([\n 'researcher',\n 'architect',\n 'analyst',\n 'coder',\n 'tester',\n 'reviewer',\n 'documenter',\n]);\n\n/\n Deep analyzer options\n /\nexport interface DeepAnalyzerOptions {\n /* Project root directory /\n projectRoot: string;\n /* Documentation path (relative to project root) /\n docsPath?: string;\n /* Output directory for analysis results /\n outputDir?: string;\n /* Enable verbose logging /\n verbose?: boolean;\n /* Maximum agents to spawn /\n maxAgents?: number;\n /* Agent execution mode /\n agentMode?: 'sequential' \| 'parallel' \| 'adaptive';\n /* Timeout for each agent (ms) /\n agentTimeout?: number;\n}\n\n/\n Analysis result from an agent\n /\nexport interface AgentResult {\n name: string;\n type: string;\n success: boolean;\n insights: string[];\n documents: Array<{ path: string; title: string }>;\n duration: number;\n error?: string;\n}\n\n/\n Deep analysis result\n /\nexport interface DeepAnalysisResult {\n success: boolean;\n agentsSpawned: number;\n insightsCount: number;\n documentsCreated: number;\n results: AgentResult[];\n duration: number;\n errors: string[];\n}\n\n/\n Agent configuration\n /\ninterface AgentConfig {\n name: string;\n type: 'researcher' \| 'analyst' \| 'coder' \| 'tester' \| 'reviewer';\n task: string;\n outputFile: string;\n}\n\n/\n DeepAnalyzer - Uses claude-flow for deep codebase analysis\n \n @example\n * ```typescript\n * const analyzer = new DeepAnalyzer({\n * projectRoot: '/my/project',\n * docsPath: 'docs',\n * });\n \n const result = await analyzer.analyze();\n * console.log(`Generated ${result.insightsCount} insights`);\n * ```\n /\nexport class DeepAnalyzer {\n private projectRoot: string;\n private docsPath: string;\n private outputDir: string;\n private verbose: boolean;\n private maxAgents: number;\n private agentMode: 'sequential' \| 'parallel' \| 'adaptive';\n private agentTimeout: number;\n\n constructor(options: DeepAnalyzerOptions) {\n this.projectRoot = resolve(options.projectRoot);\n this.docsPath = options.docsPath \|\| 'docs';\n this.outputDir = options.outputDir \|\| join(this.projectRoot, this.docsPath, 'analysis');\n this.verbose = options.verbose \|\| false;\n this.maxAgents = options.maxAgents \|\| 5;\n this.agentMode = options.agentMode \|\| 'adaptive';\n // Default timeout of 60 seconds (configurable via agentTimeout option)\n this.agentTimeout = options.agentTimeout \|\| 60000;\n }\n\n /\n Check if claude-flow is available\n /\n async isAvailable(): Promise<boolean> {\n try {\n // SECURITY: execFileSync does not spawn a shell by default, preventing shell injection\n // Using npx with explicit arguments avoids shell metacharacter interpretation\n execFileSync('npx', ['claude-flow@alpha', '--version'], {\n stdio: 'pipe',\n timeout: 5000,\n windowsHide: true,\n });\n return true;\n } catch {\n return false;\n }\n }\n\n /\n Run deep analysis\n /\n async analyze(): Promise<DeepAnalysisResult> {\n const startTime = Date.now();\n\n const result: DeepAnalysisResult = {\n success: false,\n agentsSpawned: 0,\n insightsCount: 0,\n documentsCreated: 0,\n results: [],\n duration: 0,\n errors: [],\n };\n\n // Check availability\n if (!(await this.isAvailable())) {\n result.errors.push('claude-flow is not available');\n result.duration = Date.now() - startTime;\n return result;\n }\n\n // Ensure output directory exists\n if (!existsSync(this.outputDir)) {\n mkdirSync(this.outputDir, { recursive: true });\n }\n\n // Define agents\n const agents: AgentConfig[] = [\n {\n name: 'Pattern Researcher',\n type: 'researcher',\n task: 'Analyze codebase architecture, patterns, and design decisions',\n outputFile: 'architecture-patterns.md',\n },\n {\n name: 'Code Analyst',\n type: 'analyst',\n task: 'Identify code quality issues, complexity hotspots, and improvement opportunities',\n outputFile: 'code-analysis.md',\n },\n {\n name: 'Implementation Reviewer',\n type: 'coder',\n task: 'Review implementation patterns, naming conventions, and code style',\n outputFile: 'implementation-review.md',\n },\n {\n name: 'Test Analyzer',\n type: 'tester',\n task: 'Analyze test coverage, testing patterns, and testing gaps',\n outputFile: 'testing-analysis.md',\n },\n ];\n\n