@vpxa/aikit 0.1.108 → 0.1.110

package/packages/store/dist/index.d.ts

@@ -253,15 +253,26 @@ declare class LanceStore implements IKnowledgeStore {
 //#endregion
 //#region packages/store/src/sqlite-adapter.d.ts
 /**
- * SQLite adapter abstraction backed by sql.js (WASM).
+ * SQLite adapter — selects between native better-sqlite3 (preferred) and
+ * sql.js (WASM fallback). The fallback exists because better-sqlite3 is a
+ * native module whose prebuilt binary is not available in every environment
+ * (Codespaces, restricted CI, mismatched Node ABI).
  *
- * The database stays memory-resident while open and is exported back to disk
- * on flush/close so callers keep the same single-file persistence model.
+ * better-sqlite3 also lets us load the sqlite-vec extension, which sql.js
+ * (running inside a WASM sandbox) cannot dlopen. When we fall back, vector
+ * search is unavailable and the consumer (SqliteVecStore) downgrades to
+ * FTS-only mode loudly.
  */
-type SqliteAdapterType = 'sql.js';
+type SqliteAdapterType = 'better-sqlite3' | 'sql.js';
 interface ISqliteAdapter {
   /** Which adapter implementation is active */
   readonly type: SqliteAdapterType;
+  /**
+   * True when the underlying engine can execute vector-search queries
+   * (better-sqlite3 with the sqlite-vec extension loaded). False on sql.js
+   * or when extension loading failed.
+   */
+  readonly vectorCapable: boolean;
   /** Open or create the database at the given file path */
   open(dbPath: string): Promise<void>;
   /** Execute DDL or multi-statement SQL (CREATE TABLE, BEGIN, COMMIT, etc.) */
@@ -277,16 +288,41 @@ interface ISqliteAdapter {
   /** Close the database connection */
   close(): void;
 }
-/** Create the project's SQLite adapter. */
+/**
+ * Create the project's SQLite adapter.
+ *
+ * Prefers better-sqlite3 (native, mmap-backed, supports sqlite-vec). Falls
+ * back to sql.js (WASM, vector search disabled) if the native binary cannot
+ * be loaded — typically because the platform has no prebuild and the native
+ * compile failed during install. In that case the consumer should disable
+ * vector-dependent code paths via `adapter.vectorCapable`.
+ */
 declare function createSqliteAdapter(dbPath: string): Promise<ISqliteAdapter>;
+/**
+ * Force-create a sql.js adapter (used by tests that need to assert fallback
+ * behavior without monkey-patching `require`).
+ */
+declare function createSqlJsAdapter(dbPath: string): Promise<ISqliteAdapter>;
 //#endregion
 //#region packages/store/src/sqlite-graph-store.d.ts
 declare class SqliteGraphStore implements IGraphStore {
   private adapter;
   private reopenPromise;
   private readonly dbPath;
+  private readonly externalAdapter;
+  /**
+   * Create a graph store backed by SQLite.
+   *
+   * Two construction modes:
+   *  - `{ path }` — creates and owns its own adapter at `<path>/graph.db`.
+   *    Used standalone (legacy).
+   *  - `{ adapter }` — uses an externally-managed adapter that is shared with
+   *    other stores (e.g. `SqliteVecStore`). The caller owns the adapter
+   *    lifecycle and must have already configured pragmas.
+   */
   constructor(options?: {
     path?: string;
+    adapter?: ISqliteAdapter;
   });
   initialize(): Promise<void>;
   private configureAdapter;
@@ -336,13 +372,83 @@ declare class SqliteGraphStore implements IGraphStore {
   close(): Promise<void>;
 }
 //#endregion
+//#region packages/store/src/sqlite-vec-store.d.ts
+interface SqliteVecStoreOptions {
+  /** Path to the .db file (file is created if missing) */
+  path?: string;
+  /** Embedding dimension — must match the embedder configuration */
+  embeddingDim?: number;
+  /** Externally-managed adapter (shared with graph store). When omitted, the store creates its own. */
+  adapter?: ISqliteAdapter;
+}
+declare class SqliteVecStore implements IKnowledgeStore {
+  private adapter;
+  private readonly externalAdapter;
+  private readonly dbPath;
+  private readonly embeddingDim;
+  private vectorEnabled;
+  private warnedVectorDisabled;
+  private _draining;
+  private _priorityQueue;
+  private _normalQueue;
+  constructor(options?: SqliteVecStoreOptions);
+  initialize(): Promise<void>;
+  /**
+   * Diagnostics for the status tool. Returns runtime info about the underlying
+   * adapter and DB file (read-only; safe to call after initialize()).
+   */
+  getDiagnostics(): {
+    adapterType: string;
+    vectorSearchEnabled: boolean;
+    degradedMode: boolean;
+    dbPath: string;
+    dbSizeBytes: number | null;
+    embeddingDim: number;
+  };
+  private createKnowledgeTable;
+  private createFtsTable;
+  private ensureVecTable;
+  private enqueueWrite;
+  private _drain;
+  upsert(records: KnowledgeRecord[], vectors: Float32Array[]): Promise<void>;
+  upsertInteractive(records: KnowledgeRecord[], vectors: Float32Array[]): Promise<void>;
+  private _upsertImpl;
+  search(queryVector: Float32Array, options?: SearchOptions): Promise<SearchResult[]>;
+  ftsSearch(query: string, options?: SearchOptions): Promise<SearchResult[]>;
+  getById(id: string): Promise<KnowledgeRecord | null>;
+  deleteBySourcePath(sourcePath: string): Promise<number>;
+  private _deleteBySourcePathImpl;
+  deleteById(id: string): Promise<boolean>;
+  deleteByIdInteractive(id: string): Promise<boolean>;
+  private _deleteByIdImpl;
+  getBySourcePath(sourcePath: string): Promise<KnowledgeRecord[]>;
+  getStats(): Promise<IndexStats>;
+  listSourcePaths(): Promise<string[]>;
+  createFtsIndex(): Promise<void>;
+  dropTable(): Promise<void>;
+  private _dropTableImpl;
+  close(): Promise<void>;
+  private getAdapter;
+  /**
+   * Build a SQL filter suffix from SearchOptions.
+   * @param whereOnly when true the caller already has a WHERE clause and we emit `AND ...`
+   *                  otherwise we emit `WHERE ...`.
+   */
+  private buildFilterSqlSuffix;
+  private fromRow;
+}
+//#endregion
 //#region packages/store/src/store-factory.d.ts
 type StoreBackend = 'lancedb' | 'sqlite-vec';
 interface StoreConfig {
   backend: StoreBackend;
   path: string;
   options?: Record<string, unknown>;
+  /** Optional shared adapter (only used by the sqlite-vec backend) */
+  adapter?: ISqliteAdapter;
+  /** Embedding dimension (only used by the sqlite-vec backend) */
+  embeddingDim?: number;
 }
 declare function createStore(config: StoreConfig): Promise<IKnowledgeStore>;
 //#endregion
-export { type DepthGroupedResult, type GraphEdge, type GraphNode, type GraphStats, type GraphTraversalOptions, type GraphTraversalResult, type GraphValidationResult, type IGraphStore, type IKnowledgeStore, type ISqliteAdapter, LanceStore, type ProcessInfo, type SearchOptions, type SqliteAdapterType, SqliteGraphStore, type StoreBackend, type StoreConfig, type Symbol360, createSqliteAdapter, createStore };
+export { type DepthGroupedResult, type GraphEdge, type GraphNode, type GraphStats, type GraphTraversalOptions, type GraphTraversalResult, type GraphValidationResult, type IGraphStore, type IKnowledgeStore, type ISqliteAdapter, LanceStore, type ProcessInfo, type SearchOptions, type SqliteAdapterType, SqliteGraphStore, SqliteVecStore, type SqliteVecStoreOptions, type StoreBackend, type StoreConfig, type Symbol360, createSqlJsAdapter, createSqliteAdapter, createStore };

