@vivantel/virage-core 0.2.3 → 0.2.4

package/dist/cli/init.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/cli/init.ts"],"names":[],"mappings":"AAyMA,wBAAsB,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC,CAwN7C"}
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/cli/init.ts"],"names":[],"mappings":"AAiPA,wBAAsB,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC,CAmP7C"}

package/dist/cli/init.js

@@ -1,6 +1,6 @@
 import { checkbox, input, select } from "@inquirer/prompts";
 import { existsSync } from "fs";
-import { readFile, writeFile } from "fs/promises";
+import { readFile, rename, writeFile } from "fs/promises";
 import { join } from "path";
 import { spawn } from "child_process";
 import { loadRegistry } from "../plugin-registry.js";
@@ -49,6 +49,43 @@ function buildInstallCommand(pm, packages) {
             return { cmd: "npm", args: ["install", ...packages] };
     }
 }
+function buildGlobalInstallCommand(pm, packages) {
+    switch (pm) {
+        case "yarn":
+            return { cmd: "yarn", args: ["global", "add", ...packages] };
+        case "pnpm":
+            return { cmd: "pnpm", args: ["add", "-g", ...packages] };
+        case "bun":
+            return { cmd: "bun", args: ["add", "-g", ...packages] };
+        default:
+            return { cmd: "npm", args: ["install", "-g", ...packages] };
+    }
+}
+async function rotateConfigBackups(configPath) {
+    const bak = (n) => `${configPath}.bak.${n}`;
+    // Delete oldest backup if present
+    try {
+        await rename(bak(5), bak(5) + ".del");
+        const { unlink } = await import("fs/promises");
+        await unlink(bak(5) + ".del");
+    }
+    catch {
+        // No .bak.5 to remove
+    }
+    // Shift .bak.4 → .bak.5, .bak.3 → .bak.4, ... .bak.1 → .bak.2
+    for (let i = 4; i >= 1; i--) {
+        try {
+            await rename(bak(i), bak(i + 1));
+        }
+        catch {
+            // No backup at this slot
+        }
+    }
+    // Rename current file to .bak.1
+    if (existsSync(configPath)) {
+        await rename(configPath, bak(1));
+    }
+}
 function runInstall(cmd, args) {
     return new Promise((resolve, reject) => {
         const proc = spawn(cmd, args, {
@@ -136,6 +173,20 @@ async function writeEnvVars(envPath, vars) {
 // ─── Main wizard ──────────────────────────────────────────────────────────────
 export async function runInit() {
     console.log("\nVirage Config Generator\n");
+    const defaultConfigPath = "./virage.config.json";
+    if (existsSync(defaultConfigPath)) {
+        const overwrite = await select({
+            message: `Config file ${defaultConfigPath} already exists. Overwrite?`,
+            choices: [
+                { name: "Yes (backup & overwrite)", value: true },
+                { name: "No, cancel", value: false },
+            ],
+        });
+        if (!overwrite) {
+            console.log("\nCancelled.");
+            return;
+        }
+    }
     const cwd = process.cwd();
     console.log("Scanning project for file types...");
     const detectedGroups = await detectFileExtensions(cwd);
@@ -231,13 +282,14 @@ export async function runInit() {
         }
     }
     const finalState = state;
-    // ── Overwrite check ──
-    if (existsSync(finalState.outputPath)) {
+    // ── Overwrite safety net for custom output path ──
+    if (finalState.outputPath !== defaultConfigPath &&
+        existsSync(finalState.outputPath)) {
         const overwrite = await select({
             message: `${finalState.outputPath} already exists. What would you like to do?`,
             choices: [
+                { name: "Yes (backup & overwrite)", value: true },
                 { name: "No, cancel (keep existing file)", value: false },
-                { name: "Yes, overwrite it", value: true },
             ],
         });
         if (!overwrite) {
@@ -246,6 +298,7 @@ export async function runInit() {
         }
     }
     // ── Write config ──
+    await rotateConfigBackups(finalState.outputPath);
     const configContent = generateJsonConfig(finalState, registry);
     await writeFile(finalState.outputPath, configContent, "utf-8");
     console.log(`\nCreated ${finalState.outputPath}`);
@@ -289,15 +342,21 @@ export async function runInit() {
     const pkgs = getRequiredPackages(finalState, registry);
     if (pkgs.length > 0) {
         const pm = await detectPackageManager(cwd);
-        const { cmd, args } = buildInstallCommand(pm, pkgs);
-        const shouldInstall = await select({
+        const localCmd = buildInstallCommand(pm, pkgs);
+        const globalCmd = buildGlobalInstallCommand(pm, pkgs);
+        const installChoice = await select({
             message: `Install ${pkgs.join(", ")} using ${pm}?`,
             choices: [
-                { name: "Yes, install now (recommended)", value: true },
-                { name: "No, I'll install manually", value: false },
+                {
+                    name: "Yes, install in current folder (recommended)",
+                    value: "local",
+                },
+                { name: "Yes, install globally", value: "global" },
+                { name: "No, I'll install manually", value: "manual" },
             ],
         });
-        if (shouldInstall) {
+        if (installChoice === "local" || installChoice === "global") {
+            const { cmd, args } = installChoice === "global" ? globalCmd : localCmd;
             try {
                 await runInstall(cmd, args);
                 console.log("\nPackages installed successfully.");
@@ -307,7 +366,7 @@ export async function runInit() {
             }
         }
         else {
-            console.log(`\nRun manually:\n  ${cmd} ${args.join(" ")}`);
+            console.log(`\nRun manually:\n  ${localCmd.cmd} ${localCmd.args.join(" ")}`);
         }
     }
     // ── Next steps ──

package/dist/cli/init.js.map

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package/dist/core/embedder.d.ts

@@ -1,6 +1,7 @@
 import { EmbeddingProvider, EmbeddedChunk, EmbeddingsMeta, Chunk } from "../interfaces/index.js";
 import type { Logger } from "../interfaces/logger.js";
 import { RetryOptions } from "./utils.js";
+import { EmbeddingsDb } from "./embeddings-db.js";
 export declare class EmbedderProcessor {
     private provider;
     private rateLimitMs;
@@ -10,6 +11,7 @@ export declare class EmbedderProcessor {
     private concurrency;
     private vectorStoreName?;
     private saveIntervalMs;
+    private minIngestionBatchSize;
     private logger;
     onProgress?: (completed: number, total: number) => void;
     constructor(provider: EmbeddingProvider, options?: {
@@ -20,17 +22,18 @@ export declare class EmbedderProcessor {
         concurrency?: number;
         vectorStoreName?: string;
         saveIntervalMs?: number;
+        minIngestionBatchSize?: number;
         logger?: Logger;
         onProgress?: (completed: number, total: number) => void;
     });
     embedChunk(chunk: Chunk): Promise<EmbeddedChunk>;
     embedBatch(chunks: Chunk[]): Promise<EmbeddedChunk[]>;
-    getChunksToEmbed(chunksFile: string, force?: boolean): Promise<{
+    getChunksToEmbed(db: EmbeddingsDb, chunks: Chunk[], force?: boolean): Promise<{
         chunksToEmbed: Chunk[];
-        existingMeta: EmbeddingsMeta | null;
+        meta: EmbeddingsMeta | null;
         isNewEmbeddingSpace: boolean;
     }>;
-    saveEmbeddings(newEmbeddings: EmbeddedChunk[], chunksFile: string, existingMeta: EmbeddingsMeta | null, isFirstBatch: boolean, forceFirstBatch: boolean): Promise<void>;
-    run(chunksFile: string, force?: boolean): Promise<EmbeddedChunk[]>;
+    saveEmbeddings(db: EmbeddingsDb, newEmbeddings: EmbeddedChunk[], meta: EmbeddingsMeta): Promise<void>;
+    run(db: EmbeddingsDb, chunksFile: string, force?: boolean, onIntermediateBatch?: () => Promise<void>): Promise<EmbeddedChunk[]>;
 }
 //# sourceMappingURL=embedder.d.ts.map

package/dist/core/embedder.d.ts.map

@@ -1 +1 @@
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package/dist/core/embedder.js

