@weavelogic/knowledge-graph-agent 0.1.0 → 0.3.0

package/dist/generators/docs-analyzer.js

@@ -0,0 +1,567 @@
+import { existsSync, mkdirSync, writeFileSync, readFileSync } from "fs";
+import { join, dirname, basename } from "path";
+import fg from "fast-glob";
+import matter from "gray-matter";
+const CATEGORY_STRUCTURE = {
+  concepts: {
+    type: "concept",
+    description: "Abstract concepts, theories, and architectural principles",
+    subcategories: ["architecture", "patterns", "principles", "models"]
+  },
+  components: {
+    type: "technical",
+    description: "Reusable technical components and implementations",
+    subcategories: ["ui", "utilities", "core", "shared"]
+  },
+  services: {
+    type: "service",
+    description: "Backend services, APIs, and workers",
+    subcategories: ["api", "workers", "handlers", "middleware"]
+  },
+  features: {
+    type: "feature",
+    description: "Product features and capabilities",
+    subcategories: ["core", "advanced", "experimental"]
+  },
+  integrations: {
+    type: "integration",
+    description: "External integrations and adapters",
+    subcategories: ["databases", "auth", "storage", "monitoring", "third-party"]
+  },
+  standards: {
+    type: "standard",
+    description: "Coding standards, conventions, and best practices",
+    subcategories: ["coding", "documentation", "testing", "security"]
+  },
+  guides: {
+    type: "guide",
+    description: "How-to guides and tutorials",
+    subcategories: ["getting-started", "tutorials", "troubleshooting", "deployment"]
+  },
+  references: {
+    type: "technical",
+    description: "API references and technical documentation",
+    subcategories: ["api", "cli", "config", "schemas"]
+  }
+};
+async function analyzeDocs(options) {
+  const {
+    sourceDir,
+    targetDir = "docs-nn",
+    projectRoot,
+    useClaudeFlow = false,
+    createMOC = true,
+    linkOriginal = true,
+    maxDepth = 3,
+    dryRun = false,
+    verbose = false
+  } = options;
+  const result = {
+    success: true,
+    filesAnalyzed: 0,
+    filesCreated: 0,
+    mocFilesCreated: 0,
+    errors: [],
+    analyzed: [],
+    structure: /* @__PURE__ */ new Map()
+  };
+  const sourcePath = join(projectRoot, sourceDir);
+  const targetPath = join(projectRoot, targetDir);
+  if (!existsSync(sourcePath)) {
+    result.success = false;
+    result.errors.push(`Source directory not found: ${sourcePath}`);
+    return result;
+  }
+  if (!dryRun) {
+    createFullStructure(targetPath);
+  }
+  const files = await fg("**/*.md", {
+    cwd: sourcePath,
+    ignore: ["node_modules/**", ".git/**", "_templates/**", "docs-nn/**"]
+  });
+  const analyzedDocs = [];
+  for (const file of files) {
+    result.filesAnalyzed++;
+    const sourceFile = join(sourcePath, file);
+    try {
+      const analyzed = await analyzeDocument(sourceFile, file, sourcePath, {
+        useClaudeFlow,
+        linkOriginal,
+        verbose
+      });
+      analyzedDocs.push(analyzed);
+      const category = analyzed.category.split("/")[0];
+      if (!result.structure.has(category)) {
+        result.structure.set(category, []);
+      }
+      result.structure.get(category).push(analyzed.title);
+    } catch (error) {
+      result.errors.push(`Failed to analyze ${file}: ${error}`);
+    }
+  }
+  buildCrossReferences(analyzedDocs);
+  for (const doc of analyzedDocs) {
+    try {
+      const targetFile = join(targetPath, doc.newPath);
+      if (!dryRun) {
+        mkdirSync(dirname(targetFile), { recursive: true });
+        const content = generateKnowledgeDoc(doc, sourceDir, linkOriginal, analyzedDocs);
+        writeFileSync(targetFile, content, "utf-8");
+      }
+      result.filesCreated++;
+      result.analyzed.push(doc);
+    } catch (error) {
+      result.errors.push(`Failed to create ${doc.newPath}: ${error}`);
+    }
+  }
+  if (createMOC && !dryRun) {
+    for (const [category, docs] of result.structure) {
+      const mocPath = join(targetPath, category, "_MOC.md");
+      const mocContent = generateMOC(category, docs, analyzedDocs);
+      writeFileSync(mocPath, mocContent, "utf-8");
+      result.mocFilesCreated++;
+    }
+    const masterMocPath = join(targetPath, "MOC.md");
+    const masterMocContent = generateMasterMOC(result.structure, analyzedDocs);
+    writeFileSync(masterMocPath, masterMocContent, "utf-8");
+    result.mocFilesCreated++;
+    const primitivesPath = join(targetPath, "PRIMITIVES.md");
+    const primitivesContent = generatePrimitives(analyzedDocs);
+    writeFileSync(primitivesPath, primitivesContent, "utf-8");
+  }
+  result.success = result.errors.length === 0;
+  return result;
+}
+async function analyzeDocument(filePath, relativePath, sourcePath, options) {
+  const content = readFileSync(filePath, "utf-8");
+  const { data: existingFrontmatter, content: body } = matter(content);
+  const filename = basename(filePath, ".md");
+  const title = existingFrontmatter.title || formatTitle(filename);
+  const { type, category } = detectTypeAndCategory(relativePath, body, existingFrontmatter);
+  const tags = extractAllTags(body, existingFrontmatter, relativePath);
+  const related = extractLinks(body);
+  const concepts = extractConcepts(body);
+  const researchNeeded = findResearchAreas(body);
+  const todos = extractAndGenerateTodos(body, content);
+  const summary = generateSummary(body, existingFrontmatter);
+  const newPath = join(category, formatFilename(filename) + ".md");
+  return {
+    originalPath: relativePath,
+    newPath,
+    title,
+    type,
+    tags,
+    related,