package/packages/store/dist/index.js

@@ -1,4 +1,4 @@
-import{t as e}from"./lance-store-CQkljFy3.js";import{createRequire as t}from"node:module";import{AIKIT_PATHS as n}from"../../core/dist/index.js";import{existsSync as r,mkdirSync as i,readFileSync as a,renameSync as o,unlinkSync as s,writeFileSync as c}from"node:fs";import{dirname as l,join as u}from"node:path";const d=t(import.meta.url);function f(e){return d.resolve(`sql.js/dist/${e}`)}var p=class{type=`sql.js`;db=null;dbPath=``;dirty=!1;inTransaction=!1;async open(e){this.dbPath=e;let t=(await import(`sql.js`)).default,n=await t({locateFile:e=>f(e)});if(r(e)){let t=a(e);this.db=new n.Database(t)}else this.db=new n.Database}exec(e){let t=e.trimStart().toUpperCase();this.getDb().run(e),t.startsWith(`BEGIN`)?this.inTransaction=!0:(t.startsWith(`COMMIT`)||t.startsWith(`ROLLBACK`))&&(this.inTransaction=!1),this.dirty=!0}pragma(e){this.getDb().exec(`PRAGMA ${e}`)}queryAll(e,t=[]){let n=this.getDb().prepare(e);try{t.length>0&&n.bind(t);let e=[];for(;n.step();)e.push(n.getAsObject());return e}finally{n.free()}}run(e,t=[]){let n=this.getDb(),r=e.trimStart().toUpperCase(),i=!this.inTransaction&&(r.startsWith(`INSERT`)||r.startsWith(`UPDATE`));i&&n.run(`SAVEPOINT fk_check`);try{if(t.length>0){let r=n.prepare(e);try{r.bind(t),r.step()}finally{r.free()}}else n.run(e);if(i){if(n.exec(`PRAGMA foreign_key_check`).length>0)throw n.run(`ROLLBACK TO fk_check`),n.run(`RELEASE fk_check`),Error(`FOREIGN KEY constraint failed`);n.run(`RELEASE fk_check`)}}catch(e){if(i)try{n.run(`ROLLBACK TO fk_check`),n.run(`RELEASE fk_check`)}catch{}throw e}this.dirty=!0}flush(){if(!this.dirty||!this.db)return;let e=this.db.export(),t=`${this.dbPath}.tmp`;c(t,Buffer.from(e)),o(t,this.dbPath),this.dirty=!1}close(){if(this.db){let e=this.db,t;try{this.flush()}catch(e){t=e;try{s(`${this.dbPath}.tmp`)}catch{}}try{e.close()}finally{this.db=null}if(t)throw t}}getDb(){if(!this.db)throw Error(`SqlJsAdapter: database not opened`);return this.db}};async function m(e){let t=new p;try{return await t.open(e),t}catch(e){let t=e instanceof Error?e.message:String(e);throw Error(`[aikit] SQLite adapter "sql.js" failed to load: ${t}`)}}var h=class{adapter=null;reopenPromise=null;dbPath;constructor(e){let t=e?.path??n.data;this.dbPath=u(t,`graph.db`)}async initialize(){let e=l(this.dbPath);r(e)||i(e,{recursive:!0}),this.adapter=await m(this.dbPath),this.configureAdapter(this.adapter),this.createTables(this.adapter),this.migrateSchema(this.adapter),this.adapter.flush()}configureAdapter(e){e.pragma(`journal_mode = WAL`),e.pragma(`foreign_keys = ON`)}createTables(e){e.exec(`
+import{t as e}from"./lance-store-BRoi-4qY.js";import{i as t,r as n,t as r}from"./sqlite-vec-store-CfcO7e_I.js";import{AIKIT_PATHS as i}from"../../core/dist/index.js";import{existsSync as a,mkdirSync as o}from"node:fs";import{dirname as s,join as c}from"node:path";var l=class{adapter=null;reopenPromise=null;dbPath;externalAdapter;constructor(e={}){if(e.adapter)this.adapter=e.adapter,this.externalAdapter=!0,this.dbPath=``;else{let t=e.path??i.data;this.dbPath=c(t,`graph.db`),this.externalAdapter=!1}}async initialize(){if(this.externalAdapter){let e=this.getAdapter();this.createTables(e),this.migrateSchema(e),e.flush();return}let e=s(this.dbPath);a(e)||o(e,{recursive:!0}),this.adapter=await t(this.dbPath),this.configureAdapter(this.adapter),this.createTables(this.adapter),this.migrateSchema(this.adapter),this.adapter.flush()}configureAdapter(e){e.pragma(`journal_mode = WAL`),e.pragma(`foreign_keys = ON`)}createTables(e){e.exec(`
       CREATE TABLE IF NOT EXISTS nodes (
         id TEXT PRIMARY KEY,
         type TEXT NOT NULL,
@@ -39,7 +39,7 @@ import{t as e}from"./lance-store-CQkljFy3.js";import{createRequire as t}from"nod
         FOREIGN KEY (process_id) REFERENCES processes(id) ON DELETE CASCADE,
         FOREIGN KEY (node_id) REFERENCES nodes(id) ON DELETE CASCADE
       )
-    `),e.exec(`CREATE INDEX IF NOT EXISTS idx_process_steps_node ON process_steps(node_id)`)}migrateSchema(e){for(let t of[`ALTER TABLE edges ADD COLUMN confidence REAL DEFAULT 1.0`,`ALTER TABLE nodes ADD COLUMN community TEXT`])try{e.exec(t)}catch{}e.exec(`CREATE INDEX IF NOT EXISTS idx_nodes_community ON nodes(community)`)}getAdapter(){if(!this.adapter)throw Error(`SqliteGraphStore not initialized — call initialize() first`);return this.adapter}async ensureOpen(){if(this.adapter)return;if(this.reopenPromise)return this.reopenPromise;let e=this.reopenAdapter();this.reopenPromise=e;try{await e}finally{this.reopenPromise===e&&(this.reopenPromise=null)}}async reopenAdapter(){let e=await m(this.dbPath);this.configureAdapter(e),this.adapter=e}query(e,t=[]){return this.getAdapter().queryAll(e,t)}run(e,t=[]){this.getAdapter().run(e,t)}async upsertNode(e){await this.ensureOpen(),this.run(`INSERT INTO nodes (id, type, name, properties, source_record_id, source_path, created_at, community)
+    `),e.exec(`CREATE INDEX IF NOT EXISTS idx_process_steps_node ON process_steps(node_id)`)}migrateSchema(e){for(let t of[`ALTER TABLE edges ADD COLUMN confidence REAL DEFAULT 1.0`,`ALTER TABLE nodes ADD COLUMN community TEXT`])try{e.exec(t)}catch{}e.exec(`CREATE INDEX IF NOT EXISTS idx_nodes_community ON nodes(community)`)}getAdapter(){if(!this.adapter)throw Error(`SqliteGraphStore not initialized — call initialize() first`);return this.adapter}async ensureOpen(){if(this.adapter)return;if(this.externalAdapter)throw Error(`SqliteGraphStore: external adapter has been closed by its owner; cannot reopen`);if(this.reopenPromise)return this.reopenPromise;let e=this.reopenAdapter();this.reopenPromise=e;try{await e}finally{this.reopenPromise===e&&(this.reopenPromise=null)}}async reopenAdapter(){let e=await t(this.dbPath);this.configureAdapter(e),this.adapter=e}query(e,t=[]){return this.getAdapter().queryAll(e,t)}run(e,t=[]){this.getAdapter().run(e,t)}async upsertNode(e){await this.ensureOpen(),this.run(`INSERT INTO nodes (id, type, name, properties, source_record_id, source_path, created_at, community)
        VALUES (?, ?, ?, ?, ?, ?, ?, ?)
        ON CONFLICT(id) DO UPDATE SET
          type = excluded.type, name = excluded.name, properties = excluded.properties,
@@ -57,19 +57,19 @@ import{t as e}from"./lance-store-CQkljFy3.js";import{createRequire as t}from"nod
            VALUES (?, ?, ?, ?, ?, ?, ?)
            ON CONFLICT(id) DO UPDATE SET
              from_id = excluded.from_id, to_id = excluded.to_id,
-             type = excluded.type, weight = excluded.weight, confidence = excluded.confidence, properties = excluded.properties`,[t.id,t.fromId,t.toId,t.type,t.weight??1,t.confidence??1,JSON.stringify(t.properties??{})]);t.exec(`COMMIT`),t.flush()}catch(e){throw t.exec(`ROLLBACK`),e}finally{t.pragma(`foreign_keys = ON`)}}async getNode(e){await this.ensureOpen();let t=this.query(`SELECT * FROM nodes WHERE id = ?`,[e]);return t.length>0?_(t[0]):null}async getNeighbors(e,t){await this.ensureOpen();let n=t?.direction??`both`,r=t?.edgeType,i=t?.limit??50,a=[],o=[],s=new Set;if(n===`outgoing`||n===`both`){let t=`