@@ -3,7 +3,6 @@ import { readFile } from "fs/promises";
 import { createHash } from "crypto";
 import { EmbedError } from "./errors.js";
 import { sleep, withRetry, withConcurrency, batchBySize, defaultIsRetryable, } from "./utils.js";
-import { readEmbeddingsFile, writeEmbeddingsFile } from "./embeddings-io.js";
 function chunkContentHash(chunk) {
     if (chunk.contentHash)
         return chunk.contentHash;
@@ -18,6 +17,7 @@ export class EmbedderProcessor {
     concurrency;
     vectorStoreName;
     saveIntervalMs;
+    minIngestionBatchSize;
     logger;
     onProgress;
     constructor(provider, options = {}) {
@@ -29,6 +29,7 @@ export class EmbedderProcessor {
         this.concurrency = options.concurrency ?? 1;
         this.vectorStoreName = options.vectorStoreName;
         this.saveIntervalMs = options.saveIntervalMs ?? 30_000;
+        this.minIngestionBatchSize = options.minIngestionBatchSize ?? Infinity;
         this.onProgress = options.onProgress;
         this.logger = (options.logger ?? new NullLogger()).withTag("embedder");
     }
@@ -73,63 +74,36 @@ export class EmbedderProcessor {
         });
         return withConcurrency(tasks, this.concurrency);
     }
-    async getChunksToEmbed(chunksFile, force = false) {
-        let chunks;
-        try {
-            const content = await readFile(chunksFile, "utf-8");
-            const parsed = JSON.parse(content);
-            if (!Array.isArray(parsed)) {
-                throw new Error("chunks file does not contain a JSON array");
-            }
-            chunks = parsed;
-        }
-        catch (err) {
-            throw new EmbedError(`Failed to load chunks from ${chunksFile}: ${err instanceof Error ? err.message : String(err)}`, {
-                suggestion: "Run the pipeline without --skip-upload to regenerate chunks first.",
-                cause: err,
-            });
-        }
-        this.logger.info(`📖 Loaded ${chunks.length} chunks from ${chunksFile}`);
+    async getChunksToEmbed(db, chunks, force = false) {
+        this.logger.info(`📖 Loaded ${chunks.length} chunks`);
         this.logger.debug(`Provider: ${this.provider.name}, model: ${this.provider.model ?? "(none)"}, dims: ${this.provider.dimensions}`);
+        const existingMeta = db.getMeta();
         if (force) {
-            this.logger.verbose("Force mode: embedding all chunks");
-            return {
-                chunksToEmbed: chunks,
-                existingMeta: null,
-                isNewEmbeddingSpace: true,
-            };
+            this.logger.verbose("Force mode: clearing db and embedding all chunks");
+            db.clearAll();
+            return { chunksToEmbed: chunks, meta: null, isNewEmbeddingSpace: true };
         }
-        const embeddingsFile = chunksFile.replace("chunks", "embeddings");
-        const { meta, chunks: existingEmbeddings } = await readEmbeddingsFile(embeddingsFile);
-        // Check if the embedding model or dimensions changed — if so, all cached embeddings
-        // are invalid for the new model's vector space.
-        // Discriminators: model + dimensions. providerName is informational only (the same
-        // model served via OpenAI, Azure, or GitHub Models produces identical vectors).
-        const isNewEmbeddingSpace = false;
-        if (meta && existingEmbeddings.length > 0) {
-            const modelChanged = meta.model !== undefined &&
+        // Check if the embedding model or dimensions changed
+        if (existingMeta) {
+            const modelChanged = existingMeta.model !== undefined &&
                 this.provider.model !== undefined &&
-                meta.model !== this.provider.model;
-            const dimensionsChanged = meta.providerDimensions !== this.provider.dimensions;
+                existingMeta.model !== this.provider.model;
+            const dimensionsChanged = existingMeta.providerDimensions !== this.provider.dimensions;
             if (modelChanged || dimensionsChanged) {
-                const prevModel = meta.model ?? "(unknown)";
+                const prevModel = existingMeta.model ?? "(unknown)";
                 const curModel = this.provider.model ?? "(unknown)";
-                const prevDims = meta.providerDimensions;
+                const prevDims = existingMeta.providerDimensions;
                 const curDims = this.provider.dimensions;
                 this.logger.warn(`⚠️ Embedding model changed!`);
                 this.logger.warn(`   Previous: ${prevModel} (${prevDims}d)`);
                 this.logger.warn(`   Current:  ${curModel} (${curDims}d)`);
                 this.logger.warn(`   Discarding existing embeddings — all chunks will be re-embedded.`);
-                return {
-                    chunksToEmbed: chunks,
-                    existingMeta: null,
-                    isNewEmbeddingSpace: true,
-                };
+                db.clearAll();
+                return { chunksToEmbed: chunks, meta: null, isNewEmbeddingSpace: true };
             }
         }
-        // Two-level index:
-        //   (sourceFile::commitHash) → Set<contentHash>  — for file-level fast path
-        //   contentHash (global)                          — for per-chunk fallback
+        // Two-level index: (sourceFile::commitHash) → Set<contentHash> and global contentHash set
+        const existingEmbeddings = db.getAll();
         const embeddedFileVersions = new Map();
         const embeddedByContentHash = new Set();
         for (const emb of existingEmbeddings) {
@@ -146,7 +120,6 @@ export class EmbedderProcessor {
         }
         this.logger.verbose(`📊 Existing: ${existingEmbeddings.length} chunks across ${embeddedFileVersions.size} version(s)`);
         this.logger.debug(`Vector store: ${this.vectorStoreName ?? "(none)"}`);
-        // Group incoming chunks by (sourceFile, commitHash)
         const chunksByFileVersion = new Map();
         for (const chunk of chunks) {
             const key = `${chunk.sourceFile}::${chunk.commitHash}`;
@@ -163,7 +136,6 @@ export class EmbedderProcessor {
         let skippedChunks = 0;
         for (const [key, fileChunks] of chunksByFileVersion) {
             const fileVersionHashes = embeddedFileVersions.get(key);
-            // Fast path: every chunk for this (sourceFile, commitHash) is already embedded
             if (fileVersionHashes &&
                 fileVersionHashes.size === fileChunks.length &&
                 fileChunks.every((c) => fileVersionHashes.has(chunkContentHash(c)))) {
@@ -171,8 +143,6 @@ export class EmbedderProcessor {
                 skippedChunks += fileChunks.length;
                 continue;
             }
-            // Per-chunk fallback: check globally by contentHash (handles partial embeddings
-            // from interrupted runs, or content-identical chunks at a different commit)
             for (const chunk of fileChunks) {
                 if (!embeddedByContentHash.has(chunkContentHash(chunk))) {
                     chunksToEmbed.push(chunk);
@@ -182,59 +152,37 @@ export class EmbedderProcessor {
         if (skippedFiles > 0) {
             this.logger.verbose(`⏭️ Skipped ${skippedFiles} unchanged version(s) (${skippedChunks} chunks)`);
         }
-        return { chunksToEmbed, existingMeta: meta, isNewEmbeddingSpace };
+        return { chunksToEmbed, meta: existingMeta, isNewEmbeddingSpace: false };
     }
-    async saveEmbeddings(newEmbeddings, chunksFile, existingMeta, isFirstBatch, forceFirstBatch) {
-        const embeddingsFile = chunksFile.replace("chunks", "embeddings");
-        const now = Math.floor(Date.now() / 1000);
-        const newByHash = new Map();
-        for (const emb of newEmbeddings) {
-            const hash = emb.contentHash || chunkContentHash(emb);
-            newByHash.set(hash, emb);
+    async saveEmbeddings(db, newEmbeddings, meta) {
+        db.setMeta(meta);
+        db.insert(newEmbeddings);
+        this.logger.verbose(`Saved ${newEmbeddings.length} new embeddings to db`);
+    }
+    async run(db, chunksFile, force = false, onIntermediateBatch) {
+        this.logger.info("🔢 Starting incremental embedding generation...");
+        let chunks;
+        try {
+            const content = await readFile(chunksFile, "utf-8");
+            const parsed = JSON.parse(content);
+            if (!Array.isArray(parsed)) {
+                throw new Error("chunks file does not contain a JSON array");
+            }
+            chunks = parsed;
         }
-        // When force-clearing (force flag or model mismatch detected), discard existing chunks
-        // on the first batch; subsequent batches always merge incrementally.
-        const discardExisting = isFirstBatch && forceFirstBatch;
-        let keepChunks = [];
-        let createdAt = now;
-        if (!discardExisting) {
-            const { meta, chunks: existing } = await readEmbeddingsFile(embeddingsFile);
-            if (meta)
-                createdAt = meta.createdAt;
-            keepChunks = existing.filter((e) => {
-                const hash = e.contentHash || chunkContentHash(e);
-                return !newByHash.has(hash);
+        catch (err) {
+            throw new EmbedError(`Failed to load chunks from ${chunksFile}: ${err instanceof Error ? err.message : String(err)}`, {
+                suggestion: "Run the pipeline without --skip-upload to regenerate chunks first.",
+                cause: err,
             });
         }
-        const final = [...keepChunks, ...newEmbeddings];
-        const meta = {
-            schemaVersion: 1,
-            providerName: this.provider.name,
-            providerDimensions: this.provider.dimensions,
-            ...(this.provider.model !== undefined
-                ? { model: this.provider.model }
-                : {}),
-            ...(this.vectorStoreName !== undefined
-                ? { vectorStoreName: this.vectorStoreName }
-                : {}),
-            // Preserve createdAt from the existing meta when available and not overwriting
-            createdAt: existingMeta && !discardExisting ? existingMeta.createdAt : createdAt,
-            updatedAt: now,
-        };
-        await writeEmbeddingsFile(embeddingsFile, meta, final);
-        this.logger.verbose(`Saved ${final.length} embeddings to ${embeddingsFile}`);
-        this.logger.verbose(`   New: ${newEmbeddings.length}, Existing: ${keepChunks.length}`);
-    }
-    async run(chunksFile, force = false) {
-        this.logger.info("🔢 Starting incremental embedding generation...");
-        const { chunksToEmbed, existingMeta, isNewEmbeddingSpace } = await this.getChunksToEmbed(chunksFile, force);
-        // Treat a model-space change the same as --force for the save step
-        const effectiveForce = force || isNewEmbeddingSpace;
+        const { chunksToEmbed, meta: existingMeta } = await this.getChunksToEmbed(db, chunks, force);
         if (chunksToEmbed.length === 0) {
             this.logger.info("✨ No chunks need embedding.");
             return [];
         }
         this.logger.info(`📝 Need to embed ${chunksToEmbed.length} chunks`);
+        const now = Math.floor(Date.now() / 1000);
         const batches = batchBySize(chunksToEmbed, this.batchSize, (c) => c.content.length, this.maxBatchChars);
         const newEmbeddings = [];
         let lastSaveTime = Date.now();
@@ -247,8 +195,25 @@ export class EmbedderProcessor {
             const isLastBatch = i === batches.length - 1;
             const elapsed = Date.now() - lastSaveTime;
             if (isLastBatch || elapsed >= this.saveIntervalMs) {
-                await this.saveEmbeddings(embedded, chunksFile, existingMeta, i === 0, i === 0 && effectiveForce);
+                const meta = {
+                    schemaVersion: 1,
+                    providerName: this.provider.name,
+                    providerDimensions: this.provider.dimensions,
+                    ...(this.provider.model !== undefined
+                        ? { model: this.provider.model }
+                        : {}),
+                    ...(this.vectorStoreName !== undefined
+                        ? { vectorStoreName: this.vectorStoreName }
+                        : {}),
+                    createdAt: existingMeta?.createdAt ?? now,
+                    updatedAt: now,
+                };
+                await this.saveEmbeddings(db, embedded, meta);
                 lastSaveTime = Date.now();
+                if (onIntermediateBatch &&
+                    db.pendingCount() >= this.minIngestionBatchSize) {
+                    await onIntermediateBatch();
+                }
             }
         }
         return newEmbeddings;