logger.info('Starting deep analysis', { agents: agents.length, mode: this.agentMode });\n\n // Execute agents based on mode\n if (this.agentMode === 'parallel') {\n result.results = await this.executeParallel(agents);\n } else if (this.agentMode === 'sequential') {\n result.results = await this.executeSequential(agents);\n } else {\n // Adaptive: start with 2, scale based on success\n result.results = await this.executeAdaptive(agents);\n }\n\n // Calculate totals\n result.agentsSpawned = result.results.length;\n result.insightsCount = result.results.reduce((sum, r) => sum + r.insights.length, 0);\n result.documentsCreated = result.results.reduce((sum, r) => sum + r.documents.length, 0);\n result.success = result.results.every(r => r.success);\n result.duration = Date.now() - startTime;\n\n // Collect errors\n for (const agentResult of result.results) {\n if (agentResult.error) {\n result.errors.push(`${agentResult.name}: ${agentResult.error}`);\n }\n }\n\n logger.info('Deep analysis complete', {\n success: result.success,\n insights: result.insightsCount,\n documents: result.documentsCreated,\n duration: result.duration,\n });\n\n return result;\n }\n\n /\n Execute agents in parallel\n /\n private async executeParallel(agents: AgentConfig[]): Promise<AgentResult[]> {\n const promises = agents.map(agent => this.executeAgent(agent));\n return Promise.all(promises);\n }\n\n /\n Execute agents sequentially\n /\n private async executeSequential(agents: AgentConfig[]): Promise<AgentResult[]> {\n const results: AgentResult[] = [];\n for (const agent of agents) {\n results.push(await this.executeAgent(agent));\n }\n return results;\n }\n\n /\n Execute agents adaptively (start with 2, scale based on success)\n /\n private async executeAdaptive(agents: AgentConfig[]): Promise<AgentResult[]> {\n const results: AgentResult[] = [];\n\n // First batch: 2 agents\n const firstBatch = agents.slice(0, 2);\n const firstResults = await Promise.all(firstBatch.map(a => this.executeAgent(a)));\n results.push(...firstResults);\n\n // Check success rate\n const successRate = firstResults.filter(r => r.success).length / firstResults.length;\n\n if (successRate >= 0.5 && agents.length > 2) {\n // Continue with remaining agents in parallel\n const remaining = agents.slice(2);\n const remainingResults = await Promise.all(remaining.map(a => this.executeAgent(a)));\n results.push(...remainingResults);\n } else if (agents.length > 2) {\n // Fall back to sequential\n logger.warn('Low success rate, switching to sequential mode');\n for (const agent of agents.slice(2)) {\n results.push(await this.executeAgent(agent));\n }\n }\n\n return results;\n }\n\n /\n Execute a single agent\n /\n private async executeAgent(agent: AgentConfig): Promise<AgentResult> {\n const startTime = Date.now();\n const outputPath = join(this.outputDir, agent.outputFile);\n\n const result: AgentResult = {\n name: agent.name,\n type: agent.type,\n success: false,\n insights: [],\n documents: [],\n duration: 0,\n };\n\n try {\n logger.info(`Spawning agent: ${agent.name}`, { type: agent.type });\n\n const prompt = this.buildPrompt(agent);\n\n // Execute claude-flow agent\n const output = await this.runClaudeFlowAgent(agent.type, prompt);\n\n // Parse output for insights\n result.insights = this.extractInsights(output);\n\n // Write output to file\n writeFileSync(outputPath, this.formatOutput(agent, output));\n result.documents.push({ path: outputPath, title: agent.name });\n\n result.success = true;\n\n if (this.verbose) {\n logger.debug(`Agent completed: ${agent.name}`, { insights: result.insights.length });\n }\n } catch (error) {\n result.error = error instanceof Error ? error.message : String(error);\n logger.error(`Agent failed: ${agent.name}`, error instanceof Error ? error : new Error(String(error)));\n }\n\n result.duration = Date.now() - startTime;\n return result;\n }\n\n /\n Build prompt for agent\n /\n private buildPrompt(agent: AgentConfig): string {\n return `You are a ${agent.name} analyzing the project at ${this.projectRoot}.