+             type = excluded.type, weight = excluded.weight, confidence = excluded.confidence, properties = excluded.properties`,[t.id,t.fromId,t.toId,t.type,t.weight??1,t.confidence??1,JSON.stringify(t.properties??{})]);t.exec(`COMMIT`),t.flush()}catch(e){throw t.exec(`ROLLBACK`),e}finally{t.pragma(`foreign_keys = ON`)}}async getNode(e){await this.ensureOpen();let t=this.query(`SELECT * FROM nodes WHERE id = ?`,[e]);return t.length>0?d(t[0]):null}async getNeighbors(e,t){await this.ensureOpen();let n=t?.direction??`both`,r=t?.edgeType,i=t?.limit??50,a=[],o=[],s=new Set;if(n===`outgoing`||n===`both`){let t=`
           SELECT e.id AS edge_id, e.from_id, e.to_id, e.type AS edge_type, e.weight,
             e.confidence AS edge_confidence, e.properties AS edge_props,
              n.id AS node_id, n.type AS node_type, n.name AS node_name, n.properties AS node_props,
             n.source_record_id AS node_src_rec, n.source_path AS node_src_path,
             n.created_at AS node_created, n.community AS node_community
-      FROM edges e JOIN nodes n ON e.to_id = n.id WHERE e.from_id = ?`,n=[e];r&&(t+=` AND e.type = ?`,n.push(r)),t+=` LIMIT ?`,n.push(i);let c=this.query(t,n);for(let e of c)o.push(y(e)),s.has(e.node_id)||(s.add(e.node_id),a.push(b(e)))}if(n===`incoming`||n===`both`){let t=`
+      FROM edges e JOIN nodes n ON e.to_id = n.id WHERE e.from_id = ?`,n=[e];r&&(t+=` AND e.type = ?`,n.push(r)),t+=` LIMIT ?`,n.push(i);let c=this.query(t,n);for(let e of c)o.push(p(e)),s.has(e.node_id)||(s.add(e.node_id),a.push(m(e)))}if(n===`incoming`||n===`both`){let t=`
           SELECT e.id AS edge_id, e.from_id, e.to_id, e.type AS edge_type, e.weight,
             e.confidence AS edge_confidence, e.properties AS edge_props,
              n.id AS node_id, n.type AS node_type, n.name AS node_name, n.properties AS node_props,
             n.source_record_id AS node_src_rec, n.source_path AS node_src_path,
             n.created_at AS node_created, n.community AS node_community
-      FROM edges e JOIN nodes n ON e.from_id = n.id WHERE e.to_id = ?`,n=[e];r&&(t+=` AND e.type = ?`,n.push(r)),t+=` LIMIT ?`,n.push(i);let c=this.query(t,n);for(let e of c)o.push(y(e)),s.has(e.node_id)||(s.add(e.node_id),a.push(b(e)))}return{nodes:a,edges:o}}async traverse(e,t){await this.ensureOpen();let n=t?.maxDepth??2,r=t?.direction??`both`,i=t?.edgeType,a=t?.limit??50,o=new Map,s=new Map,c=new Set,l=[{nodeId:e,depth:0}];for(;l.length>0&&o.size<a;){let e=l.shift();if(!e||c.has(e.nodeId)||e.depth>n)continue;c.add(e.nodeId);let t=await this.getNeighbors(e.nodeId,{direction:r,edgeType:i,limit:a-o.size});for(let r of t.nodes)o.has(r.id)||(o.set(r.id,r),e.depth+1<n&&l.push({nodeId:r.id,depth:e.depth+1}));for(let e of t.edges)s.set(e.id,e)}return{nodes:[...o.values()],edges:[...s.values()]}}async findNodes(e){await this.ensureOpen();let t=[],n=[];e.type&&(t.push(`type = ?`),n.push(e.type)),e.namePattern&&(t.push(`name LIKE ?`),n.push(`%${e.namePattern}%`)),e.sourcePath&&(t.push(`source_path = ?`),n.push(e.sourcePath));let r=t.length>0?`WHERE ${t.join(` AND `)}`:``,i=e.limit??100;return this.query(`SELECT * FROM nodes ${r} LIMIT ?`,[...n,i]).map(e=>_(e))}async findEdges(e){await this.ensureOpen();let t=[],n=[];e.type&&(t.push(`type = ?`),n.push(e.type)),e.fromId&&(t.push(`from_id = ?`),n.push(e.fromId)),e.toId&&(t.push(`to_id = ?`),n.push(e.toId));let r=t.length>0?`WHERE ${t.join(` AND `)}`:``,i=e.limit??100;return this.query(`SELECT * FROM edges ${r} LIMIT ?`,[...n,i]).map(e=>v(e))}async deleteNode(e){await this.ensureOpen();let t=this.getAdapter();t.exec(`BEGIN TRANSACTION`);try{this.run(`DELETE FROM edges WHERE from_id = ? OR to_id = ?`,[e,e]),this.run(`DELETE FROM nodes WHERE id = ?`,[e]),t.exec(`COMMIT`),t.flush()}catch(e){throw t.exec(`ROLLBACK`),e}}async deleteBySourcePath(e){await this.ensureOpen();let t=this.query(`SELECT id FROM nodes WHERE source_path = ?`,[e]);if(t.length===0)return 0;let n=this.getAdapter();n.exec(`BEGIN TRANSACTION`);try{for(let e of t)this.run(`DELETE FROM edges WHERE from_id = ? OR to_id = ?`,[e.id,e.id]);this.run(`DELETE FROM nodes WHERE source_path = ?`,[e]),n.exec(`COMMIT`),n.flush()}catch(e){throw n.exec(`ROLLBACK`),e}return t.length}async clear(){await this.ensureOpen();let e=this.getAdapter();e.exec(`BEGIN TRANSACTION`);try{this.run(`DELETE FROM process_steps`),this.run(`DELETE FROM processes`),this.run(`DELETE FROM edges`),this.run(`DELETE FROM nodes`),e.exec(`COMMIT`)}catch(t){throw e.exec(`ROLLBACK`),t}e.flush()}async getStats(){await this.ensureOpen();let e=this.query(`SELECT COUNT(*) as count FROM nodes`)[0]?.count??0,t=this.query(`SELECT COUNT(*) as count FROM edges`)[0]?.count??0,n=this.query(`SELECT type, COUNT(*) as count FROM nodes GROUP BY type`),r={};for(let e of n)r[e.type]=e.count;let i=this.query(`SELECT type, COUNT(*) as count FROM edges GROUP BY type`),a={};for(let e of i)a[e.type]=e.count;return{nodeCount:e,edgeCount:t,nodeTypes:r,edgeTypes:a}}async validate(){await this.ensureOpen();let e=await this.getStats(),t=this.query(`SELECT e.id AS edgeId,
+      FROM edges e JOIN nodes n ON e.from_id = n.id WHERE e.to_id = ?`,n=[e];r&&(t+=` AND e.type = ?`,n.push(r)),t+=` LIMIT ?`,n.push(i);let c=this.query(t,n);for(let e of c)o.push(p(e)),s.has(e.node_id)||(s.add(e.node_id),a.push(m(e)))}return{nodes:a,edges:o}}async traverse(e,t){await this.ensureOpen();let n=t?.maxDepth??2,r=t?.direction??`both`,i=t?.edgeType,a=t?.limit??50,o=new Map,s=new Map,c=new Set,l=[{nodeId:e,depth:0}];for(;l.length>0&&o.size<a;){let e=l.shift();if(!e||c.has(e.nodeId)||e.depth>n)continue;c.add(e.nodeId);let t=await this.getNeighbors(e.nodeId,{direction:r,edgeType:i,limit:a-o.size});for(let r of t.nodes)o.has(r.id)||(o.set(r.id,r),e.depth+1<n&&l.push({nodeId:r.id,depth:e.depth+1}));for(let e of t.edges)s.set(e.id,e)}return{nodes:[...o.values()],edges:[...s.values()]}}async findNodes(e){await this.ensureOpen();let t=[],n=[];e.type&&(t.push(`type = ?`),n.push(e.type)),e.namePattern&&(t.push(`name LIKE ?`),n.push(`%${e.namePattern}%`)),e.sourcePath&&(t.push(`source_path = ?`),n.push(e.sourcePath));let r=t.length>0?`WHERE ${t.join(` AND `)}`:``,i=e.limit??100;return this.query(`SELECT * FROM nodes ${r} LIMIT ?`,[...n,i]).map(e=>d(e))}async findEdges(e){await this.ensureOpen();let t=[],n=[];e.type&&(t.push(`type = ?`),n.push(e.type)),e.fromId&&(t.push(`from_id = ?`),n.push(e.fromId)),e.toId&&(t.push(`to_id = ?`),n.push(e.toId));let r=t.length>0?`WHERE ${t.join(` AND `)}`:``,i=e.limit??100;return this.query(`SELECT * FROM edges ${r} LIMIT ?`,[...n,i]).map(e=>f(e))}async deleteNode(e){await this.ensureOpen();let t=this.getAdapter();t.exec(`BEGIN TRANSACTION`);try{this.run(`DELETE FROM edges WHERE from_id = ? OR to_id = ?`,[e,e]),this.run(`DELETE FROM nodes WHERE id = ?`,[e]),t.exec(`COMMIT`),t.flush()}catch(e){throw t.exec(`ROLLBACK`),e}}async deleteBySourcePath(e){await this.ensureOpen();let t=this.query(`SELECT id FROM nodes WHERE source_path = ?`,[e]);if(t.length===0)return 0;let n=this.getAdapter();n.exec(`BEGIN TRANSACTION`);try{for(let e of t)this.run(`DELETE FROM edges WHERE from_id = ? OR to_id = ?`,[e.id,e.id]);this.run(`DELETE FROM nodes WHERE source_path = ?`,[e]),n.exec(`COMMIT`),n.flush()}catch(e){throw n.exec(`ROLLBACK`),e}return t.length}async clear(){await this.ensureOpen();let e=this.getAdapter();e.exec(`BEGIN TRANSACTION`);try{this.run(`DELETE FROM process_steps`),this.run(`DELETE FROM processes`),this.run(`DELETE FROM edges`),this.run(`DELETE FROM nodes`),e.exec(`COMMIT`)}catch(t){throw e.exec(`ROLLBACK`),t}e.flush()}async getStats(){await this.ensureOpen();let e=this.query(`SELECT COUNT(*) as count FROM nodes`)[0]?.count??0,t=this.query(`SELECT COUNT(*) as count FROM edges`)[0]?.count??0,n=this.query(`SELECT type, COUNT(*) as count FROM nodes GROUP BY type`),r={};for(let e of n)r[e.type]=e.count;let i=this.query(`SELECT type, COUNT(*) as count FROM edges GROUP BY type`),a={};for(let e of i)a[e.type]=e.count;return{nodeCount:e,edgeCount:t,nodeTypes:r,edgeTypes:a}}async validate(){await this.ensureOpen();let e=await this.getStats(),t=this.query(`SELECT e.id AS edgeId,