package/dist/core/embedder.js.map

@@ -1 +1 @@
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package/dist/core/embeddings-db.d.ts

@@ -0,0 +1,20 @@
+import type { EmbeddedChunk, EmbeddingsMeta } from "../interfaces/index.js";
+export declare class EmbeddingsDb {
+    private db;
+    constructor(dbPath: string);
+    private isEmpty;
+    getMeta(): EmbeddingsMeta | null;
+    setMeta(meta: EmbeddingsMeta): void;
+    insert(chunks: EmbeddedChunk[]): void;
+    has(contentHash: string): boolean;
+    getAll(): EmbeddedChunk[];
+    getPending(): EmbeddedChunk[];
+    markUploaded(contentHashes: string[]): void;
+    pendingCount(): number;
+    clearAll(): void;
+    pruneUploaded(): void;
+    migrateFromJson(jsonPath: string): void;
+    close(): void;
+    private rows;
+}
+//# sourceMappingURL=embeddings-db.d.ts.map

package/dist/core/embeddings-db.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"embeddings-db.d.ts","sourceRoot":"","sources":["../../src/core/embeddings-db.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,aAAa,EAAE,cAAc,EAAE,MAAM,wBAAwB,CAAC;AA2B5E,qBAAa,YAAY;IACvB,OAAO,CAAC,EAAE,CAAoB;gBAElB,MAAM,EAAE,MAAM;IAW1B,OAAO,CAAC,OAAO;IAOf,OAAO,IAAI,cAAc,GAAG,IAAI;IAYhC,OAAO,CAAC,IAAI,EAAE,cAAc,GAAG,IAAI;IAMnC,MAAM,CAAC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAI;IAsBrC,GAAG,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO;IAOjC,MAAM,IAAI,aAAa,EAAE;IAIzB,UAAU,IAAI,aAAa,EAAE;IAI7B,YAAY,CAAC,aAAa,EAAE,MAAM,EAAE,GAAG,IAAI;IAU3C,YAAY,IAAI,MAAM;IAOtB,QAAQ,IAAI,IAAI;IAKhB,aAAa,IAAI,IAAI;IAIrB,eAAe,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI;IAyDvC,KAAK,IAAI,IAAI;IAIb,OAAO,CAAC,IAAI;CAkCb"}

