@vitessce/vit-s 3.8.8 → 3.8.10

package/dist/index.js

@@ -22313,8 +22313,8 @@ function useQuery(options, queryClient) {
 }
 var freeGlobal = typeof global == "object" && global && global.Object === Object && global;
 var freeSelf = typeof self == "object" && self && self.Object === Object && self;
-var root$1 = freeGlobal || freeSelf || Function("return this")();
-var Symbol$1 = root$1.Symbol;
+var root = freeGlobal || freeSelf || Function("return this")();
+var Symbol$1 = root.Symbol;
 var objectProto$d = Object.prototype;
 var hasOwnProperty$a = objectProto$d.hasOwnProperty;
 var nativeObjectToString$1 = objectProto$d.toString;
@@ -22439,7 +22439,7 @@ function isFunction(value) {
   var tag = baseGetTag(value);
   return tag == funcTag$2 || tag == genTag$1 || tag == asyncTag || tag == proxyTag;
 }
-var coreJsData = root$1["__core-js_shared__"];
+var coreJsData = root["__core-js_shared__"];
 var maskSrcKey = function() {
   var uid = /[^.]+$/.exec(coreJsData && coreJsData.keys && coreJsData.keys.IE_PROTO || "");
   return uid ? "Symbol(src)_1." + uid : "";
@@ -22484,7 +22484,7 @@ function getNative(object, key) {
   var value = getValue(object, key);
   return baseIsNative(value) ? value : void 0;
 }
-var WeakMap$1 = getNative(root$1, "WeakMap");
+var WeakMap$1 = getNative(root, "WeakMap");
 var objectCreate = Object.create;
 var baseCreate = /* @__PURE__ */ function() {
   function object() {
@@ -22657,7 +22657,7 @@ function stubFalse() {
 var freeExports$2 = typeof exports == "object" && exports && !exports.nodeType && exports;
 var freeModule$2 = freeExports$2 && typeof module == "object" && module && !module.nodeType && module;
 var moduleExports$2 = freeModule$2 && freeModule$2.exports === freeExports$2;
-var Buffer$1 = moduleExports$2 ? root$1.Buffer : void 0;
+var Buffer$1 = moduleExports$2 ? root.Buffer : void 0;
 var nativeIsBuffer = Buffer$1 ? Buffer$1.isBuffer : void 0;
 var isBuffer$1 = nativeIsBuffer || stubFalse;
 var argsTag$2 = "[object Arguments]", arrayTag$2 = "[object Array]", boolTag$3 = "[object Boolean]", dateTag$3 = "[object Date]", errorTag$2 = "[object Error]", funcTag$1 = "[object Function]", mapTag$5 = "[object Map]", numberTag$3 = "[object Number]", objectTag$3 = "[object Object]", regexpTag$3 = "[object RegExp]", setTag$5 = "[object Set]", stringTag$3 = "[object String]", weakMapTag$2 = "[object WeakMap]";
@@ -22844,7 +22844,7 @@ ListCache.prototype["delete"] = listCacheDelete;
 ListCache.prototype.get = listCacheGet;
 ListCache.prototype.has = listCacheHas;
 ListCache.prototype.set = listCacheSet;
-var Map$1 = getNative(root$1, "Map");
+var Map$1 = getNative(root, "Map");
 function mapCacheClear() {
   this.size = 0;
   this.__data__ = {
@@ -23038,7 +23038,7 @@ Stack.prototype.set = stackSet;
 var freeExports = typeof exports == "object" && exports && !exports.nodeType && exports;
 var freeModule = freeExports && typeof module == "object" && module && !module.nodeType && module;
 var moduleExports = freeModule && freeModule.exports === freeExports;
-var Buffer2 = moduleExports ? root$1.Buffer : void 0;
+var Buffer2 = moduleExports ? root.Buffer : void 0;
 Buffer2 ? Buffer2.allocUnsafe : void 0;
 function cloneBuffer(buffer, isDeep) {
   {
@@ -23077,9 +23077,9 @@ function baseGetAllKeys(object, keysFunc, symbolsFunc) {
 function getAllKeys(object) {
   return baseGetAllKeys(object, keys, getSymbols);
 }
-var DataView$1 = getNative(root$1, "DataView");
-var Promise$1 = getNative(root$1, "Promise");
-var Set$1 = getNative(root$1, "Set");
+var DataView$1 = getNative(root, "DataView");
+var Promise$1 = getNative(root, "Promise");
+var Set$1 = getNative(root, "Set");
 var mapTag$4 = "[object Map]", objectTag$2 = "[object Object]", promiseTag = "[object Promise]", setTag$4 = "[object Set]", weakMapTag$1 = "[object WeakMap]";
 var dataViewTag$3 = "[object DataView]";
 var dataViewCtorString = toSource(DataView$1), mapCtorString = toSource(Map$1), promiseCtorString = toSource(Promise$1), setCtorString = toSource(Set$1), weakMapCtorString = toSource(WeakMap$1);
@@ -23114,7 +23114,7 @@ function initCloneArray(array) {
   }
   return result;
 }
-var Uint8Array$1 = root$1.Uint8Array;
+var Uint8Array$1 = root.Uint8Array;
 function cloneArrayBuffer(arrayBuffer) {
   var result = new arrayBuffer.constructor(arrayBuffer.byteLength);
   new Uint8Array$1(result).set(new Uint8Array$1(arrayBuffer));