\n\nOBJECTIVE: ${agent.task}\n\nCOORDINATION PROTOCOL:\n\\`\\`\\`bash\nnpx claude-flow@alpha hooks pre-task --description \"${agent.task}\"\n\\`\\`\\`\n\nYOUR TASKS:\n1. Analyze the codebase at ${this.projectRoot}\n2. Identify key patterns and conventions\n3. Document your findings with specific examples\n4. Provide actionable recommendations\n5. Generate comprehensive markdown documentation\n\nOUTPUT REQUIREMENTS:\n- Use clear markdown formatting\n- Include code examples from the project\n- Organize findings by category\n- Prioritize actionable insights\n\nAfter completing:\n\\`\\`\\`bash\nnpx claude-flow@alpha hooks post-task --task-id \"${agent.type}-analysis\"\n\\`\\`\\`\n`;\n }\n\n /\n Run claude-flow agent\n /\n private async runClaudeFlowAgent(type: string, prompt: string): Promise<string> {\n // Security: Validate agent type against allowlist to prevent command injection\n if (!VALID_AGENT_TYPES.has(type)) {\n throw new Error(`Invalid agent type: ${type}. 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string): string[] {\n const insights: string[] = [];\n\n // Look for patterns like \"- Insight:\" or \"## Finding:\"\n const patterns = [\n /[-]\\s(?:insight\|finding\|observation\|recommendation):\\s(.+)/gi,\n /##\\s(?:insight\|finding\|observation\|recommendation):\\s(.+)/gi,\n /(?:key\\s+)?(?:insight\|finding\|observation\|recommendation):\\s(.+)/gi,\n ];\n\n for (const pattern of patterns) {\n const matches = output.matchAll(pattern);\n for (const match of matches) {\n if (match[1]) {\n insights.push(match[1].trim());\n }\n }\n }\n\n // Deduplicate\n return [...new Set(insights)];\n }\n\n /\n Format output for documentation\n /\n private formatOutput(agent: AgentConfig, output: string): string {\n const timestamp = new Date().toISOString();\n\n return `---\ntitle: \"${agent.name} Analysis\"\ntype: analysis\ngenerator: deep-analyzer\nagent: ${agent.type}\ncreated: ${timestamp}\n---\n\n# ${agent.name} Analysis\n\n> Generated by DeepAnalyzer using claude-flow\n\n## 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package/dist/generators/claude-md.js CHANGED Viewed

@@ -79,7 +79,7 @@ This project uses claude-flow for AI coordination:
 ### MCP Configuration
 \`\`\`bash
-claude mcp add claude-flow npx claude-flow@alpha mcp start
+claude mcp add claude-flow npx claude-flow mcp start
 \`\`\`
 ### Memory Namespace

package/dist/generators/claude-md.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"claude-md.js","sources":["../../src/generators/claude-md.ts"],"sourcesContent":["/*\n CLAUDE.md Generator\n \n Generates and manages CLAUDE.md configuration files for Claude Code\n * with knowledge graph integration.\n \n SECURITY NOTES (Handlebars Templates):\n * - All templates use double-braces {{}} which HTML-escapes output\n * - Triple-braces {{{raw}}} are NOT used, preventing XSS in HTML contexts\n * - User input is sanitized via sanitizeTemplateInput() before template use\n * - Template content is validated and Handlebars delimiters are stripped from user input\n * - See: https://handlebarsjs.com/guide/#html-escaping\n /\n\nimport { existsSync, readFileSync, writeFileSync } from 'fs';\nimport { join, basename, resolve, normalize } from 'path';\nimport Handlebars from 'handlebars';\nimport type {\n ClaudeMdGeneratorOptions,\n ClaudeMdSection,\n ClaudeMdTemplate,\n} from '../core/types.js';\n\n/\n Validate that a template path is within the project directory\n * and is a markdown file\n /\nfunction validateTemplatePath(projectRoot: string, templatePath: string): string \| null {\n // Resolve both paths to absolute\n const resolvedRoot = resolve(projectRoot);\n const resolvedTemplate = resolve(projectRoot, templatePath);\n const normalizedTemplate = normalize(resolvedTemplate);\n\n // Ensure template is within project directory\n if (!normalizedTemplate.startsWith(resolvedRoot + '/') && normalizedTemplate !== resolvedRoot) {\n return null; // Path traversal attempt\n }\n\n // Must be a markdown file\n if (!normalizedTemplate.endsWith('.md')) {\n return null;\n }\n\n return normalizedTemplate;\n}\n\n/\n Default CLAUDE.md template with knowledge graph integration\n /\nconst DEFAULT_TEMPLATE = `# Claude Code Configuration - {{projectName}}\n\n## Project Overview\n\n{{description}}\n\n## Knowledge Graph Integration\n\nThis project uses @weavelogic/knowledge-graph-agent for documentation and planning.