package/dist/core/embeddings-db.js

@@ -0,0 +1,181 @@
+import { createHash } from "crypto";
+import { existsSync, readFileSync } from "fs";
+import { rename } from "fs/promises";
+import Database from "better-sqlite3";
+function chunkContentHash(chunk) {
+    return (chunk.contentHash ??
+        createHash("sha256").update(chunk.content).digest("hex").slice(0, 16));
+}
+const SCHEMA = `
+CREATE TABLE IF NOT EXISTS meta (
+  key TEXT PRIMARY KEY,
+  value TEXT NOT NULL
+);
+CREATE TABLE IF NOT EXISTS embeddings (
+  content_hash TEXT PRIMARY KEY,
+  source_file TEXT NOT NULL,
+  commit_hash TEXT NOT NULL,
+  content TEXT NOT NULL,
+  metadata_json TEXT NOT NULL,
+  embedding_json TEXT NOT NULL,
+  embedded_at INTEGER NOT NULL,
+  uploaded INTEGER NOT NULL DEFAULT 0
+);
+CREATE INDEX IF NOT EXISTS idx_source_file ON embeddings(source_file);
+`;
+export class EmbeddingsDb {
+    db;
+    constructor(dbPath) {
+        this.db = new Database(dbPath);
+        this.db.pragma("journal_mode = WAL");
+        this.db.exec(SCHEMA);
+        const jsonPath = dbPath.replace(/\.db$/, ".json");
+        if (this.isEmpty() && existsSync(jsonPath)) {
+            this.migrateFromJson(jsonPath);
+        }
+    }
+    isEmpty() {
+        const row = this.db
+            .prepare("SELECT COUNT(*) as cnt FROM embeddings")
+            .get();
+        return row.cnt === 0;
+    }
+    getMeta() {
+        const row = this.db
+            .prepare("SELECT value FROM meta WHERE key = 'meta'")
+            .get();
+        if (!row)
+            return null;
+        try {
+            return JSON.parse(row.value);
+        }
+        catch {
+            return null;
+        }
+    }
+    setMeta(meta) {
+        this.db
+            .prepare("INSERT OR REPLACE INTO meta (key, value) VALUES ('meta', ?)")
+            .run(JSON.stringify(meta));
+    }
+    insert(chunks) {
+        const stmt = this.db.prepare(`
+      INSERT OR IGNORE INTO embeddings
+        (content_hash, source_file, commit_hash, content, metadata_json, embedding_json, embedded_at, uploaded)
+      VALUES (?, ?, ?, ?, ?, ?, ?, 0)
+    `);
+        const insertMany = this.db.transaction((items) => {
+            for (const chunk of items) {
+                stmt.run(chunkContentHash(chunk), chunk.sourceFile, chunk.commitHash, chunk.content, JSON.stringify(chunk.metadata), JSON.stringify(chunk.embedding), chunk.embeddedAt);
+            }
+        });
+        insertMany(chunks);
+    }
+    has(contentHash) {
+        const row = this.db
+            .prepare("SELECT 1 FROM embeddings WHERE content_hash = ?")
+            .get(contentHash);
+        return row !== undefined;
+    }
+    getAll() {
+        return this.rows("SELECT * FROM embeddings");
+    }
+    getPending() {
+        return this.rows("SELECT * FROM embeddings WHERE uploaded = 0");
+    }
+    markUploaded(contentHashes) {
+        if (contentHashes.length === 0)
+            return;
+        const placeholders = contentHashes.map(() => "?").join(", ");
+        this.db
+            .prepare(`UPDATE embeddings SET uploaded = 1 WHERE content_hash IN (${placeholders})`)
+            .run(...contentHashes);
+    }
+    pendingCount() {
+        const row = this.db
+            .prepare("SELECT COUNT(*) as cnt FROM embeddings WHERE uploaded = 0")
+            .get();
+        return row.cnt;
+    }
+    clearAll() {
+        this.db.prepare("DELETE FROM embeddings").run();
+        this.db.prepare("DELETE FROM meta").run();
+    }
+    pruneUploaded() {
+        this.db.prepare("DELETE FROM embeddings WHERE uploaded = 1").run();
+    }
+    migrateFromJson(jsonPath) {
+        let raw;
+        try {
+            raw = readFileSync(jsonPath, "utf-8");
+        }
+        catch {
+            return;
+        }
+        let parsed;
+        try {
+            parsed = JSON.parse(raw);
+        }
+        catch {
+            return;
+        }
+        let chunks;
+        let meta = null;
+        if (Array.isArray(parsed)) {
+            chunks = parsed;
+        }
+        else {
+            const file = parsed;
+            chunks = file.chunks ?? [];
+            meta = file._meta ?? null;
+        }
+        if (meta)
+            this.setMeta(meta);
+        if (chunks.length > 0) {
+            // Mark migrated chunks as uploaded since they were previously written to JSON
+            // (implying they were already synced to the vector store)
+            const stmt = this.db.prepare(`
+        INSERT OR IGNORE INTO embeddings
+          (content_hash, source_file, commit_hash, content, metadata_json, embedding_json, embedded_at, uploaded)
+        VALUES (?, ?, ?, ?, ?, ?, ?, 1)
+      `);
+            const insertAll = this.db.transaction((items) => {
+                for (const chunk of items) {
+                    stmt.run(chunkContentHash(chunk), chunk.sourceFile, chunk.commitHash, chunk.content, JSON.stringify(chunk.metadata), JSON.stringify(chunk.embedding), chunk.embeddedAt);
+                }
+            });
+            insertAll(chunks);
+        }
+        rename(jsonPath, jsonPath + ".migrated").catch(() => { });
+    }
+    close() {
+        this.db.close();
+    }
+    rows(sql) {
+        const rows = this.db.prepare(sql).all();
+        return rows.map((row) => ({
+            contentHash: row.content_hash,
+            sourceFile: row.source_file,
+            commitHash: row.commit_hash,
+            content: row.content,
+            metadata: (() => {
+                try {
+                    return JSON.parse(row.metadata_json);
+                }
+                catch {
+                    return {};
+                }
+            })(),
+            embedding: (() => {
+                try {
+                    return JSON.parse(row.embedding_json);
+                }
+                catch {
+                    return [];
+                }
+            })(),
+            embeddedAt: row.embedded_at,
+        }));
+    }
+}
+//# sourceMappingURL=embeddings-db.js.map

package/dist/core/embeddings-db.js.map

@@ -0,0 +1 @@
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package/dist/core/orchestrator.d.ts

@@ -16,6 +16,7 @@ export interface RAGPipelineConfig {
         maxBatchChars?: number;
         retry?: RetryOptions;
         concurrency?: number;
+        minIngestionBatchSize?: number;
         telemetry?: boolean;
         notifications?: {
             webhookUrl?: string;