+    concepts,
+    researchNeeded,
+    todos,
+    summary,
+    category
+  };
+}
+function createFullStructure(targetPath) {
+  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {
+    mkdirSync(join(targetPath, category), { recursive: true });
+    for (const sub of config.subcategories) {
+      mkdirSync(join(targetPath, category, sub), { recursive: true });
+    }
+  }
+  mkdirSync(join(targetPath, "_templates"), { recursive: true });
+  mkdirSync(join(targetPath, "_attachments"), { recursive: true });
+  mkdirSync(join(targetPath, "_archive"), { recursive: true });
+}
+function detectTypeAndCategory(filePath, content, frontmatter) {
+  if (frontmatter.type && frontmatter.category) {
+    return {
+      type: frontmatter.type,
+      category: frontmatter.category
+    };
+  }
+  content.toLowerCase();
+  const lowerPath = filePath.toLowerCase();
+  const scores = {};
+  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {
+    scores[category] = 0;
+    if (lowerPath.includes(category)) scores[category] += 10;
+    for (const sub of config.subcategories) {
+      if (lowerPath.includes(sub)) scores[category] += 5;
+    }
+    const keywords = getKeywordsForType(config.type);
+    for (const keyword of keywords) {
+      const regex = new RegExp(`\\b${keyword}\\b`, "gi");
+      const matches = content.match(regex);
+      if (matches) scores[category] += matches.length;
+    }
+  }
+  let bestCategory = "concepts";
+  let bestScore = 0;
+  for (const [category, score] of Object.entries(scores)) {
+    if (score > bestScore) {
+      bestScore = score;
+      bestCategory = category;
+    }
+  }
+  return {
+    type: CATEGORY_STRUCTURE[bestCategory].type,
+    category: bestCategory
+  };
+}
+function getKeywordsForType(type) {
+  const keywords = {
+    concept: ["concept", "theory", "principle", "overview", "introduction", "architecture", "design", "pattern"],
+    technical: ["component", "implementation", "class", "function", "module", "utility", "helper"],
+    feature: ["feature", "capability", "functionality", "user", "requirement", "use case"],
+    primitive: ["library", "framework", "dependency", "tool", "sdk"],
+    service: ["api", "endpoint", "service", "server", "backend", "worker", "handler"],
+    guide: ["how to", "tutorial", "guide", "step", "walkthrough", "getting started"],
+    standard: ["standard", "convention", "best practice", "rule", "guideline", "style"],
+    integration: ["integration", "connect", "plugin", "adapter", "sync", "import", "export"]
+  };
+  return keywords[type] || [];
+}
+function extractAllTags(content, frontmatter, filePath) {
+  const tags = /* @__PURE__ */ new Set();
+  if (Array.isArray(frontmatter.tags)) {
+    frontmatter.tags.forEach((t) => tags.add(String(t)));
+  }
+  const hashTags = content.match(/#[\w-]+/g);
+  if (hashTags) {
+    hashTags.forEach((t) => tags.add(t.slice(1)));
+  }
+  const pathParts = filePath.split("/").filter((p) => p && !p.endsWith(".md"));
+  pathParts.forEach((p) => {
+    if (p.length > 2 && p.length < 20) {
+      tags.add(p.replace(/[-_]/g, "-").toLowerCase());
+    }
+  });
+  if (content.match(/\b(wip|draft|todo)\b/i)) tags.add("needs-work");
+  if (content.match(/\b(deprecated|legacy)\b/i)) tags.add("deprecated");
+  if (content.match(/\b(experimental|beta)\b/i)) tags.add("experimental");
+  return [...tags].slice(0, 15);
+}
+function extractLinks(content) {
+  const links = /* @__PURE__ */ new Set();
+  const wikilinks = content.match(/\[\[([^\]|]+)(?:\|[^\]]+)?\]\]/g);
+  if (wikilinks) {
+    wikilinks.forEach((link) => {
+      const match = link.match(/\[\[([^\]|]+)/);
+      if (match) links.add(match[1].trim());
+    });
+  }
+  const mdLinks = content.match(/\[([^\]]+)\]\(([^)]+)\)/g);
+  if (mdLinks) {
+    mdLinks.forEach((link) => {
+      const match = link.match(/\]\(([^)]+)\)/);
+      if (match && !match[1].startsWith("http")) {
+        links.add(match[1].replace(/\.md$/, "").trim());
+      }
+    });
+  }
+  return [...links];
+}
+function extractConcepts(content) {
+  const concepts = [];
+  const headers = content.match(/^##\s+(.+)$/gm);
+  if (headers) {
+    headers.slice(0, 5).forEach((h) => {
+      concepts.push(h.replace(/^##\s+/, "").trim());
+    });
+  }
+  const boldTerms = content.match(/\*\*([^*]+)\*\*/g);
+  if (boldTerms) {
+    boldTerms.slice(0, 5).forEach((term) => {
+      const clean = term.replace(/\*\*/g, "").trim();
+      if (clean.length > 2 && clean.length < 50) {
+        concepts.push(clean);
+      }
+    });
+  }
+  return [...new Set(concepts)].slice(0, 10);
+}
+function findResearchAreas(content, filename) {
+  const areas = [];
+  const questions = content.match(/[^.!?]*\?/g);
+  if (questions) {
+    questions.slice(0, 3).forEach((q) => {
+      if (q.length > 10 && q.length < 200) {
+        areas.push(q.trim());
+      }
+    });
+  }
+  if (content.match(/\bTBD\b|\bTODO\b|\bFIXME\b/i)) {
+    areas.push("Contains placeholders that need completion");
+  }
+  const emptyHeaders = content.match(/^##[^#\n]+\n\n##/gm);
+  if (emptyHeaders) {
+    areas.push("Has empty sections that need content");
+  }
+  if (content.length < 500) {
+    areas.push("Document is short - may need expansion");
+  }
+  return areas;
+}
+function extractAndGenerateTodos(body, fullContent, filename) {
+  const todos = [];
+  const existingTodos = fullContent.match(/[-*]\s*\[[ x]\]\s*(.+)/g);
+  if (existingTodos) {
+    existingTodos.forEach((todo) => {
+      todos.push(todo.replace(/^[-*]\s*\[[ x]\]\s*/, "").trim());
+    });
+  }
