@vitessce/vit-s 3.6.7 → 3.6.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.js +1383 -881
- package/dist-tsc/TitleInfo.d.ts.map +1 -1
- package/dist-tsc/TitleInfo.js +28 -7
- package/dist-tsc/VitS.d.ts.map +1 -1
- package/dist-tsc/VitS.js +11 -2
- package/dist-tsc/data-hook-utils.d.ts +6 -12
- package/dist-tsc/data-hook-utils.d.ts.map +1 -1
- package/dist-tsc/data-hook-utils.js +11 -38
- package/dist-tsc/data-hooks-multilevel-utils.d.ts +51 -5
- package/dist-tsc/data-hooks-multilevel-utils.d.ts.map +1 -1
- package/dist-tsc/data-hooks-multilevel-utils.js +68 -42
- package/dist-tsc/data-hooks-multilevel.d.ts +63 -7
- package/dist-tsc/data-hooks-multilevel.d.ts.map +1 -1
- package/dist-tsc/data-hooks-multilevel.js +70 -14
- package/dist-tsc/data-hooks.d.ts +275 -34
- package/dist-tsc/data-hooks.d.ts.map +1 -1
- package/dist-tsc/data-hooks.js +282 -53
- package/dist-tsc/hooks.js +1 -1
- package/package.json +12 -11
- package/src/TitleInfo.js +64 -3
- package/src/VitS.js +11 -1
- package/src/data-hook-utils.js +10 -44
- package/src/data-hooks-multilevel-utils.js +66 -48
- package/src/data-hooks-multilevel.js +70 -14
- package/src/data-hooks.js +285 -57
- package/src/hooks.js +1 -1
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@@ -2,6 +2,14 @@ import { useMemo } from 'react';
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import { CoordinationType } from '@vitessce/constants-internal';
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import { useComplexCoordination, useComplexCoordinationSecondary, } from './state/hooks.js';
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import { useFeatureSelectionMultiLevel, useObsFeatureMatrixIndicesMultiLevel, useObsLocationsMultiLevel, useObsSetsMultiLevel, useObsLabelsMultiLevel, } from './data-hooks-multilevel-utils.js';
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/**
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* Wrapper around useFeatureSelectionMultiLevel.
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* @param {object} coordinationScopes
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* @param {object} coordinationScopesBy
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* @param {object} loaders
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* @param {string} dataset
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* @returns {array} [featureData, loadedSelections, extents, normData, featureStatus, errors]
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*/
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export function useSegmentationMultiFeatureSelection(coordinationScopes, coordinationScopesBy, loaders, dataset) {
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const obsFeatureMatrixCoordination = useComplexCoordinationSecondary([
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CoordinationType.OBS_TYPE,
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@@ -30,9 +38,17 @@ export function useSegmentationMultiFeatureSelection(coordinationScopes, coordin
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// entries in the full dependency array.
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JSON.stringify(useMemoDependency.length > 0 ? useMemoDependency : [null]),
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]);
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const [featureData, loadedSelections, extents, normData, featureStatus,] = useFeatureSelectionMultiLevel(loaders, dataset, false, matchOnObj, selections, 2);
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return [featureData, loadedSelections, extents, normData, featureStatus];
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const [featureData, loadedSelections, extents, normData, featureStatus, errors,] = useFeatureSelectionMultiLevel(loaders, dataset, false, matchOnObj, selections, 2);
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return [featureData, loadedSelections, extents, normData, featureStatus, errors];
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}
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/**
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* Wrapper around useFeatureSelectionMultiLevel.
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* @param {object} coordinationScopes
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* @param {object} coordinationScopesBy
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* @param {object} loaders
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* @param {string} dataset
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* @returns {array} [featureData, loadedSelections, extents, normData, featureStatus, errors]
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*/
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export function useSpotMultiFeatureSelection(coordinationScopes, coordinationScopesBy, loaders, dataset) {
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const obsFeatureMatrixCoordination = useComplexCoordination([
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CoordinationType.OBS_TYPE,
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@@ -57,9 +73,17 @@ export function useSpotMultiFeatureSelection(coordinationScopes, coordinationSco
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...Object.values(featureSelectionCoordination[0] || {})
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.flatMap(layerVal => layerVal.featureSelection),
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]);
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const [featureData, loadedSelections, extents, normData, featureStatus,] = useFeatureSelectionMultiLevel(loaders, dataset, false, matchOnObj, selections, 1);
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return [featureData, loadedSelections, extents, normData, featureStatus];
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const [featureData, loadedSelections, extents, normData, featureStatus, errors,] = useFeatureSelectionMultiLevel(loaders, dataset, false, matchOnObj, selections, 1);
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return [featureData, loadedSelections, extents, normData, featureStatus, errors];
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}
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/**
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* Wrapper around useObsFeatureMatrixIndicesMultiLevel.
