@vitessce/vit-s 2.0.3 → 3.0.1

package/dist-tsc/view-config-utils.d.ts

@@ -0,0 +1,31 @@
+export function logConfig(config: any, name: any): void;
+/**
+ * Get a list of all unique scope names for a
+ * particular coordination type, which exist in
+ * a particular view config.
+ * @param {object} config A view config object.
+ * @param {string} coordinationType A coordination type,
+ * for example 'spatialZoom' or 'dataset'.
+ * @returns {string[]} Array of existing coordination scope names.
+ */
+export function getExistingScopesForCoordinationType(config: object, coordinationType: string): string[];
+/**
+ * Initialize the view config:
+ * - Fill in missing coordination objects with default values.
+ * - Fill in missing component coordination scope mappings.
+ *   based on the `initStrategy` specified in the view config.
+ * - Fill in missing view uid values.
+ * - Expand convenience file types.
+ * Should be "stable": if run on the same view config twice, the return value the second
+ * time should be identical to the return value the first time.
+ * @param {object} config The view config prop.
+ * @param {PluginJointFileType[]} jointFileTypes
+ * @param {PluginCoordinationType[]} coordinationTypes
+ * @param {PluginViewType[]} viewTypes
+ * @returns The initialized view config.
+ */
+export function initialize(config: object, jointFileTypes: PluginJointFileType[], coordinationTypes: PluginCoordinationType[], viewTypes: PluginViewType[]): {
+    uid: any;
+    layout: any;
+};
+//# sourceMappingURL=view-config-utils.d.ts.map

package/dist-tsc/view-config-utils.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"view-config-utils.d.ts","sourceRoot":"","sources":["../src/view-config-utils.js"],"names":[],"mappings":"AASA,wDAKC;AAED;;;;;;;;GAQG;AACH,6DALW,MAAM,oBACN,MAAM,GAEJ,MAAM,EAAE,CAMpB;AAyND;;;;;;;;;;;;;;GAcG;AACH,mCANW,MAAM,kBACN,qBAAqB,qBACrB,wBAAwB,aACxB,gBAAgB;;;EAY1B"}