package/dist/core/orchestrator.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"orchestrator.d.ts","sourceRoot":"","sources":["../../src/core/orchestrator.ts"],"names":[],"mappings":"AAMA,OAAO,EACL,WAAW,EACX,iBAAiB,EACjB,WAAW,EAEZ,MAAM,wBAAwB,CAAC;AAChC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAGtD,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAI1C,MAAM,WAAW,iBAAiB;IAChC,QAAQ,EAAE,WAAW,EAAE,CAAC;IACxB,QAAQ,EAAE,iBAAiB,CAAC;IAC5B,WAAW,EAAE,WAAW,CAAC;IACzB,OAAO,CAAC,EAAE;QACR,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,cAAc,CAAC,EAAE,MAAM,CAAC;QACxB,KAAK,CAAC,EAAE,OAAO,CAAC;QAChB,UAAU,CAAC,EAAE,OAAO,CAAC;QACrB,MAAM,CAAC,EAAE,OAAO,CAAC;QACjB,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,aAAa,CAAC,EAAE,MAAM,CAAC;QACvB,KAAK,CAAC,EAAE,YAAY,CAAC;QACrB,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,SAAS,CAAC,EAAE,OAAO,CAAC;QACpB,aAAa,CAAC,EAAE;YAAE,UAAU,CAAC,EAAE,MAAM,CAAA;SAAE,CAAC;QACxC,MAAM,CAAC,EAAE,MAAM,CAAC;KACjB,CAAC;CACH;AAyCD,qBAAa,YAAY;IACvB,OAAO,CAAC,MAAM,CAAoB;IAClC,OAAO,CAAC,UAAU,CAAS;IAC3B,OAAO,CAAC,cAAc,CAAS;gBAEnB,MAAM,EAAE,iBAAiB;IAO/B,GAAG,IAAI,OAAO,CAAC,IAAI,CAAC;CAkM3B"}
+{"version":3,"file":"orchestrator.d.ts","sourceRoot":"","sources":["../../src/core/orchestrator.ts"],"names":[],"mappings":"AAUA,OAAO,EACL,WAAW,EACX,iBAAiB,EACjB,WAAW,EAEZ,MAAM,wBAAwB,CAAC;AAChC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAGtD,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAG1C,MAAM,WAAW,iBAAiB;IAChC,QAAQ,EAAE,WAAW,EAAE,CAAC;IACxB,QAAQ,EAAE,iBAAiB,CAAC;IAC5B,WAAW,EAAE,WAAW,CAAC;IACzB,OAAO,CAAC,EAAE;QACR,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,cAAc,CAAC,EAAE,MAAM,CAAC;QACxB,KAAK,CAAC,EAAE,OAAO,CAAC;QAChB,UAAU,CAAC,EAAE,OAAO,CAAC;QACrB,MAAM,CAAC,EAAE,OAAO,CAAC;QACjB,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,aAAa,CAAC,EAAE,MAAM,CAAC;QACvB,KAAK,CAAC,EAAE,YAAY,CAAC;QACrB,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,qBAAqB,CAAC,EAAE,MAAM,CAAC;QAC/B,SAAS,CAAC,EAAE,OAAO,CAAC;QACpB,aAAa,CAAC,EAAE;YAAE,UAAU,CAAC,EAAE,MAAM,CAAA;SAAE,CAAC;QACxC,MAAM,CAAC,EAAE,MAAM,CAAC;KACjB,CAAC;CACH;AAsCD,qBAAa,YAAY;IACvB,OAAO,CAAC,MAAM,CAAoB;IAClC,OAAO,CAAC,UAAU,CAAS;IAC3B,OAAO,CAAC,cAAc,CAAS;gBAEnB,MAAM,EAAE,iBAAiB;IAO/B,GAAG,IAAI,OAAO,CAAC,IAAI,CAAC;CA4M3B"}

package/dist/core/orchestrator.js

@@ -2,16 +2,15 @@ import { GitTracker } from "./git-tracker.js";
 import { ChunkProcessor } from "./chunk-processor.js";
 import { EmbedderProcessor } from "./embedder.js";
 import { Uploader } from "./uploader.js";
+import { EmbeddingsDb } from "./embeddings-db.js";
 import { TelemetryCollector } from "./telemetry.js";
-import { createProgressBar } from "../progress/progress-bar.js";
+import { createProgressBar, } from "../progress/progress-bar.js";
 import { NullLogger } from "../logger/null-logger.js";
 import { readFile } from "fs/promises";
-import { readEmbeddingsFile } from "./embeddings-io.js";
 import { defaultChunksFile, defaultEmbeddingsFile } from "./virage-defaults.js";
-async function loadPreviousState(embeddingsFile) {
-    const { chunks } = await readEmbeddingsFile(embeddingsFile);
+function loadPreviousState(db) {
     const state = new Map();
-    for (const chunk of chunks) {
+    for (const chunk of db.getAll()) {
         if (chunk.sourceFile && chunk.commitHash) {
             state.set(chunk.sourceFile, chunk.commitHash);
         }
@@ -55,6 +54,8 @@ export class Orchestrator {
         const logger = (opts.logger ?? new NullLogger()).withTag("orchestrator");
         const telemetry = opts.telemetry ? new TelemetryCollector() : null;
         telemetry?.start();
+        const dbPath = this.embeddingsFile.replace(/\.json$/, ".db");
+        const db = new EmbeddingsDb(dbPath);
         let uploadStats = { uploaded: 0, deleted: 0 };
         logger.debug(`Config: chunksFile=${this.chunksFile} embeddingsFile=${this.embeddingsFile} force=${opts.force ?? false}`);
         try {
@@ -66,7 +67,7 @@ export class Orchestrator {
             const currentState = await gitTracker.getCurrentState();
             const previousState = opts.force
                 ? new Map()
-                : await loadPreviousState(this.embeddingsFile);
+                : loadPreviousState(db);
             const { toProcess, toDelete } = await gitTracker.getChangedFiles(previousState, currentState);
             const gitDuration = Date.now() - t1;
             logger.verbose(`Git tracking done in ${gitDuration}ms`);
@@ -78,6 +79,7 @@ export class Orchestrator {
             });
             if (toProcess.length === 0 && toDelete.length === 0 && !opts.force) {
                 logger.info("✨ No changes detected.");
+                db.close();
                 return;
             }
             logger.info(`📊 Changes: ${toProcess.length} to process, ${toDelete.length} to delete`);
@@ -108,12 +110,17 @@ export class Orchestrator {
             });
             if (chunks.length === 0) {
                 logger.warn("⚠️ No chunks generated. Exiting.");
+                db.close();
                 return;
             }
             // Step 3: Generate embeddings
             logger.info("🔢 Step 3: Generating embeddings...");
             const t3 = Date.now();
             const embedBars = [];
+            const uploader = new Uploader(this.config.vectorStore, {
+                retry: opts.retry,
+                logger: opts.logger,
+            });
             const embedder = new EmbedderProcessor(this.config.embedder, {
                 rateLimitMs: opts.rateLimitMs,
                 batchSize: opts.batchSize,
@@ -121,6 +128,7 @@ export class Orchestrator {
                 retry: opts.retry,
                 concurrency: opts.concurrency,
                 vectorStoreName: this.config.vectorStore.name,
+                minIngestionBatchSize: opts.minIngestionBatchSize,
                 logger: opts.logger,
                 onProgress: (done, total) => {
                     if (embedBars.length === 0)
@@ -128,7 +136,11 @@ export class Orchestrator {
                     embedBars[0].update(done < total ? done : total);
                 },
             });
-            const newEmbeddings = await embedder.run(this.chunksFile, opts.force || false);
+            const newEmbeddings = await embedder.run(db, this.chunksFile, opts.force || false, opts.skipUpload
+                ? undefined
+                : async () => {
+                    await uploader.uploadPending(db);
+                });
             embedBars[0]?.stop();
             const embedDuration = Date.now() - t3;
             logger.verbose(`Embedding done in ${embedDuration}ms`);
@@ -139,8 +151,7 @@ export class Orchestrator {
             });
             // Step 4: Upload
             if (opts.dryRun) {
-                const uploader = new Uploader(this.config.vectorStore);
-                const { toUpload: dryUpload, toDelete: dryDelete } = await uploader.getItemsToUpload(this.embeddingsFile, opts.force || false);
+                const { toUpload: dryUpload, toDelete: dryDelete } = await uploader.getItemsToUpload(db, opts.force || false);
                 logger.info("📤 Step 4: Upload (dry-run — no changes written)");
                 logger.info(`   Would upload: ${dryUpload.length} document(s)`);
                 logger.info(`   Would delete: ${dryDelete.length} source file(s)`);
@@ -148,11 +159,7 @@ export class Orchestrator {
             else if (!opts.skipUpload) {
                 logger.info("📤 Step 4: Uploading to vector store...");
                 const t4 = Date.now();
-                const uploader = new Uploader(this.config.vectorStore, {
-                    retry: opts.retry,
-                    logger: opts.logger,
-                });
-                uploadStats = await uploader.sync(this.embeddingsFile, opts.force || false);
+                uploadStats = await uploader.sync(db, opts.force || false);
                 const uploadDuration = Date.now() - t4;
                 logger.verbose(`Upload done in ${uploadDuration}ms`);
                 telemetry?.recordUpload({
@@ -187,6 +194,9 @@ export class Orchestrator {
             }
             throw err;
         }
+        finally {
+            db.close();
+        }
     }
 }
 //# sourceMappingURL=orchestrator.js.map