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* @param {object} coordinationScopes
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* @param {object} coordinationScopesBy
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* @param {object} loaders
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* @param {string} dataset
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* @returns {array} [indicesData, status, errors]
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*/
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export function useSegmentationMultiObsFeatureMatrixIndices(coordinationScopes, coordinationScopesBy, loaders, dataset) {
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const obsFeatureMatrixCoordination = useComplexCoordinationSecondary([
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CoordinationType.OBS_TYPE,
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@@ -71,9 +95,17 @@ export function useSegmentationMultiObsFeatureMatrixIndices(coordinationScopes,
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// use coordinationScopes and coordinationScopesBy which are
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// indirect dependencies here.
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[coordinationScopes, coordinationScopesBy]);
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const [indicesData, indicesDataStatus] = useObsFeatureMatrixIndicesMultiLevel(loaders, dataset, false, matchOnObj, 2);
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return [indicesData, indicesDataStatus];
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const [indicesData, indicesDataStatus, indicesDataErrors] = useObsFeatureMatrixIndicesMultiLevel(loaders, dataset, false, matchOnObj, 2);
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return [indicesData, indicesDataStatus, indicesDataErrors];
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}
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/**
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* Wrapper around useObsFeatureMatrixIndicesMultiLevel.
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* @param {object} coordinationScopes
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* @param {object} coordinationScopesBy
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* @param {object} loaders
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* @param {string} dataset
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* @returns {array} [indicesData, status, errors]
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*/
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export function useSpotMultiObsFeatureMatrixIndices(coordinationScopes, coordinationScopesBy, loaders, dataset) {
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const obsFeatureMatrixCoordination = useComplexCoordination([
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CoordinationType.OBS_TYPE,
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@@ -85,9 +117,17 @@ export function useSpotMultiObsFeatureMatrixIndices(coordinationScopes, coordina
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// use coordinationScopes and coordinationScopesBy which are
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// indirect dependencies here.
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[coordinationScopes, coordinationScopesBy]);
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const [indicesData, indicesDataStatus] = useObsFeatureMatrixIndicesMultiLevel(loaders, dataset, false, matchOnObj, 1);
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return [indicesData, indicesDataStatus];
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const [indicesData, indicesDataStatus, indicesDataErrors] = useObsFeatureMatrixIndicesMultiLevel(loaders, dataset, false, matchOnObj, 1);
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return [indicesData, indicesDataStatus, indicesDataErrors];
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}
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/**
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* Wrapper around useObsLabelsMultiLevel.
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* @param {object} coordinationScopes
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* @param {object} coordinationScopesBy
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* @param {object} loaders
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* @param {string} dataset
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* @returns {array} [data, status, errors]
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*/
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export function usePointMultiObsLabels(coordinationScopes, coordinationScopesBy, loaders, dataset) {
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const obsLabelsCoordination = useComplexCoordination([
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CoordinationType.OBS_TYPE,
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@@ -98,9 +138,17 @@ export function usePointMultiObsLabels(coordinationScopes, coordinationScopesBy,
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// use coordinationScopes and coordinationScopesBy which are
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// indirect dependencies here.
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[coordinationScopes, coordinationScopesBy]);
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const [indicesData, indicesDataStatus] = useObsLabelsMultiLevel(loaders, dataset, false, matchOnObj, 1);
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return [indicesData, indicesDataStatus];
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const [indicesData, indicesDataStatus, indicesDataErrors] = useObsLabelsMultiLevel(loaders, dataset, false, matchOnObj, 1);
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return [indicesData, indicesDataStatus, indicesDataErrors];
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}
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/**
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* Wrapper around useObsLocationsMultiLevel.
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* @param {object} coordinationScopes
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* @param {object} coordinationScopesBy
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* @param {object} loaders
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* @param {string} dataset
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* @returns {array} [data, status, errors]
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*/
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export function useSegmentationMultiObsLocations(coordinationScopes, coordinationScopesBy, loaders, dataset) {
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const obsTypeCoordination = useComplexCoordinationSecondary([
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CoordinationType.OBS_TYPE,
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@@ -110,9 +158,17 @@ export function useSegmentationMultiObsLocations(coordinationScopes, coordinatio
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// use coordinationScopes and coordinationScopesBy which are
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// indirect dependencies here.
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[coordinationScopes, coordinationScopesBy]);
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const [indicesData, indicesDataStatus] = useObsLocationsMultiLevel(loaders, dataset, false, matchOnObj, 2);
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return [indicesData, indicesDataStatus];
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const [indicesData, indicesDataStatus, indicesDataErrors] = useObsLocationsMultiLevel(loaders, dataset, false, matchOnObj, 2);
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return [indicesData, indicesDataStatus, indicesDataErrors];
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}
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/**
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* Wrapper around useObsSetsMultiLevel.
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* @param {object} coordinationScopes
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* @param {object} coordinationScopesBy
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* @param {object} loaders
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* @param {string} dataset
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* @returns {array} [data, status, errors]
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*/
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export function useSegmentationMultiObsSets(coordinationScopes, coordinationScopesBy, loaders, dataset) {
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const obsTypeCoordination = useComplexCoordinationSecondary([
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CoordinationType.OBS_TYPE,
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// use coordinationScopes and coordinationScopesBy which are
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// indirect dependencies here.
