@vitessce/vit-s 3.0.0 → 3.1.0

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Files changed (105) hide show
  1. package/dist/index.js +28430 -25685
  2. package/dist-tsc/VitS.d.ts +7 -2
  3. package/dist-tsc/VitS.d.ts.map +1 -1
  4. package/dist-tsc/VitS.js +43 -23
  5. package/dist-tsc/VitessceGrid.d.ts.map +1 -1
  6. package/dist-tsc/VitessceGrid.js +14 -11
  7. package/dist-tsc/VitessceGrid.test.js +5 -2
  8. package/dist-tsc/Warning.js +2 -2
  9. package/dist-tsc/data/LoaderResult.d.ts +8 -3
  10. package/dist-tsc/data/LoaderResult.d.ts.map +1 -1
  11. package/dist-tsc/data/LoaderResult.js +5 -0
  12. package/dist-tsc/data-hook-utils.d.ts +3 -7
  13. package/dist-tsc/data-hook-utils.d.ts.map +1 -1
  14. package/dist-tsc/data-hook-utils.js +97 -79
  15. package/dist-tsc/data-hooks.d.ts +12 -16
  16. package/dist-tsc/data-hooks.d.ts.map +1 -1
  17. package/dist-tsc/data-hooks.js +140 -127
  18. package/dist-tsc/errors/DataSourceFetchError.js +1 -1
  19. package/dist-tsc/hooks.d.ts +3 -7
  20. package/dist-tsc/hooks.d.ts.map +1 -1
  21. package/dist-tsc/hooks.js +12 -18
  22. package/dist-tsc/index.d.ts +2 -1
  23. package/dist-tsc/index.js +2 -1
  24. package/dist-tsc/mui-utils.d.ts +2 -0
  25. package/dist-tsc/mui-utils.d.ts.map +1 -0
  26. package/dist-tsc/mui-utils.js +44 -0
  27. package/dist-tsc/shared-plot-options/OptionSelect.js +1 -1
  28. package/dist-tsc/shared-plot-options/styles.js +1 -1
  29. package/dist-tsc/state/hooks.d.ts +27 -1
  30. package/dist-tsc/state/hooks.d.ts.map +1 -1
  31. package/dist-tsc/state/hooks.js +61 -21
  32. package/dist-tsc/view-config-utils.d.ts +1 -0
  33. package/dist-tsc/view-config-utils.d.ts.map +1 -1
  34. package/dist-tsc/view-config-utils.js +7 -1
  35. package/dist-tsc/view-config-utils.test.js +1 -0
  36. package/dist-tsc/vitessce-grid-layout/VitessceGridLayout.test.js +1 -1
  37. package/dist-tsc/vitessce-grid-layout/layout-utils.test.js +1 -0
  38. package/package.json +10 -9
  39. package/src/VitS.js +79 -43
  40. package/src/VitessceGrid.js +16 -10
  41. package/src/VitessceGrid.test.jsx +8 -2
  42. package/src/Warning.js +2 -2
  43. package/src/data/LoaderResult.js +5 -0
  44. package/src/data-hook-utils.js +116 -81
  45. package/src/data-hooks.js +148 -129
  46. package/src/errors/DataSourceFetchError.js +1 -1
  47. package/src/hooks.js +14 -21
  48. package/src/index.js +2 -0
  49. package/src/mui-utils.js +52 -0
  50. package/src/shared-plot-options/OptionSelect.js +1 -1
  51. package/src/shared-plot-options/styles.js +1 -1
  52. package/src/state/hooks.js +66 -21
  53. package/src/view-config-utils.js +8 -0
  54. package/src/view-config-utils.test.jsx +1 -0
  55. package/src/vitessce-grid-layout/VitessceGridLayout.test.jsx +1 -1
  56. package/src/vitessce-grid-layout/layout-utils.test.js +1 -0
  57. package/dist-tsc/schemas/config-0.1.0.schema.json +0 -84
  58. package/dist-tsc/schemas/config-1.0.0.schema.json +0 -733
  59. package/dist-tsc/schemas/config-1.0.1.schema.json +0 -909
  60. package/dist-tsc/schemas/config-1.0.10.schema.json +0 -969
  61. package/dist-tsc/schemas/config-1.0.11.schema.json +0 -990
  62. package/dist-tsc/schemas/config-1.0.12.schema.json +0 -997
  63. package/dist-tsc/schemas/config-1.0.13.schema.json +0 -1013
  64. package/dist-tsc/schemas/config-1.0.14.schema.json +0 -1048
  65. package/dist-tsc/schemas/config-1.0.15.schema.json +0 -1048
  66. package/dist-tsc/schemas/config-1.0.16.schema.json +0 -1089
  67. package/dist-tsc/schemas/config-1.0.2.schema.json +0 -910
  68. package/dist-tsc/schemas/config-1.0.3.schema.json +0 -910
  69. package/dist-tsc/schemas/config-1.0.4.schema.json +0 -949
  70. package/dist-tsc/schemas/config-1.0.5.schema.json +0 -949
  71. package/dist-tsc/schemas/config-1.0.6.schema.json +0 -949
  72. package/dist-tsc/schemas/config-1.0.7.schema.json +0 -949
  73. package/dist-tsc/schemas/config-1.0.8.schema.json +0 -965
  74. package/dist-tsc/schemas/config-1.0.9.schema.json +0 -965
  75. package/dist-tsc/schemas/obsSets.schema.d.ts +0 -179
  76. package/dist-tsc/schemas/obsSets.schema.d.ts.map +0 -1
  77. package/dist-tsc/schemas/obsSets.schema.js +0 -195
  78. package/dist-tsc/schemas/obsSetsTabular.schema.d.ts +0 -57
  79. package/dist-tsc/schemas/obsSetsTabular.schema.d.ts.map +0 -1
  80. package/dist-tsc/schemas/obsSetsTabular.schema.js +0 -38
  81. package/dist-tsc/schemas/raster.schema.d.ts +0 -239
  82. package/dist-tsc/schemas/raster.schema.d.ts.map +0 -1
  83. package/dist-tsc/schemas/raster.schema.js +0 -120
  84. package/src/schemas/config-0.1.0.schema.json +0 -85
  85. package/src/schemas/config-1.0.0.schema.json +0 -733
  86. package/src/schemas/config-1.0.1.schema.json +0 -909
  87. package/src/schemas/config-1.0.10.schema.json +0 -969
  88. package/src/schemas/config-1.0.11.schema.json +0 -990
  89. package/src/schemas/config-1.0.12.schema.json +0 -997
  90. package/src/schemas/config-1.0.13.schema.json +0 -1013
  91. package/src/schemas/config-1.0.14.schema.json +0 -1048
  92. package/src/schemas/config-1.0.15.schema.json +0 -1048
  93. package/src/schemas/config-1.0.16.schema.json +0 -1089
  94. package/src/schemas/config-1.0.2.schema.json +0 -911
  95. package/src/schemas/config-1.0.3.schema.json +0 -911
  96. package/src/schemas/config-1.0.4.schema.json +0 -949
  97. package/src/schemas/config-1.0.5.schema.json +0 -949
  98. package/src/schemas/config-1.0.6.schema.json +0 -950
  99. package/src/schemas/config-1.0.7.schema.json +0 -950
  100. package/src/schemas/config-1.0.8.schema.json +0 -966
  101. package/src/schemas/config-1.0.9.schema.json +0 -965
  102. package/src/schemas/obsSets.schema.js +0 -195
  103. package/src/schemas/obsSetsTabular.schema.js +0 -39
  104. package/src/schemas/raster.schema.js +0 -121
  105. package/src/schemas/schema-schema.sh +0 -34
@@ -1,179 +0,0 @@
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- export default schema;
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- declare namespace schema {
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- const $schema: string;
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- const $id: string;
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- const title: string;
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- const type: string;
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- const definitions: {
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- stringArray: {
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- type: string;
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- items: {
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- type: string;
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- };
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- };
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- stringProbabilityTupleArray: {
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- type: string;
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- items: {
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- type: string;
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- additionalItems: boolean;
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- items: ({
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- type: string;
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- oneOf?: undefined;
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- } | {
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- oneOf: ({
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- type: string;
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- minimum: number;
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- maximum: number;
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- } | {
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- type: string;
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- minimum?: undefined;
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- maximum?: undefined;
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- })[];
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- type?: undefined;
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- })[];
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- };
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- };
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- colorArray: {
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- type: string;
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- items: {
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- type: string;
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- minimum: number;
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- maximum: number;
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- };
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- minItems: number;
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- maxItems: number;
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- };
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- treeNodeLeaf: {
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- type: string;
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- additionalProperties: boolean;
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- required: string[];
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- properties: {
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- name: {
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- type: string;
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- };
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- color: {
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- $ref: string;
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- };
