@vitessce/vit-s 3.6.3 → 3.6.5

package/dist/index.js

@@ -30564,6 +30564,7 @@ const FileType$1 = {
   ANNDATA_ZARR_ZIP: "anndata.zarr.zip",
   ANNDATA_H5AD: "anndata.h5ad",
   SPATIALDATA_ZARR: "spatialdata.zarr",
+  SPATIALDATA_ZARR_ZIP: "spatialdata.zarr.zip",
   // Atomic file types
   OBS_EMBEDDING_CSV: "obsEmbedding.csv",
   OBS_SPOTS_CSV: "obsSpots.csv",
@@ -30644,6 +30645,14 @@ const FileType$1 = {
   // TODO:
   // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
   // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
+  // SpatialData - zipped
+  IMAGE_SPATIALDATA_ZARR_ZIP: "image.spatialdata.zarr.zip",
+  LABELS_SPATIALDATA_ZARR_ZIP: "labels.spatialdata.zarr.zip",
+  SHAPES_SPATIALDATA_ZARR_ZIP: "shapes.spatialdata.zarr.zip",
+  OBS_FEATURE_MATRIX_SPATIALDATA_ZARR_ZIP: "obsFeatureMatrix.spatialdata.zarr.zip",
+  OBS_SETS_SPATIALDATA_ZARR_ZIP: "obsSets.spatialdata.zarr.zip",
+  OBS_SPOTS_SPATIALDATA_ZARR_ZIP: "obsSpots.spatialdata.zarr.zip",
+  FEATURE_LABELS_SPATIALDATA_ZARR_ZIP: "featureLabels.spatialdata.zarr.zip",
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
@@ -31046,6 +31055,28 @@ const DATA_TYPE_COORDINATION_VALUE_USAGE = {
   },
   [FileType$1.OBS_SEGMENTATIONS_OME_ZARR]: {
     zip: FileType$1.OBS_SEGMENTATIONS_OME_ZARR_ZIP
+  },
+  // For SpatialData:
+  [FileType$1.IMAGE_SPATIALDATA_ZARR]: {
+    zip: FileType$1.IMAGE_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.LABELS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.LABELS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.SHAPES_SPATIALDATA_ZARR]: {
+    zip: FileType$1.SHAPES_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_SETS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_SETS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_SPOTS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_SPOTS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR_ZIP
   }
 });
 const AUTO_INDEPENDENT_COORDINATION_TYPES = [
@@ -31720,7 +31751,7 @@ const AUTO_INDEPENDENT_COORDINATION_TYPES = [
     CoordinationType$1.HIERARCHY_LEVELS
   ]
 });
-const version = "3.6.3";
+const version = "3.6.5";
 const META_VERSION = {
   version
 };
@@ -32241,6 +32272,7 @@ const anndataZarrSchema = z.object({
     z.array(annDataConvenienceFeatureLabelsItem)
   ]),
   obsFeatureMatrix: annDataObsFeatureMatrix,
+  obsFeatureColumns: annDataObsFeatureColumnsArr,
   obsSets: annDataObsSetsArr,
   obsSpots: annDataObsSpots,
   obsPoints: annDataObsPoints,
@@ -32258,12 +32290,17 @@ anndataZarrSchema.extend({
 z.object({
   // TODO: should `image` be a special schema
   // to allow specifying fileUid (like for embeddingType)?
-  // TODO: allow multiple images
+  // TODO: allow multiple images?
   image: imageSpatialdataSchema,
   // TODO: should this be a special schema
   // to allow specifying fileUid (like for embeddingType)?
-  // TODO: allow multiple labels
+  // TODO: allow multiple labels?
   labels: obsSegmentationsSpatialdataSchema,
+  // TODO: allow multiple shapes?
+  // TODO: unify labels and shapes to obsSegmentations,
+  // then distinguish in expand function based on
+  // "labels/*" vs. "shapes/*" in path?
+  shapes: obsSegmentationsSpatialdataSchema,
   obsFeatureMatrix: obsFeatureMatrixSpatialdataSchema,
   obsSpots: obsSpotsSpatialdataSchema,
   // TODO: obsPoints

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/vit-s",
-  "version": "3.6.3",
+  "version": "3.6.5",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -28,15 +28,15 @@
     "zustand": "^5.0.4",
     "react-aria": "^3.28.0",
     "react-error-boundary": "^5.0.0",
-    "@vitessce/styles": "3.6.3",
-    "@vitessce/abstract": "3.6.3",
-    "@vitessce/constants-internal": "3.6.3",
-    "@vitessce/plugins": "3.6.3",
-    "@vitessce/schemas": "3.6.3",
-    "@vitessce/utils": "3.6.3",
-    "@vitessce/sets-utils": "3.6.3",
-    "@vitessce/config": "3.6.3",
-    "@vitessce/globals": "3.6.3"
+    "@vitessce/styles": "3.6.5",
+    "@vitessce/abstract": "3.6.5",
+    "@vitessce/constants-internal": "3.6.5",
+    "@vitessce/plugins": "3.6.5",
+    "@vitessce/schemas": "3.6.5",
+    "@vitessce/utils": "3.6.5",
+    "@vitessce/sets-utils": "3.6.5",
+    "@vitessce/config": "3.6.5",
+    "@vitessce/globals": "3.6.5"
   },
   "devDependencies": {
     "@testing-library/jest-dom": "^6.6.3",
@@ -45,7 +45,7 @@
     "react-dom": "^18.0.0",
     "vite": "^6.3.5",
     "vitest": "^3.1.4",
-    "@vitessce/types": "3.6.3"
+    "@vitessce/types": "3.6.5"
   },
   "peerDependencies": {
     "react": "^16.8.0 || ^17.0.0 || ^18.0.0 || ^19.0.0"