package/dist-tsc/view-config-utils.js

@@ -0,0 +1,240 @@
+/* eslint-disable no-plusplus */
+/* eslint-disable camelcase */
+import { cloneDeep } from 'lodash-es';
+import { fromEntries, getNextScope } from '@vitessce/utils';
+import { AUTO_INDEPENDENT_COORDINATION_TYPES, META_VERSION, } from '@vitessce/constants-internal';
+export function logConfig(config, name) {
+    console.groupCollapsed(`🚄 VitS (${META_VERSION.version}) ${name}`);
+    console.info(`data:,${JSON.stringify(config)}`);
+    console.info(JSON.stringify(config, null, 2));
+    console.groupEnd();
+}
+/**
+ * Get a list of all unique scope names for a
+ * particular coordination type, which exist in
+ * a particular view config.
+ * @param {object} config A view config object.
+ * @param {string} coordinationType A coordination type,
+ * for example 'spatialZoom' or 'dataset'.
+ * @returns {string[]} Array of existing coordination scope names.
+ */
+export function getExistingScopesForCoordinationType(config, coordinationType) {
+    const spaceScopes = Object.keys(config?.coordinationSpace?.[coordinationType] || {});
+    const componentScopes = config.layout.map(c => c.coordinationScopes?.[coordinationType]);
+    return Array.from(new Set([...spaceScopes, ...componentScopes]));
+}
+/**
+ * Give each component the same scope name for this coordination type.
+ * @param {object} config A view config object.
+ * @param {string} coordinationType A coordination type,
+ * for example 'spatialZoom' or 'dataset'.
+ * @param {*} scopeValue The initial value for the coordination scope,
+ * to set in the coordination space.
+ * @returns {object} The new view config.
+ */
+function coordinateComponentsTogether(config, coordinationType, scopeValue, viewTypes) {
+    const componentCoordinationTypes = fromEntries(viewTypes.map(vt => ([vt.name, vt.coordinationTypes])));
+    const scopeName = getNextScope(getExistingScopesForCoordinationType(config, coordinationType));
+    const newConfig = {
+        ...config,
+        coordinationSpace: {
+            ...config.coordinationSpace,
+            [coordinationType]: {
+                ...config?.coordinationSpace?.[coordinationType],
+                // Add the new scope name and value to the coordination space.
+                [scopeName]: scopeValue,
+            },
+        },
+        layout: config.layout.map(component => ({
+            ...component,
+            coordinationScopes: {
+                ...component.coordinationScopes,
+                // Only set the coordination scope if this component uses this coordination type,
+                // and the component is missing a coordination scope for this coordination type.
+                ...((componentCoordinationTypes[component.component].includes(coordinationType)
+                    && !component.coordinationScopes?.[coordinationType]) ? {
+                    // Only set the new scope name if the scope name
+                    // for this component and coordination type is currently undefined.
+                    [coordinationType]: scopeName,
+                } : {}),
+            },
+        })),
+    };
+    return newConfig;
+}
+/**
+ * Give each component a different scope name for this coordination type.
+ * @param {object} config A view config object.
+ * @param {string} coordinationType A coordination type,
+ * for example 'spatialZoom' or 'dataset'.
+ * @param {*} scopeValue The initial value for the coordination scope,
+ * to set in the coordination space.
+ * @returns {object} The new view config.
+ */
+function coordinateComponentsIndependent(config, coordinationType, scopeValue, viewTypes) {
+    const componentCoordinationTypes = fromEntries(viewTypes.map(vt => ([vt.name, vt.coordinationTypes])));
+    const newConfig = {
+        ...config,
+        layout: [...config.layout],
+    };
+    const newScopes = {};
+    newConfig.layout.forEach((component, i) => {
+        // Only set the coordination scope if this component uses this coordination type,
+        // and the component is missing a coordination scope for this coordination type.
+        if (componentCoordinationTypes[component.component].includes(coordinationType)
+            && !component.coordinationScopes?.[coordinationType]) {
+            const scopeName = getNextScope([
+                ...getExistingScopesForCoordinationType(config, coordinationType),
+                ...Object.keys(newScopes),
+            ]);
+            newScopes[scopeName] = scopeValue;
+            newConfig.layout[i] = {
+                ...component,
+                coordinationScopes: {
+                    ...component.coordinationScopes,
+                    [coordinationType]: scopeName,
+                },
+            };
+        }
+    });
+    newConfig.coordinationSpace = {
+        ...newConfig.coordinationSpace,
+        [coordinationType]: {
+            ...newConfig.coordinationSpace[coordinationType],
+            // Add the new scope name and value to the coordination space.
+            ...newScopes,
+        },
+    };
+    return newConfig;
+}
+/**
+ * Perform initialization using initStrategy: "auto".
+ * @param {object} config The view config.
+ * @param {PluginCoordinationType[]} coordinationTypeObjs
+ * @param {PluginViewType[]} viewTypeObjs
+ * @returns {object} The config.
+ */
+function initializeAuto(config, coordinationTypeObjs, viewTypeObjs) {
+    let newConfig = config;
+    const { layout, datasets } = newConfig;
+    const componentCoordinationTypes = fromEntries(viewTypeObjs.map(vt => ([vt.name, vt.coordinationTypes])));
+    const defaultCoordinationValues = fromEntries(coordinationTypeObjs.map(ct => ([ct.name, ct.defaultValue])));