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- set: {
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- $ref: string;
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- };
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- };
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- };
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- treeNodeNonLeaf: {
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- type: string;
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- additionalProperties: boolean;
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- required: string[];
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- properties: {
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- name: {
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- type: string;
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- };
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- color: {
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- $ref: string;
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- };
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- children: {
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- type: string;
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- items: {
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- $ref: string;
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- };
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- };
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- };
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- };
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- treeNode: {
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- oneOf: {
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- $ref: string;
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- }[];
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- };
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- 'version0.1.2': {
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- type: string;
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- additionalProperties: boolean;
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- required: string[];
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- properties: {
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- dataset: {
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- type: string;
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- };
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- version: {
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- type: string;
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- enum: string[];
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- };
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- datatype: {
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- type: string;
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- enum: string[];
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- };
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- tree: {
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- type: string;
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- items: {
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- $ref: string;
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- };
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- };
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- };
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- };
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- treeNodeLeafProbabilistic: {
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- type: string;
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- additionalProperties: boolean;
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- required: string[];
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- properties: {
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- name: {
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- type: string;
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- };
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- color: {
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- $ref: string;
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- };
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- set: {
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- $ref: string;
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- };
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- };
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- };
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- treeNodeNonLeafProbabilistic: {
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- type: string;
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- additionalProperties: boolean;
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- required: string[];
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- properties: {
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- name: {
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- type: string;
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- };
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- color: {
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- $ref: string;
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- };
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- children: {
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- type: string;
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- items: {
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- $ref: string;
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- };
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- };
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- };
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- };
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- treeNodeProbabilistic: {
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- oneOf: {
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- $ref: string;
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- }[];
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- };
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- 'version0.1.3': {
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- type: string;
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- additionalProperties: boolean;
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- required: string[];
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- properties: {
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- dataset: {
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- type: string;
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- };
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- version: {
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- type: string;
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- enum: string[];
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- };
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- datatype: {
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- type: string;
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- enum: string[];
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- };
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- tree: {
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- type: string;
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- items: {
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- $ref: string;
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- };
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- };
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- };
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- };
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- };
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- const oneOf: {
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- $ref: string;
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- }[];
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- }
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- //# sourceMappingURL=obsSets.schema.d.ts.map
@@ -1 +0,0 @@
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- {"version":3,"file":"obsSets.schema.d.ts","sourceRoot":"","sources":["../../src/schemas/obsSets.schema.js"],"names":[],"mappings":""}
@@ -1,195 +0,0 @@
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- const schema = {
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- $schema: 'http://json-schema.org/draft-07/schema#',
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- $id: 'https://github.com/vitessce/vitessce/#cell-sets',
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- title: 'Vitessce obs sets data',
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- type: 'object',
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- definitions: {
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- stringArray: {
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- type: 'array',
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- items: {
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- type: 'string',
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- },
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- },
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- stringProbabilityTupleArray: {
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- type: 'array',
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- items: {
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- type: 'array',
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- additionalItems: false,