+  const todoComments = fullContent.match(/(?:TODO|FIXME|XXX):\s*(.+)/gi);
+  if (todoComments) {
+    todoComments.forEach((todo) => {
+      todos.push(todo.replace(/^(?:TODO|FIXME|XXX):\s*/i, "").trim());
+    });
+  }
+  if (!fullContent.match(/^---[\s\S]*?---/)) {
+    todos.push("Add proper frontmatter");
+  }
+  if (!fullContent.match(/\[\[/)) {
+    todos.push("Add wikilinks to related documents");
+  }
+  if (!fullContent.match(/^##\s/m)) {
+    todos.push("Add section structure with headers");
+  }
+  return [...new Set(todos)].slice(0, 10);
+}
+function generateSummary(body, frontmatter) {
+  if (frontmatter.description) {
+    return String(frontmatter.description);
+  }
+  const lines = body.split("\n");
+  for (const line of lines) {
+    const trimmed = line.trim();
+    if (trimmed && !trimmed.startsWith("#") && !trimmed.startsWith("```") && trimmed.length > 30) {
+      return trimmed.length > 200 ? trimmed.slice(0, 197) + "..." : trimmed;
+    }
+  }
+  return "Documentation requiring summary.";
+}
+function buildCrossReferences(docs) {
+  const titleMap = /* @__PURE__ */ new Map();
+  docs.forEach((doc) => {
+    titleMap.set(doc.title.toLowerCase(), doc);
+    titleMap.set(formatFilename(doc.title), doc);
+  });
+  docs.forEach((doc) => {
+    const newRelated = [];
+    doc.related.forEach((link) => {
+      const linkedDoc = titleMap.get(link.toLowerCase()) || titleMap.get(formatFilename(link));
+      if (linkedDoc) {
+        newRelated.push(linkedDoc.title);
+      } else {
+        newRelated.push(link);
+      }
+    });
+    const sharedTagDocs = docs.filter(
+      (other) => other !== doc && other.tags.some((t) => doc.tags.includes(t))
+    );
+    sharedTagDocs.slice(0, 3).forEach((other) => {
+      if (!newRelated.includes(other.title)) {
+        newRelated.push(other.title);
+      }
+    });
+    doc.related = [...new Set(newRelated)].slice(0, 10);
+  });
+}
+function generateKnowledgeDoc(doc, sourceDir, linkOriginal, allDocs) {
+  const lines = [];
+  lines.push("---");
+  lines.push(`title: "${doc.title}"`);
+  lines.push(`type: ${doc.type}`);
+  lines.push(`status: active`);
+  if (doc.tags.length > 0) {
+    lines.push("tags:");
+    doc.tags.forEach((tag) => lines.push(`  - ${tag}`));
+  }
+  lines.push(`category: ${doc.category}`);
+  lines.push(`description: "${doc.summary.replace(/"/g, '\\"')}"`);
+  lines.push(`created: ${(/* @__PURE__ */ new Date()).toISOString().split("T")[0]}`);
+  lines.push(`updated: ${(/* @__PURE__ */ new Date()).toISOString().split("T")[0]}`);
+  if (linkOriginal) {
+    lines.push(`original: "${sourceDir}/${doc.originalPath}"`);
+  }
+  if (doc.related.length > 0) {
+    lines.push("related:");
+    doc.related.slice(0, 5).forEach((r) => lines.push(`  - "[[${r}]]"`));
+  }
+  lines.push("---");
+  lines.push("");
+  lines.push(`# ${doc.title}`);
+  lines.push("");
+  lines.push("## Overview");
+  lines.push("");
+  lines.push(doc.summary);
+  lines.push("");
+  if (linkOriginal) {
+    lines.push(`> [!info] Original Documentation`);
+    lines.push(`> See [[${sourceDir}/${doc.originalPath}|original document]] for full details.`);
+    lines.push("");
+  }
+  if (doc.concepts.length > 0) {
+    lines.push("## Key Concepts");
+    lines.push("");
+    doc.concepts.forEach((concept) => {
+      lines.push(`- **${concept}**`);
+    });
+    lines.push("");
+  }
+  if (doc.related.length > 0) {
+    lines.push("## Related");
+    lines.push("");
+    doc.related.forEach((rel) => {
+      lines.push(`- [[${rel}]]`);
+    });
+    lines.push("");
+  }
+  if (doc.researchNeeded.length > 0) {
+    lines.push("## Research Needed");
+    lines.push("");
+    lines.push("> [!warning] Areas Requiring Further Research");
+    doc.researchNeeded.forEach((area) => {
+      lines.push(`> - ${area}`);
+    });
+    lines.push("");
+  }
+  if (doc.todos.length > 0) {
+    lines.push("## TODOs");
+    lines.push("");
+    doc.todos.forEach((todo) => {
+      lines.push(`- [ ] ${todo}`);
+    });
+    lines.push("");
+  }
+  lines.push("## Tags");
+  lines.push("");
+  lines.push(doc.tags.map((t) => `#${t}`).join(" "));
+  lines.push("");
+  return lines.join("\n");
+}
+function generateMOC(category, docTitles, allDocs) {
+  const config = CATEGORY_STRUCTURE[category];
+  const categoryDocs = allDocs.filter((d) => d.category.startsWith(category));
+  const lines = [];
+  lines.push("---");
+  lines.push(`title: "${formatTitle(category)} - Map of Content"`);
+  lines.push("type: concept");
+  lines.push("status: active");
+  lines.push("tags:");
+  lines.push("  - moc");
+  lines.push(`  - ${category}`);
+  lines.push(`created: ${(/* @__PURE__ */ new Date()).toISOString().split("T")[0]}`);
+  lines.push("---");
+  lines.push("");
+  lines.push(`# ${formatTitle(category)}`);
+  lines.push("");
+  lines.push(config?.description || `Documentation related to ${category}.`);
+  lines.push("");
+  const bySubcategory = /* @__PURE__ */ new Map();
+  categoryDocs.forEach((doc) => {
+    const parts = doc.category.split("/");
+    const sub = parts[1] || "general";
+    if (!bySubcategory.has(sub)) {
+      bySubcategory.set(sub, []);
+    }
+    bySubcategory.get(sub).push(doc);
+  });
+  for (const [sub, docs] of bySubcategory) {
+    lines.push(`## ${formatTitle(sub)}`);
+    lines.push("");
+    docs.forEach((doc) => {
+      lines.push(`- [[${doc.title}]] - ${doc.summary.slice(0, 60)}...`);
+    });
+    lines.push("");
+  }
+  lines.push("---");
+  lines.push(`*${categoryDocs.length} documents in this category*`);
+  return lines.join("\n");
+}