               CASE
                 WHEN n1.id IS NULL THEN e.from_id
                 WHEN n2.id IS NULL THEN e.to_id
@@ -87,4 +87,4 @@ import{t as e}from"./lance-store-CQkljFy3.js";import{createRequire as t}from"nod
          VALUES (?, ?, ?, '{}', ?)`,[a,e,t,o]);for(let e=0;e<n.length;e++)this.run(`INSERT INTO process_steps (process_id, node_id, step_order) VALUES (?, ?, ?)`,[a,n[e],e]);s.exec(`COMMIT`),s.flush()}catch(e){throw s.exec(`ROLLBACK`),e}return{id:a,entryNodeId:e,label:t,properties:{},steps:n,createdAt:o}}async getProcesses(e){await this.ensureOpen();let t;t=e?this.query(`SELECT DISTINCT p.id, p.entry_node_id, p.label, p.properties, p.created_at
          FROM processes p
          JOIN process_steps ps ON p.id = ps.process_id
-         WHERE ps.node_id = ?`,[e]):this.query(`SELECT * FROM processes`);let n=[];for(let e of t){let t=this.query(`SELECT node_id FROM process_steps WHERE process_id = ? ORDER BY step_order`,[e.id]);n.push({id:e.id,entryNodeId:e.entry_node_id,label:e.label,properties:g(e.properties),steps:t.map(e=>e.node_id),createdAt:e.created_at})}return n}async deleteProcess(e){await this.ensureOpen();let t=this.getAdapter();t.exec(`BEGIN TRANSACTION`);try{this.run(`DELETE FROM process_steps WHERE process_id = ?`,[e]),this.run(`DELETE FROM processes WHERE id = ?`,[e]),t.exec(`COMMIT`),t.flush()}catch(e){throw t.exec(`ROLLBACK`),e}}async depthGroupedTraversal(e,t=3,n){await this.ensureOpen();let r=n?.direction??`both`,i=n?.edgeType,a=n?.limit??100,o={},s=new Set;s.add(e);let c=[e];for(let e=1;e<=t;e++){let t=[],n=[];for(let e of c){let o=await this.getNeighbors(e,{direction:r,edgeType:i,limit:a});for(let e of o.nodes)s.has(e.id)||(s.add(e.id),t.push(e.id),n.push(e))}if(n.length>0&&(o[e]=n),c=t,c.length===0||s.size>=a)break}return o}async getCohesionScore(e){await this.ensureOpen();let t=this.query(`SELECT id FROM nodes WHERE community = ?`,[e]);if(t.length===0)return 0;let n=new Set(t.map(e=>e.id)),r=t.map(()=>`?`).join(`,`),i=t.map(e=>e.id),a=this.query(`SELECT from_id, to_id FROM edges WHERE from_id IN (${r}) OR to_id IN (${r})`,[...i,...i]);if(a.length===0)return 0;let o=0;for(let e of a)n.has(e.from_id)&&n.has(e.to_id)&&o++;return o/a.length}async getSymbol360(e){let t=await this.getNode(e);if(!t)throw Error(`Node '${e}' not found`);let n=await this.findEdges({toId:e}),r=await this.findEdges({fromId:e}),i=await this.getProcesses(e);return{node:t,incoming:n,outgoing:r,community:t.community??null,processes:i}}async close(){this.adapter&&=(this.adapter.close(),null)}};function g(e){if(!e)return{};try{return JSON.parse(e)}catch{return{}}}function _(e){return{id:e.id,type:e.type,name:e.name,properties:g(e.properties),sourceRecordId:e.source_record_id??void 0,sourcePath:e.source_path??void 0,createdAt:e.created_at,community:e.community??void 0}}function v(e){return{id:e.id,fromId:e.from_id,toId:e.to_id,type:e.type,weight:e.weight??1,confidence:e.confidence??1,properties:g(e.properties)}}function y(e){return{id:e.edge_id,fromId:e.from_id,toId:e.to_id,type:e.edge_type,weight:e.weight??1,confidence:e.edge_confidence??1,properties:g(e.edge_props??`{}`)}}function b(e){return{id:e.node_id,type:e.node_type,name:e.node_name,properties:g(e.node_props??`{}`),sourceRecordId:e.node_src_rec??void 0,sourcePath:e.node_src_path??void 0,createdAt:e.node_created,community:e.node_community??void 0}}async function x(e){switch(e.backend){case`lancedb`:{let{LanceStore:t}=await import(`./lance-store-CQkljFy3.js`).then(e=>e.n);return new t({path:e.path})}default:throw Error(`Unknown store backend: "${e.backend}". Supported: lancedb`)}}export{e as LanceStore,h as SqliteGraphStore,m as createSqliteAdapter,x as createStore};
+         WHERE ps.node_id = ?`,[e]):this.query(`SELECT * FROM processes`);let n=[];for(let e of t){let t=this.query(`SELECT node_id FROM process_steps WHERE process_id = ? ORDER BY step_order`,[e.id]);n.push({id:e.id,entryNodeId:e.entry_node_id,label:e.label,properties:u(e.properties),steps:t.map(e=>e.node_id),createdAt:e.created_at})}return n}async deleteProcess(e){await this.ensureOpen();let t=this.getAdapter();t.exec(`BEGIN TRANSACTION`);try{this.run(`DELETE FROM process_steps WHERE process_id = ?`,[e]),this.run(`DELETE FROM processes WHERE id = ?`,[e]),t.exec(`COMMIT`),t.flush()}catch(e){throw t.exec(`ROLLBACK`),e}}async depthGroupedTraversal(e,t=3,n){await this.ensureOpen();let r=n?.direction??`both`,i=n?.edgeType,a=n?.limit??100,o={},s=new Set;s.add(e);let c=[e];for(let e=1;e<=t;e++){let t=[],n=[];for(let e of c){let o=await this.getNeighbors(e,{direction:r,edgeType:i,limit:a});for(let e of o.nodes)s.has(e.id)||(s.add(e.id),t.push(e.id),n.push(e))}if(n.length>0&&(o[e]=n),c=t,c.length===0||s.size>=a)break}return o}async getCohesionScore(e){await this.ensureOpen();let t=this.query(`SELECT id FROM nodes WHERE community = ?`,[e]);if(t.length===0)return 0;let n=new Set(t.map(e=>e.id)),r=t.map(()=>`?`).join(`,`),i=t.map(e=>e.id),a=this.query(`SELECT from_id, to_id FROM edges WHERE from_id IN (${r}) OR to_id IN (${r})`,[...i,...i]);if(a.length===0)return 0;let o=0;for(let e of a)n.has(e.from_id)&&n.has(e.to_id)&&o++;return o/a.length}async getSymbol360(e){let t=await this.getNode(e);if(!t)throw Error(`Node '${e}' not found`);let n=await this.findEdges({toId:e}),r=await this.findEdges({fromId:e}),i=await this.getProcesses(e);return{node:t,incoming:n,outgoing:r,community:t.community??null,processes:i}}async close(){this.adapter&&=(this.externalAdapter||this.adapter.close(),null)}};function u(e){if(!e)return{};try{return JSON.parse(e)}catch{return{}}}function d(e){return{id:e.id,type:e.type,name:e.name,properties:u(e.properties),sourceRecordId:e.source_record_id??void 0,sourcePath:e.source_path??void 0,createdAt:e.created_at,community:e.community??void 0}}function f(e){return{id:e.id,fromId:e.from_id,toId:e.to_id,type:e.type,weight:e.weight??1,confidence:e.confidence??1,properties:u(e.properties)}}function p(e){return{id:e.edge_id,fromId:e.from_id,toId:e.to_id,type:e.edge_type,weight:e.weight??1,confidence:e.edge_confidence??1,properties:u(e.edge_props??`{}`)}}function m(e){return{id:e.node_id,type:e.node_type,name:e.node_name,properties:u(e.node_props??`{}`),sourceRecordId:e.node_src_rec??void 0,sourcePath:e.node_src_path??void 0,createdAt:e.node_created,community:e.node_community??void 0}}async function h(e){switch(e.backend){case`lancedb`:{let{LanceStore:t}=await import(`./lance-store-BRoi-4qY.js`).then(e=>e.n);return new t({path:e.path})}case`sqlite-vec`:{let{SqliteVecStore:t}=await import(`./sqlite-vec-store-CfcO7e_I.js`).then(e=>e.n);return new t({path:e.path,adapter:e.adapter,embeddingDim:e.embeddingDim})}default:{let t=e.backend;throw Error(`Unknown store backend: "${t}". Supported: lancedb, sqlite-vec`)}}}export{e as LanceStore,l as SqliteGraphStore,r as SqliteVecStore,n as createSqlJsAdapter,t as createSqliteAdapter,h as createStore};