+    const coordinationTypes = coordinationTypeObjs.map(ct => ct.name);
+    // For each coordination type, check whether it requires initialization.
+    coordinationTypes.forEach((coordinationType) => {
+        // A coordination type requires coordination if at least one component is missing
+        // a (coordination type, coordination scope) tuple.
+        // Components may only use a subset of all coordination types.
+        const requiresCoordination = !layout
+            .every(c => ((!componentCoordinationTypes[c.component].includes(coordinationType))
+            || c.coordinationScopes?.[coordinationType]));
+        if (requiresCoordination) {
+            // Note that the default value may be undefined.
+            let defaultValue = defaultCoordinationValues[coordinationType];
+            // Check whether this is the special 'dataset' coordination type.
+            if (coordinationType === 'dataset' && datasets.length >= 1) {
+                // Use the first dataset ID as the default
+                // if there is at least one dataset.
+                defaultValue = datasets[0].uid;
+            }
+            // Use the list of "independent" coordination types
+            // to determine whether a particular coordination type
+            // should be initialized to
+            // a unique scope for every component ("independent")
+            // vs. the same scope for every component ("together").
+            if (AUTO_INDEPENDENT_COORDINATION_TYPES.includes(coordinationType)) {
+                newConfig = coordinateComponentsIndependent(newConfig, coordinationType, defaultValue, viewTypeObjs);
+            }
+            else {
+                newConfig = coordinateComponentsTogether(newConfig, coordinationType, defaultValue, viewTypeObjs);
+            }
+        }
+    });
+    return newConfig;
+}
+/**
+ * Assign unique ids for view definitions where
+ * they are missing a value for the uid property
+ * in layout[].uid.
+ * @param {object} config The view config
+ * @returns The updated view config.
+ */
+function assignViewUids(config) {
+    const { uid, layout } = config;
+    const usedIds = layout.map(view => view.uid);
+    layout.forEach((view, i) => {
+        // Assign uids for views where they are not present.
+        if (!view.uid) {
+            const nextUid = getNextScope(usedIds);
+            layout[i].uid = nextUid;
+            usedIds.push(nextUid);
+        }
+    });
+    const newUid = uid || getNextScope([]);
+    return {
+        ...config,
+        uid: newUid,
+        layout,
+    };
+}
+/**
+ * Expand convenience file definitions. Each convenience file
+ * definition expansion function takes in one file definition and
+ * returns an array of file definitions. Not performed recursively.
+ * @param {object} config The view config containing collapsed
+ * convenience file types.
+ * @returns The view config containing expanded minimal file types.
+ */
+function expandConvenienceFileDefs(config, jointFileTypes) {
+    const convenienceFileTypes = fromEntries(jointFileTypes.map(ft => ([ft.name, ft.expandFunction])));
+    const { datasets: currDatasets } = config;
+    const datasets = cloneDeep(currDatasets);
+    currDatasets.forEach((dataset, i) => {
+        const { files = [] } = dataset;
+        let newFiles = [];
+        files.forEach((fileDef) => {
+            const { fileType } = fileDef;
+            const expansionFunc = convenienceFileTypes[fileType];
+            if (expansionFunc && typeof expansionFunc === 'function') {
+                // This was a convenience file type, so expand it.
+                const expandedFileDefs = expansionFunc(fileDef);
+                newFiles = newFiles.concat(expandedFileDefs);
+            }
+            else {
+                // This was not a convenience file type,
+                // so keep it in the files array as-is.
+                newFiles.push(fileDef);
+            }
+        });
+        datasets[i].files = newFiles;
+    });
+    return {
+        ...config,
+        datasets,
+    };
+}
+/**
+ * Initialize the view config:
+ * - Fill in missing coordination objects with default values.
+ * - Fill in missing component coordination scope mappings.
+ *   based on the `initStrategy` specified in the view config.
+ * - Fill in missing view uid values.
+ * - Expand convenience file types.
+ * Should be "stable": if run on the same view config twice, the return value the second
+ * time should be identical to the return value the first time.
+ * @param {object} config The view config prop.
+ * @param {PluginJointFileType[]} jointFileTypes
+ * @param {PluginCoordinationType[]} coordinationTypes
+ * @param {PluginViewType[]} viewTypes
+ * @returns The initialized view config.
+ */
+export function initialize(config, jointFileTypes, coordinationTypes, viewTypes) {
+    let newConfig = cloneDeep(config);
+    if (newConfig.initStrategy === 'auto') {
+        // TODO: pass coordination types with defaults
+        // TODO: pass view types with per-view coordination type lists
+        newConfig = initializeAuto(config, coordinationTypes, viewTypes);
+    }
+    newConfig = expandConvenienceFileDefs(newConfig, jointFileTypes);
+    return assignViewUids(newConfig);
+}

package/dist-tsc/view-config-utils.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=view-config-utils.test.d.ts.map

package/dist-tsc/view-config-utils.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"view-config-utils.test.d.ts","sourceRoot":"","sources":["../src/view-config-utils.test.jsx"],"names":[],"mappings":""}