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- items: [
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- {
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- type: 'string',
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- },
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- {
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- oneOf: [
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- {
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- type: 'number',
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- minimum: 0.0,
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- maximum: 1.0,
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- },
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- {
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- type: 'null',
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- },
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- ],
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- },
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- ],
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- },
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- },
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- colorArray: {
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- type: 'array',
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- items: {
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- type: 'integer',
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- minimum: 0,
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- maximum: 255,
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- },
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- minItems: 3,
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- maxItems: 3,
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- },
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- treeNodeLeaf: {
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- type: 'object',
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- additionalProperties: false,
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- required: ['name'],
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- properties: {
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- name: {
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- type: 'string',
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- },
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- color: {
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- $ref: '#/definitions/colorArray',
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- },
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- set: {
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- $ref: '#/definitions/stringArray',
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- },
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- },
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- },
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- treeNodeNonLeaf: {
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- type: 'object',
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- additionalProperties: false,
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- required: ['name'],
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- properties: {
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- name: {
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- type: 'string',
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- },
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- color: {
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- $ref: '#/definitions/colorArray',
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- },
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- children: {
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- type: 'array',
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- items: {
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- $ref: '#/definitions/treeNode',
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- },
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- },
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- },
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- },
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- treeNode: {
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- oneOf: [
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- {
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- $ref: '#/definitions/treeNodeNonLeaf',
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- },
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- {
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- $ref: '#/definitions/treeNodeLeaf',
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- },
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- ],
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- },
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- 'version0.1.2': {
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- type: 'object',
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- additionalProperties: false,
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- required: ['version', 'datatype', 'tree'],
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- properties: {
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- dataset: {
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- type: 'string',
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- },
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- version: {
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- type: 'string',
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- enum: ['0.1.2'],
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- },
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- datatype: {
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- type: 'string',
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- enum: ['cell', 'obs'],
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- },
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- tree: {
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- type: 'array',
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- items: {
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- $ref: '#/definitions/treeNodeNonLeaf',
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- },
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- },
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- },
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- },
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- treeNodeLeafProbabilistic: {
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- type: 'object',
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- additionalProperties: false,
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- required: ['name'],
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- properties: {
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- name: {
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- type: 'string',
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- },
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- color: {
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- $ref: '#/definitions/colorArray',
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- },
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- set: {
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- $ref: '#/definitions/stringProbabilityTupleArray',
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- },
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- },
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- },
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- treeNodeNonLeafProbabilistic: {
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- type: 'object',
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- additionalProperties: false,
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- required: ['name'],
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- properties: {
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- name: {
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- type: 'string',
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- },
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- color: {
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- $ref: '#/definitions/colorArray',
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- },
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- children: {
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- type: 'array',
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- items: {
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- $ref: '#/definitions/treeNodeProbabilistic',
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- },
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- },
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- },
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- },
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- treeNodeProbabilistic: {
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- oneOf: [
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- {
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- $ref: '#/definitions/treeNodeNonLeafProbabilistic',
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- },
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- {
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- $ref: '#/definitions/treeNodeLeafProbabilistic',
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- },
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- ],
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- },