package/packages/store/dist/lance-store-BRoi-4qY.js

@@ -0,0 +1 @@
+import{t as e}from"./rolldown-runtime-BynbHzcv.js";import{EMBEDDING_DEFAULTS as t,SEARCH_DEFAULTS as n,STORE_DEFAULTS as r,createLogger as i,serializeError as a,sourceTypeContentTypes as o}from"../../core/dist/index.js";import{Index as s,connect as c}from"@lancedb/lancedb";var l=e({LanceStore:()=>m});function u(e){if(!e)return[];try{let t=JSON.parse(e);return Array.isArray(t)?t:[]}catch{return[]}}const d=/^[\w.\-/ ]+$/,f=i(`store`);function p(e,t){if(!d.test(e))throw Error(`Invalid ${t} filter value: contains disallowed characters`);return e.replace(/'/g,`''`)}var m=class e{db=null;table=null;dbPath;tableName;_draining=!1;_priorityQueue=[];_normalQueue=[];_ftsReady=!1;_ftsRecoveryAttemptAt=0;static FTS_RECOVERY_COOLDOWN_MS=300*1e3;enqueueWrite(e,t=!1){return new Promise((n,r)=>{let i=async()=>{try{n(await e())}catch(e){r(e)}};t?this._priorityQueue.push(i):this._normalQueue.push(i),this._drain()})}async _drain(){if(!this._draining){this._draining=!0;try{for(;this._priorityQueue.length>0||this._normalQueue.length>0;){let e=this._priorityQueue.shift()??this._normalQueue.shift();e&&await e()}}finally{this._draining=!1}}}constructor(e){this.dbPath=e?.path??r.path,this.tableName=e?.tableName??r.tableName}async initialize(){this.db=await c(this.dbPath),(await this.db.tableNames()).includes(this.tableName)&&(this.table=await this.db.openTable(this.tableName),await this.createFtsIndex())}async upsert(e,t){if(e.length!==0){if(e.length!==t.length)throw Error(`Record count (${e.length}) does not match vector count (${t.length})`);return this.enqueueWrite(()=>this._upsertImpl(e,t))}}async upsertInteractive(e,t){if(e.length!==0){if(e.length!==t.length)throw Error(`Record count (${e.length}) does not match vector count (${t.length})`);return this.enqueueWrite(()=>this._upsertImpl(e,t),!0)}}async _upsertImpl(e,t){let n=e.map((e,n)=>({id:e.id,vector:Array.from(t[n]),content:e.content,sourcePath:e.sourcePath,contentType:e.contentType,headingPath:e.headingPath??``,chunkIndex:e.chunkIndex,totalChunks:e.totalChunks,startLine:e.startLine,endLine:e.endLine,fileHash:e.fileHash,indexedAt:e.indexedAt,origin:e.origin,tags:JSON.stringify(e.tags),category:e.category??``,version:e.version}));if(this.table){let t=[...new Set(e.map(e=>e.sourcePath))];for(let e of t)try{await this.table.delete(`sourcePath = '${p(e,`sourcePath`)}'`)}catch{}await this.table.add(n)}else try{this.table=await this.db?.createTable(this.tableName,n)??null}catch(e){if(String(e).includes(`already exists`)&&this.db)this.table=await this.db.openTable(this.tableName),await this.table.add(n);else throw e}}async search(e,t){if(!this.table)return[];let r=t?.limit??n.maxResults,i=t?.minScore??n.minScore,a=this.table.search(e).limit(r*2),o=this.buildFilterString(t);return o&&(a=a.where(o)),(await a.toArray()).map(e=>({record:this.fromLanceRecord(e),score:1-(e._distance??1)})).filter(e=>e.score>=i).slice(0,r)}async createFtsIndex(){return this.enqueueWrite(()=>this._createFtsIndexImpl())}async _createFtsIndexImpl(){if(this.table)try{await this.table.createIndex(`content`,{config:s.fts({withPosition:!0}),replace:!0}),this._ftsReady=!0,this._ftsRecoveryAttemptAt=0,f.info(`FTS index created/updated`,{column:`content`})}catch(e){f.warn(`FTS index creation failed`,a(e))}}async ftsSearch(t,r){if(!this.table)return[];if(!this._ftsReady){let t=Date.now();if(t-this._ftsRecoveryAttemptAt<e.FTS_RECOVERY_COOLDOWN_MS)return[];this._ftsRecoveryAttemptAt=t;try{await this.createFtsIndex()}catch{return[]}if(!this._ftsReady)return[]}let i=r?.limit??n.maxResults;try{let e=this.table.search(t).limit(i*2),n=this.buildFilterString(r);return n&&(e=e.where(n)),(await e.toArray()).map(e=>({record:this.fromLanceRecord(e),score:e._score??e._relevance_score??0}))}catch(e){return(e instanceof Error?e.message:String(e)).includes(`INVERTED index`)?(f.debug(`FTS search skipped — index not yet available`),this._ftsReady=!1):f.warn(`FTS search failed`,a(e)),[]}}async getById(e){if(!this.table)return null;let t=await this.table.query().where(`id = '${p(e,`id`)}'`).limit(1).toArray();return t.length===0?null:this.fromLanceRecord(t[0])}async deleteBySourcePath(e){return this.enqueueWrite(()=>this._deleteBySourcePathImpl(e))}async _deleteBySourcePathImpl(e){if(!this.table)return 0;let t=await this.getBySourcePath(e);return t.length===0?0:(await this.table.delete(`sourcePath = '${p(e,`sourcePath`)}'`),t.length)}async deleteById(e){return this.enqueueWrite(()=>this._deleteByIdImpl(e))}async deleteByIdInteractive(e){return this.enqueueWrite(()=>this._deleteByIdImpl(e),!0)}async _deleteByIdImpl(e){return!this.table||!await this.getById(e)?!1:(await this.table.delete(`id = '${p(e,`id`)}'`),!0)}async getBySourcePath(e){return this.table?(await this.table.query().where(`sourcePath = '${p(e,`sourcePath`)}'`).limit(1e3).toArray()).map(e=>this.fromLanceRecord(e)):[]}async getStats(){if(!this.table)return{totalRecords:0,totalFiles:0,contentTypeBreakdown:{},lastIndexedAt:null,storeBackend:`lancedb`,embeddingModel:t.model};let e=await this.table.countRows(),n=await this.table.query().select([`sourcePath`,`contentType`,`indexedAt`]).limit(1e5).toArray(),r={},i=new Set,a=null;for(let e of n){let t=e;r[t.contentType]=(r[t.contentType]??0)+1,i.add(t.sourcePath),(!a||t.indexedAt>a)&&(a=t.indexedAt)}return{totalRecords:e,totalFiles:i.size,contentTypeBreakdown:r,lastIndexedAt:a,storeBackend:`lancedb`,embeddingModel:t.model}}async listSourcePaths(){if(!this.table)return[];let e=await this.table.query().select([`sourcePath`]).limit(1e5).toArray();return[...new Set(e.map(e=>e.sourcePath))]}async dropTable(){return this.enqueueWrite(()=>this._dropTableImpl())}async _dropTableImpl(){if(this.db&&(await this.db.tableNames()).includes(this.tableName))for(let e=1;e<=3;e++)try{await this.db.dropTable(this.tableName);break}catch(t){if(e===3)throw t;let n=e*500;f.warn(`dropTable attempt failed, retrying`,{attempt:e,delayMs:n}),await new Promise(e=>setTimeout(e,n))}this.table=null}async close(){try{this.db&&typeof this.db.close==`function`&&await this.db.close()}catch{}this.table=null,this.db=null}buildFilterString(e){let t=[];if(e?.contentType&&t.push(`contentType = '${p(e.contentType,`contentType`)}'`),e?.sourceType){let n=o(e.sourceType);if(n.length>0){let e=n.map(e=>`'${p(e,`sourceType`)}'`).join(`, `);t.push(`contentType IN (${e})`)}}if(e?.origin&&t.push(`origin = '${p(e.origin,`origin`)}'`),e?.category&&t.push(`category = '${p(e.category,`category`)}'`),e?.tags&&e.tags.length>0){let n=e.tags.map(e=>`tags LIKE '%${p(e,`tag`)}%'`);t.push(`(${n.join(` OR `)})`)}return t.length>0?t.join(` AND `):null}fromLanceRecord(e){return{id:e.id,content:e.content,sourcePath:e.sourcePath,contentType:e.contentType,headingPath:e.headingPath||void 0,chunkIndex:e.chunkIndex,totalChunks:e.totalChunks,startLine:e.startLine,endLine:e.endLine,fileHash:e.fileHash,indexedAt:e.indexedAt,origin:e.origin,tags:u(e.tags),category:e.category||void 0,version:e.version}}};export{l as n,m as t};