\n\n### Quick Commands\n\n\\`\\`\\`bash\n# Initialize knowledge graph\nnpx kg init\n\n# Generate/update graph from docs\nnpx kg graph\n\n# Sync with claude-flow memory\nnpx kg sync\n\n# Initialize docs directory\nnpx kg docs init\n\n# Update CLAUDE.md\nnpx kg claude update\n\\`\\`\\`\n\n### Vault Location\n\nDocumentation is stored in: \\`{{docsPath}}\\`\n\n## File Organization\n\n{{#if customDirectories}}\n{{#each customDirectories}}\n- \\`{{this.path}}\\` - {{this.description}}\n{{/each}}\n{{else}}\n- \\`/src\\` - Source code files\n- \\`/docs\\` - Documentation and knowledge base\n- \\`/tests\\` - Test files\n- \\`/config\\` - Configuration files\n{{/if}}\n\n## Build Commands\n\n{{#each buildCommands}}\n- \\`{{this.command}}\\` - {{this.description}}\n{{/each}}\n\n## Code Style & Best Practices\n\n{{#each codeStyleRules}}\n- {{this.name}}: {{this.description}}\n{{/each}}\n\n{{#if includeClaudeFlow}}\n## Claude-Flow Integration\n\nThis project uses claude-flow for AI coordination:\n\n### MCP Configuration\n\n\\`\\`\\`bash\nclaude mcp add claude-flow npx claude-flow@alpha mcp start\n\\`\\`\\`\n\n### Memory Namespace\n\n- Namespace: \\`{{namespace}}\\`\n- Sync on change: {{syncOnChange}}\n\n### Available Tools\n\n- \\`mcp__claude-flow__memory_usage\\` - Store/retrieve knowledge\n- \\`mcp__claude-flow__swarm_init\\` - Initialize agent swarms\n- \\`mcp__claude-flow__task_orchestrate\\` - Coordinate tasks\n\n{{/if}}\n{{#if includeKnowledgeGraph}}\n## Knowledge Graph Commands\n\nThe knowledge graph provides semantic navigation of the codebase:\n\n### CLI Commands\n\n\| Command \| Description \|\n\|---------\|-------------\|\n\| \\`kg init\\` \| Initialize knowledge graph in project \|\n\| \\`kg graph\\` \| Generate/update knowledge graph \|\n\| \\`kg docs init\\` \| Initialize docs directory \|\n\| \\`kg docs generate\\` \| Generate docs from codebase \|\n\| \\`kg claude update\\` \| Update CLAUDE.md \|\n\| \\`kg sync\\` \| Sync with claude-flow memory \|\n\| \\`kg stats\\` \| Show graph statistics \|\n\| \\`kg search <query>\\` \| Search the knowledge graph \|\n\n### Graph Structure\n\n\\`\\`\\`\n{{docsPath}}/\n├── concepts/ # Abstract concepts\n├── components/ # Reusable components\n├── services/ # Backend services\n├── features/ # Product features\n├── integrations/ # External integrations\n├── standards/ # Coding standards\n├── guides/ # How-to guides\n└── references/ # API references\n\\`\\`\\`\n\n{{/if}}\n{{#if customSections}}\n{{#each customSections}}\n## {{this.title}}\n\n{{this.content}}\n\n{{/each}}\n{{/if}}\n## Important Instructions\n\n- NEVER create files unless absolutely necessary\n- ALWAYS prefer editing existing files\n- Use the knowledge graph for documentation\n- Follow the file organization above\n- Run tests before committing\n\n---\nGenerated by @weavelogic/knowledge-graph-agent\n`;\n\n/\n Section templates for common configurations\n /\nconst SECTION_TEMPLATES: Record<string, ClaudeMdSection> = {\n sparc: {\n title: 'SPARC Methodology',\n order: 10,\n content: `This project follows the SPARC development methodology:\n\n1. Specification* - Requirements analysis\n2. Pseudocode - Algorithm design\n3. Architecture - System design\n4. Refinement - TDD implementation\n5. Completion - Integration\n\n### SPARC Commands\n\n\\`\\`\\`bash\nnpx claude-flow sparc modes # List available modes\nnpx claude-flow sparc tdd \"<task>\" # Run TDD workflow\nnpx claude-flow sparc run <mode> # Execute specific mode\n\\`\\`\\``,\n },\n\n testing: {\n title: 'Testing Requirements',\n order: 20,\n content: `All code changes must include appropriate tests:\n\n- Unit tests: For individual functions and components\n- Integration tests: For API endpoints and services\n- E2E tests: For critical user flows\n\n### Running Tests\n\n\\`\\`\\`bash\nnpm run test # Run all tests\nnpm run test:watch # Watch mode\nnpm run test:cov # With coverage\n\\`\\`\\``,\n },\n\n security: {\n title: 'Security Guidelines',\n order: 30,\n content: `Security is a priority. 