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- 'version0.1.3': {
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- type: 'object',
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- additionalProperties: false,
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- required: ['version', 'datatype', 'tree'],
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- properties: {
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- dataset: {
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- type: 'string',
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- },
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- version: {
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- type: 'string',
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- enum: ['0.1.3'],
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- },
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- datatype: {
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- type: 'string',
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- enum: ['cell', 'obs'],
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- },
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- tree: {
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- type: 'array',
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- items: {
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- $ref: '#/definitions/treeNodeNonLeafProbabilistic',
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- },
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- },
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- },
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- },
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- },
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- oneOf: [
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- {
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- $ref: '#/definitions/version0.1.2',
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- },
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- {
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- $ref: '#/definitions/version0.1.3',
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- },
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- ],
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- };
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- export default schema;
@@ -1,57 +0,0 @@
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- export default schema;
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- declare namespace schema {
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- export const $schema: string;
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- export const $id: string;
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- export const title: string;
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- export namespace definitions {
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- namespace colorArray {
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- const type: string;
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- namespace items {
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- const type_1: string;
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- export { type_1 as type };
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- export const minimum: number;
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- export const maximum: number;
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- }
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- const minItems: number;
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- const maxItems: number;
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- }
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- }
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- const type_2: string;
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- export { type_2 as type };
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- export namespace items_1 {
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- const type_3: string;
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- export { type_3 as type };
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- export const additionalProperties: boolean;
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- export const required: string[];
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- export namespace properties {
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- namespace groupName {
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- const type_4: string;
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- export { type_4 as type };
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- }
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- namespace setName {
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- const type_5: string;
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- export { type_5 as type };
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- }
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- namespace setColor {
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- const $ref: string;
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- }
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- namespace obsId {
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- const type_6: string;
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- export { type_6 as type };
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- }
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- namespace predictionScore {
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- const oneOf: ({
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- type: string;
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- minimum: number;
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- maximum: number;
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- } | {
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- type: string;
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- minimum?: undefined;
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- maximum?: undefined;
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- })[];
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- }
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- }
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- }
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- export { items_1 as items };
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- }
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- //# sourceMappingURL=obsSetsTabular.schema.d.ts.map
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- {"version":3,"file":"obsSetsTabular.schema.d.ts","sourceRoot":"","sources":["../../src/schemas/obsSetsTabular.schema.js"],"names":[],"mappings":""}
@@ -1,38 +0,0 @@
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- const schema = {
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- $schema: 'http://json-schema.org/draft-07/schema#',
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- $id: 'https://github.com/vitessce/vitessce/#obsSetsTabular',
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- title: 'Vitessce obs sets data, tabular format',
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- definitions: {
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- colorArray: {
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- type: 'array',
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- items: { type: 'integer', minimum: 0, maximum: 255 },
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- minItems: 3,
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- maxItems: 3,
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- },
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- },
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- type: 'array',
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- items: {
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- type: 'object',
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- additionalProperties: false,
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- required: ['groupName', 'setName', 'obsId'],
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- properties: {
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- groupName: { type: 'string' },
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- setName: { type: 'string' },
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- setColor: { $ref: '#/definitions/colorArray' },
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- obsId: { type: 'string' },
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- predictionScore: {
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- oneOf: [
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- {
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- type: 'number',
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- minimum: 0.0,
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- maximum: 1.0,
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- },
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- {
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- type: 'null',
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- },
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- ],
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- },
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- },
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- },
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- };
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- export default schema;