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[coordinationScopes, coordinationScopesBy]);
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const [indicesData, indicesDataStatus] = useObsSetsMultiLevel(loaders, dataset, false, matchOnObj, 2);
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return [indicesData, indicesDataStatus];
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const [indicesData, indicesDataStatus, indicesDataErrors] = useObsSetsMultiLevel(loaders, dataset, false, matchOnObj, 2);
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return [indicesData, indicesDataStatus, indicesDataErrors];
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}
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package/dist-tsc/data-hooks.d.ts
CHANGED
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* @param {object} initialCoordinationValues Object where
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* keys are coordination type names with the prefix 'initialize',
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* values are initialization preferences as boolean values.
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* @returns {array} [
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* cells is an object and cellsCount is the
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* number of items in the cells object.
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* @returns {array} [data, status, urls, error]
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*/
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export function useObsEmbeddingData(loaders: object, dataset: string, isRequired: boolean, coordinationSetters: object, initialCoordinationValues: object, matchOn: any): array;
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export function
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* Wrapper around useDataType.
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* @param {string} dataset
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*/
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export function useObsSpotsData(loaders: object, dataset: string, isRequired: boolean, coordinationSetters: object, initialCoordinationValues: object, matchOn: object): array;
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/**
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* Wrapper around useDataType.
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* @param {object} loaders
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* @returns {array} [data, status, urls, error]
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*/
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export function useObsPointsData(loaders: object, dataset: string, isRequired: boolean, coordinationSetters: object, initialCoordinationValues: object, matchOn: object): array;
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/**
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* Wrapper around useDataType.
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*/
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export function useObsLocationsData(loaders: object, dataset: string, isRequired: boolean, coordinationSetters: object, initialCoordinationValues: object, matchOn: object): array;
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/**
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*/
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export function useObsLabelsData(loaders: object, dataset: string, isRequired: boolean, coordinationSetters: object, initialCoordinationValues: object, matchOn: object): array;
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*/
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export function useObsSegmentationsData(loaders: object, dataset: string, isRequired: boolean, coordinationSetters: object, initialCoordinationValues: object, matchOn: object): array;
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/**
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* Wrapper around useDataType.
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*/
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export function useObsSetsData(loaders: object, dataset: string, isRequired: boolean, coordinationSetters: object, initialCoordinationValues: object, matchOn: object): array;
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/**
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*/
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export function useSampleSetsData(loaders: object, dataset: string, isRequired: boolean, coordinationSetters: object, initialCoordinationValues: object, matchOn: object): array;
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/**
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* @returns {array} [data, status, urls, error]
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*/
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export function useSampleEdgesData(loaders: object, dataset: string, isRequired: boolean, coordinationSetters: object, initialCoordinationValues: object, matchOn: object): array;
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/**
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* @returns {array} [data, status, urls, error]
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|
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export function useObsFeatureMatrixIndices(loaders: object, dataset: string, isRequired: boolean, matchOn: object): object;
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+
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|
+
export function useMultiObsPoints(coordinationScopes: object, coordinationScopesBy: object, loaders: object, dataset: string, mergeCoordination: Function, viewUid: string): array;
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|
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+
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+
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288
|
+
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289
|
+
*/
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|
290
|
+
export function useMultiObsSpots(coordinationScopes: object, coordinationScopesBy: object, loaders: object, dataset: string, mergeCoordination: Function, viewUid: string): array;
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291
|
+
/**
|
|
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|
+
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|
+
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299
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+
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|
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300
|
+
*/
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301
|
+
export function useSpotMultiObsSets(coordinationScopes: object, coordinationScopesBy: object, loaders: object, dataset: string): array;
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|
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/**
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|
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|
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*/
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312
|
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export function useSpotMultiFeatureLabels(coordinationScopes: object, coordinationScopesBy: object, loaders: object, dataset: string): array;
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|
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/**
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|
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+
* @returns {array} [labelsTypes, data, status, urls, errors]
|
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|
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*/
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|
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export function useMultiObsLabels(coordinationScopes: object, obsType: any, loaders: object, dataset: string): array;
|
|
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|
+
/**
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|
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|
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* Wrapper around useDataTypeMulti.
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|
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|
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*/
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|
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|
+
export function useMultiObsSegmentations(coordinationScopes: object, coordinationScopesBy: object, loaders: object, dataset: string, mergeCoordination: Function, viewUid: string): array;
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|
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|
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/**
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* Wrapper around useDataTypeMulti.
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* @returns {array} [data, status, urls, errors]
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*/
|
|
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|
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export function useMultiImages(coordinationScopes: object, coordinationScopesBy: object, loaders: object, dataset: string, mergeCoordination: Function, viewUid: string): array;
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{"version":3,"file":"data-hooks.d.ts","sourceRoot":"","sources":["../src/data-hooks.js"],"names":[],"mappings":"
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