@vitessce/vit-s 4.0.0 → 4.0.2

package/dist/index.js

@@ -33125,6 +33125,7 @@ const CoordinationType$1 = {
   SPATIAL_CHANNEL_LABELS_VISIBLE: "spatialChannelLabelsVisible",
   SPATIAL_CHANNEL_LABELS_ORIENTATION: "spatialChannelLabelsOrientation",
   SPATIAL_CHANNEL_LABEL_SIZE: "spatialChannelLabelSize",
+  SPATIAL_CHANNELS_SORT_ORDER: "spatialChannelsSortOrder",
   // Multi-sample / comparative
   SAMPLE_TYPE: "sampleType",
   SAMPLE_SELECTION: "sampleSelection",
@@ -33703,6 +33704,7 @@ const AUTO_INDEPENDENT_COORDINATION_TYPES = [
     CoordinationType$1.SPATIAL_CHANNEL_LABELS_VISIBLE,
     CoordinationType$1.SPATIAL_CHANNEL_LABELS_ORIENTATION,
     CoordinationType$1.SPATIAL_CHANNEL_LABEL_SIZE,
+    CoordinationType$1.SPATIAL_CHANNELS_SORT_ORDER,
     CoordinationType$1.PHOTOMETRIC_INTERPRETATION
   ],
   [ViewType$1.HEATMAP]: [
@@ -33884,7 +33886,8 @@ const AUTO_INDEPENDENT_COORDINATION_TYPES = [
     CoordinationType$1.LEGEND_VISIBLE,
     CoordinationType$1.SPATIAL_CHANNEL_LABELS_VISIBLE,
     CoordinationType$1.SPATIAL_CHANNEL_LABELS_ORIENTATION,
-    CoordinationType$1.SPATIAL_CHANNEL_LABEL_SIZE
+    CoordinationType$1.SPATIAL_CHANNEL_LABEL_SIZE,
+    CoordinationType$1.SPATIAL_CHANNELS_SORT_ORDER
   ],
   [ViewType$1.GENOMIC_PROFILES]: [
     CoordinationType$1.DATASET,
@@ -34105,7 +34108,7 @@ const AUTO_INDEPENDENT_COORDINATION_TYPES = [
     CoordinationType$1.HIERARCHY_LEVELS
   ]
 });
-const version = "4.0.0";
+const version = "4.0.2";
 const META_VERSION = {
   version
 };
@@ -34604,7 +34607,18 @@ z.object({
 z.object({
   projectionAnnotationSpacing: z.number(),
   featureIndexProp: z.string().optional().describe("The name of the Neuroglancer AnnotationProperty containing feature IDs. For example, specify 'gene' to use prop_gene() in the Neuroglancer shader code."),
-  pointIndexProp: z.string().optional().describe("The name of the Neuroglancer AnnotationProperty containing point IDs. For example, specify 'point_id' to use prop_point_id() in the Neuroglancer shader code.")
+  pointIndexProp: z.string().optional().describe("The name of the Neuroglancer AnnotationProperty containing point IDs. For example, specify 'point_id' to use prop_point_id() in the Neuroglancer shader code."),
+  transform: z.object({
+    matrix: z.array(z.array(z.number())),
+    outputDimensions: z.record(z.tuple([z.number(), z.string()]))
+  }).optional().describe("A coordinate transformation matrix to apply to the annotation layer source to map annotation coordinates to the global coordinate space."),
+  // Note: See comments in neuroglancer-sorger.js
+  // We may remove these in the future, pending clarification
+  // to questions in the tissue-map-tools repo
+  // - https://github.com/hms-dbmi/tissue-map-tools/issues/20
+  // - https://github.com/hms-dbmi/tissue-map-tools/issues/38
+  quantitativeColorProp: z.string().optional(),
+  quantitativeColorMax: z.number().optional()
 }).partial().nullable();
 z.object({
   obsIndex: z.string(),

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/vit-s",
-  "version": "4.0.0",
+  "version": "4.0.2",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -31,17 +31,17 @@
     "react-error-boundary": "^5.0.0",
     "@placemarkio/flat-drop-files": "^1.0.2",
     "zarrita": "0.6.1",
-    "@vitessce/abstract": "4.0.0",
-    "@vitessce/styles": "4.0.0",
-    "@vitessce/error": "4.0.0",
-    "@vitessce/schemas": "4.0.0",
-    "@vitessce/utils": "4.0.0",
-    "@vitessce/sets-utils": "4.0.0",
-    "@vitessce/plugins": "4.0.0",
-    "@vitessce/zarr-utils": "4.0.0",
-    "@vitessce/constants-internal": "4.0.0",
-    "@vitessce/config": "4.0.0",
-    "@vitessce/globals": "4.0.0"
+    "@vitessce/error": "4.0.2",
+    "@vitessce/styles": "4.0.2",
+    "@vitessce/abstract": "4.0.2",
+    "@vitessce/constants-internal": "4.0.2",
+    "@vitessce/plugins": "4.0.2",
+    "@vitessce/schemas": "4.0.2",
+    "@vitessce/zarr-utils": "4.0.2",
+    "@vitessce/utils": "4.0.2",
+    "@vitessce/sets-utils": "4.0.2",
+    "@vitessce/globals": "4.0.2",
+    "@vitessce/config": "4.0.2"
   },
   "devDependencies": {
     "@testing-library/jest-dom": "^6.6.3",
@@ -50,7 +50,7 @@
     "react-dom": "19.2.6",
     "vite": "^7.0.0",
     "vitest": "^3.1.4",
-    "@vitessce/types": "4.0.0"
+    "@vitessce/types": "4.0.2"
   },
   "peerDependencies": {
     "react": "^16.8.0 || ^17.0.0 || ^18.0.0 || ^19.0.0"