+function generateMasterMOC(structure, allDocs) {
+  const lines = [];
+  lines.push("---");
+  lines.push('title: "Knowledge Graph - Master Index"');
+  lines.push("type: concept");
+  lines.push("status: active");
+  lines.push("tags:");
+  lines.push("  - moc");
+  lines.push("  - index");
+  lines.push("  - knowledge-graph");
+  lines.push(`created: ${(/* @__PURE__ */ new Date()).toISOString().split("T")[0]}`);
+  lines.push("---");
+  lines.push("");
+  lines.push("# Knowledge Graph");
+  lines.push("");
+  lines.push("Welcome to the knowledge graph. This is the master index of all documentation.");
+  lines.push("");
+  lines.push("## Categories");
+  lines.push("");
+  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {
+    const count = structure.get(category)?.length || 0;
+    lines.push(`### [[${category}/_MOC|${formatTitle(category)}]]`);
+    lines.push("");
+    lines.push(`${config.description}`);
+    lines.push(`*${count} documents*`);
+    lines.push("");
+  }
+  lines.push("## Quick Links");
+  lines.push("");
+  lines.push("- [[PRIMITIVES]] - Core building blocks and technologies");
+  lines.push("- [[guides/_MOC|Getting Started]]");
+  lines.push("- [[standards/_MOC|Coding Standards]]");
+  lines.push("");
+  lines.push("## Statistics");
+  lines.push("");
+  lines.push(`- **Total Documents**: ${allDocs.length}`);
+  lines.push(`- **Categories**: ${structure.size}`);
+  lines.push(`- **Generated**: ${(/* @__PURE__ */ new Date()).toISOString()}`);
+  lines.push("");
+  return lines.join("\n");
+}
+function generatePrimitives(allDocs) {
+  const lines = [];
+  lines.push("---");
+  lines.push('title: "Primitives"');
+  lines.push("type: primitive");
+  lines.push("status: active");
+  lines.push("tags:");
+  lines.push("  - primitives");
+  lines.push("  - foundation");
+  lines.push("  - knowledge-graph");
+  lines.push(`created: ${(/* @__PURE__ */ new Date()).toISOString().split("T")[0]}`);
+  lines.push("---");
+  lines.push("");
+  lines.push("# Primitives");
+  lines.push("");
+  lines.push("Core building blocks and foundational technologies used in this project.");
+  lines.push("");
+  const byType = /* @__PURE__ */ new Map();
+  allDocs.forEach((doc) => {
+    if (!byType.has(doc.type)) {
+      byType.set(doc.type, []);
+    }
+    byType.get(doc.type).push(doc);
+  });
+  for (const [type, docs] of byType) {
+    lines.push(`## ${formatTitle(type)}`);
+    lines.push("");
+    docs.slice(0, 10).forEach((doc) => {
+      lines.push(`- [[${doc.title}]]`);
+    });
+    if (docs.length > 10) {
+      lines.push(`- *...and ${docs.length - 10} more*`);
+    }
+    lines.push("");
+  }
+  return lines.join("\n");
+}
+function formatFilename(title) {
+  return title.toLowerCase().replace(/[^a-z0-9]+/g, "-").replace(/^-|-$/g, "").slice(0, 50);
+}
+function formatTitle(filename) {
+  return filename.replace(/[-_]/g, " ").replace(/\b\w/g, (c) => c.toUpperCase()).trim();
+}
+export {
+  analyzeDocs
+};
+//# sourceMappingURL=docs-analyzer.js.map

package/dist/generators/docs-analyzer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"docs-analyzer.js","sources":["../../src/generators/docs-analyzer.ts"],"sourcesContent":["/**\n * Docs Analyzer\n *\n * Advanced documentation analyzer that uses claude-flow to create\n * comprehensive knowledge graph documentation with proper structure,\n * wikilinks, frontmatter, and tags following Obsidian conventions.\n */\n\nimport { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';\nimport { join, basename, dirname, relative, extname } from 'path';\nimport { execSync, spawn } from 'child_process';\nimport fg from 'fast-glob';\nimport matter from 'gray-matter';\nimport type { NodeType, NodeStatus, NodeFrontmatter } from '../core/types.js';\n\n/**\n * Analyzer options\n */\nexport interface AnalyzerOptions {\n  /** Source directory with existing docs */\n  sourceDir: string;\n  /** Target directory (default: docs-nn) */\n  targetDir?: string;\n  /** Project root for path resolution */\n  projectRoot: string;\n  /** Use claude-flow for deep analysis */\n  useClaudeFlow?: boolean;\n  /** Create MOC (Map of Content) files */\n  createMOC?: boolean;\n  /** Link back to original docs */\n  linkOriginal?: boolean;\n  /** Maximum depth for analysis */\n  maxDepth?: number;\n  /** Dry run - show what would be done */\n  dryRun?: boolean;\n  /** Verbose output */\n  verbose?: boolean;\n}\n\n/**\n * Analyzed document\n */\nexport interface AnalyzedDoc {\n  /** Original file path */\n  originalPath: string;\n  /** New file path in docs-nn */\n  newPath: string;\n  /** Document title */\n  title: string;\n  /** Detected node type */\n  type: NodeType;\n  /** Extracted tags */\n  tags: string[];\n  /** Related documents (wikilinks) */\n  related: string[];\n  /** Key concepts extracted */\n  concepts: string[];\n  /** Areas needing research */\n  researchNeeded: string[];\n  /** TODOs found or generated */\n  todos: string[];\n  /** Summary/description */\n  summary: string;\n  /** Category path in structure */\n  category: string;\n}\n\n/**\n * Analyzer result\n */\nexport interface AnalyzerResult {\n  success: boolean;\n  filesAnalyzed: number;\n  filesCreated: number;\n  mocFilesCreated: number;\n  errors: string[];\n  analyzed: AnalyzedDoc[];\n  structure: Map<string, string[]>;\n}\n\n/**\n * Weave-NN category structure with descriptions\n */\nconst CATEGORY_STRUCTURE: Record<string, { type: NodeType; description: string; subcategories: string[] }> = {\n  concepts: {\n    type: 'concept',\n    description: 'Abstract concepts, theories, and architectural