package/packages/store/dist/rolldown-runtime-BynbHzcv.js

@@ -0,0 +1 @@
+import{createRequire as e}from"node:module";var t=Object.defineProperty,n=(e,n)=>{let r={};for(var i in e)t(r,i,{get:e[i],enumerable:!0});return n||t(r,Symbol.toStringTag,{value:`Module`}),r},r=e(import.meta.url);export{r as n,n as t};

package/packages/store/dist/sqlite-vec-store-CfcO7e_I.js

@@ -0,0 +1,68 @@
+import{n as e,t}from"./rolldown-runtime-BynbHzcv.js";import{createRequire as n}from"node:module";import{EMBEDDING_DEFAULTS as r,SEARCH_DEFAULTS as i,STORE_DEFAULTS as a,createLogger as o,serializeError as s,sourceTypeContentTypes as c}from"../../core/dist/index.js";import{existsSync as l,mkdirSync as u,readFileSync as d,renameSync as f,unlinkSync as p,writeFileSync as m}from"node:fs";import{dirname as h}from"node:path";const g=o(`sqlite-adapter`),_=n(import.meta.url);var v=class{type=`better-sqlite3`;vectorCapable=!1;db=null;stmtCache=new Map;async open(e){let t;try{t=_(`better-sqlite3`)}catch(e){throw Error(`better-sqlite3 native binding unavailable: ${e instanceof Error?e.message:String(e)}`)}this.db=new t(e),this.db.pragma(`journal_mode = WAL`),this.db.pragma(`foreign_keys = ON`),this.db.pragma(`synchronous = NORMAL`);try{_(`sqlite-vec`).load(this.db),this.vectorCapable=!0,g.info(`sqlite-vec extension loaded`)}catch(e){this.vectorCapable=!1,g.warn(`sqlite-vec extension failed to load; vector search disabled`,s(e))}}exec(e){this.getDb().exec(e)}pragma(e){this.getDb().pragma(e)}queryAll(e,t=[]){let n=this.prepareCached(e);return t.length>0?n.all(...t):n.all()}run(e,t=[]){let n=this.prepareCached(e);t.length>0?n.run(...t):n.run()}flush(){}close(){this.db&&=(this.stmtCache.clear(),this.db.close(),null)}getDb(){if(!this.db)throw Error(`BetterSqlite3Adapter: database not opened`);return this.db}prepareCached(e){let t=this.stmtCache.get(e);if(t)return t;let n=this.getDb().prepare(e);return this.stmtCache.set(e,n),n}};function y(e){return _.resolve(`sql.js/dist/${e}`)}var b=class{type=`sql.js`;vectorCapable=!1;db=null;dbPath=``;dirty=!1;inTransaction=!1;async open(e){this.dbPath=e;let t=(await import(`sql.js`)).default,n=await t({locateFile:e=>y(e)});if(l(e)){let t=d(e);this.db=new n.Database(t)}else this.db=new n.Database}exec(e){let t=e.trimStart().toUpperCase();this.getDb().run(e),t.startsWith(`BEGIN`)?this.inTransaction=!0:(t.startsWith(`COMMIT`)||t.startsWith(`ROLLBACK`))&&(this.inTransaction=!1),this.dirty=!0}pragma(e){this.getDb().exec(`PRAGMA ${e}`)}queryAll(e,t=[]){let n=this.getDb().prepare(e);try{t.length>0&&n.bind(t);let e=[];for(;n.step();)e.push(n.getAsObject());return e}finally{n.free()}}run(e,t=[]){let n=this.getDb(),r=e.trimStart().toUpperCase(),i=!this.inTransaction&&(r.startsWith(`INSERT`)||r.startsWith(`UPDATE`));i&&n.run(`SAVEPOINT fk_check`);try{if(t.length>0){let r=n.prepare(e);try{r.bind(t),r.step()}finally{r.free()}}else n.run(e);if(i){if(n.exec(`PRAGMA foreign_key_check`).length>0)throw n.run(`ROLLBACK TO fk_check`),n.run(`RELEASE fk_check`),Error(`FOREIGN KEY constraint failed`);n.run(`RELEASE fk_check`)}}catch(e){if(i)try{n.run(`ROLLBACK TO fk_check`),n.run(`RELEASE fk_check`)}catch{}throw e}this.dirty=!0}flush(){if(!this.dirty||!this.db)return;let e=this.db.export(),t=`${this.dbPath}.tmp`;m(t,Buffer.from(e)),f(t,this.dbPath),this.dirty=!1}close(){if(this.db){let e=this.db,t;try{this.flush()}catch(e){t=e;try{p(`${this.dbPath}.tmp`)}catch{}}try{e.close()}finally{this.db=null}if(t)throw t}}getDb(){if(!this.db)throw Error(`SqlJsAdapter: database not opened`);return this.db}};let x=!1;async function S(e){let t=new v;try{return await t.open(e),t}catch(e){x||(x=!0,g.warn(`[aikit] better-sqlite3 unavailable — falling back to sql.js (vector search disabled). Reinstall with prebuild support or rebuild from source to enable vector search.`,s(e)))}let n=new b;try{return await n.open(e),n}catch(e){let t=e instanceof Error?e.message:String(e);throw Error(`[aikit] SQLite adapter "sql.js" failed to load: ${t}`)}}async function C(e){let t=new b;return await t.open(e),t}var w=t({SqliteVecStore:()=>A});const T=/^[\w.\-/ ]+$/,E=o(`sqlite-vec-store`);function D(e){if(!e)return[];try{let t=JSON.parse(e);return Array.isArray(t)?t:[]}catch{return[]}}function O(e,t){if(!T.test(e))throw Error(`Invalid ${t} filter value: contains disallowed characters`);return e}function k(e){return Buffer.from(e.buffer,e.byteOffset,e.byteLength)}var A=class{adapter=null;externalAdapter;dbPath;embeddingDim;vectorEnabled=!1;warnedVectorDisabled=!1;_draining=!1;_priorityQueue=[];_normalQueue=[];constructor(e={}){this.embeddingDim=e.embeddingDim??r.dimensions,e.adapter?(this.adapter=e.adapter,this.externalAdapter=!0,this.dbPath=``):(this.dbPath=e.path??`${a.path}/aikit.db`,this.externalAdapter=!1)}async initialize(){if(!this.adapter){let e=h(this.dbPath);l(e)||u(e,{recursive:!0}),this.adapter=await S(this.dbPath)}this.vectorEnabled=this.adapter.vectorCapable,this.createKnowledgeTable(),this.createFtsTable(),this.vectorEnabled?this.ensureVecTable():this.warnedVectorDisabled||(this.warnedVectorDisabled=!0,E.warn(`SqliteVecStore: vector search disabled (sqlite-vec extension not loaded). Hybrid search will return FTS-only results.`))}getDiagnostics(){let t=this.adapter,n=t?t.constructor.name:`unknown`,r=null,i=this.externalAdapter?``:this.dbPath;if(i)try{let{statSync:t}=e(`node:fs`);r=t(i).size}catch{r=null}return{adapterType:n,vectorSearchEnabled:this.vectorEnabled,degradedMode:!this.vectorEnabled,dbPath:i,dbSizeBytes:r,embeddingDim:this.embeddingDim}}createKnowledgeTable(){let e=this.getAdapter();e.exec(`
+      CREATE TABLE IF NOT EXISTS knowledge (
+        id           TEXT PRIMARY KEY,
+        content      TEXT NOT NULL,
+        sourcePath   TEXT NOT NULL,
+        contentType  TEXT NOT NULL,
+        headingPath  TEXT NOT NULL DEFAULT '',
+        chunkIndex   INTEGER NOT NULL DEFAULT 0,
+        totalChunks  INTEGER NOT NULL DEFAULT 1,
+        startLine    INTEGER NOT NULL DEFAULT 0,
+        endLine      INTEGER NOT NULL DEFAULT 0,
+        fileHash     TEXT NOT NULL DEFAULT '',
+        indexedAt    TEXT NOT NULL,
+        origin       TEXT NOT NULL DEFAULT 'indexed',
+        tags         TEXT NOT NULL DEFAULT '[]',
+        category     TEXT NOT NULL DEFAULT '',
+        version      INTEGER NOT NULL DEFAULT 1
+      )
+    `),e.exec(`CREATE INDEX IF NOT EXISTS idx_knowledge_sourcePath ON knowledge(sourcePath)`),e.exec(`CREATE INDEX IF NOT EXISTS idx_knowledge_contentType ON knowledge(contentType)`),e.exec(`CREATE INDEX IF NOT EXISTS idx_knowledge_origin ON knowledge(origin)`)}createFtsTable(){this.getAdapter().exec(`
+      CREATE VIRTUAL TABLE IF NOT EXISTS knowledge_fts USING fts5(
+        id UNINDEXED,
+        content,
+        tokenize = 'unicode61 remove_diacritics 2'
+      )
+    `)}ensureVecTable(){let e=this.getAdapter(),t=e.queryAll(`SELECT name, sql FROM sqlite_master WHERE type='table' AND name='vec_knowledge'`);if(t.length>0){let n=(t[0].sql??``).match(/float\[(\d+)\]/i),r=n?Number(n[1]):null;r!==null&&r!==this.embeddingDim&&(E.warn(`Embedding dim changed — dropping vec table`,{existingDim:r,newDim:this.embeddingDim}),e.exec(`DROP TABLE vec_knowledge`))}e.exec(`
+      CREATE VIRTUAL TABLE IF NOT EXISTS vec_knowledge USING vec0(
+        embedding float[${this.embeddingDim}] distance_metric=cosine,
+        +knowledge_id TEXT
+      )