package/dist/core/orchestrator.js.map

@@ -1 +1 @@
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+{"version":3,"file":"orchestrator.js","sourceRoot":"","sources":["../../src/core/orchestrator.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,iBAAiB,EAAE,MAAM,eAAe,CAAC;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACzC,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,kBAAkB,EAAE,MAAM,gBAAgB,CAAC;AACpD,OAAO,EACL,iBAAiB,GAElB,MAAM,6BAA6B,CAAC;AAQrC,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,aAAa,CAAC;AAEvC,OAAO,EAAE,iBAAiB,EAAE,qBAAqB,EAAE,MAAM,sBAAsB,CAAC;AAwBhF,SAAS,iBAAiB,CAAC,EAAgB;IACzC,MAAM,KAAK,GAAG,IAAI,GAAG,EAAkB,CAAC;IACxC,KAAK,MAAM,KAAK,IAAI,EAAE,CAAC,MAAM,EAAE,EAAE,CAAC;QAChC,IAAI,KAAK,CAAC,UAAU,IAAI,KAAK,CAAC,UAAU,EAAE,CAAC;YACzC,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,UAAU,EAAE,KAAK,CAAC,UAAU,CAAC,CAAC;QAChD,CAAC;IACH,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED,KAAK,UAAU,kBAAkB,CAAC,UAAkB;IAClD,IAAI,CAAC;QACH,MAAM,OAAO,GAAG,MAAM,QAAQ,CAAC,UAAU,EAAE,OAAO,CAAC,CAAC;QACpD,MAAM,MAAM,GAAY,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;QAC5C,OAAO,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAAE,MAAkB,CAAC,CAAC,CAAC,EAAE,CAAC;IAC1D,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC;AAED,KAAK,UAAU,aAAa,CAC1B,GAAW,EACX,MAA2B,EAC3B,OAAgC;IAEhC,IAAI,CAAC;QACH,MAAM,KAAK,CAAC,GAAG,EAAE;YACf,MAAM,EAAE,MAAM;YACd,OAAO,EAAE,EAAE,cAAc,EAAE,kBAAkB,EAAE;YAC/C,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,EAAE,MAAM,EAAE,GAAG,OAAO,EAAE,CAAC;SAC7C,CAAC,CAAC;IACL,CAAC;IAAC,MAAM,CAAC;QACP,sCAAsC;IACxC,CAAC;AACH,CAAC;AAED,MAAM,OAAO,YAAY;IACf,MAAM,CAAoB;IAC1B,UAAU,CAAS;IACnB,cAAc,CAAS;IAE/B,YAAY,MAAyB;QACnC,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;QACrB,IAAI,CAAC,UAAU,GAAG,MAAM,CAAC,OAAO,EAAE,UAAU,IAAI,iBAAiB,EAAE,CAAC;QACpE,IAAI,CAAC,cAAc;YACjB,MAAM,CAAC,OAAO,EAAE,cAAc,IAAI,qBAAqB,EAAE,CAAC;IAC9D,CAAC;IAED,KAAK,CAAC,GAAG;QACP,MAAM,IAAI,GAAG,IAAI,CAAC,MAAM,CAAC,OAAO,IAAI,EAAE,CAAC;QACvC,MAAM,MAAM,GAAG,CAAC,IAAI,CAAC,MAAM,IAAI,IAAI,UAAU,EAAE,CAAC,CAAC,OAAO,CAAC,cAAc,CAAC,CAAC;QACzE,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,kBAAkB,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;QACnE,SAAS,EAAE,KAAK,EAAE,CAAC;QAEnB,MAAM,MAAM,GAAG,IAAI,CAAC,cAAc,CAAC,OAAO,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;QAC7D,MAAM,EAAE,GAAG,IAAI,YAAY,CAAC,MAAM,CAAC,CAAC;QAEpC,IAAI,WAAW,GAAG,EAAE,QAAQ,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;QAE9C,MAAM,CAAC,KAAK,CACV,sBAAsB,IAAI,CAAC,UAAU,mBAAmB,IAAI,CAAC,cAAc,UAAU,IAAI,CAAC,KAAK,IAAI,KAAK,EAAE,CAC3G,CAAC;QAEF,IAAI,CAAC;YACH,MAAM,CAAC,IAAI,CAAC,6BAA6B,CAAC,CAAC;YAE3C,2BAA2B;YAC3B,MAAM,CAAC,IAAI,CAAC,oCAAoC,CAAC,CAAC;YAClD,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;YACtB,MAAM,UAAU,GAAG,IAAI,UAAU,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC;YACrE,MAAM,YAAY,GAAG,MAAM,UAAU,CAAC,eAAe,EAAE,CAAC;YAExD,MAAM,aAAa,GAAG,IAAI,CAAC,KAAK;gBAC9B,CAAC,CAAC,IAAI,GAAG,EAAkB;gBAC3B,CAAC,CAAC,iBAAiB,CAAC,EAAE,CAAC,CAAC;YAE1B,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,GAAG,MAAM,UAAU,CAAC,eAAe,CAC9D,aAAa,EACb,YAAY,CACb,CAAC;YAEF,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,GAAG,EAAE,CAAC;YACpC,MAAM,CAAC,OAAO,CAAC,wBAAwB,WAAW,IAAI,CAAC,CAAC;YAExD,SAAS,EAAE,iBAAiB,CAAC;gBAC3B,UAAU,EAAE,WAAW;gBACvB,YAAY,EAAE,YAAY,CAAC,IAAI;gBAC/B,SAAS,EAAE,SAAS,CAAC,MAAM;gBAC3B,QAAQ,EAAE,QAAQ,CAAC,MAAM;aAC1B,CAAC,CAAC;YAEH,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC;gBACnE,MAAM,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAC;gBACtC,EAAE,CAAC,KAAK,EAAE,CAAC;gBACX,OAAO;YACT,CAAC;YAED,MAAM,CAAC,IAAI,CACT,eAAe,SAAS,CAAC,MAAM,gBAAgB,QAAQ,CAAC,MAAM,YAAY,CAC3E,CAAC;YAEF,wCAAwC;YACxC,MAAM,CAAC,IAAI,CAAC,iCAAiC,CAAC,CAAC;YAC/C,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;YACtB,MAAM,cAAc,GAAG,IAAI,cAAc,CACvC,IAAI,CAAC,MAAM,CAAC,QAAQ,EACpB,IAAI,CAAC,MAAM,CACZ,CAAC;YAEF,MAAM,SAAS,GAAG,IAAI,GAAG,EAGtB,CAAC;YACJ,KAAK,MAAM,IAAI,IAAI,SAAS,EAAE,CAAC;gBAC7B,MAAM,IAAI,GAAG,YAAY,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;gBACpC,IAAI,IAAI;oBAAE,SAAS,CAAC,GAAG,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC;YACtC,CAAC;YAED,MAAM,cAAc,GAAG,IAAI,CAAC,KAAK;gBAC/B,CAAC,CAAC,EAAE;gBACJ,CAAC,CAAC,MAAM,kBAAkB,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;YAE9C,MAAM,QAAQ,GAAG,iBAAiB,CAAC,UAAU,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;YACjE,MAAM,MAAM,GAAG,MAAM,cAAc,CAAC,YAAY,CAC9C,SAAS,EACT,SAAS,EACT,cAAc,EACd,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC,CAC9D,CAAC;YACF,QAAQ,CAAC,IAAI,EAAE,CAAC;YAChB,MAAM,cAAc,CAAC,eAAe,CAAC,MAAM,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC;YAE9D,MAAM,aAAa,GAAG,IAAI,CAAC,GAAG,EAAE,GAAG,EAAE,CAAC;YACtC,MAAM,CAAC,OAAO,CAAC,oBAAoB,aAAa,IAAI,CAAC,CAAC;YAEtD,SAAS,EAAE,cAAc,CAAC;gBACxB,UAAU,EAAE,aAAa;gBACzB,cAAc,EAAE,SAAS,CAAC,MAAM;gBAChC,eAAe,EAAE,MAAM,CAAC,MAAM;gBAC9B,MAAM,EAAE,CAAC;aACV,CAAC,CAAC;YAEH,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBACxB,MAAM,CAAC,IAAI,CAAC,kCAAkC,CAAC,CAAC;gBAChD,EAAE,CAAC,KAAK,EAAE,CAAC;gBACX,OAAO;YACT,CAAC;YAED,8BAA8B;YAC9B,MAAM,CAAC,IAAI,CAAC,qCAAqC,CAAC,CAAC;YACnD,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;YACtB,MAAM,SAAS,GAAkB,EAAE,CAAC;YAEpC,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE;gBACrD,KAAK,EAAE,IAAI,CAAC,KAAK;gBACjB,MAAM,EAAE,IAAI,CAAC,MA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package/dist/core/uploader.d.ts

