@vitessce/vit-s 3.6.13 → 3.6.15

package/dist/index.js

@@ -31126,6 +31126,7 @@ const FileType$1 = {
   OBS_SPOTS_SPATIALDATA_ZARR: "obsSpots.spatialdata.zarr",
   FEATURE_LABELS_SPATIALDATA_ZARR: "featureLabels.spatialdata.zarr",
   OBS_POINTS_SPATIALDATA_ZARR: "obsPoints.spatialdata.zarr",
+  OBS_EMBEDDING_SPATIALDATA_ZARR: "obsEmbedding.spatialdata.zarr",
   // SpatialData - zipped
   IMAGE_SPATIALDATA_ZARR_ZIP: "image.spatialdata.zarr.zip",
   LABELS_SPATIALDATA_ZARR_ZIP: "labels.spatialdata.zarr.zip",
@@ -31135,6 +31136,7 @@ const FileType$1 = {
   OBS_SPOTS_SPATIALDATA_ZARR_ZIP: "obsSpots.spatialdata.zarr.zip",
   FEATURE_LABELS_SPATIALDATA_ZARR_ZIP: "featureLabels.spatialdata.zarr.zip",
   OBS_POINTS_SPATIALDATA_ZARR_ZIP: "obsPoints.spatialdata.zarr.zip",
+  OBS_EMBEDDING_SPATIALDATA_ZARR_ZIP: "obsEmbedding.spatialdata.zarr.zip",
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
@@ -31387,6 +31389,7 @@ const STATUS = {
   [FileType$1.OBS_SETS_SPATIALDATA_ZARR]: DataType$1.OBS_SETS,
   [FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR]: DataType$1.FEATURE_LABELS,
   [FileType$1.OBS_POINTS_SPATIALDATA_ZARR]: DataType$1.OBS_POINTS,
+  [FileType$1.OBS_EMBEDDING_SPATIALDATA_ZARR]: DataType$1.OBS_EMBEDDING,
   // For new file types to support old file types
   [FileType$1.OBS_EMBEDDING_CELLS_JSON]: DataType$1.OBS_EMBEDDING,
   [FileType$1.OBS_LOCATIONS_CELLS_JSON]: DataType$1.OBS_LOCATIONS,
@@ -31563,6 +31566,9 @@ const DATA_TYPE_COORDINATION_VALUE_USAGE = {
   },
   [FileType$1.OBS_POINTS_SPATIALDATA_ZARR]: {
     zip: FileType$1.OBS_POINTS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_EMBEDDING_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_EMBEDDING_SPATIALDATA_ZARR_ZIP
   }
 });
 const AUTO_INDEPENDENT_COORDINATION_TYPES = [
@@ -32237,7 +32243,7 @@ const AUTO_INDEPENDENT_COORDINATION_TYPES = [
     CoordinationType$1.HIERARCHY_LEVELS
   ]
 });
-const version = "3.6.13";
+const version = "3.6.15";
 const META_VERSION = {
   version
 };
@@ -32685,6 +32691,16 @@ const obsSetsSpatialdataSchema = z.object({
   tablePath: z.string().optional().describe("The path to a table which contains the index for the set values."),
   obsSets: annDataObsSetsArr
 });
+annDataObsEmbedding.extend({
+  // We extend anndataObsEmbedding which already has properties like `dims` and `path`.
+  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional(),
+  tablePath: z.string().optional().describe("The path to a table which contains the index for the set values.")
+});
+const obsEmbeddingSpatialdataSchemaConvenience = z.union([
+  annDataObsEmbedding,
+  // For convenience, allow an array of items with `embeddingType` properties.
+  z.array(annDataConvenienceObsEmbeddingItem)
+]);
 z.object({
   targetX: z.number(),
   targetY: z.number(),
@@ -32793,9 +32809,10 @@ z.object({
   // TODO: obsPoints
   // TODO: obsLocations
   obsSets: obsSetsSpatialdataSchema,
-  // TODO: obsEmbedding
+  obsEmbedding: obsEmbeddingSpatialdataSchemaConvenience,
   // TODO: obsLabels
   // TODO: featureLabels
+  // TODO: allow specifying tablePath and region at the top-level here.
   coordinateSystem: z.string().optional().describe("The name of a coordinate transformation output used to transform all elements which lack a per-element coordinateSystem property.")
 }).partial();
 z.object({

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/vit-s",
-  "version": "3.6.13",
+  "version": "3.6.15",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -28,16 +28,16 @@
     "zustand": "^5.0.4",
     "react-aria": "^3.28.0",
     "react-error-boundary": "^5.0.0",
-    "@vitessce/styles": "3.6.13",
-    "@vitessce/abstract": "3.6.13",
-    "@vitessce/error": "3.6.13",
-    "@vitessce/constants-internal": "3.6.13",
-    "@vitessce/plugins": "3.6.13",
-    "@vitessce/schemas": "3.6.13",
-    "@vitessce/utils": "3.6.13",
-    "@vitessce/sets-utils": "3.6.13",
-    "@vitessce/config": "3.6.13",
-    "@vitessce/globals": "3.6.13"
+    "@vitessce/styles": "3.6.15",
+    "@vitessce/abstract": "3.6.15",
+    "@vitessce/error": "3.6.15",
+    "@vitessce/constants-internal": "3.6.15",
+    "@vitessce/plugins": "3.6.15",
+    "@vitessce/schemas": "3.6.15",
+    "@vitessce/utils": "3.6.15",
+    "@vitessce/sets-utils": "3.6.15",
+    "@vitessce/config": "3.6.15",
+    "@vitessce/globals": "3.6.15"
   },
   "devDependencies": {
     "@testing-library/jest-dom": "^6.6.3",
@@ -46,7 +46,7 @@
     "react-dom": "^18.0.0",
     "vite": "^6.3.5",
     "vitest": "^3.1.4",
-    "@vitessce/types": "3.6.13"
+    "@vitessce/types": "3.6.15"
   },
   "peerDependencies": {
     "react": "^16.8.0 || ^17.0.0 || ^18.0.0 || ^19.0.0"