+    `)}enqueueWrite(e,t=!1){return new Promise((n,r)=>{let i=async()=>{try{n(await e())}catch(e){r(e)}};t?this._priorityQueue.push(i):this._normalQueue.push(i),this._drain()})}async _drain(){if(!this._draining){this._draining=!0;try{for(;this._priorityQueue.length>0||this._normalQueue.length>0;){let e=this._priorityQueue.shift()??this._normalQueue.shift();e&&await e()}}finally{this._draining=!1}}}async upsert(e,t){if(e.length!==0){if(e.length!==t.length)throw Error(`Record count (${e.length}) does not match vector count (${t.length})`);return this.enqueueWrite(()=>this._upsertImpl(e,t))}}async upsertInteractive(e,t){if(e.length!==0){if(e.length!==t.length)throw Error(`Record count (${e.length}) does not match vector count (${t.length})`);return this.enqueueWrite(()=>this._upsertImpl(e,t),!0)}}async _upsertImpl(e,t){let n=this.getAdapter();n.exec(`BEGIN`);try{for(let r=0;r<e.length;r++){let i=e[r];n.run(`INSERT INTO knowledge (id, content, sourcePath, contentType, headingPath, chunkIndex,
+              totalChunks, startLine, endLine, fileHash, indexedAt, origin, tags, category, version)
+           VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+           ON CONFLICT(id) DO UPDATE SET
+             content = excluded.content,
+             sourcePath = excluded.sourcePath,
+             contentType = excluded.contentType,
+             headingPath = excluded.headingPath,
+             chunkIndex = excluded.chunkIndex,
+             totalChunks = excluded.totalChunks,
+             startLine = excluded.startLine,
+             endLine = excluded.endLine,
+             fileHash = excluded.fileHash,
+             indexedAt = excluded.indexedAt,
+             origin = excluded.origin,
+             tags = excluded.tags,
+             category = excluded.category,
+             version = excluded.version`,[i.id,i.content,i.sourcePath,i.contentType,i.headingPath??``,i.chunkIndex,i.totalChunks,i.startLine,i.endLine,i.fileHash,i.indexedAt,i.origin,JSON.stringify(i.tags??[]),i.category??``,i.version]),n.run(`DELETE FROM knowledge_fts WHERE id = ?`,[i.id]),n.run(`INSERT INTO knowledge_fts (id, content) VALUES (?, ?)`,[i.id,i.content]),this.vectorEnabled&&(n.run(`DELETE FROM vec_knowledge WHERE knowledge_id = ?`,[i.id]),n.run(`INSERT INTO vec_knowledge (embedding, knowledge_id) VALUES (?, ?)`,[k(t[r]),i.id]))}n.exec(`COMMIT`)}catch(e){try{n.exec(`ROLLBACK`)}catch{}throw e}n.flush()}async search(e,t){if(!this.vectorEnabled)return this.warnedVectorDisabled||(this.warnedVectorDisabled=!0,E.warn(`search() called but vector backend is disabled — returning []`)),[];let n=this.getAdapter(),r=t?.limit??i.maxResults,a=t?.minScore??i.minScore,o=r*4,c=`
+      SELECT k.*, v.distance AS _distance
+      FROM (
+        SELECT knowledge_id, distance
+        FROM vec_knowledge
+        WHERE embedding MATCH ?
+        ORDER BY distance
+        LIMIT ?
+      ) v
+      JOIN knowledge k ON k.id = v.knowledge_id
+      ${this.buildFilterSqlSuffix(t)}
+      ORDER BY v.distance ASC
+      LIMIT ?
+    `,l;try{l=n.queryAll(c,[k(e),o,r])}catch(e){return E.warn(`vector search failed`,s(e)),[]}return l.map(e=>({record:this.fromRow(e),score:1-(e._distance??1)})).filter(e=>e.score>=a).slice(0,r)}async ftsSearch(e,t){if(!e||e.trim().length===0)return[];let n=this.getAdapter(),r=t?.limit??i.maxResults,a=`
+      SELECT k.*, bm25(knowledge_fts) AS _bm25
+      FROM knowledge_fts
+      JOIN knowledge k ON k.id = knowledge_fts.id
+      WHERE knowledge_fts MATCH ?
+      ${this.buildFilterSqlSuffix(t,!0)}
+      ORDER BY _bm25 ASC
+      LIMIT ?
+    `,o;try{let t=j(e);o=n.queryAll(a,[t,r])}catch(e){return E.warn(`fts search failed`,s(e)),[]}return o.map(e=>({record:this.fromRow(e),score:M(e._bm25)}))}async getById(e){let t=this.getAdapter().queryAll(`SELECT * FROM knowledge WHERE id = ? LIMIT 1`,[e]);return t.length===0?null:this.fromRow(t[0])}async deleteBySourcePath(e){return this.enqueueWrite(()=>this._deleteBySourcePathImpl(e))}async _deleteBySourcePathImpl(e){let t=this.getAdapter(),n=t.queryAll(`SELECT id FROM knowledge WHERE sourcePath = ?`,[e]);if(n.length===0)return 0;t.exec(`BEGIN`);try{for(let{id:e}of n)this.vectorEnabled&&t.run(`DELETE FROM vec_knowledge WHERE knowledge_id = ?`,[e]),t.run(`DELETE FROM knowledge_fts WHERE id = ?`,[e]);t.run(`DELETE FROM knowledge WHERE sourcePath = ?`,[e]),t.exec(`COMMIT`)}catch(e){try{t.exec(`ROLLBACK`)}catch{}throw e}return t.flush(),n.length}async deleteById(e){return this.enqueueWrite(()=>this._deleteByIdImpl(e))}async deleteByIdInteractive(e){return this.enqueueWrite(()=>this._deleteByIdImpl(e),!0)}async _deleteByIdImpl(e){let t=this.getAdapter();if(t.queryAll(`SELECT id FROM knowledge WHERE id = ? LIMIT 1`,[e]).length===0)return!1;t.exec(`BEGIN`);try{this.vectorEnabled&&t.run(`DELETE FROM vec_knowledge WHERE knowledge_id = ?`,[e]),t.run(`DELETE FROM knowledge_fts WHERE id = ?`,[e]),t.run(`DELETE FROM knowledge WHERE id = ?`,[e]),t.exec(`COMMIT`)}catch(e){try{t.exec(`ROLLBACK`)}catch{}throw e}return t.flush(),!0}async getBySourcePath(e){return this.getAdapter().queryAll(`SELECT * FROM knowledge WHERE sourcePath = ? ORDER BY chunkIndex ASC`,[e]).map(e=>this.fromRow(e))}async getStats(){let e=this.getAdapter(),t=e.queryAll(`SELECT COUNT(*) AS n FROM knowledge`)[0]?.n??0;if(t===0)return{totalRecords:0,totalFiles:0,contentTypeBreakdown:{},lastIndexedAt:null,storeBackend:`sqlite-vec`,embeddingModel:r.model};let n=e.queryAll(`SELECT COUNT(DISTINCT sourcePath) AS n FROM knowledge`),i=e.queryAll(`SELECT contentType, COUNT(*) AS n FROM knowledge GROUP BY contentType`),a=e.queryAll(`SELECT MAX(indexedAt) AS ts FROM knowledge`),o={};for(let e of i)o[e.contentType]=e.n;return{totalRecords:t,totalFiles:n[0]?.n??0,contentTypeBreakdown:o,lastIndexedAt:a[0]?.ts??null,storeBackend:`sqlite-vec`,embeddingModel:r.model}}async listSourcePaths(){return this.getAdapter().queryAll(`SELECT DISTINCT sourcePath FROM knowledge ORDER BY sourcePath`).map(e=>e.sourcePath)}async createFtsIndex(){this.createFtsTable()}async dropTable(){return this.enqueueWrite(()=>this._dropTableImpl())}async _dropTableImpl(){let e=this.getAdapter();e.exec(`DROP TABLE IF EXISTS knowledge_fts`),this.vectorEnabled&&e.exec(`DROP TABLE IF EXISTS vec_knowledge`),e.exec(`DROP TABLE IF EXISTS knowledge`),e.flush(),this.createKnowledgeTable(),this.createFtsTable(),this.vectorEnabled&&this.ensureVecTable()}async close(){for(;this._priorityQueue.length>0||this._normalQueue.length>0||this._draining;)await new Promise(e=>setTimeout(e,5));this.adapter&&!this.externalAdapter&&this.adapter.close(),this.adapter=null}getAdapter(){if(!this.adapter)throw Error(`SqliteVecStore: not initialized — call initialize() first`);return this.adapter}buildFilterSqlSuffix(e,t=!1){if(!e)return``;let n=[];if(e.contentType&&n.push(`k.contentType = '${O(e.contentType,`contentType`)}'`),e.sourceType){let t=c(e.sourceType);if(t.length>0){let e=t.map(e=>`'${O(e,`sourceType`)}'`).join(`, `);n.push(`k.contentType IN (${e})`)}}if(e.origin&&n.push(`k.origin = '${O(e.origin,`origin`)}'`),e.category&&n.push(`k.category = '${O(e.category,`category`)}'`),e.tags&&e.tags.length>0){let t=e.tags.map(e=>`k.tags LIKE '%' || '${O(e,`tag`)}' || '%'`);n.push(`(${t.join(` OR `)})`)}if(n.length===0)return``;let r=n.join(` AND `);return t?`AND ${r}`:`WHERE ${r}`}fromRow(e){return{id:e.id,content:e.content,sourcePath:e.sourcePath,contentType:e.contentType,headingPath:e.headingPath||void 0,chunkIndex:e.chunkIndex,totalChunks:e.totalChunks,startLine:e.startLine,endLine:e.endLine,fileHash:e.fileHash,indexedAt:e.indexedAt,origin:e.origin,tags:D(e.tags),category:e.category||void 0,version:e.version}}};function j(e){let t=e.replace(/["'()*:^-]/g,` `).trim();return t?t.split(/\s+/).filter(e=>e.length>0).map(e=>`"${e}"`).join(` OR `):`""`}function M(e){return e==null||Number.isNaN(e)?0:1-Math.exp(-Math.abs(e)/5)}export{S as i,w as n,C as r,A as t};