@@ -1,6 +1,8 @@
 import { VectorStore, EmbeddedChunk } from "../interfaces/index.js";
 import type { Logger } from "../interfaces/logger.js";
 import { RetryOptions } from "./utils.js";
+import { EmbeddingsDb } from "./embeddings-db.js";
+export declare function isFatalVectorStoreError(err: unknown): boolean;
 export declare class Uploader {
     private vectorStore;
     private retryOptions;
@@ -10,11 +12,15 @@ export declare class Uploader {
         logger?: Logger;
     });
     private chunkToDocument;
-    getItemsToUpload(embeddingsFile: string, force?: boolean): Promise<{
+    getItemsToUpload(db: EmbeddingsDb, force?: boolean): Promise<{
         toUpload: EmbeddedChunk[];
         toDelete: string[];
     }>;
-    sync(embeddingsFile: string, force?: boolean): Promise<{
+    uploadPending(db: EmbeddingsDb): Promise<{
+        uploaded: number;
+        deleted: number;
+    }>;
+    sync(db: EmbeddingsDb, force?: boolean): Promise<{
         uploaded: number;
         deleted: number;
     }>;

package/dist/core/uploader.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"uploader.d.ts","sourceRoot":"","sources":["../../src/core/uploader.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,WAAW,EAEX,aAAa,EACd,MAAM,wBAAwB,CAAC;AAChC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAGtD,OAAO,EAAa,YAAY,EAAE,MAAM,YAAY,CAAC;AACrD,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AASlD,wBAAgB,uBAAuB,CAAC,GAAG,EAAE,OAAO,GAAG,OAAO,CAK7D;AAED,qBAAa,QAAQ;IACnB,OAAO,CAAC,WAAW,CAAc;IACjC,OAAO,CAAC,YAAY,CAAe;IACnC,OAAO,CAAC,MAAM,CAAS;gBAGrB,WAAW,EAAE,WAAW,EACxB,OAAO,GAAE;QAAE,KAAK,CAAC,EAAE,YAAY,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAO;IAOzD,OAAO,CAAC,eAAe;IAejB,gBAAgB,CACpB,EAAE,EAAE,YAAY,EAChB,KAAK,GAAE,OAAe,GACrB,OAAO,CAAC;QACT,QAAQ,EAAE,aAAa,EAAE,CAAC;QAC1B,QAAQ,EAAE,MAAM,EAAE,CAAC;KACpB,CAAC;IA4DI,aAAa,CACjB,EAAE,EAAE,YAAY,GACf,OAAO,CAAC;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC;IAwB3C,IAAI,CACR,EAAE,EAAE,YAAY,EAChB,KAAK,GAAE,OAAe,GACrB,OAAO,CAAC;QACT,QAAQ,EAAE,MAAM,CAAC;QACjB,OAAO,EAAE,MAAM,CAAC;KACjB,CAAC;CA4DH"}