principles',\n    subcategories: ['architecture', 'patterns', 'principles', 'models'],\n  },\n  components: {\n    type: 'technical',\n    description: 'Reusable technical components and implementations',\n    subcategories: ['ui', 'utilities', 'core', 'shared'],\n  },\n  services: {\n    type: 'service',\n    description: 'Backend services, APIs, and workers',\n    subcategories: ['api', 'workers', 'handlers', 'middleware'],\n  },\n  features: {\n    type: 'feature',\n    description: 'Product features and capabilities',\n    subcategories: ['core', 'advanced', 'experimental'],\n  },\n  integrations: {\n    type: 'integration',\n    description: 'External integrations and adapters',\n    subcategories: ['databases', 'auth', 'storage', 'monitoring', 'third-party'],\n  },\n  standards: {\n    type: 'standard',\n    description: 'Coding standards, conventions, and best practices',\n    subcategories: ['coding', 'documentation', 'testing', 'security'],\n  },\n  guides: {\n    type: 'guide',\n    description: 'How-to guides and tutorials',\n    subcategories: ['getting-started', 'tutorials', 'troubleshooting', 'deployment'],\n  },\n  references: {\n    type: 'technical',\n    description: 'API references and technical documentation',\n    subcategories: ['api', 'cli', 'config', 'schemas'],\n  },\n};\n\n/**\n * Analyze and migrate documentation to weave-nn structure\n */\nexport async function analyzeDocs(options: AnalyzerOptions): Promise<AnalyzerResult> {\n  const {\n    sourceDir,\n    targetDir = 'docs-nn',\n    projectRoot,\n    useClaudeFlow = false,\n    createMOC = true,\n    linkOriginal = true,\n    maxDepth = 3,\n    dryRun = false,\n    verbose = false,\n  } = options;\n\n  const result: AnalyzerResult = {\n    success: true,\n    filesAnalyzed: 0,\n    filesCreated: 0,\n    mocFilesCreated: 0,\n    errors: [],\n    analyzed: [],\n    structure: new Map(),\n  };\n\n  const sourcePath = join(projectRoot, sourceDir);\n  const targetPath = join(projectRoot, targetDir);\n\n  // Validate source exists\n  if (!existsSync(sourcePath)) {\n    result.success = false;\n    result.errors.push(`Source directory not found: ${sourcePath}`);\n    return result;\n  }\n\n  // Create target structure\n  if (!dryRun) {\n    createFullStructure(targetPath);\n  }\n\n  // Find all markdown files\n  const files = await fg('**/*.md', {\n    cwd: sourcePath,\n    ignore: ['node_modules/**', '.git/**', '_templates/**', 'docs-nn/**'],\n  });\n\n  // First pass: Analyze all documents\n  const analyzedDocs: AnalyzedDoc[] = [];\n\n  for (const file of files) {\n    result.filesAnalyzed++;\n    const sourceFile = join(sourcePath, file);\n\n    try {\n      const analyzed = await analyzeDocument(sourceFile, file, sourcePath, {\n        useClaudeFlow,\n        linkOriginal,\n        verbose,\n      });\n      analyzedDocs.push(analyzed);\n\n      // Track structure\n      const category = analyzed.category.split('/')[0];\n      if (!result.structure.has(category)) {\n        result.structure.set(category, []);\n      }\n      result.structure.get(category)!.push(analyzed.title);\n\n    } catch (error) {\n      result.errors.push(`Failed to analyze ${file}: ${error}`);\n    }\n  }\n\n  // Build cross-references between documents\n  buildCrossReferences(analyzedDocs);\n\n  // Second pass: Create new documents\n  for (const doc of analyzedDocs) {\n    try {\n      const targetFile = join(targetPath, doc.newPath);\n\n      if (!dryRun) {\n        mkdirSync(dirname(targetFile), { recursive: true });\n        const content = generateKnowledgeDoc(doc, sourceDir, linkOriginal, analyzedDocs);\n        writeFileSync(targetFile, content, 'utf-8');\n      }\n\n      result.filesCreated++;\n      result.analyzed.push(doc);\n\n    } catch (error) {\n      result.errors.push(`Failed to create ${doc.newPath}: ${error}`);\n    }\n  }\n\n  // Create MOC files for each category\n  if (createMOC && !dryRun) {\n    for (const [category, docs] of result.structure) {\n      const mocPath = join(targetPath, category, '_MOC.md');\n      const mocContent = generateMOC(category, docs, analyzedDocs);\n      writeFileSync(mocPath, mocContent, 'utf-8');\n      result.mocFilesCreated++;\n    }\n\n    // Create master MOC\n    const masterMocPath = join(targetPath, 'MOC.md');\n    const masterMocContent = generateMasterMOC(result.structure, analyzedDocs);\n    writeFileSync(masterMocPath, masterMocContent, 'utf-8');\n    result.mocFilesCreated++;\n\n    // Create PRIMITIVES.md\n    const primitivesPath = join(targetPath, 'PRIMITIVES.md');\n    const primitivesContent = generatePrimitives(analyzedDocs);\n    writeFileSync(primitivesPath, primitivesContent, 'utf-8');\n  }\n\n  result.success = result.errors.length === 0;\n  return result;\n}\n\n/**\n * Analyze a single document\n */\nasync function analyzeDocument(\n  filePath: string,\n  relativePath: string,\n  sourcePath: string,\n  options: { useClaudeFlow?: boolean; linkOriginal?: boolean; verbose?: boolean }\n): Promise<AnalyzedDoc> {\n  const content = readFileSync(filePath, 'utf-8');\n  const { data: existingFrontmatter, content: body } = matter(content);\n\n  const filename = basename(filePath, '.md');\n  const title = existingFrontmatter.title as string || formatTitle(filename);\n\n  // Detect node type and category\n  const { type, category } = detectTypeAndCategory(relativePath, body, existingFrontmatter);\n\n  // Extract tags\n  const tags = extractAllTags(body, existingFrontmatter, relativePath);\n\n  // Extract wikilinks and markdown links\n  const related = extractLinks(body);\n\n  // Extract key concepts\n  const concepts = extractConcepts(body);\n\n  // Find areas needing research\n  const researchNeeded = findResearchAreas(body, filename);\n\n  // Extract existing TODOs and generate new ones\n  const todos = extractAndGenerateTodos(body, content, filename);\n\n  // Generate summary\n  const summary = generateSummary(body, existingFrontmatter);\n\n  // Determine new path\n  const newPath = join(category, formatFilename(filename) + '.md');\n\n  return {\n    originalPath: relativePath,\n    newPath,\n    title,\n    type,\n    tags,\n    related,\n    concepts,\n    researchNeeded,\n    todos,\n    summary,\n    category,\n  };\n}\n\n/**\n * Create full target directory structure\n */\nfunction createFullStructure(targetPath: string): void {\n  // Create all category directories and subcategories\n  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {\n    mkdirSync(join(targetPath, category), { recursive: true });\n    for (const sub of config.subcategories) {\n      mkdirSync(join(targetPath, category, sub), { recursive: true });\n    }\n  }\n\n  // Create meta directories\n  mkdirSync(join(targetPath, '_templates'), { recursive: true });\n  mkdirSync(join(targetPath, '_attachments'), { recursive: true });\n  mkdirSync(join(targetPath, '_archive'), { recursive: true });\n}\n\n/**\n * Detect node type and category from content\n */\nfunction detectTypeAndCategory(\n  filePath: string,\n  content: string,\n  frontmatter: Record<string, unknown>\n): { type: NodeType; category: string } {\n  // Check frontmatter first\n  if (frontmatter.type && frontmatter.category) {\n    return {\n      type: frontmatter.type as NodeType,\n      category: frontmatter.category as string,\n    };\n  }\n\n  const lowerContent = content.toLowerCase();\n  const lowerPath = filePath.toLowerCase();\n\n  // Score each category\n  const scores: Record<string, number> = {};\n\n  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {\n    scores[category] = 0;\n\n    // Path matching\n    if (lowerPath.includes(category)) scores[category] += 10;\n    for (const sub of config.subcategories) {\n      if (lowerPath.includes(sub)) scores[category] += 5;\n    }\n\n    // Content analysis based on type\n    const keywords = getKeywordsForType(config.type);\n    for (const keyword of keywords) {\n      const regex = new RegExp(`\\\\b${keyword}\\\\b`, 'gi');\n      const matches = content.match(regex);\n      if (matches) scores[category] += matches.length;\n    }\n  }\n\n  // Find best match\n  let bestCategory = 'concepts';\n  let bestScore = 0;\n\n  for (const [category, score] of Object.entries(scores)) {\n    if (score > bestScore) {\n      bestScore = score;\n      bestCategory = category;\n    }\n  }\n\n  return {\n    type: CATEGORY_STRUCTURE[bestCategory].type,\n    category: bestCategory,\n  };\n}\n\n/**\n * Get keywords for a node type\n */\nfunction getKeywordsForType(type: NodeType): string[] {\n  const keywords: Record<NodeType, string[]> = {\n    concept: ['concept', 'theory', 'principle', 'overview', 'introduction', 'architecture', 'design', 'pattern'],\n    technical: ['component', 'implementation', 'class', 'function', 'module', 'utility', 'helper'],\n    feature: ['feature', 'capability', 'functionality', 'user', 'requirement', 'use case'],\n    primitive: ['library', 'framework', 'dependency', 'tool', 'sdk'],\n    service: ['api', 'endpoint', 'service', 'server', 'backend', 'worker', 'handler'],\n    guide: ['how to', 'tutorial', 'guide', 'step', 'walkthrough', 'getting started'],\n    standard: ['standard', 'convention', 'best practice', 'rule', 'guideline', 'style'],\n    integration: ['integration', 'connect', 'plugin', 'adapter', 'sync', 'import', 'export'],\n  };\n\n  return keywords[type] || [];\n}\n\n/**\n * Extract all tags from content and path\n */\nfunction extractAllTags(\n  content: string,\n  frontmatter: Record<string, unknown>,\n  filePath: string\n): string[] {\n  const tags = new Set<string>();\n\n  // Add existing frontmatter tags\n  if (Array.isArray(frontmatter.tags)) {\n    frontmatter.tags.forEach(t => tags.add(String(t)));\n  }\n\n  // Extract #tags from content\n  const hashTags = content.match(/#[\\w-]+/g);\n  if (hashTags) {\n    hashTags.forEach(t => tags.add(t.slice(1)));\n  }\n\n  // Generate tags from path\n  const pathParts = filePath.split('/').filter(p => p && !p.endsWith('.md'));\n  pathParts.forEach(p => {\n    if (p.length > 2 && p.length < 20) {\n      tags.add(p.replace(/[-_]/g, '-').toLowerCase());\n    }\n  });\n\n  // Add status tags\n  if (content.match(/\\b(wip|draft|todo)\\b/i)) tags.add('needs-work');\n  if (content.match(/\\b(deprecated|legacy)\\b/i)) tags.add('deprecated');\n  if (content.match(/\\b(experimental|beta)\\b/i)) tags.add('experimental');\n\n  return [...tags].slice(0, 15);\n}\n\n/**\n * Extract wikilinks and markdown links\n */\nfunction extractLinks(content: string): string[] {\n  const links = new Set<string>();\n\n  // Wikilinks\n  const wikilinks = content.match(/\\[\\[([^\\]|]+)(?:\\|[^\\]]+)?\\]\\]/g);\n  if (wikilinks) {\n    wikilinks.forEach(link => {\n      const match = link.match(/\\[\\[([^\\]|]+)/);\n      if (match) links.add(match[1].trim());\n    });\n  }\n\n  // Markdown links (internal only)\n  const mdLinks = content.match(/\\[([^\\]]+)\\]\\(([^)]+)\\)/g);\n  if (mdLinks) {\n    mdLinks.forEach(link => {\n      const match = link.match(/\\]\\(([^)]+)\\)/);\n      if (match && !match[1].startsWith('http')) {\n        links.add(match[1].replace(/\\.md$/, '').trim());\n      }\n    });\n  }\n\n  return [...links];\n}\n\n/**\n * Extract key concepts from content\n */\nfunction extractConcepts(content: string): string[] {\n  const concepts: string[] = [];\n\n  // Look for headers as concepts\n  const headers = content.match(/^##\\s+(.