package/scaffold/README.md

@@ -205,6 +205,7 @@ they added. Protocol files (`_shared/*.md`) are fully replaced.
 
 | Mistake | Why it's wrong | What to do instead |
 |---------|---------------|-------------------|
+| Editing deployed files directly (e.g. `~/.copilot/skills/`, `~/.github/agents/`) | These are **deploy targets**, not source. Changes will be overwritten on next `aikit init` or `generate.mjs` run | Always edit in `scaffold/definitions/` -> run `generate.mjs` -> then `aikit init` to deploy |
 | Editing `.agent.md` in `general/agents/` | Will be overwritten by `generate.mjs` | Edit `bodies.mjs` for agent bodies |
 | Editing `_shared/*.md` in `general/agents/` | Will be overwritten by `generate.mjs` | Edit `protocols.mjs` PROTOCOLS constant |
 | Editing flow step content in `_preview/flows/` | Will be overwritten by `generate.mjs` | Edit `definitions/flows.mjs` |

package/scaffold/dist/definitions/protocols.mjs

@@ -894,16 +894,7 @@ The Orchestrator uses **multi-model decision analysis** to resolve non-trivial t
 
 ### Phase 1 — Independent Research (parallel)
 
-Launch ALL available Researcher variants **in parallel**
-with the same
-question.Each;
-returns;
-an;
-independent;
-recommendation;
-grounded in their;
-thinking;
-style:
+Dispatch ALL available Researcher variants **in parallel** via \`runSubagent\` — one call per variant, same question, simultaneous. Each returns an independent recommendation grounded in their thinking style:
 
 | Variant | Thinking Style | Lens |
 |---------|---------------|------|
@@ -914,18 +905,7 @@ style:
 
 ### Phase 2 — Peer Review (parallel)
 
-After all researchers
-return, **anonymize** their
-responses as Perspective
-A / B / C / D (strip agent names). Then
-launch;
-a ** second;
-parallel;
-batch ** of;
-4;
-review;
-sub - agents;
-:
+After all researchers return, **anonymize** their responses as Perspective A / B / C / D (strip agent names). Then dispatch a **second parallel batch** of 4 review sub-agents via \`runSubagent\`:
 
 **Peer Review Prompt Template:**
 \`\`\`
@@ -990,6 +970,7 @@ Trigger the decision protocol when there is an **unresolved non-trivial technica
 
 ## Key Rules
 
+- **\`runSubagent\` is ALWAYS available** — it is a core tool in every environment (VS Code, CLI, Copilot Chat). NEVER claim it is unavailable. NEVER simulate researchers inline by "applying lenses yourself." If you cannot call \`runSubagent\`, you have a tool-loading issue — retry or escalate, do NOT degrade to single-agent inline simulation.
 - Always launch in **parallel**, minimum 4 variants
 - Use exact case-sensitive agent names — never rename or alias
 - **Anonymize** researcher outputs before peer review (A/B/C/D, not agent names)