@@ -23624,7 +23624,7 @@ function createBaseEach(eachFunc, fromRight) {
 }
 var baseEach = createBaseEach(baseForOwn);
 var now = function() {
-  return root$1.Date.now();
+  return root.Date.now();
 };
 var FUNC_ERROR_TEXT = "Expected a function";
 var nativeMax$1 = Math.max, nativeMin = Math.min;
@@ -32251,7 +32251,7 @@ const AUTO_INDEPENDENT_COORDINATION_TYPES = [
     CoordinationType$1.HIERARCHY_LEVELS
   ]
 });
-const version = "3.8.8";
+const version = "3.8.10";
 const META_VERSION = {
   version
 };
@@ -34899,9 +34899,6 @@ class Location {
     return new Location(this.store, decodeURIComponent(new URL(path, root2).pathname));
   }
 }
-function root(store) {
-  return new Location(store ?? /* @__PURE__ */ new Map());
-}
 class Group extends Location {
   constructor(store, path, metadata) {
     super(store, path);
@@ -36087,7 +36084,7 @@ class SpatialDataAutoConfig extends AbstractAutoConfig {
       return relPath.match(/^(tables|table|images|labels|shapes|points)\/([^/]*)$/);
     });
     availableElements.forEach(({ path, attrs }) => {
-      var _a3, _b2, _c2, _d2, _e2, _f2;
+      var _a3, _b2, _c2, _d2, _e2;
       const relPath = path.substring(1);
       const firstCoordinateSystem = (_e2 = (_d2 = (_c2 = (_b2 = (_a3 = attrs == null ? void 0 : attrs.multiscales) == null ? void 0 : _a3[0]) == null ? void 0 : _b2.coordinateTransformations) == null ? void 0 : _c2[0]) == null ? void 0 : _d2.output) == null ? void 0 : _e2.name;
       if (relPath.match(/^(images)\/([^/]*)$/)) {
@@ -36105,13 +36102,7 @@ class SpatialDataAutoConfig extends AbstractAutoConfig {
         };
       }
       if (relPath.match(/^(shapes)\/([^/]*)$/)) {
-        options.obsSpots = {
-          path: relPath,
-          coordinateSystem: firstCoordinateSystem
-        };
-      }
-      if (relPath.match(/^(points)\/([^/]*)$/)) {
-        options.obsPoints = {
+        options.obsSegmentations = {
           path: relPath,
           coordinateSystem: firstCoordinateSystem
         };
@@ -36125,21 +36116,6 @@ class SpatialDataAutoConfig extends AbstractAutoConfig {
             // region: null,
           };
         }
-        const hasObs = tableEls.find((el) => el.path === `${path}/obs`);
-        if (hasObs) {
-          const columnOrder = (_f2 = hasObs.attrs) == null ? void 0 : _f2["column-order"];
-          options.obsSets = {
-            // region: null,
-            tablePath: relPath,
-            obsSets: columnOrder.map((c) => ({
-              // TODO: determine whether this column is string/categorical.
-              // TODO: determine whether this column contains too many
-              // categories to make sense to consider a cell set.
-              path: `${hasObs.path.substring(1)}/${c}`,
-              name: c
-            }))
-          };
-        }
       }
     });
     return options;
@@ -36294,8 +36270,16 @@ async function parsedUrlToZmetadata(parsedUrl) {
       store = await withConsolidated(initialStore, { metadataKey: "zmetadata" });
     }
     const contents = store.contents();
+    const consolidatedRoot = await open(store, { kind: "group" });
     promises = contents.map(async (value) => {
-      const item = await open(root(store).resolve(value.path));
+      let item;
+      try {
+        item = await open(consolidatedRoot.resolve(value.path), { kind: value.kind });
+      } catch {
+        item = {
+          attrs: {}
+        };
+      }
       return {
         ...value,
         attrs: item.attrs
@@ -36326,9 +36310,10 @@ async function parsedUrlToZmetadata(parsedUrl) {
       // Note: For spatialData, we assume the store is always consolidated.
       // TODO: throw error if spatialdata + not consolidated?
     ];
+    const storeRoot = await open(store, { kind: "group" });
     promises = keysToTry.map(async (k) => {
       try {
-        const item = await open(root(store).resolve(k));
+        const item = await open(storeRoot.resolve(k));
         return {
           path: k,
           kind: item.kind,
@@ -44474,7 +44459,7 @@ function useClosestVitessceContainerSize(ref, sidebarWidth) {
           clientHeight: componentHeight,
           clientWidth: componentWidth
         } = ref.current.closest(`.${VITESSCE_CONTAINER}`);
-        setWidth(componentWidth - sidebarWidth);
+        setWidth(componentWidth - (sidebarWidth ?? 0));
         setHeight(componentHeight);
       }
     }