package/dist/core/uploader.js

@@ -1,12 +1,14 @@
 import { NullLogger } from "../logger/null-logger.js";
 import { createHash } from "crypto";
-import { UploadError } from "./errors.js";
 import { withRetry } from "./utils.js";
-import { readEmbeddingsFile } from "./embeddings-io.js";
 function contentHash(chunk) {
     return (chunk.contentHash ??
         createHash("sha256").update(chunk.content).digest("hex").slice(0, 16));
 }
+export function isFatalVectorStoreError(err) {
+    const msg = String(err instanceof Error ? err.message : err).toLowerCase();
+    return /schema error|schema mismatch|unauthorized|authentication failed/.test(msg);
+}
 export class Uploader {
     vectorStore;
     retryOptions;
@@ -27,26 +29,11 @@ export class Uploader {
             collection,
         };
     }
-    async getItemsToUpload(embeddingsFile, force = false) {
-        let result;
-        try {
-            result = await readEmbeddingsFile(embeddingsFile);
-        }
-        catch (err) {
-            throw new UploadError(`Failed to load embeddings from ${embeddingsFile}: ${err instanceof Error ? err.message : String(err)}`, {
-                suggestion: "Run the pipeline without --skip-upload to regenerate embeddings first.",
-                cause: err,
-            });
-        }
-        const { meta, chunks: embeddings } = result;
-        if (embeddings.length === 0 && !result) {
-            throw new UploadError(`No embeddings found at ${embeddingsFile}`, {
-                suggestion: "Run the pipeline without --skip-upload to regenerate embeddings first.",
-            });
-        }
-        this.logger.info(`📖 Loaded ${embeddings.length} embeddings from ${embeddingsFile}`);
-        // If the vector store changed since the last run, force a full re-upload to ensure
-        // the new store starts with consistent state.
+    async getItemsToUpload(db, force = false) {
+        const meta = db.getMeta();
+        const embeddings = db.getAll();
+        this.logger.info(`📖 Loaded ${embeddings.length} embeddings from db`);
+        // If the vector store changed since the last run, force a full re-upload.
         let effectiveForce = force;
         if (!force &&
             meta?.vectorStoreName &&
@@ -85,10 +72,27 @@ export class Uploader {
             toDelete: [...toDeleteSet],
         };
     }
-    async sync(embeddingsFile, force = false) {
+    async uploadPending(db) {
+        const pending = db.getPending();
+        if (pending.length === 0)
+            return { uploaded: 0, deleted: 0 };
+        this.logger.verbose(`📤 Uploading ${pending.length} pending embeddings...`);
+        const batchSize = 50;
+        for (let i = 0; i < pending.length; i += batchSize) {
+            const batch = pending.slice(i, i + batchSize);
+            const documents = batch.map((e) => this.chunkToDocument(e));
+            await withRetry(() => this.vectorStore.upsert(documents), {
+                ...this.retryOptions,
+                isRetryable: (err) => !isFatalVectorStoreError(err),
+            }, this.logger);
+            db.markUploaded(batch.map((e) => contentHash(e)));
+        }
+        return { uploaded: pending.length, deleted: 0 };
+    }
+    async sync(db, force = false) {
         this.logger.info("📤 Starting incremental upload...");
         await this.vectorStore.initialize();
-        const { toUpload, toDelete } = await this.getItemsToUpload(embeddingsFile, force);
+        const { toUpload, toDelete } = await this.getItemsToUpload(db, force);
         this.logger.info(`📊 Need to upload: ${toUpload.length} documents`);
         this.logger.info(`   Need to delete: ${toDelete.length} files`);
         if (toUpload.length === 0 && toDelete.length === 0) {
@@ -96,16 +100,23 @@ export class Uploader {
             return { uploaded: 0, deleted: 0 };
         }
         if (toDelete.length > 0) {
-            await withRetry(() => this.vectorStore.deleteBySourceFile(toDelete), this.retryOptions, this.logger);
+            await withRetry(() => this.vectorStore.deleteBySourceFile(toDelete), {
+                ...this.retryOptions,
+                isRetryable: (err) => !isFatalVectorStoreError(err),
+            }, this.logger);
             this.logger.verbose(`🗑️ Deleted ${toDelete.length} obsolete docs`);
         }
         if (toUpload.length > 0) {
-            const documents = toUpload.map((e) => this.chunkToDocument(e));
             const batchSize = 50;
-            const totalBatches = Math.ceil(documents.length / batchSize);
-            for (let i = 0; i < documents.length; i += batchSize) {
-                const batch = documents.slice(i, i + batchSize);
-                await withRetry(() => this.vectorStore.upsert(batch), this.retryOptions, this.logger);
+            const totalBatches = Math.ceil(toUpload.length / batchSize);
+            for (let i = 0; i < toUpload.length; i += batchSize) {
+                const batch = toUpload.slice(i, i + batchSize);
+                const documents = batch.map((e) => this.chunkToDocument(e));
+                await withRetry(() => this.vectorStore.upsert(documents), {
+                    ...this.retryOptions,
+                    isRetryable: (err) => !isFatalVectorStoreError(err),
+                }, this.logger);
+                db.markUploaded(batch.map((e) => contentHash(e)));
                 const batchNum = Math.floor(i / batchSize) + 1;
                 this.logger.verbose(`  Batch ${batchNum}/${totalBatches}: ${batch.length} docs`);
                 this.logger.silly(`  IDs: ${batch

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package/dist/progress/progress-bar.js

@@ -4,7 +4,7 @@ export function createProgressBar(label, total) {
         return { update: () => { }, stop: () => { } };
     }
     const bar = new cliProgress.SingleBar({
-        format: `${label} [{bar}] {percentage}% | {value}/{total} | ETA: {eta_formatted}`,
+        format: `${label} [{bar}] {percentage}% | {value}/{total} | {duration_formatted} elapsed | ETA: {eta_formatted}`,
         clearOnComplete: false,
         hideCursor: true,
     }, cliProgress.Presets.shades_classic);

package/dist/progress/progress-bar.js.map

@@ -1 +1 @@
-{"version":3,"file":"progress-bar.js","sourceRoot":"","sources":["../../src/progress/progress-bar.ts"],"names":[],"mappings":"AAAA,OAAO,WAAW,MAAM,cAAc,CAAC;AAOvC,MAAM,UAAU,iBAAiB,CAAC,KAAa,EAAE,KAAa;IAC5D,IAAI,KAAK,KAAK,CAAC,EAAE,CAAC;QAChB,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,GAAE,CAAC,EAAE,IAAI,EAAE,GAAG,EAAE,GAAE,CAAC,EAAE,CAAC;IAC9C,CAAC;IAED,MAAM,GAAG,GAAG,IAAI,WAAW,CAAC,SAAS,CACnC;QACE,MAAM,EAAE,GAAG,KAAK,iEAAiE;QACjF,eAAe,EAAE,KAAK;QACtB,UAAU,EAAE,IAAI;KACjB,EACD,WAAW,CAAC,OAAO,CAAC,cAAc,CACnC,CAAC;IACF,GAAG,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC;IAEpB,OAAO;QACL,MAAM,CAAC,OAAe;YACpB,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QACtB,CAAC;QACD,IAAI,CAAC,YAAqB;YACxB,GAAG,CAAC,IAAI,EAAE,CAAC;YACX,IAAI,YAAY;gBAAE,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;QAC9C,CAAC;KACF,CAAC;AACJ,CAAC"}
+{"version":3,"file":"progress-bar.js","sourceRoot":"","sources":["../../src/progress/progress-bar.ts"],"names":[],"mappings":"AAAA,OAAO,WAAW,MAAM,cAAc,CAAC;AAOvC,MAAM,UAAU,iBAAiB,CAAC,KAAa,EAAE,KAAa;IAC5D,IAAI,KAAK,KAAK,CAAC,EAAE,CAAC;QAChB,OAAO,EAAE,MAAM,EAAE,GAAG,EAAE,GAAE,CAAC,EAAE,IAAI,EAAE,GAAG,EAAE,GAAE,CAAC,EAAE,CAAC;IAC9C,CAAC;IAED,MAAM,GAAG,GAAG,IAAI,WAAW,CAAC,SAAS,CACnC;QACE,MAAM,EAAE,GAAG,KAAK,gGAAgG;QAChH,eAAe,EAAE,KAAK;QACtB,UAAU,EAAE,IAAI;KACjB,EACD,WAAW,CAAC,OAAO,CAAC,cAAc,CACnC,CAAC;IACF,GAAG,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC;IAEpB,OAAO;QACL,MAAM,CAAC,OAAe;YACpB,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QACtB,CAAC;QACD,IAAI,CAAC,YAAqB;YACxB,GAAG,CAAC,IAAI,EAAE,CAAC;YACX,IAAI,YAAY;gBAAE,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;QAC9C,CAAC;KACF,CAAC;AACJ,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vivantel/virage-core",
-  "version": "0.2.3",
+  "version": "0.2.4",
   "type": "module",
   "description": "Core RAG pipeline tools - universal chunking, embedding, vector store interfaces",
   "repository": {
@@ -55,6 +55,7 @@
   "license": "MIT",
   "dependencies": {
     "@inquirer/prompts": "^8.5.2",
+    "better-sqlite3": "^12.10.0",
     "chokidar": "^5.0.0",
     "cli-progress": "^3.12.0",
     "commander": "^15.0.0",
@@ -66,6 +67,7 @@
   "devDependencies": {
     "@eslint/js": "^10.0.1",
     "@supabase/supabase-js": "^2.106.2",
+    "@types/better-sqlite3": "^7.6.0",
     "@types/cli-progress": "^3.11.6",
     "@types/node": "^25.9.1",
     "eslint": "^10.4.1",

package/schemas/virage.config.schema.json

@@ -90,6 +90,11 @@
         "batchSize": { "type": "number" },
         "maxBatchChars": { "type": "number" },
         "concurrency": { "type": "number" },
+        "minIngestionBatchSize": {
+          "type": "integer",
+          "minimum": 1,
+          "description": "Upload embeddings to the vector store mid-run when pending count reaches this threshold."
+        },
         "telemetry": { "type": "boolean" },
         "notifications": {
           "type": "object",