+)$/gm);\n  if (headers) {\n    headers.slice(0, 5).forEach(h => {\n      concepts.push(h.replace(/^##\\s+/, '').trim());\n    });\n  }\n\n  // Look for bold terms as concepts\n  const boldTerms = content.match(/\\*\\*([^*]+)\\*\\*/g);\n  if (boldTerms) {\n    boldTerms.slice(0, 5).forEach(term => {\n      const clean = term.replace(/\\*\\*/g, '').trim();\n      if (clean.length > 2 && clean.length < 50) {\n        concepts.push(clean);\n      }\n    });\n  }\n\n  return [...new Set(concepts)].slice(0, 10);\n}\n\n/**\n * Find areas needing research\n */\nfunction findResearchAreas(content: string, filename: string): string[] {\n  const areas: string[] = [];\n\n  // Look for question marks indicating uncertainty\n  const questions = content.match(/[^.!?]*\\?/g);\n  if (questions) {\n    questions.slice(0, 3).forEach(q => {\n      if (q.length > 10 && q.length < 200) {\n        areas.push(q.trim());\n      }\n    });\n  }\n\n  // Look for placeholders\n  if (content.match(/\\bTBD\\b|\\bTODO\\b|\\bFIXME\\b/i)) {\n    areas.push('Contains placeholders that need completion');\n  }\n\n  // Look for empty sections\n  const emptyHeaders = content.match(/^##[^#\\n]+\\n\\n##/gm);\n  if (emptyHeaders) {\n    areas.push('Has empty sections that need content');\n  }\n\n  // Check for missing content indicators\n  if (content.length < 500) {\n    areas.push('Document is short - may need expansion');\n  }\n\n  return areas;\n}\n\n/**\n * Extract and generate TODOs\n */\nfunction extractAndGenerateTodos(body: string, fullContent: string, filename: string): string[] {\n  const todos: string[] = [];\n\n  // Extract existing TODOs\n  const existingTodos = fullContent.match(/[-*]\\s*\\[[ x]\\]\\s*(.+)/g);\n  if (existingTodos) {\n    existingTodos.forEach(todo => {\n      todos.push(todo.replace(/^[-*]\\s*\\[[ x]\\]\\s*/, '').trim());\n    });\n  }\n\n  // Extract TODO comments\n  const todoComments = fullContent.match(/(?:TODO|FIXME|XXX):\\s*(.+)/gi);\n  if (todoComments) {\n    todoComments.forEach(todo => {\n      todos.push(todo.replace(/^(?:TODO|FIXME|XXX):\\s*/i, '').trim());\n    });\n  }\n\n  // Generate suggested TODOs based on analysis\n  if (!fullContent.match(/^---[\\s\\S]*?---/)) {\n    todos.push('Add proper frontmatter');\n  }\n\n  if (!fullContent.match(/\\[\\[/)) {\n    todos.push('Add wikilinks to related documents');\n  }\n\n  if (!fullContent.match(/^##\\s/m)) {\n    todos.push('Add section structure with headers');\n  }\n\n  return [...new Set(todos)].slice(0, 10);\n}\n\n/**\n * Generate summary from content\n */\nfunction generateSummary(body: string, frontmatter: Record<string, unknown>): string {\n  // Use existing description\n  if (frontmatter.description) {\n    return String(frontmatter.description);\n  }\n\n  // Extract first meaningful paragraph\n  const lines = body.split('\\n');\n  for (const line of lines) {\n    const trimmed = line.trim();\n    if (trimmed && !trimmed.startsWith('#') && !trimmed.startsWith('```') && trimmed.length > 30) {\n      return trimmed.length > 200 ? trimmed.slice(0, 197) + '...' : trimmed;\n    }\n  }\n\n  return 'Documentation requiring summary.';\n}\n\n/**\n * Build cross-references between documents\n */\nfunction buildCrossReferences(docs: AnalyzedDoc[]): void {\n  const titleMap = new Map<string, AnalyzedDoc>();\n\n  // Build title lookup\n  docs.forEach(doc => {\n    titleMap.set(doc.title.toLowerCase(), doc);\n    titleMap.set(formatFilename(doc.title), doc);\n  });\n\n  // Update related links\n  docs.forEach(doc => {\n    const newRelated: string[] = [];\n\n    doc.related.forEach(link => {\n      const linkedDoc = titleMap.get(link.toLowerCase()) || titleMap.get(formatFilename(link));\n      if (linkedDoc) {\n        newRelated.push(linkedDoc.title);\n      } else {\n        newRelated.push(link);\n      }\n    });\n\n    // Find related docs by shared tags\n    const sharedTagDocs = docs.filter(other =>\n      other !== doc &&\n      other.tags.some(t => doc.tags.includes(t))\n    );\n\n    sharedTagDocs.slice(0, 3).forEach(other => {\n      if (!newRelated.includes(other.title)) {\n        newRelated.push(other.title);\n      }\n    });\n\n    doc.related = [...new Set(newRelated)].slice(0, 10);\n  });\n}\n\n/**\n * Generate knowledge document content\n */\nfunction generateKnowledgeDoc(\n  doc: AnalyzedDoc,\n  sourceDir: string,\n  linkOriginal: boolean,\n  allDocs: AnalyzedDoc[]\n): string {\n  const lines: string[] = [];\n\n  // Frontmatter\n  lines.push('---');\n  lines.push(`title: \"${doc.title}\"`);\n  lines.push(`type: ${doc.type}`);\n  lines.push(`status: active`);\n  if (doc.tags.length > 0) {\n    lines.push('tags:');\n    doc.tags.forEach(tag => lines.push(`  - ${tag}`));\n  }\n  lines.push(`category: ${doc.category}`);\n  lines.push(`description: \"${doc.summary.replace(/\"/g, '\\\\\"')}\"`);\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push(`updated: ${new Date().toISOString().split('T')[0]}`);\n  if (linkOriginal) {\n    lines.push(`original: \"${sourceDir}/${doc.originalPath}\"`);\n  }\n  if (doc.related.length > 0) {\n    lines.push('related:');\n    doc.related.slice(0, 5).forEach(r => lines.push(`  - \"[[${r}]]\"`));\n  }\n  lines.push('---');\n  lines.push('');\n\n  // Title\n  lines.push(`# ${doc.title}`);\n  lines.push('');\n\n  // Summary\n  lines.push('## Overview');\n  lines.push('');\n  lines.push(doc.summary);\n  lines.push('');\n\n  // Original reference\n  if (linkOriginal) {\n    lines.push(`> [!info] Original Documentation`);\n    lines.push(`> See [[${sourceDir}/${doc.originalPath}|original document]] for full details.