package/dist-tsc/hooks.js

@@ -148,7 +148,7 @@ export function useClosestVitessceContainerSize(ref, sidebarWidth) {
         function onWindowResize() {
             if (ref.current) {
                 const { clientHeight: componentHeight, clientWidth: componentWidth, } = ref.current.closest(`.${VITESSCE_CONTAINER}`);
-                setWidth(componentWidth - sidebarWidth);
+                setWidth(componentWidth - (sidebarWidth ?? 0));
                 setHeight(componentHeight);
             }
         }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/vit-s",
-  "version": "3.8.8",
+  "version": "3.8.10",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -30,16 +30,16 @@
     "react-error-boundary": "^5.0.0",
     "@placemarkio/flat-drop-files": "^1.0.2",
     "zarrita": "0.5.4",
-    "@vitessce/styles": "3.8.8",
-    "@vitessce/abstract": "3.8.8",
-    "@vitessce/error": "3.8.8",
-    "@vitessce/constants-internal": "3.8.8",
-    "@vitessce/plugins": "3.8.8",
-    "@vitessce/schemas": "3.8.8",
-    "@vitessce/utils": "3.8.8",
-    "@vitessce/sets-utils": "3.8.8",
-    "@vitessce/config": "3.8.8",
-    "@vitessce/globals": "3.8.8"
+    "@vitessce/styles": "3.8.10",
+    "@vitessce/abstract": "3.8.10",
+    "@vitessce/error": "3.8.10",
+    "@vitessce/constants-internal": "3.8.10",
+    "@vitessce/plugins": "3.8.10",
+    "@vitessce/schemas": "3.8.10",
+    "@vitessce/utils": "3.8.10",
+    "@vitessce/sets-utils": "3.8.10",
+    "@vitessce/config": "3.8.10",
+    "@vitessce/globals": "3.8.10"
   },
   "devDependencies": {
     "@testing-library/jest-dom": "^6.6.3",
@@ -48,7 +48,7 @@
     "react-dom": "18.3.1",
     "vite": "^7.0.0",
     "vitest": "^3.1.4",
-    "@vitessce/types": "3.8.8"
+    "@vitessce/types": "3.8.10"
   },
   "peerDependencies": {
     "react": "^16.8.0 || ^17.0.0 || ^18.0.0 || ^19.0.0"

package/src/hooks.js

@@ -180,7 +180,7 @@ export function useClosestVitessceContainerSize(ref, sidebarWidth) {
         const {
           clientHeight: componentHeight, clientWidth: componentWidth,
         } = ref.current.closest(`.${VITESSCE_CONTAINER}`);
-        setWidth(componentWidth - sidebarWidth);
+        setWidth(componentWidth - (sidebarWidth ?? 0));
         setHeight(componentHeight);
       }
     }