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1	+ {"version":3,"file":"claude-md.js","sources":["../../src/generators/claude-md.ts"],"sourcesContent":["/*\n CLAUDE.md Generator\n \n Generates and manages CLAUDE.md configuration files for Claude Code\n * with knowledge graph integration.\n \n SECURITY NOTES (Handlebars Templates):\n * - All templates use double-braces {{}} which HTML-escapes output\n * - Triple-braces {{{raw}}} are NOT used, preventing XSS in HTML contexts\n * - User input is sanitized via sanitizeTemplateInput() before template use\n * - Template content is validated and Handlebars delimiters are stripped from user input\n * - See: https://handlebarsjs.com/guide/#html-escaping\n /\n\nimport { existsSync, readFileSync, writeFileSync } from 'fs';\nimport { join, basename, resolve, normalize } from 'path';\nimport Handlebars from 'handlebars';\nimport type {\n ClaudeMdGeneratorOptions,\n ClaudeMdSection,\n ClaudeMdTemplate,\n} from '../core/types.js';\n\n/\n Validate that a template path is within the project directory\n * and is a markdown file\n /\nfunction validateTemplatePath(projectRoot: string, templatePath: string): string \| null {\n // Resolve both paths to absolute\n const resolvedRoot = resolve(projectRoot);\n const resolvedTemplate = resolve(projectRoot, templatePath);\n const normalizedTemplate = normalize(resolvedTemplate);\n\n // Ensure template is within project directory\n if (!normalizedTemplate.startsWith(resolvedRoot + '/') && normalizedTemplate !== resolvedRoot) {\n return null; 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string;\n description?: string;\n scripts: Array<{ command: string; description: string }>;\n}\n\n/\n Sanitize string for safe template use\n * Prevents template injection and removes dangerous characters\n /\nfunction sanitizeForTemplate(str: string \| undefined, maxLength = 200): string {\n if (!str \|\| typeof str !== 'string') return '';\n return str\n .replace(/[<>&\"'`{}\\\\]/g, '') // Remove template-sensitive chars\n .replace(/\\{\\{/g, '') // Remove Handlebars delimiters\n .replace(/\\}\\}/g, '')\n .slice(0, maxLength)\n .trim();\n}\n\nfunction detectProjectInfo(projectRoot: string): ProjectInfo {\n const info: ProjectInfo = {\n name: sanitizeForTemplate(basename(projectRoot), 100) \|\| 'project',\n scripts: [],\n };\n\n try {\n const pkgPath = join(projectRoot, 'package.json');\n if (existsSync(pkgPath)) {\n let pkg;\n try {\n pkg = JSON.parse(readFileSync(pkgPath, 'utf-8'));\n } catch {\n return info; // Return default info on JSON parse error\n }\n\n // Sanitize project 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command: 'npm run dev', description: 'Development mode' },\n ];\n }\n\n return info;\n}\n\nfunction getScriptDescription(name: string, script: string): string {\n const descriptions: Record<string, string> = {\n build: 'Build the project',\n test: 'Run tests',\n dev: 'Start development server',\n start: 'Start production server',\n lint: 'Run linter',\n typecheck: 'Type checking',\n };\n\n return descriptions[name] \|\| `Run ${name}`;\n}\n\nfunction getDocsPath(projectRoot: string): string {\n const possiblePaths = ['docs', 'documentation', 'doc'];\n\n for (const path of possiblePaths) {\n if (existsSync(join(projectRoot, path))) {\n return path;\n }\n }\n\n return 'docs';\n}\n\nfunction getDefaultCodeStyleRules(): Array<{ name: string; description: string }> {\n return [\n { name: 'Modular Design', description: 'Files under 500 lines' },\n { name: 'Environment Safety', description: 'Never hardcode secrets' },\n { name: 'Test-First', description: 'Write tests before implementation' 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package/dist/generators/doc-cultivator.js CHANGED Viewed

@@ -354,8 +354,7 @@ async function executeCultivationSwarm(tasks, result, options) {
 }
 async function executeSwarmTask(task, options) {
   return new Promise((resolve) => {
-    const agentProcess = spawn("npx", [
-      "claude-flow@alpha",
+    const agentProcess = spawn("claude-flow", [
       "agent",
       "spawn",
       "--type",
@@ -364,7 +363,7 @@ async function executeSwarmTask(task, options) {
       task.prompt.slice(0, 1e3)
       // Truncate for CLI
     ], {
-      shell: true,
+      shell: false,
       timeout: 12e4
     });
     let output = "";