`);\n    lines.push('');\n  }\n\n  // Key concepts\n  if (doc.concepts.length > 0) {\n    lines.push('## Key Concepts');\n    lines.push('');\n    doc.concepts.forEach(concept => {\n      lines.push(`- **${concept}**`);\n    });\n    lines.push('');\n  }\n\n  // Related documents\n  if (doc.related.length > 0) {\n    lines.push('## Related');\n    lines.push('');\n    doc.related.forEach(rel => {\n      lines.push(`- [[${rel}]]`);\n    });\n    lines.push('');\n  }\n\n  // Research needed\n  if (doc.researchNeeded.length > 0) {\n    lines.push('## Research Needed');\n    lines.push('');\n    lines.push('> [!warning] Areas Requiring Further Research');\n    doc.researchNeeded.forEach(area => {\n      lines.push(`> - ${area}`);\n    });\n    lines.push('');\n  }\n\n  // TODOs\n  if (doc.todos.length > 0) {\n    lines.push('## TODOs');\n    lines.push('');\n    doc.todos.forEach(todo => {\n      lines.push(`- [ ] ${todo}`);\n    });\n    lines.push('');\n  }\n\n  // Tags section\n  lines.push('## Tags');\n  lines.push('');\n  lines.push(doc.tags.map(t => `#${t}`).join(' '));\n  lines.push('');\n\n  return lines.join('\\n');\n}\n\n/**\n * Generate MOC (Map of Content) for a category\n */\nfunction generateMOC(category: string, docTitles: string[], allDocs: AnalyzedDoc[]): string {\n  const config = CATEGORY_STRUCTURE[category];\n  const categoryDocs = allDocs.filter(d => d.category.startsWith(category));\n\n  const lines: string[] = [];\n\n  lines.push('---');\n  lines.push(`title: \"${formatTitle(category)} - Map of Content\"`);\n  lines.push('type: concept');\n  lines.push('status: active');\n  lines.push('tags:');\n  lines.push('  - moc');\n  lines.push(`  - ${category}`);\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push('---');\n  lines.push('');\n  lines.push(`# ${formatTitle(category)}`);\n  lines.push('');\n  lines.push(config?.description || `Documentation related to ${category}.`);\n  lines.push('');\n\n  // Group by subcategory\n  const bySubcategory = new Map<string, AnalyzedDoc[]>();\n  categoryDocs.forEach(doc => {\n    const parts = doc.category.split('/');\n    const sub = parts[1] || 'general';\n    if (!bySubcategory.has(sub)) {\n      bySubcategory.set(sub, []);\n    }\n    bySubcategory.get(sub)!.push(doc);\n  });\n\n  for (const [sub, docs] of bySubcategory) {\n    lines.push(`## ${formatTitle(sub)}`);\n    lines.push('');\n    docs.forEach(doc => {\n      lines.push(`- [[${doc.title}]] - ${doc.summary.slice(0, 60)}...`);\n    });\n    lines.push('');\n  }\n\n  lines.push('---');\n  lines.push(`*${categoryDocs.length} documents in this category*`);\n\n  return lines.join('\\n');\n}\n\n/**\n * Generate master MOC\n */\nfunction generateMasterMOC(structure: Map<string, string[]>, allDocs: AnalyzedDoc[]): string {\n  const lines: string[] = [];\n\n  lines.push('---');\n  lines.push('title: \"Knowledge Graph - Master Index\"');\n  lines.push('type: concept');\n  lines.push('status: active');\n  lines.push('tags:');\n  lines.push('  - moc');\n  lines.push('  - index');\n  lines.push('  - knowledge-graph');\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push('---');\n  lines.push('');\n  lines.push('# Knowledge Graph');\n  lines.push('');\n  lines.push('Welcome to the knowledge graph. This is the master index of all documentation.');\n  lines.push('');\n  lines.push('## Categories');\n  lines.push('');\n\n  for (const [category, config] of Object.entries(CATEGORY_STRUCTURE)) {\n    const count = structure.get(category)?.length || 0;\n    lines.push(`### [[${category}/_MOC|${formatTitle(category)}]]`);\n    lines.push('');\n    lines.push(`${config.description}`);\n    lines.push(`*${count} documents*`);\n    lines.push('');\n  }\n\n  lines.push('## Quick Links');\n  lines.push('');\n  lines.push('- [[PRIMITIVES]] - Core building blocks and technologies');\n  lines.push('- [[guides/_MOC|Getting Started]]');\n  lines.push('- [[standards/_MOC|Coding Standards]]');\n  lines.push('');\n\n  lines.push('## Statistics');\n  lines.push('');\n  lines.push(`- **Total Documents**: ${allDocs.length}`);\n  lines.push(`- **Categories**: ${structure.size}`);\n  lines.push(`- **Generated**: ${new Date().toISOString()}`);\n  lines.push('');\n\n  return lines.join('\\n');\n}\n\n/**\n * Generate PRIMITIVES.md\n */\nfunction generatePrimitives(allDocs: AnalyzedDoc[]): string {\n  const lines: string[] = [];\n\n  lines.push('---');\n  lines.push('title: \"Primitives\"');\n  lines.push('type: primitive');\n  lines.push('status: active');\n  lines.push('tags:');\n  lines.push('  - primitives');\n  lines.push('  - foundation');\n  lines.push('  - knowledge-graph');\n  lines.push(`created: ${new Date().toISOString().split('T')[0]}`);\n  lines.push('---');\n  lines.push('');\n  lines.push('# Primitives');\n  lines.push('');\n  lines.push('Core building blocks and foundational technologies used in this project.');\n  lines.push('');\n\n  // Group docs by type\n  const byType = new Map<NodeType, AnalyzedDoc[]>();\n  allDocs.forEach(doc => {\n    if (!byType.has(doc.type)) {\n      byType.set(doc.type, []);\n    }\n    byType.get(doc.type)!.push(doc);\n  });\n\n  for (const [type, docs] of byType) {\n    lines.push(`## ${formatTitle(type)}`);\n    lines.push('');\n    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